members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 6254362 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4Serratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 29 4691 10854 1 0 0 name 4361 2 Bacteria 6184020 44 1 superkingdom 0 phylum 0 2213 14 40117 17 1 0 class 14 203693 Nitrospira 2213 189778 13 2196 Nitrospirales 1 18 order 0 2178 Nitrospiraceae 189779 12 family 0 1 7 1 7 genus 0 179 4 495 Leptospirillum species group 0 1 261386 150 178606 1 150 Leptospirillum ferriphilum 0 species 0 species group 142 1 261385 1660083 1 142 Leptospirillum sp. Group II 'CF-1' 0 species 0 species group 196 655606 1 0 species Leptospirillum ferrooxidans 196 1 180 1 3 genus 0 28261 2 1109 Thermodesulfovibrio species 0 1106 Thermodesulfovibrio yellowstonii 28262 1 Nitrospira 567 5 1234 0 genus 7 1 species 0 92 Candidatus Nitrospira inopinata 1715989 1 species 0 1 330214 Nitrospira defluvii 124 species 0 1 1325564 Nitrospira japonica 118 Nitrospira moscoviensis 226 1 42253 0 species 1930617 4 576 phylum 0 Calditrichae 576 4 1962850 class 0 2 1 574 Calditrichales 1962852 3 order 0 1 1 2 1962854 573 0 family genus 0 1 1 Caldithrix 573 2 187144 species 0 187145 1 572 Caldithrix abyssi 0 phylum 759 508458 11 6 1 class 0 11 649775 Synergistia 759 Synergistales 753 10 649776 0 order 4 1 Synergistaceae 749 9 649777 family 0 3 1 0 genus 81461 1 131 species 0 131 Thermanaerovibrio acidaminovorans 81462 1 0 genus 2 1 Cloacibacillus 126 2 508459 species 0 Cloacibacillus porcorum 124 1 1197717 Thermovirga 199 2 336260 0 genus 4 1 species 0 195 Thermovirga lienii 336261 1 0 genus 49894 1 106 0 species Acetomicrobium mobile 106 1 97477 genus 0 2 1 Aminobacterium 184 2 81466 Aminobacterium colombiense 182 1 81468 species 0 1783257 93 17189 clade 0 0 phylum 256845 3 246 246 Lentisphaeria 1313211 3 0 class 1 5 1 1 order 0 2 278082 Victivallales 241 0 no rank 240 1674876 1 Victivallales bacterium CCUG 44730 240 1 2094242 0 species 26 74201 Verrucomicrobia 5178 3 1 phylum 0 700 2 417295 0 no rank 0 species 1637999 1 293 Verrucomicrobia bacterium IMCC26134 species 0 Verrucomicrobia bacterium 407 1 2026799 392 Verrucomicrobiae 203494 5 class 0 1 7 1 2 0 order 48461 4 385 Verrucomicrobiales 383 1647988 3 0 family 383 Akkermansia 239934 3 genus 0 1 2 1 1679444 Akkermansia glycaniphila 206 species 0 species 0 1 239935 Akkermansia muciniphila 175 1 1 0 class 4 1955630 Methylacidiphilae 634 1 2 order 0 717963 3 633 Methylacidiphilales 717964 2 631 0 family 0 genus 631 511745 2 Methylacidiphilum fumariolicum 393 1 591154 species 0 1 511746 Methylacidiphilum infernorum 238 species 0 414999 12 3352 Opitutae 1 11 0 class Opitutales 1500 7 415000 order 0 4 1 1496 Opitutaceae 134623 6 0 family 1 5 278955 1 596 0 no rank 0 species Opitutaceae bacterium TAV5 596 1 794903 1 1 0 genus 2 1961799 Lacunisphaera 435 species 0 434 Lacunisphaera limnophila 1838286 1 460 Opitutus 178440 2 genus 0 1 1 1 107709 Opitutus terrae 459 0 species order 0 1 1 1841 Puniceicoccales 415001 4 1 1 0 family 3 415002 Puniceicoccaceae 1840 1839 Coraliomargarita 442430 2 genus 0 1 7 species 0 1832 Coraliomargarita akajimensis 395922 1 0 class 97 2 134549 134550 2 97 Candidatus Xiphinematobacter 1 3 genus 0 no rank 0 94 1 2648876 0 species 94 Candidatus Xiphinematobacter sp. Idaho Grape 1704307 1 743 5 134625 0 phylum 5 1921781 Kiritimatiellae 743 3 1 0 class 1 1 order 0 4 1921782 Kiritimatiellales 740 1921783 3 739 Kiritimatiellaceae 1 1 family 0 2 1921784 Kiritimatiella 738 1 1 genus 0 species 0 737 Kiritimatiella glycovorans 1307763 1 7394 203682 35 phylum 0 6 1 0 class 6 666505 Phycisphaerae 870 0 order 2 2483366 358 family 0 2 2483367 358 0 genus 358 2483368 2 1 1941349 Phycisphaerae bacterium ST-PulAB-D4 193 species 0 species 0 1940790 1 165 Phycisphaerae bacterium L21-RPul-D3 Phycisphaerales 506 3 666506 0 order 5 1 2 666507 Phycisphaeraceae 501 1 1 0 family 1 666508 500 0 genus 547188 1 500 Phycisphaera mikurensis 0 species 2323 3 2517206 class 0 2323 Candidatus Brocadiales 1127829 3 order 0 1 1 family 0 1127830 2 2322 1 1 0 genus 380738 2 2322 Candidatus Kuenenia species 0 174633 1 2321 Candidatus Kuenenia stuttgartiensis 1 10 class 0 203683 26 4201 Planctomycetia 112 11 1720 Planctomycetales 1 49 0 order 35 1 0 family 10 126 Planctomycetaceae 1671 2 1649490 Rubinisphaera 283 2 1 genus 0 species 0 281 Rubinisphaera brasiliensis 119 1 1 1 genus 0 2 1936111 Fuerstia 366 0 species 365 Fuerstia marisgermanicae 1891926 1 Planctomyces 789 3 118 0 genus 8 1 781 2648843 2 no rank 0 species 0 1636152 1 428 Planctomyces sp. SH-PL62 Planctomyces sp. SH-PL14 353 1 1632864 species 0 2 1 genus 0 2 1649480 Planctopirus 198 120 1 196 Planctopirus limnophila 0 species 910 2691354 4 0 order 2691357 3 769 0 family 1 123 387 0 genus 125 1 387 Pirellula staleyi 0 species genus 0 1 1 382 Rhodopirellula 265488 2 0 species 1 265606 Rhodopirellula baltica 381 141 1 2691358 family 0 genus 0 141 1 1676125 1331910 1 141 Thermogutta terrifontis species 0 0 order 2691355 3 459 1 3 family 0 1914233 3 459 Gemmataceae 2 113 Gemmata 456 14 1 genus 0 no rank 0 2622970 1 442 0 species 1630693 1 442 Gemmata sp. SH-PL17 0 order 2691356 7 1102 1763524 7 1102 Isosphaeraceae 1 10 family 0 genus 0 1 14 345 Singulisphaera 466152 2 331 Singulisphaera acidiphila 466153 1 0 species 2 127 Isosphaera 395 15 1 0 genus species 0 380 Isosphaera pallida 128 1 2 1763521 Paludisphaera 352 1 1 0 genus 351 Paludisphaera borealis 1387353 1 0 species 204428 24 3628 phylum 0 3628 Chlamydiia 204429 24 class 0 1 9 13 51291 Chlamydiales 2566 4 1 order 0 2562 12 809 0 family 0 no rank 2562 1113537 12 0 genus 1 28 2562 Chlamydia 810 12 species 0 188 Chlamydia abortus 83555 1 85991 1 290 Chlamydia pecorum species 0 318 Chlamydia psittaci 83554 1 0 species 1457153 1 209 Chlamydia gallinacea 0 species species 0 Chlamydia muridarum 236 1 83560 species 0 1 83559 Chlamydia suis 139 0 species 813 1 162 Chlamydia trachomatis 0 species 1 83556 Chlamydia felis 196 0 species 230 Chlamydia avium 1457141 1 83557 1 196 Chlamydia caviae 0 species species 0 83558 1 370 Chlamydia pneumoniae 1 4 order 0 1963360 10 1053 Parachlamydiales Simkaniaceae 245 3 92712 family 0 1 1 genus 0 2 1 Simkania 244 2 34093 242 Simkania negevensis 83561 1 0 species Parachlamydiaceae 570 4 92713 family 0 1 1 83551 2 338 Parachlamydia 1 3 0 genus 83552 1 335 Parachlamydia acanthamoebae species 0 1 282132 231 0 genus Candidatus Protochlamydia naegleriophila 231 1 389348 species 0 0 family 1 1 Waddliaceae 234 2 92714 233 71666 1 genus 0 1 71667 Waddlia chondrophila 233 0 species 9 74152 Elusimicrobia 1470 4 1 0 phylum 641853 1 231 0 class 231 1 641854 0 order 1 641876 231 0 family 0 genus 1 423604 231 423605 1 231 Elusimicrobium minutum species 0 447830 6 825 Endomicrobia 1 2 0 class order 0 1 2 823 Endomicrobiales 1783344 5 0 family 1 1 821 Endomicrobiaceae 1783343 4 1 1 0 genus 3 1408194 Endomicrobium 820 0 species 1408281 1 456 Endomicrobium proavitum 1408204 1 363 Candidatus Endomicrobium trichonymphae species 0 no rank 0 1 99260 410 uncultured Termite group 1 bacterium 410 1 167965 species 0 5 68297 1475 0 phylum Dictyoglomia 1475 5 203486 class 0 4 1 Dictyoglomales 1471 4 203487 0 order 1 1 3 203488 1470 0 family 3 13 Dictyoglomus 1470 2 1 0 genus Dictyoglomus thermophilum 690 1 14 0 species 0 species Dictyoglomus turgidum 778 1 513050 clade 0 2498710 1 351 67814 1 351 phylum 0 class 0 1 693071 351 351 1 693072 order 0 351 693073 1 0 family genus 0 351 693074 1 species 0 351 Caldisericum exile 693075 1 phylum 0 6422 200783 24 6422 Aquificae 187857 24 0 class 1 18 1 5 0 order 32069 18 5484 Aquificales 2535 Aquificaceae 64898 12 family 0 1 10 123 1 2713 0 genus species 0 63363 1 123 Aquifex aeolicus 75905 3 224 Thermocrinis 1 1 genus 0 0 species Thermocrinis albus 117 1 136094 106 Thermocrinis ruber 75906 1 0 species 0 genus 1 55 2016 Hydrogenobaculum 168657 6 no rank 0 1961 2622382 5 0 species 1 547144 Hydrogenobaculum sp. HO 388 547146 1 388 Hydrogenobaculum sp. SN 0 species 547145 1 388 Hydrogenobaculum sp. SHO 0 species 380749 1 409 Hydrogenobaculum sp. Y04AAS1 0 species species 0 Hydrogenobaculum sp. 3684 388 1 547143 1 939 162 genus 0 1 940 Hydrogenobacter thermophilus 162 0 species 0 no rank 258 1 90150 258 412592 1 0 genus 0 species 412593 1 258 Thermosulfidibacter takaii family 0 2686 224027 4 0 genus 1 19 2199 Sulfurihydrogenibium 212790 3 0 no rank 1229 1 2619248 species 0 1 436114 Sulfurihydrogenibium sp. YO3AOP1 1229 0 species Sulfurihydrogenibium azorense 951 1 309806 487 182899 1 0 genus 309805 1 487 Persephonella marina 0 species 0 order 920 5 1485951 0 family 1 5 920 Desulfurobacteriaceae 558314 5 4 1 0 genus 2 64159 Desulfurobacterium 822 0 species 818 Desulfurobacterium thermolithotrophum 64160 1 0 genus 1 2 93 Thermovibrio 171868 2 228745 1 91 Thermovibrio ammonificans 0 species no rank 0 714 3 2323 clade 0 3 1783234 714 0 clade 628 95901 2 2497643 2 628 class 0 order 0 628 2497644 2 0 family 2497645 2 628 1551504 2 628 Candidatus Babela 1 9 genus 0 0 species 673862 1 619 Candidatus Babela massiliensis 1 95818 86 phylum 0 1895827 1 86 no rank 0 2056494 1 86 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 species phylum 0 29634 24 32066 29634 Fusobacteriia 203490 24 0 class 1 52 0 order 37 1 Fusobacteriales 29582 23 203491 family 0 1 15 23025 Fusobacteriaceae 203492 11 167639 1 819 genus 0 0 species 1 167642 Ilyobacter polytropus 819 Fusobacterium 22191 9 848 genus 0 107 1 Fusobacterium nucleatum 9213 1 851 species 0 856 1 2631 Fusobacterium varium species 0 1 850 Fusobacterium mortiferum 1110 0 species 0 species 1 1583098 Fusobacterium hwasookii 2406 Fusobacterium necrophorum 486 1 859 species 0 861 1 1270 Fusobacterium ulcerans species 0 Fusobacterium periodonticum 4193 1 860 species 0 775 Fusobacterium gonidiaformans 849 1 0 species 1 12 0 family 1129771 11 6520 Leptotrichiaceae genus 0 1 7 758 Sneathia 168808 2 751 Sneathia amnii 187101 1 0 species 0 genus 4 1 Streptobacillus 1280 2 34104 0 species Streptobacillus moniliformis 1276 1 34105 genus 0 1 32068 856 0 species 1 826 Sebaldella termitidis 856 1 27 genus 0 32067 5 3614 Leptotrichia 2622 3 2633022 0 no rank 0 species 1 1785996 Leptotrichia sp. oral taxon 847 974 712357 1 746 Leptotrichia sp. oral taxon 212 0 species Leptotrichia sp. oral taxon 498 902 1 712368 0 species 0 species 1 40542 Leptotrichia buccalis 965 phylum 0 2379 200940 9 1 4 class 0 67799 9 2379 Thermodesulfobacteria 3 1 0 order 8 188710 Thermodesulfobacteriales 2375 2372 Thermodesulfobacteriaceae 188711 7 family 0 1 8 Thermodesulfatator 308 2 241192 genus 0 2 1 species 0 171695 1 306 Thermodesulfatator indicus Thermodesulfobacterium 1715 3 1740 0 genus 3 1 species 0 1741 1 446 Thermodesulfobacterium commune 1295609 1 1266 Thermodesulfobacterium geofontis 0 species genus 0 341 444090 1 Caldimicrobium thiodismutans 341 1 1653476 0 species 0 clade 1783272 1640 4522571 3509 39 200795 0 phylum 5 292625 428 0 class 0 order 5 292629 428 0 family 1 6 428 Anaerolineaceae 292628 5 0 no rank 102 1324991 1 1 1889813 Anaerolineaceae bacterium oral taxon 439 102 0 species 165 2019482 1 genus 0 0 species 1 1986204 Brevefilum fermentans 165 2 233189 Anaerolinea 155 1 1 genus 0 167964 1 154 Anaerolinea thermophila 0 species Caldilineae 292 5 475962 class 0 2 1 1 2 order 0 475963 4 290 Caldilineales 3 475964 Caldilineaceae 288 3 1 0 family 285 Caldilinea 233191 2 genus 0 1 1 0 species 284 Caldilinea aerophila 133453 1 8 301297 Dehalococcoidia 590 2 1 0 class Dehalogenimonas 186 3 670486 0 genus 8 1 species 0 1839801 1 95 Dehalogenimonas formicexedens 0 species 1 552810 Dehalogenimonas lykanthroporepellens 83 order 0 1 1 402 Dehalococcoidales 1202465 4 401 3 1202464 family 0 Dehalococcoides 401 3 61434 genus 0 3 1 no rank 0 1 237581 92 1522671 1 92 Dehalococcoides sp. UCH007 species 0 species 0 306 Dehalococcoides mccartyi 61435 1 9 32061 Chloroflexia 1278 1 1 0 class Chloroflexales 1277 8 32064 0 order 3 1 0 suborder 449 3 1508595 1508635 3 449 family 0 Roseiflexus 449 3 120961 0 genus 1 1 1 2609473 233 no rank 0 Roseiflexus sp. RS-1 233 1 357808 species 0 Roseiflexus castenholzii 215 1 120962 0 species suborder 0 825 4 1508594 family 0 825 4 1106 1107 4 825 Chloroflexus 1 11 genus 0 470 Chloroflexus aggregans 152260 1 0 species 2 1108 Chloroflexus aurantiacus 344 172 1 species 0 1 480224 Chloroflexus sp. Y-400-fl 172 0 strain 0 class 372 7 189775 4 85000 282 subclass 0 1 1 order 0 4 85001 Sphaerobacterales 282 0 suborder 281 3 255728 1 1 0 family 3 85002 Sphaerobacteraceae 281 2056 2 280 Sphaerobacter 1 2 0 genus 278 Sphaerobacter thermophilus 2057 1 species 0 order 0 4 1 Thermomicrobiales 90 3 189776 189777 2 86 0 family 0 genus 1 1 Thermomicrobium 86 2 499 Thermomicrobium roseum 85 1 500 0 species 0 class 3 1 Ardenticatenia 549 5 1382928 1382929 4 546 Ardenticatenales 1 10 0 order family 0 3 1 Ardenticatenaceae 536 3 1382930 1988031 2 533 Candidatus Promineofilum 1 3 genus 0 Candidatus Promineofilum breve 530 1 1806508 0 species 1239 679 349617 Firmicutes 1 80 phylum 0 2 1 class 0 9 526524 Erysipelotrichia 1385 Erysipelotrichales 1383 8 526525 0 order 7 1 7 128827 Erysipelotrichaceae 1376 10 1 family 0 1647 3 598 Erysipelothrix 1 3 genus 0 0 species 1514105 1 281 Erysipelothrix larvae 0 species Erysipelothrix rhusiopathiae 314 1 1648 0 genus 85 1 1729679 species 0 1 1702221 Faecalibaculum rodentium 85 0 genus 456 191303 1 no rank 0 1 2638206 456 Turicibacter sp. H121 456 1 1712675 0 species 544447 1 227 0 no rank 0 species 227 Erysipelotrichaceae bacterium I46 1834207 1 0 class 1 121 125318 Clostridia 186801 195 2 1 0 order 3 485256 Natranaerobiales 609 2 485255 Natranaerobiaceae 607 1 1 family 0 0 genus 1 375928 606 0 species 1 375929 Natranaerobius thermophilus 606 order 0 225 1 Clostridiales 105275 146 186802 5 1 family 0 4 186806 Eubacteriaceae 1159 genus 0 509 33951 1 species 0 Acetobacterium woodii 509 1 33952 1 7 0 genus 1730 2 645 Eubacterium 638 Eubacterium limosum 1736 1 0 species 0 family 2 1 Symbiobacteriaceae 191 3 543349 1 1 0 genus 2733 2 189 Symbiobacterium 1 2734 Symbiobacterium thermophilum 188 species 0 1 7 0 family 68298 4 448 Syntrophomonadaceae genus 0 1 3 303 Syntrophomonas 862 2 0 species 300 Syntrophomonas wolfei 863 1 129001 1 138 0 genus 86170 1 138 Syntrophothermus lipocalidus species 0 216572 2 219 Oscillospiraceae 1 1 family 0 0 genus 459786 1 218 0 species 218 Oscillibacter valericigenes 351091 1 family 0 990719 1 101 genus 0 990721 1 101 0 species 1805714 1 101 Christensenella massiliensis 0 family 3726 11 2304686 2304692 3 1773 genus 0 species 0 1 1515 Ruminiclostridium thermocellum 349 Herbivorax saccincola 719 1 1677857 0 species 1 288965 [Clostridium] clariflavum 705 0 species 1 2304691 226 0 genus 0 species 226 [Clostridium] stercorarium 1510 1 565 Fastidiosipila 236752 2 0 genus 1 1 0 species 564 Fastidiosipila sanguinis 236753 1 1508657 2 461 Ruminiclostridium 1 7 genus 0 [Clostridium] cellulolyticum 454 1 1521 0 species genus 0 2304693 1 464 0 species 1 84032 [Clostridium] thermosuccinogenes 464 no rank 0 89 1 2305130 89 Ruminiclostridium sp. KB18 1834198 1 species 0 148 1 1637257 genus 0 0 species 1 884684 Mageeibacillus indolicus 148 no rank 0 7 538999 1113 0 family 1 1 146 Clostridiales Family XVII. Incertae Sedis 539000 2 73918 1 145 0 genus 73919 1 145 Thermaerobacter marianensis 0 species family 0 518 543314 2 143393 1 243 [Eubacterium] sulci 0 species genus 0 275 86331 1 species 0 1 114527 Mogibacterium diversum 275 2 1392389 Intestinimonas 157 2 1 0 genus 1 1297617 Intestinimonas butyriciproducens 155 0 species 1 2717089 292 0 genus species 0 292 Mordavella sp. Marseille-P3756 2086584 1 2 31984 Heliobacteriaceae 113 1 1 0 family 2697 1 112 genus 0 species 0 35701 1 112 Heliobacterium modesticaldum 11 541000 Ruminococcaceae 1328 18 1 family 0 2 1 0 genus 2 946234 Flavonifractor 211 0 species Flavonifractor plautii 209 1 292800 no rank 0 552397 1 159 1 29343 [Clostridium] cellulosi 159 species 0 1 2 0 genus 1263 3 475 Ruminococcus 1 1160721 Ruminococcus bicirculans 247 species 0 226 Ruminococcus albus 1264 1 0 species 0 no rank 99 2305133 1 0 species 99 Ruminococcaceae bacterium CPB6 1572656 1 Ethanoligenens 182 2 253238 genus 0 1 1 253239 1 181 Ethanoligenens harbinense 0 species genus 0 184 216851 1 184 Faecalibacterium prausnitzii 853 1 0 species 72966 Clostridiaceae 31979 39 0 family 1 69 0 genus 1 17 2571 Candidatus Arthromitus 49082 4 2638829 3 2554 no rank 0 species 0 827 Candidatus Arthromitus sp. SFB-mouse-NL 1508644 1 932 Candidatus Arthromitus sp. SFB-rat-Yit 1041504 1 species 0 0 species 795 Candidatus Arthromitus sp. SFB-mouse 49118 1 30 1485 Clostridium 68099 292 1 genus 0 0 species Clostridium cochlearium 1468 1 1494 1501 1 3416 Clostridium pasteurianum 0 species 0 species 1520 1 3760 Clostridium beijerinckii 0 species 1493 1 1437 Clostridium cellulovorans 1467 Clostridium chauvoei 46867 1 0 species species 0 1268 Clostridium novyi 1542 1 1488 1 1397 Clostridium acetobutylicum species 0 2614128 2 690 0 no rank species 0 114 Clostridium sp. SY8519 1042156 1 576 Clostridium sp. BNL1100 755731 1 species 0 Clostridium saccharoperbutylacetonicum 2949 1 36745 species 0 species 0 15946 Clostridium botulinum 1491 1 Clostridium saccharobutylicum 4162 1 169679 species 0 1 1538 Clostridium ljungdahlii 1333 0 species Clostridium butyricum 2659 1 1492 0 species 1 238834 Clostridium estertheticum 1482 species 0 species 0 1 84022 Clostridium aceticum 978 1 1502 Clostridium perfringens 3157 0 species 1509 1 1611 Clostridium sporogenes 0 species 2849 Clostridium baratii 1561 1 0 species 0 species 1 1548 Clostridium scatologenes 1943 1 1513 Clostridium tetani 1860 species 0 Clostridium carboxidivorans 1939 1 217159 0 species 1 394958 Clostridium taeniosporum 1649 0 species 0 species 1554 Clostridium argentinense 29341 1 1 1497 Clostridium formicaceticum 945 0 species 0 species Clostridium kluyveri 1878 1 1534 species 0 1 1216932 Clostridium bornimense 1661 Clostridium autoethanogenum 1276 1 84023 0 species species 0 1073 Clostridium tyrobutyricum 1519 1 3 114627 Alkaliphilus 1618 1 1 genus 0 species 0 208226 1 1107 Alkaliphilus metalliredigens species 0 1 461876 Alkaliphilus oremlandii 510 0 genus 1 390805 609 1 1424294 Geosporobacter ferrireducens 609 0 species 6107 Peptococcaceae 186807 26 0 family 1 25 213 1 278993 0 genus 0 species 863643 1 213 Thermincola potens 371 2282742 1 0 genus 0 species 58138 1 371 Desulfotomaculum acetoxidans 79206 3 1349 genus 0 0 species 477 Desulfosporosinus acidiphilus 885581 1 0 species 412 Desulfosporosinus orientis 1563 1 79209 1 460 Desulfosporosinus meridiei 0 species 0 genus 2282740 1 487 0 species 487 Desulfotomaculum gibsoniae 102134 1 5 36853 Desulfitobacterium 1307 3 1 0 genus Desulfitobacterium hafniense 311 1 49338 species 0 360 Desulfitobacterium dichloroeliminans 233055 1 species 0 Desulfitobacterium dehalogenans 317 1 36854 0 species species 0 1 142877 Desulfitobacterium metallireducens 316 genus 0 222 1 51196 1 51197 Syntrophobotulus glycolicus 222 0 species 2 471826 Candidatus Desulforudis 134 1 1 0 genus 0 species 133 Candidatus Desulforudis audaxviator 471827 1 10 1 genus 0 4 56112 Dehalobacter 527 0 no rank 353 2 2635733 1131462 1 176 Dehalobacter sp. CF species 0 species 0 Dehalobacter sp. DCA 177 1 1147129 species 0 1 55583 Dehalobacter restrictus 164 51514 2 373 Dehalobacterium 1 1 0 genus 51515 1 372 Dehalobacterium formicoaceticum species 0 genus 0 1 5 1099 Desulfotomaculum 1562 5 226 Desulfotomaculum ferrireducens 1833852 1 species 0 1565 1 215 Desulfotomaculum nigrificans 0 species 0 species 1 1564 Desulfotomaculum ruminis 188 59610 1 465 Desulfotomaculum reducens species 0 Peptostreptococcaceae 7020 12 186804 family 0 12 1 2 1870884 Clostridioides 3385 7 1 genus 0 1 1496 Clostridioides difficile 3378 0 species no rank 0 1411023 1 490 490 Peptostreptococcaceae bacterium oral taxon 929 2081703 1 species 0 1 1 0 genus 186831 2 879 Acetoanaerobium 0 species 878 Acetoanaerobium sticklandii 1511 1 1 1 genus 0 2 44259 Filifactor 418 species 0 1 143361 Filifactor alocis 417 genus 0 1 1 Paeniclostridium 1585 2 1849828 1505 1 1584 Paeniclostridium sordellii 0 species Peptoclostridium 251 2 1481960 genus 0 1 1 250 Peptoclostridium acidaminophilum 1731 1 species 0 family 0 1 23 10559 Lachnospiraceae 186803 23 genus 0 28050 1 754 754 [Eubacterium] eligens 39485 1 species 0 genus 0 2909 698776 1 0 species 1 29360 Cellulosilyticum lentocellum 2909 307 2719231 1 0 genus species 0 [Clostridium] saccharolyticum 307 1 84030 1 1 genus 0 572511 3 661 Blautia 351 Blautia hansenii 1322 1 0 species no rank 0 309 2648079 1 species 0 1796616 1 309 Blautia sp. YL58 378 2039240 1 0 genus 0 species 28446 1 378 Anaerotignum propionicum genus 0 1 1 Anaerostipes 531 2 207244 530 Anaerostipes hadrus 649756 1 species 0 0 genus 1 1663717 359 359 Herbinix luporum 1679721 1 species 0 841 1 169 genus 0 0 species 301301 1 169 Roseburia hominis 219 2719313 1 genus 0 1 208479 [Clostridium] bolteae 219 species 0 1 1 genus 0 830 3 1494 Butyrivibrio species 0 185008 1 705 Butyrivibrio hungatei 0 species 1 43305 Butyrivibrio proteoclasticus 788 1278 Lachnoclostridium 1506553 4 genus 0 1 1 Lachnoclostridium phocaeense 145 1 1871021 0 species 0 no rank 1 2608895 263 Lachnoclostridium sp. YL32 263 1 1834196 0 species 0 species Lachnoclostridium phytofermentans 869 1 66219 186928 2 478 0 no rank species 0 223 Lachnospiraceae bacterium oral taxon 500 712991 1 1 39491 [Eubacterium] rectale 255 species 0 genus 0 1 2569097 999 999 [Eubacterium] hallii 39488 1 species 0 13927 Thermoanaerobacterales 68295 32 order 0 1 16 543372 1 160 0 family genus 0 252965 1 160 Mahella australiensis 160 1 252966 0 species family 0 1 4 6469 Thermoanaerobacterales Family III. Incertae Sedis 543371 13 genus 0 2 1 Thermoanaerobacterium 1729 3 28895 0 species 1 29329 Thermoanaerobacterium xylanolyticum 606 1121 Thermoanaerobacterium thermosaccharolyticum 1517 1 species 0 0 genus 88 1 Caldicellulosiruptor 4736 9 44000 451 Caldicellulosiruptor lactoaceticus 52766 1 0 species 1 44001 Caldicellulosiruptor saccharolyticus 648 species 0 1 31899 Caldicellulosiruptor bescii 604 species 0 Caldicellulosiruptor owensensis 577 1 55205 species 0 species 0 52765 1 459 Caldicellulosiruptor kristjanssonii 413889 1 742 Caldicellulosiruptor kronotskyensis species 0 413888 1 567 Caldicellulosiruptor hydrothermalis 0 species species 0 Caldicellulosiruptor obsidiansis 600 1 717609 704 227387 1 family 0 704 1 227388 0 genus 0 species 184064 1 704 Thermodesulfobium narugense 1 15 0 family 186814 16 6578 Thermoanaerobacteraceae 229 1 genus 0 9 1754 Thermoanaerobacter 5444 0 species 658 Thermoanaerobacter wiegelii 46354 1 0 species 583357 1 611 Thermoanaerobacter mathranii 0 species Thermoanaerobacter pseudethanolicus 633 1 496866 species 0 1 108150 Thermoanaerobacter italicus 639 no rank 0 1425 2636821 2 0 species 1 399726 Thermoanaerobacter sp. X514 696 Thermoanaerobacter sp. X513 729 1 573062 0 species 618 Thermoanaerobacter kivui 2325 1 species 0 0 species 1 29323 Thermoanaerobacter brockii 631 0 genus 249529 1 476 species 0 Caldanaerobacter subterraneus 476 1 911092 genus 0 317 1 129957 0 species Carboxydothermus hydrogenoformans 317 1 129958 0 no rank 3 42857 203 genus 0 42837 1 90 0 species 90 Ammonifex degensii 42838 1 1 1 0 genus 44260 2 113 Moorella 1525 1 112 Moorella thermoacetica 0 species genus 0 1 140458 123 1 85874 Thermacetogenium phaeum 123 species 0 0 order 1 12 4802 Halanaerobiales 53433 11 family 0 1 1 1634 Halobacteroidaceae 53434 4 42417 2 1029 Halobacteroides 1 2 0 genus 0 species 1027 Halobacteroides halobius 42422 1 604 1 28186 0 genus species 0 1 28187 Acetohalobium arabaticum 604 1 12 0 family 972 6 3156 Halanaerobiaceae 2 32636 Halothermothrix 538 10 1 0 genus species 0 Halothermothrix orenii 528 1 31909 1 8 0 genus 2330 3 2606 Halanaerobium 2331 1 1499 Halanaerobium praevalens species 0 species 0 656519 1 1099 Halanaerobium hydrogeniformans 2 2770089 584 order 0 family 0 135 2770093 1 0 genus 135 291988 1 1 291990 Thermosediminibacter oceani 135 0 species 2770092 1 449 0 family genus 0 449 1 499228 0 species 449 Tepidanaerobacter acetatoxydans 499229 1 2 1 class 0 5 1676648 Limnochordia 188 1676649 4 186 Limnochordales 1 2 0 order 1 5 0 family 1676650 3 184 Limnochordaceae genus 0 4 1 Limnochorda 179 2 1676651 species 0 1 1555112 Limnochorda pilosa 175 no rank 0 857 84086 1 species 0 endosymbiont 'TC1' of Trimyema compressum 857 1 243899 Tissierellia 4824 17 1737404 class 0 6 1 436 2 1737407 no rank 0 Ezakiella 436 2 1582879 genus 0 3 1 0 species 1 1852374 Ezakiella massiliensis 433 order 0 1 19 4382 Tissierellales 1737405 14 1 1 family 0 3 2042895 Gottschalkiaceae 1154 0 genus 1 4 1153 Gottschalkia 1505664 2 0 species 1556 1 1149 Gottschalkia acidurici family 0 1 7 3209 Peptoniphilaceae 1570339 10 1 1 0 genus 150022 2 701 Finegoldia species 0 700 Finegoldia magna 1260 1 genus 0 217 1 1161127 Murdochiella vaginalis 217 1 1852373 0 species 0 genus 1 3 406 Peptoniphilus 162289 2 0 no rank 1 2637196 403 0 species 403 Peptoniphilus sp. ING2-D1G 1912856 1 genus 0 1 1 Anaerococcus 911 3 165779 0 species 1 33034 Anaerococcus prevotii 417 1 1870984 Anaerococcus mediterraneensis 493 species 0 0 genus 967 543311 1 Parvimonas micra 967 1 33033 0 species 422 91061 Bacilli 211747 184 1 0 class 1385 258 149862 Bacillales 1 302 order 0 0 no rank 1631 9 539002 no rank 0 539738 2 493 0 genus 4 1 Gemella 493 2 1378 0 no rank 489 2624949 1 1785995 1 489 Gemella sp. oral taxon 928 0 species 539742 7 1138 0 no rank 16 1 0 genus 7 33986 Exiguobacterium 1138 103 Exiguobacterium antarcticum 132920 1 species 0 1 332410 Exiguobacterium sibiricum 162 0 species 2644629 4 857 no rank 0 1849031 1 295 Exiguobacterium sp. U13-1 species 0 321 Exiguobacterium sp. ZWU0009 1224749 1 species 0 species 0 Exiguobacterium sp. AT1b 119 1 360911 species 0 122 Exiguobacterium sp. MH3 1399115 1 1 3 0 family 186820 9 4388 Listeriaceae 505 Brochothrix 2755 2 0 genus 1 3 Brochothrix thermosphacta 502 1 2756 species 0 Listeria 3880 6 1637 genus 0 47 1 Listeria innocua 506 1 1642 0 species 1639 1 1597 Listeria monocytogenes 0 species Listeria ivanovii 837 1 1638 0 species 514 Listeria welshimeri 1643 1 species 0 1640 1 379 Listeria seeligeri species 0 0 family 217 1 186821 217 663587 1 no rank 0 species 0 217 [Bacillus] selenitireducens 85683 1 0 family 101 2 186824 1 1 genus 0 2 1677050 Novibacillus 101 species 0 100 Novibacillus thermophilus 1471761 1 0 family 123 1 Bacillaceae 80530 117 186817 2675229 2 1662 genus 0 0 species Bacillus muralis 327 1 264697 1 1478 Bacillus simplex 1335 species 0 351195 1 194 0 genus 0 species Salimicrobium jeotgali 194 1 1230341 1 2 0 genus 182709 2 1431 Oceanobacillus species 0 1 182710 Oceanobacillus iheyensis 1429 genus 0 1 16 2953 Anoxybacillus 150247 6 species 0 1 198467 Anoxybacillus gonensis 502 33934 1 709 Anoxybacillus flavithermus 0 species 2 2639704 1132 no rank 0 species 0 1490057 1 530 Anoxybacillus sp. B7M1 0 species 1490052 1 602 Anoxybacillus sp. B2M1 1 294699 Anoxybacillus amylolyticus 594 0 species 5 400634 Lysinibacillus 4130 22 1 0 genus 0 no rank 1 2636778 789 0 species Lysinibacillus sp. YS11 789 1 2072025 species 0 1 1145276 Lysinibacillus varians 650 species 0 2026 Lysinibacillus sphaericus 1421 1 0 species 1 28031 Lysinibacillus fusiformis 643 1386 58 53755 Bacillus 1 707 genus 0 852 Bacillus weihaiensis 1547283 1 species 0 515 Bacillus glycinifermentans 1664069 1 species 0 1641 Bacillus pumilus 1408 1 species 0 0 no rank 19 185979 4206 0 species Bacillus sp. SDLI1 105 1 1774743 0 species 1 2026248 Bacillus sp. 1s-1 212 species 0 1 1409 Bacillus sp. (in: Bacteria) 82 666686 1 885 Bacillus sp. 1NLA3E 0 species 1 1446792 Bacillus sp. Pc3 98 species 0 0 species 1 1827146 Bacillus sp. IHB B 7164 558 species 0 1 1941347 Bacillus sp. 275 84 Bacillus sp. OxB-1 181 1 98228 species 0 Bacillus sp. LM 4-2 69 1 1628753 0 species 0 species 47 Bacillus sp. BH072 1570330 1 0 species 563169 1 92 Bacillus sp. SJ-10 135 Bacillus sp. MD-5 2009331 1 species 0 species 0 75 Bacillus sp. YP1 1574141 1 129 Bacillus sp. JS 1127744 1 species 0 0 species 1837130 1 187 Bacillus sp. FJAT-14266 1 756828 Bacillus sp. WP8 437 species 0 1856406 1 212 Bacillus sp. H15-1 0 species species 0 Bacillus sp. Lzh-5 62 1 2049935 1565991 1 556 Bacillus sp. X1(2014) 0 species 0 species Bacillus horikoshii 399 1 79883 Bacillus methanolicus 731 1 1471 species 0 0 species group 28002 86661 10 species 0 635 Bacillus bombysepticus 658666 1 1682 2750818 3 0 no rank Bacillus sp. ABP14 426 1 1892404 species 0 0 species 1839798 1 772 Bacillus sp. FDAARGOS_235 0 species 484 Bacillus sp. HBCD-sjtu 2053832 1 1 580165 Bacillus cytotoxicus 670 species 0 species 0 1 1405 Bacillus mycoides 3309 1 1428 Bacillus thuringiensis 10294 species 0 1 1396 Bacillus cereus 9508 species 0 species 0 591 Bacillus toyonensis 155322 1 0 species 1313 Bacillus anthracis 1392 1 135735 1 858 Bacillus endophyticus 0 species 79881 1 76 Bacillus gibsonii 0 species 1 632773 Bacillus beveridgei 189 0 species 1154 Bacillus cohnii 33932 1 species 0 species 0 561879 1 942 Bacillus safensis 0 species group 408 1792192 1 0 species Bacillus altitudinis 408 1 293387 1 1398 Bacillus coagulans 468 species 0 0 species group 5415 9 653685 Bacillus paralicheniformis 306 1 1648923 0 species Bacillus sonorensis 244 1 119858 species 0 0 species Bacillus subtilis 2246 1 1423 1 1452 Bacillus atrophaeus 560 0 species 1521 1938374 3 species subgroup 0 96 Bacillus siamensis 659243 1 species 0 1390 1 763 Bacillus amyloliquefaciens species 0 662 Bacillus velezensis 492670 1 species 0 species 0 1 72361 Bacillus vallismortis 72 0 species Bacillus licheniformis 466 1 1402 species 0 371 Bacillus xiamenensis 1178537 1 324767 1 242 Bacillus infantis 0 species 1 412384 Bacillus aryabhattai 603 species 0 0 species 1479 1 333 Bacillus smithii 971 Bacillus cellulosilyticus 1413 1 0 species Bacillus flexus 940 1 86664 species 0 0 species 1 1404 Bacillus megaterium 3732 106 1 genus 0 15 129337 Geobacillus 3704 1129 4 1505648 0 species group 33938 1 167 Geobacillus thermocatenulatus 0 species species 0 1 169283 Geobacillus lituanicus 102 Geobacillus kaustophilus 269 1 1462 0 species 591 Geobacillus thermoleovorans 33941 1 0 species Geobacillus subterraneus 95 1 129338 species 0 0 species 418 Geobacillus thermodenitrificans 33940 1 species 0 Geobacillus genomosp. 3 99 1 1921421 1422 1 392 Geobacillus stearothermophilus species 0 no rank 0 2642459 6 1465 0 species 550542 1 78 Geobacillus sp. Y412MC52 0 species 1 1233873 Geobacillus sp. GHH01 70 1 471223 Geobacillus sp. WCH70 478 0 species species 0 Geobacillus sp. Y412MC61 82 1 544556 1 581103 Geobacillus sp. Y4.1MC1 383 species 0 0 species 374 Geobacillus sp. C56-T3 691437 1 genus 0 3 1 Terribacillus 284 2 459532 0 species 586416 1 281 Terribacillus aidingensis 1444 2675230 2 genus 0 568 Bacillus oceanisediminis 665099 1 0 species 1 859143 Bacillus kochii 876 0 species 0 genus 2 1 Amphibacillus 553 2 29331 0 species 1 1449 Amphibacillus xylanus 551 genus 0 1 1055323 540 Aeribacillus pallidus 540 1 33936 0 species genus 0 1 1906945 404 1426 1 404 Parageobacillus thermoglucosidasius species 0 Fictibacillus 854 3 1329200 0 genus 6 1 Fictibacillus phosphorivorans 430 1 1221500 0 species Fictibacillus arsenicus 418 1 255247 0 species 7 84406 Virgibacillus 4330 15 1 0 genus 1 1482 Virgibacillus halodenitrificans 716 0 species 1 163877 Virgibacillus necropolis 727 species 0 1473 1 840 Virgibacillus pantothenticus species 0 0 species 622 Virgibacillus phasianinus 2017483 1 0 no rank 1410 2 2620237 species 0 839 Virgibacillus sp. 6R 1911587 1 1 403957 Virgibacillus sp. SK37 571 species 0 1 3 genus 0 45667 3 737 Halobacillus species 0 1570 1 346 Halobacillus halophilus 388 Halobacillus mangrovi 402384 1 0 species 2675234 5 3135 0 genus 86665 1 309 Bacillus halodurans species 0 species 0 1 79880 Bacillus clausii 604 199441 1 1000 Bacillus krulwichiae 0 species 0 species Bacillus pseudofirmus 710 1 79885 species 0 300825 1 512 Bacillus lehensis 297 175304 1 genus 0 1 1472767 Lentibacillus amyloliquefaciens 297 0 species 1 48 0 family 90964 40 27184 Staphylococcaceae 8 1 genus 0 4 69965 Macrococcus 1372 0 species 1855823 1 370 Macrococcus canis 2619255 1 603 no rank 0 0 species 603 Macrococcus sp. IME1552 1898474 1 0 species 391 Macrococcus caseolyticus 69966 1 1 45669 178 genus 0 0 species 178 Salinicoccus halodurans 407035 1 33 1279 Staphylococcus 25114 174 1 genus 0 species 0 1658 Staphylococcus epidermidis 1282 1 0 species Staphylococcus argenteus 723 1 985002 0 species 70258 1 355 Staphylococcus piscifermentans species 0 1 1281 Staphylococcus carnosus 616 0 species 1290 1 798 Staphylococcus hominis 0 species 1 246432 Staphylococcus equorum 1069 0 species 29384 1 637 Staphylococcus kloosii 29388 1 741 Staphylococcus capitis species 0 Staphylococcus muscae 302 1 1294 species 0 Staphylococcus cohnii 721 1 29382 0 species species 0 2772 Staphylococcus aureus 1280 1 Staphylococcus felis 410 1 46127 species 0 species 0 781 Staphylococcus simiae 308354 1 0 no rank 91994 1 695 species 0 Staphylococcus sp. AntiMn-1 695 1 1715860 Staphylococcus lugdunensis 657 1 28035 species 0 species 0 1286 1 454 Staphylococcus simulans species 0 Staphylococcus lutrae 402 1 155085 0 species 170573 1 226 Staphylococcus pettenkoferi Staphylococcus saprophyticus 765 1 29385 0 species 0 species Staphylococcus succinus 613 1 61015 0 species 1 45972 Staphylococcus pasteuri 1801 0 species 792 Staphylococcus stepanovicii 643214 1 0 species 1 1295 Staphylococcus schleiferi 596 0 species 701 Staphylococcus warneri 1292 1 species 0 Staphylococcus hyicus 451 1 1284 283734 1 501 Staphylococcus pseudintermedius 0 species 1 1283 Staphylococcus haemolyticus 829 0 species Staphylococcus condimenti 609 1 70255 species 0 985762 1 456 Staphylococcus agnetis 0 species 1302 Staphylococcus xylosus 1288 1 species 0 1296 1 838 Staphylococcus sciuri 0 species 0 species 1 214473 Staphylococcus nepalensis 669 genus 0 1 2005363 472 1849491 1 472 Auricoccus indicus 0 species family 0 1 29 9421 Planococcaceae 186818 26 Sporosarcina 2420 5 1569 genus 0 10 1 Sporosarcina psychrophila 754 1 1476 0 species no rank 0 2 2647733 429 212 Sporosarcina sp. P37 1930546 1 0 species Sporosarcina sp. P33 217 1 1930764 species 0 1 1571 Sporosarcina ureae 1227 0 species Planococcus 4210 12 1372 0 genus 32 1 species 0 1374 1 442 Planococcus kocurii 0 species 491 Planococcus donghaensis 414778 1 1302659 1 472 Planococcus sp. L10.15 0 species 0 no rank 2 2662419 807 1 2058136 Planococcus sp. MB-3u-03 307 0 species species 0 1 1526927 Planococcus sp. PAMC 21323 500 0 species 382 Planococcus maritimus 192421 1 0 species Planococcus antarcticus 299 1 161360 1 200991 Planococcus rifietoensis 179 0 species 462 Planococcus faecalis 1598147 1 0 species 1 1215089 Planococcus halocryophilus 539 0 species 0 species 1038856 1 105 Planococcus plakortidis 1 10 0 genus 648800 3 1377 Solibacillus 605 2637870 1 0 no rank 0 species 1 2048654 Solibacillus sp. R5-41 605 species 0 Solibacillus silvestris 762 1 76853 478 Kurthia 1649 2 genus 0 1 3 0 no rank 475 2644826 1 0 species 475 Kurthia sp. 11kri321 1750719 1 454 1 157226 0 genus species 0 Jeotgalibacillus malaysiensis 454 1 1508404 0 genus 1 1 Rummeliibacillus 453 2 648802 species 0 452 Rummeliibacillus stabekisii 241244 1 186823 7 1108 Alicyclobacillaceae 1 4 0 family 432330 3 536 Tumebacillus 1 1 0 genus 1214604 1 154 Tumebacillus algifaecis 0 species species 0 381 Tumebacillus avium 1903704 1 385 2 1129704 0 genus 0 species 1 33943 Kyrpidia tusciae 181 2055160 1 204 Kyrpidia sp. EA-1 0 species 0 genus 1 29330 183 405212 1 183 Alicyclobacillus acidocaldarius species 0 0 family 29 1 Paenibacillaceae 24980 46 186822 3 85151 525 0 no rank 3 1 genus 0 3 55079 Aneurinibacillus 525 Aneurinibacillus soli 267 1 1500254 0 species 255 2642329 1 no rank 0 species 0 255 Aneurinibacillus sp. XH2 1450761 1 0 genus 1 11 2136 Brevibacillus 55080 4 1 1393 Brevibacillus brevis 621 species 0 0 species 1465 1 1052 Brevibacillus laterosporus species 0 452 Brevibacillus formosus 54913 1 genus 0 4 1 Thermobacillus 213 2 76632 1 377615 Thermobacillus composti 209 species 0 genus 0 1 73 22077 Paenibacillus 44249 36 8397 13 185978 0 no rank species 0 1 1536769 Paenibacillus sp. FSL P4-0081 1024 1 481743 Paenibacillus sp. Y412MC10 176 species 0 0 species Paenibacillus sp. FSL H7-0357 442 1 1536774 0 species Paenibacillus sp. FSL R5-0912 343 1 1536771 0 species 1 1536770 Paenibacillus sp. FSL R5-0345 1378 470 Paenibacillus sp. FSL H7-0737 1536775 1 0 species species 0 596 Paenibacillus sp. BIHB4019 1870819 1 species 0 283 Paenibacillus sp. FSL R7-0273 1536772 1 0 species 2069255 1 232 Paenibacillus sp. lzh-N1 0 species 1536773 1 225 Paenibacillus sp. FSL R7-0331 1695218 1 245 Paenibacillus sp. 32O-W species 0 1 324057 Paenibacillus sp. JDR-2 217 0 species species 0 2766 Paenibacillus sp. IHBB 10380 1566358 1 130 Paenibacillus stellifer 169760 1 0 species 188 Paenibacillus naphthalenovorans 162209 1 species 0 1 365617 Paenibacillus sabinae 148 0 species 0 species 1126833 1 224 Paenibacillus beijingensis 1 61624 Paenibacillus mucilaginosus 597 species 0 species 0 189426 1 690 Paenibacillus odorifer 1 160799 Paenibacillus borealis 396 0 species species group 0 356 1 2044880 0 species 356 Paenibacillus riograndensis 483937 1 Paenibacillus ihbetae 255 1 1870820 0 species species 0 241 Paenibacillus swuensis 1178515 1 874 Paenibacillus durus 44251 1 0 species species 0 414771 1 1573 Paenibacillus donghaensis Paenibacillus graminis 637 1 189425 species 0 species 0 482 Paenibacillus peoriae 59893 1 species 0 1 528191 Paenibacillus xylanexedens 304 species 0 159743 1 270 Paenibacillus terrae 1464 1 568 Paenibacillus larvae 0 species species 0 Paenibacillus kribbensis 248 1 172713 0 species Paenibacillus yonginensis 185 1 1462996 1616788 1 728 Paenibacillus bovis species 0 Paenibacillus crassostreae 535 1 1763538 0 species species 0 1 1406 Paenibacillus polymyxa 3978 Lactobacillales 61701 163 186826 0 order 143 1 family 0 1483 186827 7 11 1 0 genus 7 1375 Aerococcus 1483 1 119206 Aerococcus sanguinicola 134 0 species 0 species 1 51665 Aerococcus urinaeequi 317 1 128944 Aerococcus urinaehominis 155 species 0 1 1377 Aerococcus viridans 277 0 species species 0 305 Aerococcus christensenii 87541 1 0 species 1 1376 Aerococcus urinae 284 0 family 12 1 Carnobacteriaceae 4611 11 186828 191769 2 1105 Marinilactibacillus 1 1 0 genus 2632303 1 1104 no rank 0 0 species 1104 Marinilactibacillus sp. 15R 1911586 1 5 2747 Carnobacterium 2771 14 1 0 genus species 0 Carnobacterium maltaromaticum 1356 1 2751 948 257487 2 0 no rank species 0 Carnobacterium sp. 17-4 597 1 208596 Carnobacterium sp. CP1 351 1 1564681 species 0 1 147709 Carnobacterium inhibens 453 species 0 1 4 0 genus 1470540 3 723 Jeotgalibaca Jeotgalibaca dankookensis 348 1 708126 species 0 371 2621505 1 no rank 0 species 0 1 1903686 Jeotgalibaca sp. PTS2502 371 19997 Streptococcaceae 1300 49 family 0 1 13 Lactococcus 4700 5 1357 0 genus 8 1 species 0 Lactococcus raffinolactis 227 1 1366 1364 1 623 Lactococcus piscium 0 species Lactococcus lactis 3230 1 1358 0 species 0 species 1363 1 612 Lactococcus garvieae 1301 43 15284 Streptococcus 1 161 genus 0 species 0 1 197614 Streptococcus pasteurianus 259 1 1304 Streptococcus salivarius 657 0 species 127 Streptococcus himalayensis 1888195 1 0 species Streptococcus pyogenes 887 1 1314 species 0 0 species 180 Streptococcus cristatus 45634 1 0 species group 3 671232 1276 1 1328 Streptococcus anginosus 561 0 species 0 species 503 Streptococcus intermedius 1338 1 76860 1 212 Streptococcus constellatus species 0 species 0 Streptococcus sanguinis 162 1 1305 no rank 0 2608887 7 1328 species 0 1319 1 364 Streptococcus sp. 'group B' species 0 Streptococcus sp. I-P16 130 1 1156433 species 0 195 Streptococcus sp. oral taxon 431 712633 1 1759399 1 206 Streptococcus sp. A12 species 0 1156431 1 117 Streptococcus sp. I-G2 0 species 1839799 1 165 Streptococcus sp. FDAARGOS_192 species 0 Streptococcus sp. NPS 308 151 1 1902136 0 species 0 species 1346 1 359 Streptococcus iniae Streptococcus gallolyticus 610 1 315405 species 0 0 species 1 1309 Streptococcus mutans 483 1 1308 Streptococcus thermophilus 418 species 0 2 119603 805 0 species group 0 species 1 1336 Streptococcus equi 523 Streptococcus dysgalactiae 282 1 1334 0 species 0 species 324 Streptococcus uberis 1349 1 1 102684 Streptococcus infantarius 400 species 0 species 0 Streptococcus halotolerans 234 1 1814128 Streptococcus pneumoniae 714 1 1313 species 0 1 1326 Streptococcus acidominimus 230 0 species Streptococcus merionis 196 1 400065 0 species Streptococcus pluranimalium 252 1 82348 species 0 Streptococcus macedonicus 249 1 59310 species 0 0 species 226 Streptococcus parasanguinis 1318 1 species 0 1825069 1 176 Streptococcus marmotae 0 species 1 1302 Streptococcus gordonii 578 1 1303 Streptococcus oralis 468 0 species Streptococcus suis 976 1 1307 0 species Streptococcus equinus 191 1 1335 0 species 219 Streptococcus pantholopis 1811193 1 0 species 805 Streptococcus agalactiae 1311 1 species 0 1 150055 Streptococcus lutetiensis 288 0 species 28037 1 480 Streptococcus mitis species 0 1 1348 Streptococcus parauberis 388 species 0 178 Streptococcus pseudopneumoniae 257758 1 0 species no rank 0 452 1 263855 species 0 Lactobacillales bacterium 452 1 1993866 1 10 family 0 81852 19 7748 Enterococcaceae 0 genus 656 1 51668 1 51669 Tetragenococcus halophilus 656 0 species 0 genus 3 1 Vagococcus 930 3 2737 1 519472 Vagococcus teuberi 498 species 0 species 0 Vagococcus penaei 429 1 633807 1350 12 5425 Enterococcus 1 59 genus 0 1 53345 Enterococcus durans 390 species 0 0 species Enterococcus thailandicus 542 1 417368 species 0 1 1352 Enterococcus faecium 1018 2005703 1 457 Enterococcus wangshanyuanii species 0 no rank 0 2608891 3 777 0 species 2060307 1 278 Enterococcus sp. FDAARGOS_375 0 species Enterococcus sp. CR-Ec1 246 1 2057791 0 species 253 Enterococcus sp. FDAARGOS_163 2060306 1 1 37734 Enterococcus casseliflavus 247 0 species species 0 53346 1 469 Enterococcus mundtii species 0 1 1354 Enterococcus hirae 581 1 1351 Enterococcus faecalis 885 species 0 33969 2 727 Melissococcus 1 1 0 genus 0 species 726 Melissococcus plutonius 33970 1 Leuconostocaceae 4468 17 81850 family 0 4 1 1243 9 2871 Leuconostoc 1 30 0 genus 0 species Leuconostoc garlicum 124 1 255248 0 species 1252 1 351 Leuconostoc carnosum species 0 136609 1 272 Leuconostoc kimchii 0 species Leuconostoc mesenteroides 719 1 1245 239 1 2685106 0 no rank 0 species 979982 1 239 Leuconostoc sp. C2 species 0 Leuconostoc lactis 137 1 1246 species 0 1 33964 Leuconostoc citreum 254 Leuconostoc gelidum 745 1 1244 species 0 0 genus 46254 1 281 1 1247 Oenococcus oeni 281 0 species 1312 Weissella 46255 6 0 genus 1 4 0 species 1 137591 Weissella cibaria 194 species 0 1249 1 282 Weissella paramesenteroides Weissella koreensis 345 1 165096 species 0 0 species 1631871 1 341 Weissella jogaejeotgali 146 Weissella ceti 759620 1 0 species 1 41 0 family 33958 58 22799 Lactobacillaceae genus 0 2711 6 2767879 0 species 372 Lactobacillus heilongjiangensis 1074467 1 species 0 1 1007676 Lactobacillus ginsenosidimutans 479 0 species 443 Lactobacillus alimentarius 1602 1 1 392416 Lactobacillus crustorum 500 0 species 0 species 1 1847728 Lactobacillus allii 498 1612 1 419 Lactobacillus farciminis 0 species 0 genus 2032 4 2767887 1419 Lactobacillus salivarius 1624 1 species 0 1 1623 Lactobacillus ruminis 185 species 0 species 0 1 1601 Lactobacillus agilis 156 272 Lactobacillus acidipiscis 89059 1 0 species 715 2 2767889 0 genus Lactobacillus coryniformis 294 1 1610 species 0 species 0 421 Lactobacillus backii 375175 1 792 2 2767885 0 genus Lactobacillus sakei 530 1 1599 species 0 0 species Lactobacillus curvatus 262 1 28038 227 1 2767877 0 genus species 0 227 Lactobacillus kunkeei 148814 1 genus 0 3 2759736 1275 1 1582 Lactobacillus casei 479 species 0 0 species 1597 1 339 Lactobacillus paracasei species 0 1 47715 Lactobacillus rhamnosus 457 1983 Pediococcus 1253 6 0 genus 1 6 1255 1 551 Pediococcus pentosaceus 0 species 0 species group 1670797 1 234 1 1254 Pediococcus acidilactici 234 species 0 0 species 51663 1 293 Pediococcus damnosus Pediococcus claussenii 604 1 187452 0 species 0 species 114090 1 295 Pediococcus inopinatus genus 0 166 1 2767876 1603 1 166 Lactobacillus amylophilus species 0 genus 0 334 2767892 1 species 0 334 Lactobacillus paracollinoides 240427 1 0 genus 1239 2742598 3 1 1613 Lactobacillus fermentum 237 species 0 species 0 Lactobacillus reuteri 764 1 1598 0 species 97478 1 238 Lactobacillus mucosae 0 genus 329 2767890 1 0 species 1 1193095 Lactobacillus hokkaidonensis 329 genus 0 3 2767893 610 species 0 213 Lactobacillus buchneri 1581 1 0 species 1 1138822 Lactobacillus curieae 273 species 0 124 Lactobacillus parabuchneri 152331 1 162 1 0 genus 16 1578 Lactobacillus 6991 1604 1 423 Lactobacillus amylovorus 0 species species 0 Lactobacillus kefiranofaciens 324 1 267818 species 0 798 Lactobacillus delbrueckii 1584 1 0 species Lactobacillus amylolyticus 230 1 83683 0 species 1596 1 794 Lactobacillus gasseri 858 Lactobacillus johnsonii 33959 1 0 species Lactobacillus acetotolerans 298 1 1600 0 species 0 species Lactobacillus acidophilus 384 1 1579 0 no rank 4 2620435 1284 0 species 1545702 1 454 Lactobacillus sp. wkB8 Lactobacillus sp. D1501 188 1 2108362 species 0 species 0 1 2099789 Lactobacillus sp. CBA3606 173 species 0 Lactobacillus sp. CBA3605 469 1 2099788 1587 1 815 Lactobacillus helveticus species 0 species 0 305 Lactobacillus jensenii 109790 1 0 species 52242 1 316 Lactobacillus gallinarum 2767881 2 879 genus 0 0 species 1 53444 Lactobacillus lindneri 512 Lactobacillus sanfranciscensis 367 1 1625 species 0 genus 0 3 2767842 1993 1 1589 Lactobacillus pentosus 211 species 0 0 species 185 Lactobacillus paraplantarum 60520 1 1597 Lactobacillus plantarum 1590 1 species 0 2767886 3 482 genus 0 1 637971 Lactobacillus koreensis 111 species 0 Lactobacillus brevis 305 1 1580 species 0 species 0 1 267363 Lactobacillus zymae 66 909932 28 5120 Negativicutes 1 5 class 0 909929 14 3303 Selenomonadales 1 12 0 order 1843491 9 1256 Selenomonadaceae 1 7 family 0 0 genus 1 2 603 Megamonas 158846 2 0 species 1 158847 Megamonas hypermegale 601 genus 0 1 14 646 Selenomonas 970 6 Selenomonas sputigena 129 1 69823 0 species species 0 971 1 135 Selenomonas ruminantium 368 3 2637378 0 no rank species 0 Selenomonas sp. oral taxon 136 148 1 713030 species 0 1 1884263 Selenomonas sp. oral taxon 920 108 0 species 712538 1 112 Selenomonas sp. oral taxon 478 family 0 1 3 2035 Sporomusaceae 1843490 4 365348 3 2032 Pelosinus 1 7 0 genus 1 365349 Pelosinus fermentans 893 species 0 no rank 0 1132 1 2629460 species 0 Pelosinus sp. UFO1 1132 1 484770 5 1843488 Acidaminococcales 271 1 1 order 0 0 family 1 1 270 Acidaminococcaceae 909930 4 1 1 0 genus 904 3 269 Acidaminococcus 1 187327 Acidaminococcus intestini 102 species 0 species 0 166 Acidaminococcus fermentans 905 1 1541 Veillonellales 1843489 8 0 order 1 9 family 0 1 16 1532 Veillonellaceae 31977 7 0 genus 343 1 39948 0 species Dialister pneumosintes 343 1 39950 1 909928 115 0 genus 1702287 1 115 Negativicoccus massiliensis 0 species 1 906 293 genus 0 Megasphaera elsdenii 293 1 907 0 species 29465 3 765 Veillonella 1 5 genus 0 1 29466 Veillonella parvula 593 species 0 species 0 167 Veillonella rodentium 248315 1 0 no rank 33974 1 98 1 1930845 98 0 genus 0 species Ndongobacter massiliensis 98 1 1871025 Actinobacteria 173134 626 201174 phylum 0 9 1 27 84998 Coriobacteriia 2419 9 1 class 0 932 Coriobacteriales 84999 13 order 0 1 5 family 0 285 5 84107 0 genus 3 1 Coriobacterium 85 2 33870 0 species Coriobacterium glomerans 82 1 33871 1 1 0 genus 102106 2 85 Collinsella 74426 1 84 Collinsella aerofaciens species 0 0 no rank 84113 1 115 species 0 1 1531429 Coriobacteriaceae bacterium 68-1-3 115 7 1643824 Atopobiaceae 642 1 1 family 0 485 Olsenella 133925 4 0 genus 1 4 0 no rank 238 2638792 1 Olsenella sp. oral taxon 807 238 1 712411 0 species species 0 133926 1 103 Olsenella uli Olsenella sp. Marseille-P2300 140 1 1805478 species 0 genus 0 2 Atopobium 1380 1 2767353 1 154 0 genus 1 1382 Atopobium parvulum 154 species 0 1 8 0 order 1643822 13 1478 Eggerthellales family 0 22 1 Eggerthellaceae 1470 12 1643826 genus 0 2 84111 311 0 species 210 Eggerthella lenta 84112 1 0 no rank 2648737 1 101 0 species 1 502558 Eggerthella sp. YY7918 101 0 genus 255 1981050 1 species 0 255 Phoenicibacter massiliensis 1944646 1 116 84108 1 genus 0 0 species 1 84110 Slackia heliotrinireducens 116 genus 0 84162 1 97 Cryptobacterium curtum 97 1 84163 0 species 3 644652 Gordonibacter 425 3 1 genus 0 0 species 1841863 1 208 Gordonibacter massiliensis 1335613 1 214 Gordonibacter urolithinfaciens species 0 1 79603 111 0 genus 1 79604 Denitrobacterium detoxificans 111 0 species genus 0 1 1 Adlercreutzia 133 2 447020 0 species 132 Adlercreutzia equolifaciens 446660 1 860 4 1752188 0 no rank 1848255 1 123 Actinobacteria bacterium IMCC25003 species 0 345 Actinobacteria bacterium IMCC19121 1848754 1 species 0 1848756 1 211 Actinobacteria bacterium IMCC26103 0 species 1848755 1 181 Actinobacteria bacterium IMCC26077 species 0 0 class 1 1 Acidimicrobiia 837 7 84992 order 0 1 14 836 Acidimicrobiales 84993 6 1 3 family 0 84994 3 246 Acidimicrobiaceae 2 53634 Acidimicrobium 243 7 1 0 genus 236 Acidimicrobium ferrooxidans 53635 1 species 0 family 0 2448023 2 576 genus 0 1 5 576 Ilumatobacter 682522 2 1 467094 Ilumatobacter coccineus 571 0 species 3 1 0 class 6 84995 Rubrobacteria 428 order 0 1 7 425 Rubrobacterales 84996 5 418 Rubrobacteraceae 84997 4 family 0 1 6 4 1 0 genus 3 42255 Rubrobacter 412 49319 1 201 Rubrobacter xylanophilus species 0 0 species Rubrobacter radiotolerans 207 1 42256 1497346 5 2824 Thermoleophilia 1 6 0 class Solirubrobacterales 2818 4 588673 order 0 4 1 320583 3 2814 Conexibacteraceae 1 5 0 family Conexibacter 2809 2 191494 genus 0 1 1 0 species Conexibacter woesei 2808 1 191495 1 530 0 class 1760 576 165757 Actinobacteria Nakamurellales 330 3 1643684 0 order 1 1 Nakamurellaceae 329 2 85031 0 family 6 1 genus 0 323 53460 1 323 Nakamurella multipartita 53461 1 0 species 4 1 0 order 4 622452 Kineosporiales 426 1 3 0 family 83778 3 422 Kineosporiaceae 2 33981 Kineococcus 419 1 1 0 genus species 0 1 131568 Kineococcus radiotolerans 418 0 order 1915 2037 17 Actinomycetaceae 1915 17 2049 family 0 22 1 0 genus 1 1 Trueperella 102 2 1069494 0 species 1 1661 Trueperella pyogenes 101 genus 0 1 2050 215 species 0 Mobiluncus curtisii 215 1 2051 1 1653174 61 genus 0 59505 1 61 Actinotignum schaalii species 0 2 1 0 genus 2 28263 Arcanobacterium 118 1 28264 Arcanobacterium haemolyticum 116 0 species 0 genus 44 1 Actinomyces 1329 9 1654 125 Actinomyces oris 544580 1 species 0 species 0 1960083 1 139 Actinomyces gaoshouyii 0 species 74 Actinomyces sp. VUL4_3 1912795 1 0 species Actinomyces pacaensis 55 1 1852377 Actinomyces radicidentis 281 1 111015 0 species 0 no rank 611 2609248 3 0 species 1 1851395 Actinomyces sp. Chiba101 232 1 712122 Actinomyces sp. oral taxon 414 218 species 0 species 0 1 2081702 Actinomyces sp. oral taxon 897 161 0 genus 2529408 1 68 1 52773 Actinomyces meyeri 68 0 species 85014 3 307 0 order 85034 3 307 Glycomycetaceae 1 17 family 0 290 Stackebrandtia 283810 2 0 genus 1 4 1 283811 Stackebrandtia nassauensis 286 0 species 26 85004 Bifidobacteriales 3787 9 1 order 0 31953 25 3778 Bifidobacteriaceae 1 24 family 0 16 1 0 genus 19 1678 Bifidobacterium 3046 28025 1 155 Bifidobacterium animalis 0 species 1 35760 Bifidobacterium choerinum 174 0 species species 0 1 1687 Bifidobacterium coryneforme 43 Bifidobacterium pseudocatenulatum 134 1 28026 0 species 0 species Bifidobacterium pseudolongum 230 1 1694 1681 1 142 Bifidobacterium bifidum 0 species 1 158787 Bifidobacterium scardovii 174 0 species 0 species 1 1689 Bifidobacterium dentium 145 302 Bifidobacterium breve 1685 1 0 species species 0 1 33905 Bifidobacterium thermophilum 86 species 0 1 1680 Bifidobacterium adolescentis 110 122 Bifidobacterium angulatum 1683 1 species 0 1 1684 Bifidobacterium asteroides 117 species 0 species 0 1 216816 Bifidobacterium longum 405 0 species 1691 1 64 Bifidobacterium indicum species 0 58 1 Bifidobacterium catenulatum 160 2 1686 102 Bifidobacterium kashiwanohense 630129 1 0 subspecies 467 Bifidobacterium actinocoloniiforme 638619 1 0 species 110 Scardovia 196081 2 genus 0 1 4 Scardovia inopinata 106 1 78259 species 0 genus 0 2701 1 491 species 0 1 2702 Gardnerella vaginalis 491 genus 0 2 1 Parascardovia 107 2 196082 0 species Parascardovia denticolens 105 1 78258 137 2 1643683 0 order family 0 1 1 137 Acidothermaceae 85032 2 136 1 28048 0 genus 28049 1 136 Acidothermus cellulolyticus species 0 249 1 52018 0 no rank species 0 249 Actinobacteria bacterium IMCC26256 1650658 1 104 1 0 order 82 85011 Streptomycetales 61469 family 0 137 1 Streptomycetaceae 61365 81 2062 75 1883 Streptomyces 56901 709 1 0 genus Streptomyces sp. S10(2016) 394 1 1783515 species 0 564 Streptomyces alboflavus 67267 1 species 0 8448 Streptomyces albulus 68570 1 0 species Streptomyces lividans 541 1 1916 species 0 0 species 42684 1 436 Streptomyces collinus Streptomyces cyaneogriseus 333 1 68192 species 0 0 species 338 Streptomyces pratensis 1169025 1 0 species 617 Streptomyces malaysiensis 92644 1 0 species 1 1940 Streptomyces albireticuli 429 1 38300 Streptomyces pristinaespiralis 426 species 0 2049881 1 457 Streptomyces sp. XZHG99 0 species species 0 719 Streptomyces lincolnensis 1915 1 species 0 1129 Streptomyces venezuelae 54571 1 species 0 Streptomyces reticuli 479 1 1926 1642299 1 694 Streptomyces alfalfae 0 species 0 species 394 Streptomyces parvulus 146923 1 Streptomyces noursei 661 1 1971 species 0 0 species 1912 1 1288 Streptomyces hygroscopicus 0 species 1889 1 683 Streptomyces ambofaciens 1 68214 Streptomyces griseochromogenes 473 0 species 498 Streptomyces niveus 193462 1 0 species 29303 1 337 Streptomyces cattleya 0 species 0 species 1496 Streptomyces albus 1888 1 0 species 559 Streptomyces glaucescens 1907 1 1 362257 Streptomyces vietnamensis 571 species 0 species 0 285473 1 462 Streptomyces rubrolavendulae species 0 Streptomyces leeuwenhoekii 372 1 1437453 553510 1 688 Streptomyces gilvosporeus species 0 75293 1 2325 Streptomyces autolyticus species 0 1 164348 Streptomyces puniciscabiei 437 0 species 0 species group 2 1477431 3984 0 species 473 Streptomyces sampsonii 42239 1 0 species 3511 Streptomyces coelicolor 1902 1 13577 2593676 24 no rank 0 species 0 Streptomyces sp. CCM_MD2014 448 1 1561022 Streptomyces sp. TN58 433 1 234612 0 species species 0 440 Streptomyces sp. CFMR 7 1649184 1 1961713 1 443 Streptomyces sp. MOE7 0 species 1972846 1 676 Streptomyces sp. Sge12 species 0 1 465541 Streptomyces sp. Mg1 584 species 0 species 0 1 1964449 Streptomyces sp. 3211 782 0 species 862751 1 348 Streptomyces sp. SirexAA-E species 0 1 1812480 Streptomyces sp. fd1-xmd 622 Streptomyces sp. WAC00288 423 1 2094021 species 0 893 Streptomyces sp. P3 2135430 1 0 species species 0 206662 1 929 Streptomyces sp. FR-008 species 0 Streptomyces sp. S8 413 1 1837283 species 0 1661694 1 504 Streptomyces sp. Tue 6075 0 species 353 Streptomyces sp. 4F 1751294 1 1 1725411 Streptomyces sp. CdTB01 553 species 0 species 0 1 1984801 Streptomyces sp. CLI2509 443 581 Streptomyces sp. CMB-StM0423 2059884 1 0 species 0 species 1 1262452 Streptomyces sp. 769 652 Streptomyces sp. SAT1 899 1 1849967 species 0 Streptomyces sp. PAMC 26508 336 1 1265601 species 0 1 444103 Streptomyces sp. CNQ-509 454 0 species 1 1495638 Streptomyces sp. M56 879 species 0 1 1841249 Streptomyces sp. RTd22 489 0 species 650 Streptomyces scabiei 1930 1 species 0 species 0 Streptomyces violaceusniger 573 1 68280 0 species 1 1914 Streptomyces lavendulae 653 1 68249 Streptomyces pactum 1215 species 0 species 0 1616117 1 925 Streptomyces formicae 0 species 511 Streptomyces xinghaiensis 1038928 1 Streptomyces peucetius 329 1 1950 species 0 362 Streptomyces chartreusis 1969 1 species 0 1 1355015 Streptomyces pluripotens 433 0 species species 0 1 379067 Streptomyces bingchenggensis 914 Streptomyces fulvissimus 454 1 68202 0 species species 0 408015 1 283 Streptomyces xiamenensis species 0 1 47763 Streptomyces lydicus 1384 629295 2 963 0 species group species subgroup 0 1482596 1 437 1 1911 Streptomyces griseus 437 0 species species subgroup 0 1 1482558 526 526 Streptomyces globisporus 1908 1 species 0 1 33903 Streptomyces avermitilis 745 0 species species 0 1 1935 Streptomyces violaceoruber 461 species 0 1 1901 Streptomyces clavuligerus 528 5 2063 Kitasatospora 4327 16 1 genus 0 species 0 480 Kitasatospora aureofaciens 1894 1 Kitasatospora setae 1144 1 2066 0 species 1 2633591 534 0 no rank Kitasatospora sp. MMS16-BH015 534 1 2018025 0 species 1 68173 Kitasatospora albolonga 2153 0 species order 0 1 41 4549 Propionibacteriales 85009 32 0 family 1 21 2173 Nocardioidaceae 85015 13 182639 2 314 Kribbella 1 13 0 genus 1 182640 Kribbella flavida 301 0 species 0 genus 1 3 191 Micropruina 116071 2 0 species 188 Micropruina glycogenica 75385 1 0 genus 1 39 1023 Nocardioides 1839 4 species 0 1 450734 Nocardioides dokdonensis 420 0 species 249 Nocardioides sp. 78 2045452 1 no rank 0 315 1 2615069 0 species 315 Nocardioides sp. JS614 196162 1 1 2 0 genus 2044 2 370 Pimelobacter species 0 1 2045 Pimelobacter simplex 368 Aeromicrobium 254 2 2040 genus 0 1 1 Aeromicrobium erythreum 253 1 2041 0 species 2335 Propionibacteriaceae 31957 18 0 family 1 20 genus 0 125 1 203133 no rank 0 2633994 1 125 0 species Propionimicrobium sp. Marseille-P3275 125 1 1871034 0 genus 1 3 345 Propionibacterium 1743 3 0 species 1744 1 256 Propionibacterium freudenreichii 0 no rank 2608905 1 86 species 0 1 671223 Propionibacterium sp. oral taxon 193 86 2801844 1 150 genus 0 0 species 150 Pseudopropionibacterium propionicum 1750 1 genus 0 1 4 826 Tessaracoccus 72763 5 1 2635419 215 no rank 0 1909732 1 215 Tessaracoccus sp. T2.5-30 0 species 0 species 1 399497 Tessaracoccus flavescens 197 0 species Tessaracoccus flavus 159 1 1610493 1332264 1 251 Tessaracoccus aquimaris 0 species 2 1 genus 0 2 29404 Microlunatus 200 species 0 1 29405 Microlunatus phosphovorus 198 0 genus 1 1912215 266 266 Acidipropionibacterium acidipropionici 1748 1 0 species 5 1 genus 0 4 1912216 Cutibacterium 403 species 0 33010 1 141 Cutibacterium avidum 0 species 99 Cutibacterium granulosum 33011 1 1747 1 158 Cutibacterium acnes 0 species 85006 136 23828 Micrococcales 1 112 0 order 10 1 family 0 6 145357 Dermacoccaceae 629 1 1 0 genus 2 57499 Kytococcus 142 Kytococcus sedentarius 141 1 1276 species 0 226 1 745364 genus 0 571913 1 226 Luteipulveratus mongoliensis species 0 Dermacoccus 251 2 57495 genus 0 1 1 species 0 1274 1 250 Dermacoccus nishinomiyaensis no rank 0 1 577468 139 0 genus 1 2038 139 0 species Tropheryma whipplei 139 1 2039 0 family 1 6 2621 Dermabacteraceae 85020 10 2333 Brachybacterium 43668 6 0 genus 1 30 1 1331682 Brachybacterium ginsengisoli 218 0 species no rank 0 233 1 2623841 species 0 Brachybacterium sp. P6-10-X1 233 1 1903186 species 0 Brachybacterium faecium 269 1 43669 species 0 221 Brachybacterium sp. VR2415 2017485 1 2017484 1 1362 Brachybacterium sp. VM2412 0 species 1 8 0 genus 472568 2 207 Devriesea 472569 1 199 Devriesea agamarum species 0 0 genus 36739 1 75 75 Dermabacter vaginalis 1630135 1 0 species 6 1 0 family 8 85017 Promicromonosporaceae 1711 genus 0 2 1 Isoptericola 659 3 254250 231 Isoptericola variabilis 139208 1 species 0 species 0 426 Isoptericola dokdonensis 372663 1 332 1 186188 genus 0 1 186189 Xylanimonas cellulosilytica 332 0 species 1 1 0 genus 157920 3 714 Cellulosimicrobium species 0 363 Cellulosimicrobium cellulans 1710 1 no rank 0 2624466 1 350 1 1980001 Cellulosimicrobium sp. TH-20 350 species 0 0 family 36 1 Micrococcaceae 6359 36 1268 3 1 0 genus 4 1742993 Pseudarthrobacter 579 144 Pseudarthrobacter chlorophenolicus 85085 1 0 species 147 Pseudarthrobacter sulfonivorans 121292 1 0 species species 0 285 Pseudarthrobacter phenanthrenivorans 361575 1 genus 0 1 7 471 Kocuria 57493 4 1 446860 Kocuria flava 181 species 0 species 0 117 Kocuria rhizophila 72000 1 Kocuria palustris 166 1 71999 0 species 172 1742992 1 genus 0 43663 1 172 Paenarthrobacter aurescens 0 species genus 0 1645 1 106 106 Renibacterium salmoninarum 1646 1 species 0 genus 0 1 1 162 Micrococcus 1269 2 Micrococcus luteus 161 1 1270 0 species 0 genus 1 2078575 148 148 Arthrobacter sp. IHBB 11108 1618207 1 0 species 2 1868332 Neomicrococcus 166 4 1 0 genus 1 556325 Neomicrococcus aestuarii 162 0 species genus 0 1 596707 299 0 species 299 Sinomonas atrocyanea 37927 1 Arthrobacter 3739 15 1663 genus 0 35 1 3093 12 235627 0 no rank 1 2020486 Arthrobacter sp. YN 130 species 0 species 0 1652545 1 157 Arthrobacter sp. YC-RL1 0 species 2079227 1 1199 Arthrobacter sp. PGP41 Arthrobacter sp. Rue61a 115 1 1118963 species 0 Arthrobacter sp. U41 177 1 1849032 species 0 1494608 1 239 Arthrobacter sp. PAMC 25486 0 species 1357915 1 178 Arthrobacter sp. QXT-31 0 species 301 Arthrobacter sp. ERGS1:01 1704044 1 0 species 0 species 138 Arthrobacter sp. LS16 1690248 1 0 species 1 290399 Arthrobacter sp. FB24 191 1 1771959 Arthrobacter sp. ATCC 21022 116 0 species 0 species 1806905 1 152 Arthrobacter sp. ZXY-2 1 656366 Arthrobacter alpinus 406 0 species 37928 1 205 Arthrobacter crystallopoietes species 0 0 genus 2 32207 256 Rothia mucilaginosa 142 1 43675 species 0 species 0 2047 1 114 Rothia dentocariosa 2 1 0 genus 2 1742989 Glutamicibacter 225 223 Glutamicibacter arilaitensis 256701 1 species 0 family 0 3 1 Beutenbergiaceae 280 2 125316 84756 1 277 genus 0 Beutenbergia cavernae 277 1 84757 0 species 1 1 family 0 85018 3 242 Dermatophilaceae 2 1 genus 0 2 1862 Dermatophilus 241 1863 1 239 Dermatophilus congolensis 0 species 79 85022 2 0 family Jonesia 79 2 43673 0 genus 2 1 species 0 43674 1 77 Jonesia denitrificans 9 85021 Intrasporangiaceae 1004 11 1 family 0 10 1 genus 0 2 53457 Janibacter 286 species 0 Janibacter indicus 276 1 857417 Serinicoccus 267 2 265976 genus 0 3 1 1 1758689 Serinicoccus sp. JLT9 264 0 species 1 2 0 genus 53357 2 227 Intrasporangium 0 species 225 Intrasporangium calvum 53358 1 213 Arsenicicoccus 267408 2 0 genus 1 2 2663846 1 211 0 no rank 0 species 211 Arsenicicoccus sp. oral taxon 190 1658671 1 0 family 1 46 8821 Microbacteriaceae 85023 47 genus 0 1 1 Agromyces 285 2 33877 284 Agromyces aureus 453304 1 0 species 1759331 1 221 genus 0 0 species 221 Cnuibacter physcomitrellae 1619308 1 1 1 genus 0 2 1434032 Pontimonas 124 1 1159327 Pontimonas salivibrio 123 0 species 1 2 0 genus 69578 3 381 Cryobacterium no rank 0 2649013 1 177 species 0 1 1978566 Cryobacterium sp. LW097 177 670052 1 202 Cryobacterium arcticum 0 species 215 518733 1 genus 0 species 0 215 Microterricola viridarii 412690 1 0 genus 1 2 165 Microcella 337004 2 279828 1 163 Microcella alkaliphila species 0 447237 1 1291 genus 0 1291 2626248 1 0 no rank species 0 1 1795630 Frondihabitans sp. PAMC 28766 1291 2 1705353 Aurantimicrobium 108 1 1 genus 0 107 Aurantimicrobium minutum 708131 1 0 species 4 1 genus 0 2 110932 Leifsonia 513 1 1575 Leifsonia xyli 509 0 species 33886 3 471 Rathayibacter 1 4 0 genus species 0 1 145458 Rathayibacter toxicus 275 192 Rathayibacter tritici 33888 1 0 species 3 1655488 331 0 no rank 331 1655489 3 0 clade 3 529883 Rhodoluna 331 6 1 genus 0 species 0 155 Candidatus Rhodoluna planktonica 535712 1 Rhodoluna lacicola 170 1 529884 species 0 Curtobacterium 732 4 2034 0 genus 11 1 0 species 69373 1 204 Curtobacterium pusillum 257496 2 517 0 no rank 281 Curtobacterium sp. MR_MD2014 1561023 1 species 0 species 0 1905847 1 236 Curtobacterium sp. BH-2-1-1 6 1573 Clavibacter 1103 22 1 genus 0 28447 5 1081 Clavibacter michiganensis 1 232 species 0 subspecies 0 33014 1 178 Clavibacter insidiosus 0 subspecies 1 1874630 Clavibacter capsici 214 Clavibacter nebraskensis 186 1 31963 subspecies 0 Clavibacter sepedonicus 271 1 31964 0 subspecies Microbacterium 2835 14 33882 genus 0 42 1 1718 8 2609290 0 no rank Microbacterium sp. No. 7 317 1 1714373 species 0 species 0 153 Microbacterium sp. 1.5R 1916917 1 Microbacterium sp. str. 'China' 190 1 2103230 species 0 species 0 192 Microbacterium sp. TPU 3598 1938334 1 species 0 208 Microbacterium sp. XT11 367477 1 0 species 1795053 1 162 Microbacterium sp. PAMC 28756 1906742 1 345 Microbacterium sp. BH-3-3-3 species 0 0 species Microbacterium sp. CGR1 151 1 1696072 species 0 162426 1 243 Microbacterium hominis 1 84292 Microbacterium chocolatum 161 species 0 0 species 216 Microbacterium paludicola 300019 1 36805 1 231 Microbacterium aurum 0 species 2033 1 224 Microbacterium testaceum species 0 413 Brevibacteriaceae 85019 3 0 family 1 13 400 Brevibacterium 1696 2 genus 0 1 2 1703 1 398 Brevibacterium linens species 0 1074 Cellulomonadaceae 85016 6 family 0 1 4 1070 Cellulomonas 1707 5 genus 0 1 8 230 Cellulomonas gilvus 11 1 0 species no rank 0 236 1 2620175 Cellulomonas sp. PSBB021 236 1 2003551 0 species species 0 1 1708 Cellulomonas fimi 264 1711 1 332 Cellulomonas flavigena 0 species 145360 2 344 family 0 0 genus 1 1 344 Sanguibacter 60919 2 species 0 343 Sanguibacter keddieii 60920 1 2 622450 Actinopolysporales 162 3 1 0 order family 0 622451 1 159 genus 0 159 1849 1 species 0 1 414996 Actinopolyspora erythraea 159 2793 Streptosporangiales 85012 16 0 order 1 17 1 1 0 family 3 2012 Thermomonosporaceae 248 2019 2 247 Thermomonospora 1 3 genus 0 0 species 244 Thermomonospora curvata 2020 1 Streptosporangiaceae 1361 5 2004 family 0 7 1 3 1 genus 0 2 2000 Streptosporangium 597 594 Streptosporangium roseum 2001 1 0 species genus 0 1 4 757 Nonomuraea 83681 2 0 no rank 1 2593643 753 species 0 Nonomuraea sp. ATCC 55076 753 1 1909395 1 4 0 family 83676 7 1167 Nocardiopsaceae 1029 Nocardiopsis 2013 4 genus 0 1 7 species 0 459 Nocardiopsis dassonvillei 2014 1 53437 1 258 Nocardiopsis alba 0 species 0 species 1 280236 Nocardiopsis gilva 305 genus 0 1 1 134 Thermobifida 83677 2 species 0 2021 1 133 Thermobifida fusca no rank 0 227 2 1643818 genus 0 2 1 Thermobispora 227 2 147067 0 species 225 Thermobispora bispora 2006 1 Candidatus Nanopelagicales 3526 12 2039638 0 order 11 1 2162846 11 3515 0 family Candidatus Planktophila 1848 7 622681 genus 0 11 1 0 species Candidatus Planktophila limnetica 353 1 573600 0 species 1884904 1 173 Candidatus Planktophila sulfonica 1884914 1 338 Candidatus Planktophila dulcis species 0 0 species Candidatus Planktophila lacus 309 1 1884913 1884907 1 310 Candidatus Planktophila vernalis 0 species species 0 Candidatus Planktophila versatilis 354 1 1884905 2039639 4 1667 Candidatus Nanopelagicus 1 3 genus 0 species 0 Candidatus Nanopelagicus hibericus 516 1 1884915 0 species 622 Candidatus Nanopelagicus abundans 1884916 1 1 1884634 Candidatus Nanopelagicus limnes 526 0 species 3440 Frankiales 85013 7 0 order 1 39 Frankiaceae 3401 6 74712 0 family 16 1 Frankia 3385 5 1854 0 genus 11 1 species 0 Frankia alni 1825 1 1859 0 species Frankia casuarinae 666 1 106370 Frankia inefficax 408 1 298654 species 0 2632575 1 475 no rank 0 0 species 1 298653 Frankia sp. EAN1pec 475 0 order 6 1 Micromonosporales 5138 20 85008 19 28056 Micromonosporaceae 5132 74 1 0 family 1 Verrucosispora 84593 1 0 genus 673534 4 1316 Plantactinospora 1 10 0 genus 0 no rank 1306 2631981 3 1 2108470 Plantactinospora sp. BC1 384 0 species 2024580 1 429 Plantactinospora sp. KBS50 species 0 0 species Plantactinospora sp. BB1 493 1 2071627 10 1 0 genus 4 1873 Micromonospora 1073 0 no rank 352 1 2617518 species 0 Micromonospora sp. L5 352 1 648999 1003110 1 316 Verrucosispora maris 0 species 1 47850 Micromonospora aurantiaca 395 species 0 2170 Actinoplanes 1865 6 0 genus 1 21 0 species 423 Actinoplanes missouriensis 1866 1 1 196914 Actinoplanes friuliensis 403 0 species 2626549 3 1323 no rank 0 0 species 649831 1 385 Actinoplanes sp. N902-109 0 species 1 2033844 Actinoplanes sp. SE50 469 species 0 Actinoplanes sp. SE50/110 469 1 134676 0 genus 8 1 Salinispora 498 3 168694 species 0 258 Salinispora arenicola 168697 1 0 species 232 Salinispora tropica 168695 1 1 6 0 order 414714 4 2749 Catenulisporales 0 family 1 17 2743 Catenulisporaceae 414877 3 3 1 genus 0 2 414878 Catenulispora 2726 1 304895 Catenulispora acidiphila 2723 species 0 195 1 order 0 159 85007 Corynebacteriales 37398 4 85028 Tsukamurellaceae 655 1 1 family 0 genus 0 6 1 Tsukamurella 654 3 2060 0 species 409 Tsukamurella tyrosinosolvens 57704 1 species 0 1 2061 Tsukamurella paurometabola 239 1 23 0 family 1653 52 8322 Corynebacteriaceae genus 0 1 98 8299 Corynebacterium 1716 51 Corynebacterium mustelae 127 1 571915 species 0 1408191 1 166 Corynebacterium deserti 0 species 1 146827 Corynebacterium simulans 106 species 0 species 0 Corynebacterium epidermidicanis 101 1 1050174 0 species Corynebacterium glyciniphilum 99 1 1404244 species 0 Corynebacterium falsenii 161 1 108486 0 species 187491 1 119 Corynebacterium glaucum species 0 1 28028 Corynebacterium flavescens 100 1718 1 428 Corynebacterium glutamicum 0 species 161895 1 105 Corynebacterium phocae 0 species 1705 1 119 Corynebacterium stationis 0 species 0 species 1 401472 Corynebacterium ureicelerivorans 79 1 169292 Corynebacterium aurimucosum 86 species 0 147 Corynebacterium crudilactis 1652495 1 0 species Corynebacterium testudinoris 116 1 136857 species 0 0 species 1 1727 Corynebacterium variabile 188 0 species Corynebacterium marinum 186 1 349751 species 0 142 Corynebacterium kutscheri 35755 1 0 species Corynebacterium doosanense 109 1 1121358 1 575200 Corynebacterium maris 203 species 0 species 0 1 161879 Corynebacterium kroppenstedtii 47 Corynebacterium ammoniagenes 100 1 1697 species 0 species 0 1 38305 Corynebacterium vitaeruminis 234 Corynebacterium urealyticum 107 1 43771 0 species 168 Corynebacterium aquilae 203263 1 0 species 0 no rank 2 2624378 174 96 Corynebacterium sp. NML98-0116 702967 1 species 0 0 species 78 Corynebacterium sp. ATCC 6931 1487956 1 1072256 1 1256 Corynebacterium uterequi 0 species 1 161899 Corynebacterium singulare 108 0 species 1 38289 Corynebacterium jeikeium 149 species 0 Corynebacterium atypicum 76 1 191610 0 species 0 species Corynebacterium efficiens 150 1 152794 1 1719 Corynebacterium pseudotuberculosis 140 0 species 92 Corynebacterium imitans 156978 1 species 0 127 Corynebacterium callunae 1721 1 0 species species 0 225326 1 171 Corynebacterium halotolerans 1 1231000 Corynebacterium lactis 95 species 0 Corynebacterium argentoratense 214 1 42817 0 species 161896 1 73 Corynebacterium camporealensis 0 species species 0 162 Corynebacterium cystitidis 35757 1 1230998 1 184 Corynebacterium frankenforstense 0 species 0 species Corynebacterium terpenotabidum 156 1 89154 0 species 258224 1 73 Corynebacterium resistens 1 92706 [Brevibacterium] flavum 177 0 species species 0 Corynebacterium humireducens 257 1 1223514 species 0 43770 1 231 Corynebacterium striatum 137 Corynebacterium ulcerans 65058 1 0 species 1717 1 171 Corynebacterium diphtheriae species 0 species 0 1 191493 Corynebacterium sphenisci 184 species 0 160386 1 101 Corynebacterium casei 33 1 family 0 31 85025 Nocardiaceae 9599 23 1827 Rhodococcus 7217 128 1 genus 0 2382 192944 12 no rank 0 0 species 135 Rhodococcus sp. WMMA185 679318 1 species 0 1 935199 Rhodococcus sp. p52 238 species 0 1 1805827 Rhodococcus sp. MTM3W5.2 347 species 0 134 Rhodococcus sp. BH4 1807790 1 0 species 1 1723645 Rhodococcus sp. 008 150 165 Rhodococcus sp. 2G 1570939 1 0 species 0 species 1045808 1 192 Rhodococcus sp. YL-1 222 Rhodococcus sp. PBTS 1 1653478 1 species 0 0 species 1653479 1 181 Rhodococcus sp. PBTS 2 1033922 1 283 Rhodococcus sp. WB1 species 0 Rhodococcus sp. B7740 185 1 1564114 0 species 0 species 1727214 1 150 Rhodococcus sp. H-CA8f species 0 Rhodococcus qingshengii 307 1 334542 1 1828 Rhodococcus fascians 239 species 0 species 0 1 1830 Rhodococcus ruber 341 species 0 1 1829 Rhodococcus rhodochrous 243 269 Rhodococcus aetherivorans 191292 1 0 species 399 Rhodococcus jostii 132919 1 species 0 species 0 1 1833 Rhodococcus erythropolis 481 240 Rhodococcus hoagii 43767 1 species 0 311 Rhodococcus pyridinivorans 103816 1 species 0 1877 Rhodococcus opacus 37919 1 0 species 18 1 genus 0 7 1817 Nocardia 2349 1 37330 Nocardia nova 326 0 species 37329 1 361 Nocardia farcinica species 0 0 species 455432 1 282 Nocardia terpenica 315 Nocardia seriolae 37332 1 0 species species 0 629 Nocardia brasiliensis 37326 1 species 0 Nocardia cyriacigeorgica 418 1 135487 2 85029 490 0 family genus 0 490 2 37914 1 499555 Dietzia timorensis 145 0 species 1 2617939 345 0 no rank species 0 345 Dietzia sp. oral taxon 368 712270 1 0 family 1 2 1528 Gordoniaceae 85026 9 Gordonia 1526 8 2053 genus 0 15 1 species 0 253 Gordonia bronchialis 2054 1 2 2657482 398 no rank 0 species 0 236 Gordonia sp. KTR9 337191 1 species 0 162 Gordonia sp. YC-JH1 2059875 1 0 species Gordonia terrae 230 1 2055 1 1136941 Gordonia phthalatica 212 species 0 0 species 1 84595 Gordonia polyisoprenivorans 210 208 Gordonia iterans 1004901 1 0 species 121 697024 1 no rank 0 121 1 1847725 genus 0 0 species 121 Lawsonella clevelandensis 1528099 1 1762 57 16339 Mycobacteriaceae 1 27 0 family 3675 1866885 13 genus 0 1771 1 323 Mycobacterium phlei 0 species 1 1800 Mycobacterium chubuense 276 species 0 442 Mycobacterium gilvum 1804 1 0 species 254 Mycobacterium litorale 758802 1 0 species 36814 1 184 Mycobacterium rhodesiae species 0 0 species Mycobacterium vanbaalenii 294 1 110539 1795 1 195 Mycobacterium neoaurum species 0 Mycobacterium goodii 282 1 134601 species 0 1791 1 399 Mycobacterium aurum 0 species 1 1797 Mycobacterium thermoresistibile 184 0 species 0 species 1766 1 209 Mycobacterium fortuitum 1 1810 Mycobacterium vaccae 334 0 species 0 species Mycobacterium smegmatis 299 1 1772 1073531 2 591 genus 0 0 species 268 Mycobacterium sinense 875328 1 323 Mycobacterium terrae 1788 1 species 0 161 Hoyosella 697025 2 0 genus 1 4 639313 1 157 Hoyosella subflava species 0 670516 5 2620 0 genus Mycobacterium abscessus 1961 1 36809 species 0 species 0 Mycobacterium immunogenum 218 1 83262 0 species 1 1578165 Mycobacterium saopaulense 130 species 0 1 1520670 Mycobacterium stephanolepidis 121 Mycobacterium chelonae 190 1 1774 species 0 Mycobacterium 9265 34 1763 0 genus 386 1 0 species 1809 1 240 Mycobacterium ulcerans species 0 Mycobacterium haemophilum 109 1 29311 0 species group 225 2249310 1 0 species 1 722731 Mycobacterium shigaense 225 1768 1 280 Mycobacterium kansasii 0 species species 0 1 261524 Mycobacterium liflandii 276 77643 4 897 species group 0 1773 3 770 Mycobacterium tuberculosis 1 288 0 species biotype 0 33894 1 237 Mycobacterium africanum 0 biotype 1765 1 245 Mycobacterium bovis species 0 Mycobacterium canettii 127 1 78331 0 species 1 1769 Mycobacterium leprae 74 0 no rank 13 2642494 2969 205 Mycobacterium sp. MCS 164756 1 species 0 1273687 1 206 Mycobacterium sp. VKM Ac-1817D 0 species 81 Mycobacterium sp. MOTT36Y 1168287 1 0 species species 0 219 Mycobacterium sp. WY10 1920667 1 0 species Mycobacterium sp. EPa45 214 1 1545728 283 Mycobacterium sp. djl-10 1879023 1 0 species 487 Mycobacterium sp. JS623 212767 1 0 species 1 2051552 Mycobacterium sp. PYR15 241 species 0 species 0 1682113 1 276 Mycobacterium sp. YC-RL4 189918 1 227 Mycobacterium sp. KMS species 0 species 0 195 Mycobacterium sp. NRRL B-3805 1570328 1 species 0 Mycobacterium sp. JLS 207 1 164757 Mycobacterium sp. QIA-37 128 1 1561223 species 0 species 0 567 Mycobacterium marinum 1781 1 2914 120793 8 0 species group 4 1767 Mycobacterium intracellulare 678 175 1 0 species 1 1203599 Mycobacterium yongonense 126 0 subspecies Mycobacterium indicus pranii 81 1 35617 0 subspecies 296 Mycobacterium chimaera 222805 1 subspecies 0 Mycobacterium avium 1772 1 1764 species 0 0 species 339268 1 222 Mycobacterium colombiense species 0 1138383 1 76 Mycobacterium paraintracellulare 166 Mycobacterium marseillense 701042 1 species 0 0 species 328 Mycobacterium dioxanotrophicus 482462 1 Segniliparaceae 149 2 316606 family 0 1 1 0 genus 148 1 286801 species 0 Segniliparus rotundus 148 1 286802 0 order 1 3 1124 Geodermatophilales 1643682 7 Geodermatophilaceae 1121 6 85030 0 family 22 1 294 88138 1 0 genus 1 477641 Modestobacter marinus 294 0 species Blastococcus 498 2 38501 0 genus 2 1 species 0 496 Blastococcus saxobsidens 138336 1 0 genus 1 1 Geodermatophilus 307 2 1860 1861 1 306 Geodermatophilus obscurus 0 species order 0 1 10 11673 Pseudonocardiales 85010 40 39 2070 Pseudonocardiaceae 11663 82 1 0 family 435 Kibdelosporangium 2029 2 genus 0 1 1 Kibdelosporangium phytohabitans 434 1 860235 species 0 4 1 genus 0 2 1835 Saccharopolyspora 396 species 0 392 Saccharopolyspora erythraea 1836 1 0 genus 219 1851 1 1852 1 219 Saccharomonospora viridis 0 species 1 34 0 genus 1813 7 2711 Amycolatopsis 0 species 1 1814 Amycolatopsis methanolica 312 1 31958 Amycolatopsis orientalis 700 0 species 0 species 432 Amycolatopsis japonica 208439 1 0 species Amycolatopsis mediterranei 468 1 33910 no rank 0 2618356 2 765 species 0 1 1911175 Amycolatopsis sp. BJA-103 355 1 1896961 Amycolatopsis sp. AA4 410 species 0 genus 0 1 26 2951 Pseudonocardia 1847 8 0 no rank 2465 2619320 6 0 species 414 Pseudonocardia sp. EC080619-01 1096856 1 0 species 1 1688404 Pseudonocardia sp. EC080610-09 453 0 species 1 1690815 Pseudonocardia sp. HH130630-07 463 Pseudonocardia sp. EC080625-04 376 1 1096868 species 0 1641402 1 321 Pseudonocardia sp. HH130629-09 species 0 Pseudonocardia sp. AL041005-10 438 1 445576 0 species species 0 240495 1 460 Pseudonocardia dioxanivorans 0 genus 492 165301 1 0 species 1586287 1 492 Lentzea guizhouensis 3 40566 Actinosynnema 1005 6 1 0 genus 0 species 513 Actinosynnema mirum 40567 1 species 0 1 42197 Actinosynnema pretiosum 486 Saccharothrix 489 2 2071 genus 0 2 1 1 103731 Saccharothrix espanaensis 487 0 species 1871 Actinoalloteichus 65496 6 0 genus 1 27 1 1470176 Actinoalloteichus hoggarensis 340 0 species 1 1612552 Actinoalloteichus sp. ADI127-7 549 0 species 1 340345 Actinoalloteichus hymeniacidonis 181 0 species 2 2644606 774 0 no rank 1 1612551 Actinoalloteichus sp. GBA129-24 414 0 species species 0 360 Actinoalloteichus sp. AHMU CJ021 2072503 1 2 43356 Kutzneria 375 7 1 0 genus 43357 1 368 Kutzneria albida 0 species 350 Alloactinosynnema 674734 2 0 genus 1 1 no rank 0 2636053 1 349 Alloactinosynnema sp. L-07 349 1 1653480 species 0 Prauserella 287 2 142577 0 genus 1 1 0 species 1 530584 Prauserella marina 286 phylum 0 253 4 67819 class 0 1 2 253 Fimbriimonadia 1663419 4 0 order 251 1663425 3 1 2 family 0 1663426 3 251 Fimbriimonadaceae 1 2 0 genus 1005038 2 249 Fimbriimonas Fimbriimonas ginsengisoli 247 1 1005039 species 0 0 no rank 1859062 1 215 genus 0 262406 1 215 1 166501 Thermobaculum terrenum 215 species 0 544448 101 45358 Tenericutes 1 8 0 phylum 1429 713063 2 0 no rank 0 species Tenericutes bacterium MZ-XQ 672 1 1911683 Tenericutes bacterium MO-XQ 757 1 1911684 0 species no rank 0 665 1 2799557 1912503 1 665 genus 0 no rank 0 2624196 1 665 0 species 665 Candidatus Izimaplasma sp. HR1 1541959 1 1 112 0 class 31969 97 43256 Mollicutes Entomoplasmatales 18780 39 186328 0 order 42 1 14 33925 Entomoplasmataceae 5577 22 1 family 0 1 8 genus 0 46238 5 1629 Entomoplasma species 0 518 Entomoplasma somnilux 215578 1 1 74700 Entomoplasma freundtii 154 species 0 0 species Entomoplasma melaleucae 541 1 81459 species 0 214888 1 408 Entomoplasma luminosum genus 0 1 51 3926 Mesoplasma 46239 8 216427 1 522 Mesoplasma chauliocola species 0 1 138853 Mesoplasma lactucae 345 species 0 544 Mesoplasma tabanidae 219745 1 0 species 0 species Mesoplasma coleopterae 443 1 324078 0 species 2149 1 556 Mesoplasma entomophilum 0 species 1 2151 Mesoplasma florum 1008 1 225999 Mesoplasma syrphidae 457 species 0 Spiroplasmataceae 13161 24 2131 family 0 24 1 genus 0 152 1 Spiroplasma 13137 23 2132 species 0 Spiroplasma helicoides 670 1 216938 0 species Spiroplasma floricola 905 1 216937 species 0 Spiroplasma sabaudiense 404 1 216944 216934 1 639 Spiroplasma corruscae species 0 0 species 428 Spiroplasma apis 2137 1 Spiroplasma mirum 381 1 2144 0 species 0 species Spiroplasma chrysopicola 404 1 216933 0 species 1 47834 Spiroplasma kunkelii 584 Spiroplasma syrphidicola 443 1 216945 0 species 1 1114980 Spiroplasma atrichopogonis 383 species 0 species 0 819 Spiroplasma taiwanense 2145 1 1 362837 Spiroplasma cantharicola 737 0 species 1 216946 Spiroplasma turonicum 841 species 0 0 no rank 988 2637901 2 Spiroplasma sp. TU-14 494 1 1898044 species 0 1 1914410 Spiroplasma sp. NBRC 100390 494 0 species 1 2139 Spiroplasma clarkii 559 0 species 0 species 1 216942 Spiroplasma litorale 812 species 0 598 Spiroplasma citri 2133 1 Spiroplasma eriocheiris 460 1 315358 species 0 Spiroplasma monobiae 488 1 2136 0 species species 0 Spiroplasma diminutum 640 1 216936 1 216935 Spiroplasma culicicola 802 species 0 1 91 0 order 2085 44 20614 Mycoplasmatales 2092 43 20523 Mycoplasmataceae 1 65 family 0 0 genus 139 1 Mycoplasma 14049 27 2093 105 Mycoplasma pneumoniae 2104 1 0 species 29501 1 1461 Mycoplasma haemofelis 0 species 351 1 2683645 no rank 0 species 0 Mycoplasma sp. (ex Biomphalaria glabrata) 351 1 1749074 species 0 1 28227 Mycoplasma penetrans 708 1 29554 Mycoplasma canadense 438 species 0 1 2099 Mycoplasma hyopneumoniae 1192 species 0 0 species group 3 656088 3028 0 species Mycoplasma leachii 768 1 2105 Mycoplasma capricolum 815 1 2095 0 species Mycoplasma mycoides 1445 1 2102 species 0 species 0 86660 1 333 Mycoplasma dispar 51365 1 540 Mycoplasma yeatsii species 0 species 0 437 Mycoplasma bovoculi 45362 1 Mycoplasma ovis 169 1 171632 0 species Mycoplasma hominis 731 1 2098 species 0 species 0 446 Mycoplasma haemocanis 136241 1 2111 1 251 Mycoplasma arthritidis species 0 0 species 1 65123 Mycoplasma wenyonii 144 species 0 50052 1 417 Mycoplasma crocodyli species 0 241 Mycoplasma genitalium 2097 1 2118 1 498 Mycoplasma mobile species 0 species 0 1 984991 Mycoplasma parvum 382 species 0 490 Mycoplasma hyorhinis 2100 1 species 0 1 2128 Mycoplasma flocculare 237 1 2096 Mycoplasma gallisepticum 426 0 species Mycoplasma putrefaciens 664 1 2123 0 species 1 57372 Mycoplasma suis 221 species 0 Ureaplasma 1002 3 2129 0 genus 2 1 species 0 502 Ureaplasma parvum 134821 1 species 0 2130 1 498 Ureaplasma urealyticum 0 genus 12 2767358 5407 0 species 1 48003 Mycoplasma pullorum 335 Mycoplasma pulmonis 511 1 2107 0 species species 0 365 Mycoplasma bovirhinis 29553 1 0 species 921 Mycoplasma bovis 28903 1 29555 1 473 Mycoplasma canis species 0 2112 1 292 Mycoplasma bovigenitalium 0 species 494 Mycoplasma fermentans 2115 1 0 species 249 Mycoplasma californicum 2113 1 0 species 0 species 541 Mycoplasma agalactiae 2110 1 Mycoplasma arginini 424 1 2094 0 species species 0 476 Mycoplasma cynos 171284 1 species 0 Mycoplasma synoviae 326 1 2109 3750 Acholeplasmatales 186329 13 order 0 1 9 Acholeplasmataceae 3741 12 2146 0 family 20 1 24 1 0 genus 5 2147 Acholeplasma 2145 Acholeplasma brassicae 289 1 61635 0 species 0 species 498 Acholeplasma laidlawii 2148 1 species 0 35623 1 562 Acholeplasma oculi 0 species 772 Acholeplasma palmae 38986 1 Candidatus Phytoplasma 1576 6 33926 0 genus 16 1 85632 1 293 species group 0 0 species Candidatus Phytoplasma australiense 293 1 59748 species group 0 3 85620 902 species 0 313 Aster yellows witches'-broom phytoplasma 229545 1 0 species 1 202462 Maize bushy stunt phytoplasma 299 species 0 1 100379 Onion yellows phytoplasma 290 species group 0 365 85630 1 0 species 365 Candidatus Phytoplasma mali 37692 1 3945947 1798711 156 0 clade 0 phylum 29 1 Cyanobacteria 3945947 156 1117 Pleurocapsales 4536 7 52604 order 0 14 1 1 28 0 family 1890498 4 3824 Dermocarpellaceae genus 0 1 20 3796 Stanieria 102115 3 0 species Stanieria cyanosphaera 1519 1 102116 0 no rank 1 2642663 2257 1 1807358 Stanieria sp. NIES-3757 2257 0 species family 0 1 11 698 Hyellaceae 1890500 2 44474 1 687 genus 0 Pleurocapsa minor 687 1 54308 species 0 4 1890505 Chroococcidiopsidales 1773 4 1 order 0 1 23 family 0 1890528 3 1769 Chroococcidiopsidaceae 4 1 genus 0 2 54298 Chroococcidiopsis 1746 species 0 54299 1 1742 Chroococcidiopsis thermalis order 0 1 131 3871901 Synechococcales 1890424 58 1 17 0 family 1213 5 3834099 Prochloraceae 1218 4 3834082 Prochlorococcus 1 151 genus 0 2627481 2 802381 0 no rank Prochlorococcus sp. MIT 0604 796744 1 1501268 species 0 0 species 5637 Prochlorococcus sp. MIT 0801 1501269 1 1219 1 3031550 Prochlorococcus marinus 0 species family 0 41 1 Synechococcaceae 31020 33 1890426 Cyanobium 1380 3 167375 0 genus 25 1 0 no rank 1 2627006 673 1851505 1 673 Cyanobium sp. NIES-981 species 0 0 species 59930 1 682 Cyanobium gracile 0 genus 1 146785 196 0 species 146786 1 196 Thermosynechococcus elongatus 1 2 genus 0 13034 2 788 Dactylococcopsis 292566 1 786 Dactylococcopsis salina 0 species 28615 Synechococcus 1129 26 genus 0 1 375 0 species 1 33070 Synechococcus lividus 135 27895 23 2626047 no rank 0 3495 Synechococcus sp. KORDI-52 585425 1 species 0 316278 1 475 Synechococcus sp. RCC307 0 species 0 species 1 321327 Synechococcus sp. JA-3-3Ab 159 448 Synechococcus sp. SynAce01 1916956 1 species 0 29410 1 1232 Synechococcus sp. WH 8103 0 species 0 species 1 1280380 Synechococcus sp. KORDI-100 679 species 0 1 110662 Synechococcus sp. CC9605 10242 species 0 Synechococcus sp. UTEX 2973 210 1 1350461 258 Synechococcus sp. PCC 6312 195253 1 0 species Synechococcus sp. PCC 8807 177 1 195248 0 species 0 species 1 84588 Synechococcus sp. WH 8102 1299 species 0 1827144 1 198 Synechococcus sp. NIES-970 689 Synechococcus sp. PCC 7502 1173263 1 species 0 species 0 535 Synechococcus sp. KORDI-49 585423 1 species 0 166314 1 5523 Synechococcus sp. WH 8109 1 316279 Synechococcus sp. CC9902 474 species 0 1 64471 Synechococcus sp. CC9311 449 0 species species 0 Synechococcus sp. PCC 7003 184 1 374981 species 0 Synechococcus sp. WH 7803 421 1 32051 0 species Synechococcus sp. PCC 73109 206 1 374982 0 species 195498 1 202 Synechococcus sp. PCC 7117 species 0 321332 1 197 Synechococcus sp. JA-2-3B'a(2-13) species 0 Synechococcus sp. PCC 7002 143 1 32049 0 species 1 32046 Synechococcus elongatus 210 family 0 1 4 1446 Pseudanabaenaceae 1890436 3 1442 Pseudanabaena 1152 2 genus 0 1 7 0 no rank 1435 1 2593292 0 species 82654 1 1435 Pseudanabaena sp. PCC 7367 1 1 0 family 5 1890428 Merismopediaceae 1426 genus 0 1 27 1425 Synechocystis 1142 4 no rank 0 3 2640012 1398 species 0 Synechocystis sp. PCC 6714 924 1 1147 237 Synechocystis sp. IPPAS B-1465 2116702 1 0 species 1 1148 Synechocystis sp. PCC 6803 237 0 species 1846 Leptolyngbyaceae 1890438 6 0 family 1 12 5 47251 Leptolyngbya 1834 19 1 genus 0 species 0 366 Leptolyngbya boryana 1184 1 0 no rank 2650499 3 1449 species 0 1 111781 Leptolyngbya sp. PCC 7376 747 species 0 1752064 1 381 Leptolyngbya sp. NIES-3755 species 0 1080068 1 321 Leptolyngbya sp. O-77 1190 Acaryochloridaceae 1890429 3 0 family 1 2 155977 2 1188 Acaryochloris 1 3 0 genus 1 155978 Acaryochloris marina 1185 0 species 2303730 2 743 family 0 2 170610 Halomicronema 743 2 1 0 genus 1209493 1 741 Halomicronema hongdechloris 0 species 32698 1301283 46 subclass 0 order 0 1 66 10756 Oscillatoriales 1150 21 4960 Microcoleaceae 1892252 5 0 family 1 24 genus 0 1 1 Trichodesmium 4415 2 1205 species 0 4414 Trichodesmium erythraeum 1206 1 11 1 genus 0 2 44471 Microcoleus 521 1 2642155 510 0 no rank species 0 1173027 1 510 Microcoleus sp. PCC 7113 3 1892249 Cyanothecaceae 279 34 1 0 family 1 35 genus 0 43988 2 245 Cyanothece no rank 0 2649277 1 210 Cyanothece sp. PCC 7425 210 1 395961 species 0 211 Coleofasciculaceae 1892251 3 0 family 1 13 genus 0 4 1 Geitlerinema 198 2 63132 194 2648775 1 no rank 0 194 Geitlerinema sp. PCC 7407 1173025 1 species 0 3 1 family 0 3 1892255 Gomontiellaceae 933 0 genus 1 7 930 Crinalium 241421 2 species 0 241425 1 923 Crinalium epipsammum 41 1 family 0 6 1892254 Oscillatoriaceae 4307 2387 Oscillatoria 1158 3 genus 0 1 8 1201 Oscillatoria nigro-viridis 482564 1 species 0 1 118323 Oscillatoria acuminata 1178 species 0 1155738 2 1879 Moorea 1 6 0 genus 1873 Moorea producens 1155739 1 0 species 21942 Chroococcales 1118 25 order 0 1 49 1890452 3 1533 Cyanobacteriaceae 1 3 family 0 1 8 0 genus 102234 2 1530 Cyanobacterium Cyanobacterium aponinum 1522 1 379064 species 0 1890449 4 3559 Microcystaceae 1 12 family 0 1125 3 3547 Microcystis 1 12 0 genus 1126 1 2545 Microcystis aeruginosa 0 species 1 2643300 990 no rank 0 1 1967666 Microcystis sp. MC19 990 species 0 8 1890464 Chroococcaceae 10033 29 1 0 family 1 4 0 genus 268175 2 5988 Chondrocystis no rank 0 5984 1 2648896 1 2005460 Chondrocystis sp. NIES-4102 5984 species 0 1 8 genus 0 669357 3 3245 Geminocystis no rank 0 2 2625037 3237 Geminocystis sp. NIES-3709 1303 1 1617448 species 0 0 species Geminocystis sp. NIES-3708 1934 1 1615909 102231 2 771 Gloeocapsa 1 1 genus 0 no rank 0 770 2623012 1 0 species 1 1173026 Gloeocapsa sp. PCC 7428 770 11 1 family 0 9 1890450 Aphanothecaceae 6768 1363 2 2546365 0 genus species 0 2 2546366 1363 0 strain 1 395962 Cyanothece sp. PCC 8802 696 Cyanothece sp. PCC 8801 667 1 41431 strain 0 263510 1 824 0 genus species 0 1 2546360 824 824 Cyanothece sp. ATCC 51142 43989 1 strain 0 0 genus 1453359 1 1325 1325 Candidatus Atelocyanobacterium thalassa 713887 1 0 species 2 28070 2654 genus 0 1373 2546359 1 species 0 1 497965 Cyanothece sp. PCC 7822 1373 strain 0 1281 1 2546356 species 0 0 strain 1281 Cyanothece sp. PCC 7424 65393 1 0 no rank 591 2 92682 76023 2 591 Halothece 1 3 genus 0 588 2632878 1 no rank 0 Halothece sp. PCC 7418 588 1 65093 0 species 749 1 1983111 no rank 0 718217 1 749 cyanobacterium endosymbiont of Epithemia turgida species 0 class 0 307596 5 441 2 1 order 0 5 307595 Gloeobacterales 441 4 1890422 Gloeobacteraceae 439 9 1 family 0 430 Gloeobacter 33071 3 0 genus 1 1 species 0 33072 1 232 Gloeobacter violaceus 1 1416614 Gloeobacter kilaueensis 197 0 species Nostocales 33820 34 1161 order 0 86 1 36 1 family 0 3 1185 Rivulariaceae 2594 1 2 genus 0 373984 2 2558 Rivularia 2556 1 2676603 0 no rank Rivularia sp. PCC 7116 2556 1 373994 0 species 1 40 family 0 1162 18 16779 Nostocaceae 3 264688 Trichormus 2117 2 1 0 genus 264691 1 1119 Trichormus variabilis 0 species species 0 996 Trichormus azollae 1164 1 1 14 0 genus 1163 4 3166 Anabaena 1056 Anabaena cylindrica 1165 1 species 0 0 no rank 2 2619674 2096 Anabaena sp. 90 1071 1 46234 0 species species 0 Anabaena sp. WA102 1025 1 1647413 Nostoc 11456 10 1177 genus 0 62 1 species 0 1306274 1 1653 Nostoc flagelliforme 0 no rank 8849 7 2593658 species 0 1085 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1261031 1 species 0 1 1869241 Nostoc sp. CENA543 1283 991 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1618022 1 species 0 Nostoc sp. PCC 7120 1075 1 103690 0 species species 0 1 28072 Nostoc sp. PCC 7524 1715 Nostoc sp. NIES-3756 1278 1 1751286 0 species 0 species 1 317936 Nostoc sp. PCC 7107 1422 Nostoc punctiforme 892 1 272131 species 0 family 0 2661849 8 9170 1186 8 9170 Calothrix 1 31 0 genus no rank 0 2619626 6 7927 0 species 2005462 1 1697 Calothrix sp. NIES-3974 0 species 1 1954171 Calothrix sp. NIES-2098 1347 1368 Calothrix sp. NIES-4101 2005461 1 0 species 1 2005469 Calothrix sp. NIES-4071 1633 species 0 0 species 1 99598 Calothrix sp. PCC 7507 945 species 0 1 1337936 Calothrix sp. 336/3 937 1212 Calothrix parietina 32054 1 species 0 0 no rank 1021 1 1219117 1940762 1 1021 Nostocales cyanobacterium HT-58-2 species 0 3 1892263 Hapalosiphonaceae 4170 2 1 0 family 1190 2 4168 Fischerella 1 4 genus 0 1 494603 4164 no rank 0 Fischerella sp. NIES-3754 4164 1 1752063 0 species 0 phylum 1297 34 4538 19 1 class 0 34 188787 Deinococci 4538 2 2762275 197 0 order 332247 2 197 0 family 1 6 genus 0 332248 2 197 Truepera 0 species Truepera radiovictrix 191 1 332249 order 0 18 1 Thermales 2144 16 68933 Thermaceae 2126 15 188786 0 family 17 1 genus 0 239 1 208447 1 187137 Oceanithermus profundus 239 species 0 1 6 0 genus 65551 3 393 Meiothermus 154 Meiothermus silvanus 52022 1 species 0 species 0 1 277 Meiothermus ruber 233 2 1 0 genus 2 186191 Marinithermus 96 0 species 1 186192 Marinithermus hydrothermalis 94 0 genus 14 1 Thermus 1381 8 270 0 species Thermus brockianus 147 1 56956 1 456163 Thermus parvatiensis 184 0 species no rank 0 136 1 2619321 species 0 Thermus sp. CCB_US3_UF1 136 1 1111069 144 Thermus aquaticus 271 1 0 species 227 Thermus oshimai 56957 1 species 0 1 37636 Thermus scotoductus 105 0 species species 0 274 1 424 Thermus thermophilus 0 order 38 1 Deinococcales 2178 15 118964 14 183710 Deinococcaceae 2140 5 1 0 family Deinococcus 2135 13 1298 0 genus 39 1 188 Deinococcus maricopensis 309887 1 0 species 168 Deinococcus actinosclerus 1768108 1 0 species Deinococcus swuensis 204 1 1182571 species 0 167 1 2623546 no rank 0 167 Deinococcus sp. NW-56 2080419 1 species 0 species 0 1 1182568 Deinococcus puniceus 143 0 species 1 502394 Deinococcus gobiensis 224 0 species Deinococcus radiodurans 144 1 1299 species 0 112 Deinococcus geothermalis 68909 1 species 0 172 Deinococcus soli Cha et al. 2016 1309411 1 Deinococcus proteolyticus 347 1 55148 0 species species 0 310783 1 102 Deinococcus deserti 432329 1 125 Deinococcus peraridilitoris 0 species 1 200938 204 phylum 0 118001 1 204 class 0 204 189769 1 0 order family 0 189770 1 204 genus 0 204 393029 1 204 Desulfurispirillum indicum 936456 1 species 0 0 phylum 9 200930 3980 class 0 1 13 3980 Deferribacteres 68337 9 191393 8 3967 Deferribacterales 1 13 0 order 0 family 19 1 Deferribacteraceae 3954 7 191394 2351 1 1169 genus 0 2352 1 1169 Flexistipes sinusarabici 0 species 0 genus 1 1 1730 Deferribacter 53572 2 1 197162 Deferribacter desulfuricans 1729 species 0 0 genus 545865 1 650 species 0 477976 1 650 Calditerrivibrio nitroreducens genus 0 4 1 Denitrovibrio 386 2 117999 0 species 1 118000 Denitrovibrio acetiphilus 382 22445 57 203691 phylum 0 57 203692 Spirochaetia 22445 65 1 class 0 0 order 9 1643688 3288 0 family 1 18 3288 Leptospiraceae 170 9 17 1 genus 0 6 171 Leptospira 3096 600 Leptospira biflexa 172 1 0 species 1306 Leptospira interrogans 173 1 species 0 Leptospira alstonii 316 1 28452 0 species 0 species 568 Leptospira borgpetersenii 174 1 Leptospira santarosai 289 1 28183 species 0 Turneriella 174 2 338321 0 genus 4 1 species 0 29510 1 170 Turneriella parva 0 order 1 38 13863 Spirochaetales 136 40 family 0 1 40 4502 Spirochaetaceae 137 22 1911556 2 231 Sediminispirochaeta 1 2 genus 0 229 Sediminispirochaeta smaragdinae 55206 1 0 species 1 6 0 genus 157 12 2468 Treponema species 0 300 Treponema succinifaciens 167 1 0 species Treponema putidum 353 1 221027 1 88058 Treponema primitia 335 0 species 150829 1 141 Treponema azotonutricium species 0 1 53435 Treponema paraluiscuniculi 125 0 species Treponema caldarium 197 1 215591 0 species no rank 0 1 2638727 191 1 1539298 Treponema sp. OMZ 838 191 species 0 species 0 160 1 75 Treponema pallidum Treponema denticola 312 1 158 0 species species 0 313 Treponema pedis 409322 1 species 0 81028 1 120 Treponema brennaborense 1 3 0 genus 399320 4 413 Sphaerochaeta species 0 1 1131703 Sphaerochaeta globosa 135 273376 1 114 Sphaerochaeta coccoides species 0 0 species 1 1131707 Sphaerochaeta pleomorpha 161 0 genus 2 146 415 species 0 1 154 Spirochaeta thermophila 235 46355 1 180 Spirochaeta africana 0 species 0 genus 1 1616789 935 species 0 1307761 1 935 Salinispira pacifica Borreliaceae 9323 17 1643685 family 0 29 1 138 8 5398 Borrelia 1 74 0 genus 1 143 Borrelia anserina 440 0 species 0 species 140 1 472 Borrelia hermsii species 0 142 1 499 Borrelia turicatae 0 species Borrelia duttonii 1667 1 40834 Borrelia parkeri 474 1 141 0 species 1109 Borrelia miyamotoi 47466 1 0 species Borrelia recurrentis 663 1 44449 species 0 3896 Borreliella 64895 8 genus 0 1 178 0 species Borreliella afzelii 440 1 29518 Borreliella garinii 915 1 29519 species 0 0 species 1674146 1 463 Borrelia mayonii 0 species Borreliella bavariensis 396 1 664662 139 1 590 Borreliella burgdorferi 0 species Borreliella bissettii 489 1 64897 species 0 species 0 425 Borreliella valaisiana 62088 1 order 0 1 10 5229 Brachyspirales 1643686 7 Brachyspiraceae 5219 6 143786 0 family 4 1 5 29521 Brachyspira 5215 22 1 0 genus Brachyspira pilosicoli 1626 1 52584 species 0 1 159 Brachyspira hyodysenteriae 1258 species 0 1 84377 Brachyspira intermedia 1166 0 species species 0 1 84378 Brachyspira murdochii 1143 1224 2025 1330024 Proteobacteria 1 272 phylum 0 6 1807140 1127 class 0 1127 Acidithiobacillales 225057 6 0 order 1 28 225058 5 1099 Acidithiobacillaceae 1 17 family 0 1 12 genus 0 119977 4 1082 Acidithiobacillus 0 species 405 Acidithiobacillus ferrivorans 160808 1 species 0 1 33059 Acidithiobacillus caldus 388 920 1 277 Acidithiobacillus ferrooxidans species 0 307 1 0 class 566 28211 Alphaproteobacteria 395714 order 0 1 40 31333 Rickettsiales 766 56 1328881 3 978 Candidatus Midichloriaceae 1 5 family 0 2 411566 Candidatus Midichloria 973 16 1 genus 0 234827 1 957 Candidatus Midichloria mitochondrii species 0 1 11 0 family 775 28 12857 Rickettsiaceae 1 1 genus 0 2 2115980 Candidatus Phycorickettsia 919 0 species 1 2115978 Candidatus Phycorickettsia trachydisci 918 tribe 0 11927 33988 25 9949 Rickettsia 780 23 0 genus 1 852 2087 2 1129742 species group 0 788 1 799 Rickettsia canadensis 0 species 0 species 1 33990 Rickettsia bellii 1288 species group 0 3646 114277 17 79 Rickettsia africae 35788 1 species 0 species 0 1 47589 Rickettsia peacockii 330 species 0 786 1 495 Rickettsia akari 0 species 139 Rickettsia rickettsii 783 1 0 species Rickettsia philipii 89 1 1105106 0 species 63 Rickettsia parkeri 35792 1 species 0 Rickettsia australis 686 1 787 1 781 Rickettsia conorii 67 0 species 33989 1 189 Rickettsia amblyommatis 0 species 33991 1 111 Rickettsia montanensis 0 species 1 33992 Rickettsia rhipicephali 203 0 species 35790 1 89 Rickettsia japonica 0 species 0 species Rickettsia massiliae 131 1 35791 Rickettsia felis 509 1 42862 species 0 0 species 1 35794 Rickettsia slovaca 29 species 0 1 226665 Rickettsia heilongjiangensis 80 0 species 357 Rickettsia monacensis 109232 1 2293 114292 2 species group 0 1 785 Rickettsia typhi 1094 0 species 1199 Rickettsia prowazekii 782 1 0 species no rank 0 1 114295 1071 1071 Rickettsia endosymbiont of Bemisia tabaci 337479 1 species 0 genus 0 1 1 Orientia 1978 2 69474 Orientia tsutsugamushi 1977 1 784 species 0 2097 1 1699067 0 no rank 0 species Rickettsiales bacterium Ac37b 2097 1 1528098 22 1 family 0 23 942 Anaplasmataceae 15361 1 41 genus 0 943 6 6772 Ehrlichia 106178 4 5500 0 species group 944 1 1514 Ehrlichia canis 0 species 0 species 945 1 1331 Ehrlichia chaffeensis 1 779 Ehrlichia ruminantium 1515 species 0 1 35795 Ehrlichia muris 1140 0 species 106181 1 1231 0 no rank species 0 1 391036 Ehrlichia sp. HF 1231 942 Neorickettsia 33993 4 genus 0 1 15 33994 1 259 Neorickettsia helminthoeca species 0 species 0 951 1 321 Neorickettsia sennetsu Neorickettsia risticii 347 1 950 0 species 6803 952 8 tribe 0 161 1 0 genus 8 953 Wolbachia 6803 0 no rank 7 2640676 6642 species 0 626 Wolbachia endosymbiont of Cimex lectularius 246273 1 1 77551 Wolbachia endosymbiont of Onchocerca volvulus 746 species 0 0 species Wolbachia endosymbiont of Brugia malayi 1155 1 80849 77038 1 1705 Wolbachia endosymbiont of Drosophila simulans 0 species 0 species 163164 1 845 Wolbachia endosymbiont of Drosophila melanogaster 749 Wolbachia endosymbiont of Onchocerca ochengi 100901 1 0 species 66084 1 816 Wolbachia sp. wRi species 0 Anaplasma 822 4 768 genus 0 5 1 species 0 769 1 194 Anaplasma centrale 384 106179 1 0 species group 948 1 384 Anaplasma phagocytophilum 0 species species 0 Anaplasma marginale 239 1 770 order 0 110 1 Sphingomonadales 23146 82 204457 1 69 0 family 335929 22 4559 Erythrobacteraceae genus 0 1 81 636 Altererythrobacter 361177 4 155 Altererythrobacter epoxidivorans 361183 1 species 0 species 0 1 476157 Altererythrobacter ishigakiensis 223 Altererythrobacter atlanticus 177 1 1267766 species 0 no rank 0 1188 6 2800788 Erythrobacter 670 3 1041 genus 0 83 1 1 1112 Porphyrobacter neustonensis 184 species 0 0 species 1 39960 Erythrobacter litoralis 403 3 1111 Porphyrobacter 518 36 1 genus 0 0 no rank 2 2683265 482 species 0 Porphyrobacter sp. LM 6 241 1 1896196 species 0 1 2023229 Porphyrobacter HT-58-2 241 0 genus 1099 2 2800681 Erythrobacter gangjinensis 497 1 502682 species 0 0 species 1 1648404 Erythrobacter atlanticus 602 1 2800682 300 genus 0 species 0 645517 1 300 Altererythrobacter namhicola Croceicoccus 440 3 1295327 0 genus 16 1 1 1348774 Croceicoccus naphthovorans 175 0 species 249 Croceicoccus marinus 450378 1 0 species genus 0 2800686 2 324 162 Altererythrobacter dongtanensis 692370 1 0 species 0 species 1 1982042 Altererythrobacter mangrovi 162 185 2800685 1 0 genus 0 species Altererythrobacter marensis 185 1 543877 genus 0 1855416 2 318 species 0 139 Erythrobacter seohaensis 266951 1 0 species 179 Erythrobacter flavus 192812 1 family 0 148 1 Sphingomonadaceae 18477 59 41297 1 68 genus 0 165697 10 2971 Sphingopyxis 282 Sphingopyxis terrae 33052 1 species 0 Sphingopyxis granuli 245 1 267128 species 0 Sphingopyxis macrogoltabida 439 1 33050 0 species 0 species 210 Sphingopyxis fribergensis 1515612 1 1 117207 Sphingopyxis alaskensis 215 0 species no rank 0 4 2614943 1512 1 1913578 Sphingopyxis sp. LPB0140 691 species 0 species 0 245 Sphingopyxis sp. MG 1866325 1 Sphingopyxis sp. 113P3 236 1 292913 species 0 Sphingopyxis sp. QXT-31 340 1 1357916 0 species genus 0 1 2685927 293 species 0 293 Sphingomonas sp. JJ-A5 1921510 1 2709685 1 317 0 genus species 0 266812 1 317 Sphingorhabdus flavimaris 15 13687 Sphingomonas 7837 123 1 genus 0 160791 2 831 Sphingomonas wittichii 1 411 0 species strain 0 1 1283312 Sphingomonas sp. DC-6 420 Sphingomonas hengshuiensis 306 1 1609977 species 0 1549858 1 271 Sphingomonas taxi species 0 152682 1 282 Sphingomonas melonis 0 species species 0 1 93064 Sphingomonas koreensis 265 species 0 397260 1 574 Sphingomonas sanxanigenens 4895 196159 6 no rank 0 1938607 1 237 Sphingomonas sp. LM7 species 0 species 0 Sphingomonas sp. LK11 3604 1 1390395 0 species 1 1030157 Sphingomonas sp. KC8 281 745310 1 292 Sphingomonas sp. MM-1 0 species Sphingomonas sp. Cra20 271 1 1327635 species 0 0 species Sphingomonas sp. NIC1 210 1 1961362 0 species 1 1560345 Sphingomonas panacis 290 0 genus 3 1 Zymomonas 890 2 541 542 1 887 Zymomonas mobilis 0 species 698 Sphingorhabdus 1434046 3 0 genus 1 10 688 2614947 2 0 no rank 1 2077182 Sphingorhabdus sp. YGSMI21 362 species 0 0 species Sphingorhabdus sp. M41 326 1 1806885 Sphingobium 3379 15 165695 0 genus 147 1 0 species 1 120107 Sphingobium cloacae 189 6 2611147 1303 0 no rank 627192 1 241 Sphingobium sp. SYK-6 species 0 1843368 1 209 Sphingobium sp. RAC03 species 0 1 407020 Sphingobium sp. MI1205 216 species 0 1 1315974 Sphingobium sp. TKS 215 0 species 1 484429 Sphingobium sp. YBL2 235 species 0 0 species Sphingobium sp. EP60837 187 1 1855519 332055 1 237 Sphingobium indicum 0 species 0 species 1 1332080 Sphingobium baderi 182 Sphingobium herbicidovorans 206 1 76947 species 0 1 332056 Sphingobium japonicum 258 species 0 species 0 Sphingobium yanoikuyae 452 1 13690 Sphingobium chlorophenolicum 207 1 46429 species 0 1673076 1 198 Sphingobium hydrophobicum species 0 0 genus 1 41 1152 Novosphingobium 165696 5 280 1 2644732 no rank 0 280 Novosphingobium sp. PP1Y 702113 1 0 species 0 species 1 158500 Novosphingobium resinovorum 307 0 species 48935 1 201 Novosphingobium aromaticivorans Novosphingobium pentaromativorans 323 1 205844 0 species 301 Blastomonas 150203 2 genus 0 1 3 1 2626550 298 no rank 0 1842535 1 298 Blastomonas sp. RAC04 0 species genus 0 10 1 Citromicrobium 181 2 72173 2630544 1 171 no rank 0 171 Citromicrobium sp. JL477 1634516 1 0 species 1649486 2 310 Rhizorhabdus 1 1 genus 0 309 Rhizorhabdus dicambivorans 1850238 1 0 species 0 order 378 1 Rhizobiales 78272 212 356 0 family 1 77 10780 Bradyrhizobiaceae 41294 26 911 3 545 Nitrobacter 1 4 0 genus Nitrobacter winogradskyi 199 1 913 0 species species 0 1 912 Nitrobacter hamburgensis 342 2 40136 Oligotropha 266 2 1 0 genus 1 40137 Oligotropha carboxidovorans 264 0 species 21 1 0 genus 2 1073 Rhodopseudomonas 2405 1076 1 2384 Rhodopseudomonas palustris species 0 0 genus 145 1 Bradyrhizobium 5630 11 374 Bradyrhizobium diazoefficiens 790 1 1355477 species 0 0 species 1 44255 Bradyrhizobium oligotrophicum 552 720 Bradyrhizobium japonicum 375 1 species 0 Bradyrhizobium icense 421 1 1274631 species 0 no rank 0 3002 2631580 6 0 species 114615 1 644 Bradyrhizobium sp. ORS 278 1 376 Bradyrhizobium sp. 609 0 species species 0 Bradyrhizobium sp. CCGE-LA001 416 1 1223566 species 0 404 Bradyrhizobium sp. ORS 285 115808 1 species 0 288000 1 484 Bradyrhizobium sp. BTAi1 0 species 1 2057741 Bradyrhizobium sp. SK17 445 71 1 0 genus 5 85413 Bosea 1546 species 0 Bosea vaviloviae 411 1 1526658 3 2653178 1064 0 no rank 1 2015316 Bosea sp. AS-1 395 species 0 Bosea sp. PAMC 26642 305 1 1792307 species 0 Bosea sp. RAC05 364 1 1842539 0 species 4 1 0 genus 2 1649510 Variibacter 311 1333996 1 307 Variibacter gotjawalensis species 0 0 family 13 1 Chelatococcaceae 844 4 2036754 32 1 0 genus 3 28209 Chelatococcus 831 1 2638111 427 no rank 0 1 1702325 Chelatococcus sp. CO-6 427 0 species 1 444444 Chelatococcus daeguensis 372 species 0 0 family 5 1 Methylocystaceae 837 6 31993 Methylocystis 525 3 133 genus 0 31 1 1 655015 Methylocystis bryophila 247 0 species 0 no rank 2625913 1 247 0 species 247 Methylocystis sp. SC2 187303 1 1 4 genus 0 425 2 307 Methylosinus 426 1 303 Methylosinus trichosporium 0 species 118882 20 3461 Brucellaceae 1 8 family 0 528 5 2143 Ochrobactrum 1 32 0 genus 1 529 Ochrobactrum anthropi 264 species 0 species 0 Ochrobactrum sp. A44 347 1 271865 1 571256 Ochrobactrum pituitosum 888 0 species 0 species 419475 1 612 Ochrobactrum pseudogrignonense 1310 Brucella 234 14 genus 0 1 341 0 species 1 981386 Brucella vulpis 85 species 0 29461 1 200 Brucella suis 4 2632610 327 no rank 0 0 species Brucella sp. 09RB8471 106 1 1149952 species 0 1 1891098 Brucella sp. 2002734562 30 species 0 112 Brucella sp. 09RB8910 1844051 1 species 0 Brucella sp. 141012304 79 1 1885919 63 Brucella abortus 235 1 species 0 0 species 76 Brucella canis 36855 1 236 1 17 Brucella ovis 0 species 0 species 120576 1 71 Brucella pinnipedialis Brucella ceti 55 1 120577 species 0 species 0 43 Brucella melitensis 29459 1 1 444163 Brucella microti 32 species 0 45404 5 929 Beijerinckiaceae 1 2 family 0 2 532 Beijerinckia 693 9 1 0 genus species 0 Beijerinckia indica 684 1 533 5 1 0 genus 2 120652 Methylocella 234 0 species 199596 1 229 Methylocella silvestris 1433 Aurantimonadaceae 255475 7 0 family 1 6 1 9 genus 0 414371 2 337 Aureimonas 1 2615206 328 0 no rank Aureimonas sp. AU20 328 1 1349819 0 species genus 0 32 1 Martelella 1090 4 293088 385 Martelella mediterranea 293089 1 0 species Martelella endophytica 274 1 1486262 0 species 2629616 1 399 0 no rank species 0 Martelella sp. AD-3 399 1 686597 4572 Hyphomicrobiaceae 45401 19 0 family 1 35 6 1 genus 0 2 29407 Rhodoplanes 451 no rank 0 1 2619116 445 0 species 445 Rhodoplanes sp. Z2-YC6860 674703 1 1 9 0 genus 1068 2 312 Rhodomicrobium 1069 1 303 Rhodomicrobium vannielii species 0 Blastochloris 344 2 59282 0 genus 8 1 0 species 336 Blastochloris viridis 1079 1 4 81 Hyphomicrobium 1490 40 1 genus 0 0 species 243 Hyphomicrobium nitrativorans 1427356 1 no rank 0 831 2619925 1 species 0 Hyphomicrobium sp. MC1 831 1 717785 376 Hyphomicrobium denitrificans 53399 1 species 0 genus 0 40 1 Devosia 1239 4 46913 0 no rank 3 196773 1199 0 species 1643450 1 403 Devosia sp. H5989 species 0 1736675 1 494 Devosia sp. A16 species 0 1 2083786 Devosia sp. I507 302 Filomicrobium 340 2 119044 0 genus 9 1 0 species 331 Candidatus Filomicrobium marinum 1608628 1 Pelagibacterium 361 2 1082930 0 genus 19 1 0 species Pelagibacterium halotolerans 342 1 531813 772 18 18200 Bartonellaceae 1 26 family 0 380 1 0 genus 17 773 Bartonella 18174 0 species Bartonella apis 964 1 1686310 0 species 774 1 1184 Bartonella bacilliformis 1 38323 Bartonella henselae 997 0 species species 0 1318743 1 1112 Bartonella ancashensis Bartonella tribocorum 1091 1 85701 species 0 0 species 1 803 Bartonella quintana 1005 6 2645622 7445 0 no rank 1236 Bartonella sp. JB63 1933907 1 0 species 1933910 1 1178 Bartonella sp. A1379B species 0 1933912 1 1206 Bartonella sp. Raccoon60 0 species species 0 1290 Bartonella sp. 1-1C 515256 1 species 0 1 1933904 Bartonella sp. WD16.2 1300 species 0 1 1933906 Bartonella sp. JB15 1235 1140 Bartonella grahamii 33045 1 0 species species 0 1 388640 Bartonella australis 600 0 species 1 56426 Bartonella clarridgeiae 1200 0 species Bartonella vinsonii 1056 1 33047 119043 3 482 Rhodobiaceae 1 3 family 0 genus 0 21 1 Parvibaculum 479 2 256616 0 species 256618 1 458 Parvibaculum lavamentivorans 0 family 1 90 21108 Rhizobiaceae 82115 55 genus 0 1 45 4955 Liberibacter 34019 6 species 0 1 309868 Candidatus Liberibacter americanus 1085 species 0 1273132 1 1303 Liberibacter crescens 1 34021 Candidatus Liberibacter asiaticus 786 0 species 556287 1 872 Candidatus Liberibacter solanacearum species 0 0 species Candidatus Liberibacter africanus 864 1 34020 227290 36 11451 0 no rank 0 genus 38 1 Agrobacterium 3290 7 357 679 2632611 2 no rank 0 Agrobacterium sp. H13-3 236 1 861208 species 0 species 0 Agrobacterium sp. RAC06 443 1 1842536 216 Agrobacterium rhizogenes 359 1 0 species Agrobacterium vitis 305 1 373 0 species species group 0 2052 1183400 2 1 1176649 Agrobacterium fabrum 219 0 species Agrobacterium tumefaciens 1833 1 358 species 0 7751 Rhizobium 379 27 genus 0 1 383 species 0 Rhizobium tropici 242 1 398 885 Rhizobium phaseoli 396 1 species 0 497 Rhizobium gallicum 56730 1 species 0 932 Rhizobium etli 29449 1 species 0 0 no rank 2613769 21 2928 species 0 1 2020311 Rhizobium sp. Kim5 242 species 0 220 Rhizobium sp. IRBG74 424182 1 1 2048897 Rhizobium sp. NXC24 277 species 0 0 species Rhizobium sp. N113 6 1 1703960 species 0 202 Rhizobium sp. NT-26 1125847 1 species 0 211 Rhizobium sp. CIAT894 2020312 1 species 0 181 Rhizobium sp. Y9 1914541 1 Rhizobium sp. S41 202 1 1869170 species 0 0 species 1 Rhizobium sp. N6212 1703965 1 1 Rhizobium sp. N621 1703964 1 0 species 0 species 1 1981173 Rhizobium sp. NXC14 179 Rhizobium sp. ACO-34A 259 1 1571470 0 species species 0 8 Rhizobium sp. N871 1703968 1 species 0 Rhizobium sp. N1341 8 1 1703962 1301032 1 235 Rhizobium sp. IE4771 species 0 species 0 49 Rhizobium sp. N731 1703966 1 257 Rhizobium sp. N324 1703969 1 0 species 64 Rhizobium sp. TAL182 2020313 1 species 0 1703961 1 49 Rhizobium sp. N1314 0 species 0 species 1703967 1 7 Rhizobium sp. N741 0 species 270 Rhizobium sp. 10195 2028343 1 1 384 Rhizobium leguminosarum 1884 species 0 1 2 genus 0 1525371 2 410 Neorhizobium 0 species Neorhizobium galegae 408 1 399 2 323620 Shinella 476 4 1 0 genus 0 no rank 472 1 2643062 Shinella sp. HZN7 472 1 879274 species 0 227292 10 4136 no rank 0 0 genus 1 10 629 Ensifer 106591 3 716925 1 284 Ensifer sojae 0 species 335 Ensifer adhaerens 106592 1 species 0 genus 0 1 44 3507 Sinorhizobium 28105 7 species group 0 1 663276 1010 0 species 1 380 Sinorhizobium fredii 1010 323 Sinorhizobium medicae 110321 1 species 0 Sinorhizobium meliloti 1034 1 382 species 0 0 no rank 733 2613772 2 species 0 Sinorhizobium sp. CCBAU 05631 375 1 794846 species 0 358 Sinorhizobium sp. RAC02 1842534 1 1 194963 Sinorhizobium americanum 363 0 species 335928 7 1294 Xanthobacteraceae 1 28 family 0 0 genus 9 1 Azorhizobium 328 2 6 1 7 Azorhizobium caulinodans 319 species 0 521 Xanthobacter 279 2 genus 0 1 9 0 species Xanthobacter autotrophicus 512 1 280 1 9 0 genus 152053 2 417 Starkeya Starkeya novella 408 1 921 0 species 20 69277 Phyllobacteriaceae 6349 22 1 family 0 genus 0 99 1 Mesorhizobium 4325 9 68287 2066070 1 463 Mesorhizobium japonicum species 0 1 39645 Mesorhizobium ciceri 730 0 species 0 species 542 Mesorhizobium sp. B7 1670800 1 0 species 1 381 Mesorhizobium loti 499 species 0 411 Mesorhizobium australicum 536018 1 species 0 Mesorhizobium opportunistum 467 1 593909 0 species 450 Mesorhizobium amorphae 71433 1 no rank 0 664 325217 1 0 species 1 278153 Mesorhizobium sp. WSM1497 664 genus 0 1 8 408 Nitratireductor 245876 2 0 species 472175 1 400 Nitratireductor basaltis 393 Phyllobacterium 28100 2 genus 0 1 8 species 0 385 Phyllobacterium zundukense 1867719 1 1 17 0 genus 274591 2 525 Hoeflea 0 no rank 1 2614931 508 508 Hoeflea sp. IMCC20628 1620421 1 species 0 Chelativorans 270 2 449972 0 genus 17 1 253 1 2643807 0 no rank species 0 266779 1 253 Chelativorans sp. BNC1 406 Aminobacter 31988 2 0 genus 1 2 83263 1 404 Aminobacter aminovorans 0 species 1297 119042 6 no rank 0 genus 0 1 7 327 Pseudorhodoplanes 1734920 2 320 Pseudorhodoplanes sinuspersici 1235591 1 species 0 1484898 2 311 Methyloceanibacter 1 24 0 genus Methyloceanibacter caenitepidi 287 1 1384459 species 0 1 4 genus 0 1572860 2 659 Hartmannibacter 1482074 1 655 Hartmannibacter diazotrophicus species 0 119045 15 6308 Methylobacteriaceae 1 26 family 0 407 9 3076 Methylobacterium 1 106 0 genus species 0 334852 1 288 Methylobacterium oryzae species 0 Methylobacterium radiotolerans 347 1 31998 0 species 1 270351 Methylobacterium aquaticum 448 0 species 535 Methylobacterium nodulans 114616 1 1064 2615210 3 no rank 0 1 1479019 Methylobacterium sp. C1 293 species 0 0 species 307 Methylobacterium sp. AMS5 925818 1 Methylobacterium sp. 4-46 464 1 426117 0 species species 0 418223 1 288 Methylobacterium phyllosphaerae genus 0 2282523 3 2828 408 1 1977 Methylobacterium extorquens species 0 223967 1 551 Methylobacterium populi 0 species 300 Methylobacterium zatmanii 29429 1 0 species genus 0 1 13 378 Microvirga 186650 2 1882682 1 365 Microvirga ossetica 0 species 405 2 2800059 order 0 405 2 2800061 family 0 0 genus 2 1 Maricaulis 405 2 74317 Maricaulis maris 403 1 74318 species 0 0 order 1 91 34044 Rhodobacterales 204455 91 33953 Rhodobacteraceae 31989 90 0 family 1 484 18 1 genus 0 4 53945 Octadecabacter 1754 1217908 1 730 Octadecabacter antarcticus 0 species 405 Octadecabacter temperatus 1458307 1 0 species species 0 53946 1 601 Octadecabacter arcticus genus 0 1 5 377 Pannonibacter 227873 2 1 121719 Pannonibacter phragmitetus 372 0 species 470 1 1649279 genus 0 1 379347 Ruegeria mobilis 470 0 species no rank 0 58840 2 784 348 Rhodobacteraceae bacterium QY30 2033435 1 0 species species 0 436 Rhodobacteraceae bacterium 1904441 1 875170 5 2450 Celeribacter 1 12 0 genus 383 Celeribacter ethanolicus 1758178 1 species 0 Celeribacter manganoxidans 1001 1 1411902 species 0 393 Celeribacter marinus 1397108 1 species 0 0 species 1 1208324 Celeribacter indicus 661 genus 0 1 45 3193 Paracoccus 265 9 462 1 246570 0 no rank 1529068 1 462 Paracoccus sp. BM15 species 0 1 34004 Paracoccus aminovorans 335 0 species species 0 274 Paracoccus contaminans 1945662 1 390 Paracoccus denitrificans 266 1 0 species Paracoccus yeei 508 1 147645 0 species species 0 1 1077935 Paracoccus zhejiangensis 402 34003 1 332 Paracoccus aminophilus 0 species species 0 2065379 1 445 Paracoccus sp. CBA4604 genus 0 1 29 2027 Rhodobacter 1060 5 0 no rank 707 2 196779 1850250 1 350 Rhodobacter sp. LPB0142 0 species Rhodobacter sp. CZR27 357 1 2033869 species 0 species 0 1061 1 385 Rhodobacter capsulatus species 0 1063 1 906 Rhodobacter sphaeroides 538 Halocynthiibacter 1579315 2 genus 0 1 1 1579316 1 537 Halocynthiibacter arcticus species 0 Dinoroseobacter 463 2 309512 0 genus 8 1 species 0 455 Dinoroseobacter shibae 215813 1 Ruegeria 1138 3 97050 genus 0 10 1 0 species 691 Ruegeria pomeroyi 89184 1 0 no rank 437 1 2625375 1 292414 Ruegeria sp. TM1040 437 0 species genus 0 5 1 Roseovarius 532 2 74030 species 0 1 215743 Roseovarius mucosus 527 1 2 genus 0 191028 2 1147 Leisingera species 0 1 133924 Leisingera methylohalidivorans 1145 62 1 genus 0 5 302485 Phaeobacter 4511 species 0 941 Phaeobacter piscinae 1580596 1 0 species Phaeobacter porticola 409 1 1844006 221822 1 1962 Phaeobacter inhibens 0 species Phaeobacter gallaeciensis 1137 1 60890 0 species 2 1097466 Defluviimonas 551 1 1 0 genus species 0 550 Defluviimonas alba 1335048 1 genus 0 1 1 514 Roseibacterium 159345 2 159346 1 513 Roseibacterium elongatum species 0 351 1759396 1 genus 0 351 1 2622455 no rank 0 Marivivens sp. JLT3646 351 1 1920883 species 0 2 119541 Rhodobaca 568 7 1 genus 0 species 0 1 441209 Rhodobaca barguzinensis 561 1609958 2 601 Confluentimicrobium 1 3 0 genus 2643318 1 598 0 no rank species 0 1 1609966 Confluentimicrobium sp. EMB200-NS6 598 0 genus 1001 263377 2 0 no rank 2640570 1 515 1 1792508 Yangia sp. CCB-MM3 515 species 0 Thiobacimonas profunda 486 1 1229727 0 species 572 2211641 1 genus 0 species 0 572 Loktanella vestfoldensis 245188 1 34008 4 1569 Rhodovulum 1 20 0 genus Rhodovulum sulfidophilum 712 1 35806 0 species 2631432 2 837 0 no rank species 0 1 1564506 Rhodovulum sp. P5 350 308754 1 487 Rhodovulum sp. MB263 species 0 genus 0 1 3 539 Pelagibaca 360528 2 species 0 536 Pelagibaca abyssi 1250539 1 367771 2 614 Marinovum 1 3 genus 0 1 42444 Marinovum algicola 611 species 0 genus 0 4 Thalassococcus 436357 1 92944 3 629 Ketogulonicigenium 1 9 0 genus 0 species 1 92945 Ketogulonicigenium vulgare 325 species 0 92947 1 295 Ketogulonicigenium robustum 1 12 0 genus 188905 2 405 Jannaschia 393 2645469 1 0 no rank species 0 1 290400 Jannaschia sp. CCS1 393 Loktanella 5 1 245186 0 genus 1 1 0 genus 299261 2 456 Tateyamaria 455 Tateyamaria omphalii 299262 1 0 species 478070 4 1305 Labrenzia 1 53 0 genus no rank 0 804 2648686 2 395 Labrenzia sp. VG12 2021862 1 species 0 species 0 Labrenzia sp. CP4 409 1 1674922 448 Labrenzia aggregata 187304 1 species 0 10 1 0 genus 2 74032 Antarctobacter 581 571 Antarctobacter heliothermus 74033 1 species 0 788 1284657 1 0 genus 1 1284658 Planktomarina temperata 788 species 0 20 1 genus 0 3 2433 Roseobacter 1116 species 0 560 Roseobacter litoralis 42443 1 0 species 2434 1 536 Roseobacter denitrificans 12 1 genus 0 3 60136 Sulfitobacter 1034 species 0 Sulfitobacter pseudonitzschiae 498 1 1402135 524 196795 1 no rank 0 1 1917485 Sulfitobacter sp. AM1-D1 524 0 species 1 285107 350 genus 0 1915078 1 350 Thioclava nitratireducens 0 species 1 5 genus 0 58842 2 532 Sagittula 527 1 2624628 0 no rank 527 Sagittula sp. P11 2009329 1 0 species 2 1 order 0 3 1191478 Magnetococcales 362 0 family 1 1 360 Magnetococcaceae 1191479 2 0 genus 1 162171 359 1124597 1 359 Magnetococcus marinus species 0 1 8 order 0 1921002 8 2695 Holosporales 1 44746 866 family 0 866 204454 1 no rank 0 0 species endosymbiont of Acanthamoeba sp. UWC8 866 1 86106 1069 Caedimonadaceae 2100208 3 0 family 1 4 7 1 0 genus 2 1509243 Candidatus Nucleicultrix 1065 0 species 1058 Candidatus Nucleicultrix amoebiphila 1509244 1 1 15 0 family 1777752 3 752 Candidatus Paracaedibacteraceae 0 genus 8 1 Candidatus Paracaedibacter 737 2 1521255 species 0 729 Candidatus Paracaedibacter acanthamoebae 91604 1 1 9 order 0 255473 4 758 Parvularculales 12 1 0 family 3 255474 Parvularculaceae 749 Parvularcula 737 2 208215 0 genus 16 1 species 0 721 Parvularcula bermudensis 208216 1 order 0 133 1 Rhodospirillales 22835 64 204441 52 1 family 0 33 433 Acetobacteraceae 8031 0 genus 1 1602345 207 0 species 1510841 1 207 Parasaccharibacter apium Acetobacter 3198 8 434 genus 0 34 1 1 104102 Acetobacter tropicalis 362 species 0 247 Acetobacter senegalensis 446692 1 0 species Acetobacter oryzifermentans 289 1 1633874 0 species Acetobacter pomorum 248 1 65959 0 species 1 438 Acetobacter pasteurianus 1467 species 0 1 151157 228 subgenus 0 1 435 Acetobacter aceti 228 0 species 1 1076596 Acetobacter persici 323 0 species genus 0 1 5 556 Gluconobacter 441 3 1 442 Gluconobacter oxydans 369 species 0 0 species 1 318683 Gluconobacter albidus 182 genus 0 2 1 Gluconacetobacter 286 2 89583 33996 1 284 Gluconacetobacter diazotrophicus species 0 genus 0 13 1 Acidiphilium 590 3 522 species 0 288 Acidiphilium cryptum 524 1 0 species 62140 1 289 Acidiphilium multivorum 364409 2 654 Granulibacter 1 5 0 genus Granulibacter bethesdensis 649 1 364410 species 0 153497 1 208 genus 0 species 0 208 Kozakia baliensis 153496 1 1 1 0 genus 2 91914 Asaia 169 0 species 1 91915 Asaia bogorensis 168 0 genus 30 1 Komagataeibacter 1077 5 1434011 1 28448 Komagataeibacter xylinus 328 species 0 225 Komagataeibacter medellinensis 1177712 1 species 0 0 species 265960 1 360 Komagataeibacter nataicola 1 33995 Komagataeibacter europaeus 134 species 0 genus 0 8 1 Roseomonas 876 3 125216 445 1 2617492 0 no rank 445 Roseomonas sp. FDAARGOS_362 2018065 1 species 0 257708 1 423 Roseomonas gilardii 0 species 1 5 genus 0 320496 2 158 Neoasaia 153 Neoasaia chiangmaiensis 320497 1 species 0 0 family 131 1 Rhodospirillaceae 14671 30 41295 1 2 genus 0 1612157 2 369 Pararhodospirillum species 0 1 1084 Pararhodospirillum photometricum 367 90 1 genus 0 5 13134 Magnetospirillum 2507 species 0 Magnetospirillum gryphiswaldense 644 1 55518 0 no rank 2 2617991 1153 species 0 Magnetospirillum sp. ME-1 595 1 1639348 1 1663591 Magnetospirillum sp. XM-1 558 species 0 Magnetospirillum magneticum 620 1 84159 species 0 genus 0 4042 1263978 1 4042 Candidatus Endolissoclinum faulkneri 1263979 1 0 species 1081 3 1038 Rhodospirillum 1 13 genus 0 572 Rhodospirillum centenum 34018 1 species 0 453 Rhodospirillum rubrum 1085 1 species 0 1 14 genus 0 171436 2 608 Tistrella species 0 171437 1 594 Tistrella mobilis Azospirillum 2824 5 191 genus 0 49 1 192 1 925 Azospirillum brasilense species 0 528244 1 598 Azospirillum thiophilum species 0 species 0 282 Azospirillum humicireducens 1226968 1 Azospirillum lipoferum 970 1 193 0 species 2 1182780 Magnetospira 479 7 1 genus 0 1 2685734 472 no rank 0 0 species 1288970 1 472 Magnetospira sp. QH-2 0 genus 3 1 Niveispirillum 432 2 1543704 429 Niveispirillum cyanobacteriorum 1612173 1 0 species 1543705 2 566 Nitrospirillum 1 4 genus 0 562 Nitrospirillum amazonense 28077 1 0 species genus 0 1 27 1345 Thalassospira 168934 3 1 2048283 Thalassospira sp. CSC3H3 633 0 species 0 species 1 220697 Thalassospira xiamenensis 685 2 1804663 Haematospirillum 330 3 1 genus 0 0 species 1549855 1 327 Haematospirillum jordaniae 54526 9 191184 Pelagibacterales 1 22 order 0 12632 Candidatus Fonsibacter 2045213 2 0 genus 1 21 Candidatus Fonsibacter ubiquis 12611 1 1925548 0 species 178530 Pelagibacteraceae 1655514 6 0 family 1 84 96266 1655516 2 no rank 0 0 species 1 859653 alpha proteobacterium HIMB5 84837 alpha proteobacterium HIMB59 11429 1 744985 species 0 0 genus 1 29 82180 Candidatus Pelagibacter 198251 3 2647897 1 12390 no rank 0 1 1002672 Candidatus Pelagibacter sp. IMCC9063 12390 0 species 198252 1 69761 Candidatus Pelagibacter ubique species 0 no rank 0 4068 82117 8 0 genus 1 3 384 Phreatobacter 1632780 2 species 0 1 1868589 Phreatobacter sp. S-12 381 62654 2 2844 0 clade Candidatus Puniceispirillum 2844 2 767891 0 genus 23 1 1 767892 Candidatus Puniceispirillum marinum 2821 species 0 15 1 0 genus 2 991903 Polymorphum 446 Polymorphum gilvum 431 1 991904 0 species 2 213485 Micavibrio 394 2 1 0 genus 0 species 392 Micavibrio aeruginosavorus 349221 1 6 2800060 1850 0 order 1 37 family 0 69657 6 1850 Hyphomonadaceae 0 genus 1 17 1093 Hirschia 2723 2 Hirschia baltica 1076 1 2724 0 species 3 85 Hyphomonas 720 34 1 genus 0 1 2630699 414 no rank 0 0 species 1 1906738 Hyphomonas sp. Mor2 414 species 0 272 Hyphomonas neptunium 81032 1 4455 Caulobacterales 204458 20 0 order 1 21 4434 Caulobacteraceae 76892 19 family 0 1 58 genus 0 1 5 325 Phenylobacterium 20 2 species 0 1 284016 Phenylobacterium zucineum 320 230 81440 1 no rank 0 species 0 1759059 1 230 Caulobacteraceae bacterium OTSz_A_272 75 6 2076 Caulobacter 1 44 genus 0 69395 1 316 Caulobacter henricii 0 species 351 Caulobacter mirabilis 69666 1 0 species 0 no rank 1 2648921 355 species 0 355 Caulobacter sp. K31 366602 1 species 0 155892 1 735 Caulobacter vibrioides 88688 1 275 Caulobacter segnis 0 species 2 76890 Asticcacaulis 280 8 1 0 genus species 0 1 78587 Asticcacaulis excentricus 272 1465 Brevundimonas 41275 7 0 genus 1 65 212 Brevundimonas naejangsanensis 588932 1 0 species 0 no rank 775 2622653 3 0 species 1 1938605 Brevundimonas sp. LM2 404 176 Brevundimonas sp. GW460-12-10-14-LB2 1827469 1 species 0 195 Brevundimonas sp. DS20 1532555 1 species 0 Brevundimonas subvibrioides 248 1 74313 species 0 Brevundimonas vesicularis 165 1 41276 species 0 895 1236 Gammaproteobacteria 696553 890 1 class 0 0 no rank 8424 13 118884 2703 Candidatus Thioglobus 655184 3 genus 0 1 42 1427364 1 1794 Candidatus Thioglobus singularis species 0 Candidatus Thioglobus autotrophicus 867 1 1705394 species 0 2 349742 Sedimenticola 453 6 1 genus 0 species 0 Sedimenticola thiotaurini 447 1 1543721 1484 198346 1 clade 0 species 0 186490 1 1484 Candidatus Baumannia cicadellinicola 401 Thiolapillus 1608298 2 genus 0 1 10 1 1076588 Thiolapillus brandeum 391 species 0 0 clade 2900 4 32036 1 1 genus 0 2 1541743 Candidatus Ruthia 941 1 386487 Candidatus Ruthia magnifica 940 0 species 1 410330 Calyptogena okutanii thioautotrophic gill symbiont 1233 species 0 726 Bathymodiolus septemdierum thioautotrophic gill symbiont 113267 1 species 0 1 1524249 483 genus 0 1249552 1 483 Pseudohongiella spirulinae 0 species 0 order 1 59 9194 Aeromonadales 135624 29 0 family 1 55 9135 Aeromonadaceae 84642 28 genus 0 1 217 7277 Aeromonas 642 18 264 Aeromonas aquatica 558964 1 0 species 0 species 648 1 133 Aeromonas caviae 651 1 279 Aeromonas media species 0 Aeromonas dhakensis 208 1 196024 0 species 257493 8 2084 0 no rank 0 species Aeromonas sp. CU5 264 1 2033033 0 species 1 1758179 Aeromonas sp. ASNIH5 230 1636607 1 168 Aeromonas sp. ASNIH2 0 species 0 species Aeromonas sp. ASNIH7 139 1 1920107 species 0 1 1636606 Aeromonas sp. ASNIH1 393 1 1636608 Aeromonas sp. ASNIH3 145 species 0 1636609 1 413 Aeromonas sp. ASNIH4 0 species species 0 2033032 1 332 Aeromonas sp. CA23 0 species 1 654 Aeromonas veronii 703 species 0 1287 Aeromonas salmonicida 645 1 species 0 1 644 Aeromonas hydrophila 1673 0 species 948519 1 222 Aeromonas rivipollensis 1 652 Aeromonas schubertii 207 0 species 1 2 genus 0 43947 2 272 Tolumonas 0 species 1 43948 Tolumonas auensis 270 2 347533 Zobellella 367 2 1 0 genus species 0 Zobellella denitrificans 365 1 347534 Oceanisphaera 830 3 225143 genus 0 15 1 species 0 1 1416627 Oceanisphaera profunda 418 0 species 1 1903694 Oceanisphaera sp. AMac2203 397 334 Oceanimonas 129577 2 genus 0 1 3 no rank 0 331 2636315 1 species 0 Oceanimonas sp. GK1 331 1 511062 order 0 28 1 Thiotrichales 36721 35 72273 0 family 54 1 Piscirickettsiaceae 6713 14 135616 6 1 genus 0 3 933 Thiomicrospira 707 species 0 1 147268 Thiomicrospira cyclica 306 0 species 92245 1 395 Thiomicrospira aerophila 4 34067 Cycloclasticus 3038 63 1 0 genus 1329899 1 1162 Cycloclasticus zancles 0 species 1813 2 2621467 0 no rank 919 Cycloclasticus sp. PY97N 728003 1 species 0 species 0 894 Cycloclasticus sp. P1 385025 1 1 20 0 genus 40222 3 982 Methylophaga 754476 1 516 Methylophaga nitratireducenticrescens 0 species species 0 446 Methylophaga frappieri 754477 1 genus 0 467 1 28884 0 species 1 39765 Hydrogenovibrio crunogenus 467 1465 Piscirickettsia 1237 2 0 genus 1 1 1 1238 Piscirickettsia salmonis 1464 0 species Thiotrichaceae 2616 5 135617 family 0 15 1 1463 Thioploca 40751 2 genus 0 1 2 Thioploca ingrica 1461 1 40754 0 species 1021 2 1138 Beggiatoa 1 9 genus 0 species 0 1 288004 Beggiatoa leptomitoformis 1129 27 1 0 family 15 34064 Francisellaceae 27364 0 genus 248 1 Francisella 26190 12 262 Francisella sp. TX077310 1355 1 573570 species 0 Francisella noatunensis 1696 1 657445 species 0 974 Francisella hispaniensis 622488 1 species 0 0 species 954 1 985 Francisella persica 0 species 1 263 Francisella tularensis 3640 573569 1 1021 Francisella sp. TX077308 0 species 0 no rank 2241 2 2610885 species 0 1 1547445 Francisella sp. FSC1006 1239 species 0 Francisella sp. MA067296 1002 1 475375 species 0 9862 Francisella halioticida 549298 1 28110 1 2700 Francisella philomiragia species 0 1468 Francisella sp. CA97-1460 1542390 1 0 species 1 4 0 genus 1869285 2 1147 Allofrancisella Allofrancisella guangzhouensis 1143 1 594679 species 0 355 3 135615 0 order 0 family 1 13 355 Cardiobacteriaceae 868 3 3 1 0 genus 2 869 Dichelobacter 342 339 Dichelobacter nodosus 870 1 0 species 0 order 1 9 15777 Legionellales 118969 21 15 444 Legionellaceae 13638 29 1 0 family 445 12 12954 Legionella 1 56 0 genus species 0 1 28087 Legionella sainthelensi 1084 1 446 Legionella pneumophila 4211 species 0 species 0 454 Legionella spiritensis 452 1 Legionella fallonii 1074 1 96230 species 0 1 1867846 Legionella clemsonensis 783 0 species 0 species Legionella lansingensis 606 1 45067 species 0 Legionella endosymbiont of Polyplax serrata 1107 1 2005262 0 species 1 66969 Legionella waltersii 903 species 0 Legionella oakridgensis 726 1 29423 species 0 1 449 Legionella hackeliae 853 0 species 1 450 Legionella longbeachae 1097 465 2 655 Tatlockia 1 4 0 genus Tatlockia micdadei 651 1 451 0 species 5 118968 Coxiellaceae 2130 17 1 family 0 714 1 134284 0 no rank 714 Coxiella-like endosymbiont 1592897 1 0 species 1399 Coxiella 776 3 genus 0 1 10 1 777 Coxiella burnetii 796 0 species no rank 0 1 2676648 593 593 Coxiella endosymbiont of Amblyomma americanum 325775 1 species 0 4 1934945 Immundisolibacterales 439 3 1 0 order 2 1 family 0 3 1934946 Immundisolibacteraceae 436 1 3 genus 0 1934947 2 434 Immundisolibacter 0 species 1 1810504 Immundisolibacter cernigliae 431 184603 Vibrionales 135623 43 order 0 1 35 Vibrionaceae 184568 42 641 0 family 157 1 511678 4 4225 Aliivibrio 1 23 genus 0 1 40269 Aliivibrio salmonicida 909 0 species 668 1 1136 Aliivibrio fischeri 0 species 0 species 2157 Aliivibrio wodanis 80852 1 Vibrio 160373 30 662 genus 0 937 1 species 0 Vibrio vulnificus 3761 1 672 species 0 666 1 1306 Vibrio cholerae 0 species Vibrio tapetis 1559 1 52443 species 0 1 676 Vibrio fluvialis 578 0 species 687 1 766 Vibrio gazogenes species 0 Vibrio furnissii 762 1 29494 species 0 Vibrio scophthalmi 2061 1 45658 1 190893 Vibrio coralliilyticus 1644 0 species 0 species 1 674 Vibrio mimicus 835 Vibrio anguillarum 1826 1 55601 species 0 1534743 1 2981 Vibrio hyugaensis 0 species 0 species 1 28173 Vibrio nigripulchritudo 513 637 Vibrio tritonius 1435069 1 0 species no rank 0 2614977 2 903 species 0 1116375 1 577 Vibrio sp. EJY3 1 2014742 Vibrio sp. 2521-89 326 species 0 1891919 1 1188 species group 0 1188 Vibrio tubiashii 29498 1 species 0 Vibrio breoganii 728 1 553239 species 0 species 0 19243 Vibrio tasmaniensis 212663 1 522 Vibrio qinghaiensis 2025808 1 species 0 0 species group 117623 10 717610 Vibrio parahaemolyticus 3885 1 670 species 0 1 696485 Vibrio owensii 11214 species 0 species 0 1 663 Vibrio alginolyticus 19021 691 1 1468 Vibrio natriegens 0 species 46776 Vibrio rotiferianus 190895 1 species 0 0 species subgroup 2121 2 2315253 150340 1 605 Vibrio antiquarius 0 species 0 species 50719 1 1516 Vibrio diabolicus species 0 669 1 14701 Vibrio harveyi 1 766224 Vibrio jasicida 4262 0 species species 0 1 680 Vibrio campbellii 14175 1 12 0 genus 657 4 17278 Photobacterium 391 Photobacterium gaetbulicola 1295392 1 0 species Photobacterium damselae 15887 1 38293 0 species species 0 Photobacterium profundum 988 1 74109 Paraphotobacterium 2194 2 2042066 0 genus 5 1 2189 Paraphotobacterium marinum 1755811 1 species 0 341 246861 1 genus 0 0 species 1 673 Grimontia hollisae 341 30 135625 Pasteurellales 14972 15 1 0 order 712 29 14957 Pasteurellaceae 1 53 family 0 Pasteurella 2440 3 745 0 genus 14 1 0 species 747 1 1829 Pasteurella multocida species 0 597 Pasteurella dagmatis 754 1 15 1 0 genus 5 713 Actinobacillus 1269 0 species 67854 1 197 Actinobacillus succinogenes species 0 716 1 352 Actinobacillus suis 1 718 Actinobacillus equuli 299 species 0 0 species 406 Actinobacillus pleuropneumoniae 715 1 444 155493 1 0 genus Gallibacterium anatis 444 1 750 species 0 523 476528 1 0 genus 47735 1 523 Bibersteinia trehalosi 0 species Basfia 247 2 697331 genus 0 9 1 [Mannheimia] succiniciproducens 238 1 157673 species 0 6096 Haemophilus 724 6 0 genus 1 29 Haemophilus pittmaniae 314 1 249188 species 0 0 no rank 408 1 2609962 0 species 712310 1 408 Haemophilus sp. oral taxon 036 Haemophilus parainfluenzae 397 1 729 species 0 species 0 727 1 3275 Haemophilus influenzae 0 species 1 730 [Haemophilus] ducreyi 1673 416916 3 893 Aggregatibacter 1 7 genus 0 0 species 714 1 474 Aggregatibacter actinomycetemcomitans species 0 1 732 Aggregatibacter aphrophilus 412 Mannheimia 1316 4 75984 0 genus 7 1 1 85404 Mannheimia varigena 495 0 species no rank 0 1 2645054 425 Mannheimia sp. USDA-ARS-USMARC-1261 425 1 1432056 species 0 species 0 389 Mannheimia haemolytica 75985 1 1 2094023 793 genus 0 0 species Glaesserella parasuis 793 1 738 0 genus 1 3 883 Histophilus 214906 2 1 731 Histophilus somni 880 0 species 38373 Oceanospirillales 135619 71 order 0 1 76 54 1 0 family 3 191033 Oleiphilaceae 773 0 genus 1 4 719 Oleiphilus 141450 2 0 species Oleiphilus messinensis 715 1 141451 1 12 0 family 1920240 6 4429 Kangiellaceae 55 1 0 genus 5 261963 Kangiella 4417 1 1561924 Kangiella profundi 516 species 0 553 Kangiella koreensis 261964 1 species 0 1 914150 Kangiella geojedonensis 2704 species 0 species 0 589 Kangiella sediminilitoris 1144748 1 0 family 1 5 1368 Saccharospirillaceae 255527 4 genus 0 1 230494 799 species 0 1 1336806 Reinekea forsetii 799 0 genus 3 1 Gynuella 564 2 1445504 561 Gynuella sunshinyii 1445505 1 species 0 family 0 4 1 Hahellaceae 423 3 224379 6 1 0 genus 2 158481 Hahella 419 species 0 158327 1 413 Hahella chejuensis 9 224372 Alcanivoracaceae 15799 27 1 0 family 8 1 genus 0 2 2025617 Ketobacter 605 species 0 1 1917421 Ketobacter alkanivorans 597 0 genus 1 62 15167 Alcanivorax 59753 6 Alcanivorax xenomutans 1020 1 1094342 species 0 6332 Alcanivorax borkumensis 59754 1 0 species 2638842 1 6088 0 no rank 0 species 6088 Alcanivorax sp. NBRC 101098 1113728 1 0 species Alcanivorax pacificus 701 1 1306787 Alcanivorax dieselolei 964 1 285091 0 species 0 family 1 64 10144 Halomonadaceae 28256 32 5226 Halomonas 2745 15 genus 0 1 94 0 species Halomonas campaniensis 332 1 213554 species 0 Halomonas aestuarii 356 1 1897729 2650 2609666 8 no rank 0 species 0 Halomonas sp. 'Soap Lake #6' 327 1 1949203 species 0 1118153 1 281 Halomonas sp. GFAJ-1 0 species 1 2136172 Halomonas sp. SF2003 405 307 Halomonas sp. 1513 1883416 1 species 0 1504981 1 325 Halomonas sp. KO116 0 species species 0 1 1962264 Halomonas sp. 'Soap Lake #7' 325 1971364 1 387 Halomonas sp. GT species 0 0 species 1610576 1 293 Halomonas sp. R57-5 0 species Halomonas beimenensis 612 1 475662 species 0 1 507626 Halomonas chromatireducens 261 1 115561 Halomonas hydrothermalis 336 species 0 species 0 1178482 1 585 Halomonas huangheensis 3 504090 Kushneria 729 12 1 genus 0 0 species 1 157779 Kushneria marisflavi 226 491 Kushneria konosiri 698828 1 species 0 no rank 0 6 114403 2664 2 1495768 Candidatus Evansia 761 1 1 0 genus Candidatus Evansia muelleri 760 1 1495769 species 0 Candidatus Carsonella 383 2 114185 genus 0 1 1 114186 1 382 Candidatus Carsonella ruddii species 0 1 24 genus 0 235572 2 1520 Candidatus Portiera 1496 Candidatus Portiera aleyrodidarum 91844 1 species 0 2 404432 Salinicola 373 4 1 genus 0 Salinicola tamaricis 369 1 1771309 species 0 5 1 0 genus 2 376488 Halotalea 335 330 Halotalea alkalilenta 376489 1 species 0 288 1 42054 genus 0 species 0 158080 1 288 Chromohalobacter salexigens 7 1 0 genus 2 204286 Cobetia 465 species 0 28258 1 458 Cobetia marina 12 1 0 family 13 135620 Oceanospirillaceae 5361 Thalassolituus 634 2 187492 0 genus 1 1 187493 1 633 Thalassolituus oleivorans 0 species 2 1537406 Bacterioplanes 865 4 1 genus 0 861 Bacterioplanes sanyensis 1249553 1 0 species 0 genus 5 1 Marinobacterium 844 2 48075 Marinobacterium aestuarii 839 1 1821621 species 0 0 genus 4 1 Oleispira 776 2 188907 0 species 772 Oleispira antarctica 188908 1 2230 Marinomonas 28253 4 genus 0 1 9 0 species Marinomonas posidonica 588 1 936476 921 1 196814 no rank 0 0 species 921 Marinomonas sp. MWYL1 400668 1 1 119864 Marinomonas mediterranea 712 0 species 135613 52 13634 Chromatiales 1 66 0 order 7031 Chromatiaceae 1046 18 family 0 1 31 no rank 0 1 82569 328 Chromatiaceae bacterium 2141T.STBD.0c.01a 328 1 1978339 species 0 genus 0 1 5 400 Marichromatium 85076 2 0 species 37487 1 395 Marichromatium purpuratum Candidatus Nitrosoglobus 717 2 1980513 genus 0 12 1 0 species Candidatus Nitrosoglobus terrae 705 1 1630141 13724 2 404 Thiocystis 1 2 0 genus 0 species 1 73141 Thiocystis violascens 402 0 genus 9 1 Thioflavicoccus 383 2 156885 species 0 374 Thioflavicoccus mobilis 80679 1 0 genus 22 1 Nitrosococcus 1973 4 1227 species 0 1 133539 Nitrosococcus halophilus 321 0 species 1 1229 Nitrosococcus oceani 339 species 0 473531 1 1291 Nitrosococcus watsonii Allochromatium 295 2 85072 genus 0 4 1 species 0 291 Allochromatium vinosum 1049 1 0 genus 1 26 2500 Thiodictyon 53392 2 species 0 Candidatus Thiodictyon syntrophicum 2474 1 1166950 1 3 0 family 1676141 3 397 Wenzhouxiangellaceae genus 0 1 1 394 Wenzhouxiangella 1676142 2 393 Wenzhouxiangella marina 1579979 1 0 species 0 no rank 407 2 451214 2 1273155 Thiohalobacter 407 2 1 genus 0 0 species 405 Thiohalobacter thiocyanaticus 585455 1 1 5 family 0 1738654 3 390 Woeseiaceae Woeseia 385 2 1738655 0 genus 3 1 1 1548547 Woeseia oceani 382 species 0 432 Halothiobacillaceae 255526 4 0 family 1 5 Halothiobacillus 427 3 109262 0 genus 23 1 species 0 927 1 213 Halothiobacillus neapolitanus 1 2636392 191 0 no rank 0 species 1860122 1 191 Halothiobacillus sp. LS2 Ectothiorhodospiraceae 4019 18 72276 family 0 64 1 2 1 genus 0 2 85108 Halorhodospira 255 species 0 1053 1 253 Halorhodospira halophila 3 1335745 Spiribacter 481 9 1 genus 0 1335757 1 268 Spiribacter curvatus 0 species 1335746 1 204 Spiribacter salinus species 0 0 genus 1 5 343 Alkalilimnicola 133193 2 Alkalilimnicola ehrlichii 338 1 351052 0 species 2 1765964 Acidihalobacter 574 2 1 0 genus Acidihalobacter prosperus 572 1 160660 species 0 2 1051 Ectothiorhodospira 367 6 1 0 genus 0 no rank 2684909 1 361 0 species 361 Ectothiorhodospira sp. BSL-9 1442136 1 Thioalkalivibrio 1935 6 106633 genus 0 73 1 species 0 1 106634 Thioalkalivibrio versutus 228 0 no rank 1 2621013 320 species 0 320 Thioalkalivibrio sp. K90mix 396595 1 species 0 258 Thioalkalivibrio nitratireducens 186931 1 species 0 108010 1 389 Thioalkalivibrio paradoxus 1 1033854 Thioalkalivibrio sulfidiphilus 667 species 0 Granulosicoccaceae 892 3 449719 0 family 7 1 437504 2 885 Granulosicoccus 1 27 0 genus 1 437505 Granulosicoccus antarcticus 858 species 0 1 102 order 0 135614 52 36598 Xanthomonadales 25 1 family 0 14 1775411 Rhodanobacteraceae 2442 0 genus 1 2 258 Frateuria 70411 2 Frateuria aurantia 256 1 81475 species 0 Dokdonella 349 2 323413 0 genus 3 1 0 species Dokdonella koreensis 346 1 323415 7 1 genus 0 2 75309 Rhodanobacter 486 species 0 479 Rhodanobacter denitrificans 666685 1 genus 0 2233801 1 203 1 2021234 Xanthomonadales bacterium D13 203 species 0 Dyella 889 4 231454 0 genus 9 1 339 Dyella japonica 231455 1 species 0 species 0 1379159 1 258 Dyella jiangningensis 283 Dyella thiooxydans 445710 1 species 0 1 1 genus 0 2 242605 Luteibacter 232 species 0 231 Luteibacter rhizovicinus 242606 1 32033 37 34054 Xanthomonadaceae 1 214 0 family genus 0 83614 1 198 1 2006110 Luteimonas sp. 100111 198 0 species 0 genus 2370 1 3304 3304 Xylella fastidiosa 2371 1 0 species genus 0 213 1 Xanthomonas 17621 17 338 0 species Xanthomonas vesicatoria 596 1 56460 0 species 204 Xanthomonas vasicola 56459 1 species 0 4036 Xanthomonas campestris 339 1 0 species 56458 1 355 Xanthomonas sacchari 0 species 1985254 1 328 Xanthomonas phaseoli 1336 Xanthomonas translucens 343 1 species 0 1 48664 Xanthomonas fragariae 714 0 species 0 species 1 347 Xanthomonas oryzae 3448 Xanthomonas alfalfae 341 1 366650 0 species species 0 442694 1 269 Xanthomonas perforans Xanthomonas axonopodis 226 1 53413 species 0 Xanthomonas euvesicatoria 556 1 456327 species 0 Xanthomonas hortorum 398 1 56454 0 species 4310 2 643453 species group 0 species 0 1 346 Xanthomonas citri 3677 species 0 366648 1 633 Xanthomonas fuscans 0 species 1 29447 Xanthomonas albilineans 291 68 5 5042 Lysobacter 1 31 genus 0 0 species Lysobacter antibioticus 1896 1 84531 1913 Lysobacter capsici 435897 1 species 0 species 0 69 1 430 Lysobacter enzymogenes 1 262324 Lysobacter gummosus 772 species 0 0 genus 64 1 Stenotrophomonas 6850 9 40323 species 0 1 83617 Stenotrophomonas nitritireducens 580 species 0 1 216778 Stenotrophomonas rhizophila 253 3209 1 995085 0 species group 0 species 1 40324 Stenotrophomonas maltophilia 3209 0 no rank 196198 4 2169 0 species 1904944 1 220 Stenotrophomonas sp. LM091 0 species 1 2005046 Stenotrophomonas sp. WZN-1 563 0 species 1 1827305 Stenotrophomonas sp. MYb57 764 1793721 1 622 Stenotrophomonas sp. KCTC 12332 species 0 species 0 Stenotrophomonas acidaminiphila 575 1 128780 83618 3 825 Pseudoxanthomonas 1 6 genus 0 610 Pseudoxanthomonas suwonensis 314722 1 species 0 0 species 209 Pseudoxanthomonas spadix 415229 1 3 1 order 0 6 1240482 Orbales 2127 Orbaceae 2124 5 1240483 family 0 9 1 genus 0 1 3 1155 Gilliamella 1193503 2 species 0 Gilliamella apicola 1152 1 1196095 0 genus 1 9 960 Frischella 1335631 2 951 Frischella perrara 1267021 1 0 species Pseudomonadales 79095 129 72274 order 0 225 1 135621 86 45832 Pseudomonadaceae 1 234 family 0 0 subfamily 1015 351 3 1 6 0 genus 352 3 1015 Azotobacter species 0 1 354 Azotobacter vinelandii 334 0 species 1 353 Azotobacter chroococcum 675 1 1 genus 0 1849530 2 475 Oblitimonas 1697053 1 474 Oblitimonas alkaliphila 0 species 286 80 44108 Pseudomonas 1 921 genus 0 254 Pseudomonas alcaliphila 101564 1 0 species species 0 198620 1 531 Pseudomonas koreensis 7899 196821 30 0 no rank 273 Pseudomonas sp. StFLB209 1028989 1 0 species 0 species 1 2069256 Pseudomonas sp. XWY-1 224 2049589 1 199 Pseudomonas sp. HLS-6 species 0 species 0 Pseudomonas sp. SWI36 307 1 2083052 species 0 1 2067572 Pseudomonas sp. NC02 293 species 0 1 2083051 Pseudomonas sp. SWI6 217 species 0 1 1500687 Pseudomonas sp. St29 252 Pseudomonas sp. LPH1 227 1 1898684 0 species Pseudomonas sp. SWI44 184 1 2083053 species 0 0 species 1 2083054 Pseudomonas sp. LG1D9 218 1 1415630 Pseudomonas sp. TKP 559 0 species 1 2018067 Pseudomonas sp. FDAARGOS_380 154 species 0 species 0 1 1827300 Pseudomonas sp. MYb193 202 species 0 69328 1 208 Pseudomonas sp. VLB120 0 species 1 1931241 Pseudomonas sp. S-6-2 309 0 species 1338689 1 212 Pseudomonas sp. JY-Q 1 1611770 Pseudomonas sp. MRSN12121 235 0 species species 0 221 Pseudomonas sp. PONIH3 1636610 1 species 0 Pseudomonas sp. TCU-HL1 252 1 1856685 0 species 228 Pseudomonas sp. DR 5-09 1534110 1 Pseudomonas sp. GR 6-02 292 1 1659194 species 0 Pseudomonas sp. CCOS 191 227 1 1649877 0 species Pseudomonas sp. UW4 179 1 1207075 species 0 0 species 1294143 1 280 Pseudomonas sp. ATCC 13867 1 1930532 Pseudomonas sp. CC6-YY-74 517 species 0 1 2083055 Pseudomonas sp. LH1G9 157 0 species 0 species 1 1283291 Pseudomonas sp. URMO17WK12:I11 503 0 species 311 Pseudomonas sp. M30-35 1981174 1 species 0 278 Pseudomonas sp. Os17 1500686 1 1 1259844 Pseudomonas sp. FGI182 181 species 0 6448 136845 6 species group 0 species 0 Pseudomonas monteilii 914 1 76759 species 0 47885 1 297 Pseudomonas oryzihabitans species 0 1 303 Pseudomonas putida 3578 0 species 70775 1 226 Pseudomonas plecoglossicida 0 species 443 Pseudomonas fulva 47880 1 0 species 990 Pseudomonas mosselii 78327 1 1788301 1 343 Pseudomonas versuta species 0 species 0 Pseudomonas antarctica 161 1 219572 Pseudomonas parafulva 565 1 157782 0 species 216142 1 232 Pseudomonas rhizosphaerae species 0 237609 1 221 Pseudomonas alkylphenolica species 0 136843 9 8716 species group 0 1 200450 Pseudomonas trivialis 1339 0 species species 0 Pseudomonas protegens 440 1 380021 species 0 166 Pseudomonas orientalis 76758 1 Pseudomonas veronii 188 1 76761 0 species species 0 1 47878 Pseudomonas azotoformans 977 0 species 294 1 5076 Pseudomonas fluorescens 194 Pseudomonas mandelii 75612 1 species 0 47879 1 149 Pseudomonas corrugata species 0 species 0 Pseudomonas poae 187 1 200451 6 136841 5566 species group 0 534 1 1232139 0 species subgroup 0 species 1 1149133 Pseudomonas furukawaii 534 300 1 1076 Pseudomonas mendocina species 0 43263 1 277 Pseudomonas alcaligenes 0 species species 0 1 53412 Pseudomonas resinovorans 308 611 Pseudomonas citronellolis 53408 1 0 species 0 species 287 1 2760 Pseudomonas aeruginosa 534 Pseudomonas brassicacearum 930166 1 species 0 1853130 1 577 Pseudomonas silesiensis 0 species 0 species Pseudomonas knackmussii 281 1 65741 244566 1 180 Pseudomonas lurida 0 species 1 104087 Pseudomonas frederiksbergensis 620 species 0 200 Pseudomonas entomophila 312306 1 species 0 species 0 237610 1 350 Pseudomonas psychrotolerans 1583341 1 451 Pseudomonas cerasi species 0 Pseudomonas cremoricolorata 203 1 157783 species 0 0 species group 1911 2 136842 429 Pseudomonas fragi 296 1 species 0 1482 Pseudomonas chlororaphis 587753 1 0 species 8 136849 4700 species group 0 0 no rank 1 2775504 284 0 species 284 Pseudomonas sp. Lz4W 1206777 1 species 0 710 Pseudomonas syringae group genomosp. 3 251701 1 0 species 188 Pseudomonas cichorii 36746 1 2307 1 251695 0 species subgroup species 0 317 1 2307 Pseudomonas syringae 0 species subgroup 251698 2 785 species 0 1 47877 Pseudomonas amygdali 293 29438 1 492 Pseudomonas savastanoi species 0 0 species 196 Pseudomonas viridiflava 33069 1 46257 1 230 Pseudomonas avellanae species 0 136846 2 2244 species group 0 2016 578833 1 species subgroup 0 species 0 1 316 Pseudomonas stutzeri 2016 228 Pseudomonas balearica 74829 1 0 species 42 468 Moraxellaceae 33038 65 1 family 0 1 280 genus 0 469 25 24805 Acinetobacter 0 species group 11865 909768 5 1 471 Acinetobacter calcoaceticus 1491 species 0 0 species 4137 Acinetobacter pittii 48296 1 0 species Acinetobacter nosocomialis 1192 1 106654 1 1785128 Acinetobacter lactucae 853 0 species species 0 1 470 Acinetobacter baumannii 4192 1 1148157 Acinetobacter oleivorans 831 species 0 1 1789224 Acinetobacter larvae 547 species 0 1324350 1 1068 Acinetobacter equi species 0 Acinetobacter soli 691 1 487316 species 0 Acinetobacter junii 949 1 40215 0 species 0 species 756892 1 370 Acinetobacter indicus species 0 Acinetobacter bereziniae 798 1 106648 0 species 40216 1 449 Acinetobacter radioresistens Acinetobacter haemolyticus 867 1 29430 species 0 1 108981 Acinetobacter schindleri 670 0 species no rank 0 4268 7 196816 Acinetobacter sp. SWBY1 598 1 2079596 species 0 0 species Acinetobacter sp. ACNIH2 711 1 1758189 590 Acinetobacter sp. TTH0-4 1646498 1 0 species Acinetobacter sp. ACNIH1 930 1 1636603 species 0 0 species 1 1808001 Acinetobacter sp. LoGeW2-3 383 species 0 1407071 1 599 Acinetobacter sp. TGL-Y2 457 Acinetobacter sp. NCu2D-2 1608473 1 0 species species 0 658 1 202950 strain 0 62977 1 658 Acinetobacter sp. ADP1 species 0 40214 1 494 Acinetobacter johnsonii genus 0 68 1 Psychrobacter 5650 11 497 440 Psychrobacter arcticus 334543 1 0 species 0 no rank 196806 6 3209 944 Psychrobacter sp. PRwf-1 349106 1 0 species species 0 Psychrobacter sp. P2G3 451 1 1699622 1028416 1 551 Psychrobacter sp. DAB_AL43B 0 species species 0 1699624 1 426 Psychrobacter sp. P11G5 399 Psychrobacter sp. G 571800 1 0 species 1 1720344 Psychrobacter sp. AntiMn-1 438 species 0 1 45610 Psychrobacter urativorans 659 species 0 0 species 386 Psychrobacter cryohalolentis 330922 1 species 0 261164 1 888 Psychrobacter alimentarius 2518 Moraxella 475 5 genus 0 1 13 29433 1 249 Moraxella ovis species 0 480 1 691 Moraxella catarrhalis species 0 species 0 Moraxella osloensis 1017 1 34062 species 0 1 386891 Moraxella bovoculi 548 0 order 1 3 995 Acidiferrobacterales 1692040 6 6 1 family 0 5 1692041 Acidiferrobacteraceae 992 5 1 0 genus 2 1692042 Sulfurifustis 671 species 0 Sulfurifustis variabilis 666 1 1675686 0 genus 4 1 Sulfuricaulis 315 2 1744881 1620215 1 311 Sulfuricaulis limicola species 0 1 341 0 order 91347 246 131040 Enterobacterales family 0 334 1903416 2 0 genus 2 1 Pragia 334 2 82984 species 0 332 Pragia fontium 82985 1 451511 2 491 0 no rank 491 Plesiomonas 702 2 genus 0 1 2 0 species Plesiomonas shigelloides 489 1 703 14 1903412 Hafniaceae 12846 21 1 family 0 8 635 Edwardsiella 11604 45 1 genus 0 0 species 1 1263550 Edwardsiella piscicida 206 0 species 93378 1 149 Edwardsiella hoshinae 0 species 464 Edwardsiella anguillarum 1821960 1 0 species 67780 1 377 Edwardsiella ictaluri 0 species 1 636 Edwardsiella tarda 9571 2676541 2 792 0 no rank 1578828 1 401 Edwardsiella sp. EA181011 0 species 0 species 1 1650654 Edwardsiella sp. LADL05-105 391 3 568 Hafnia 1018 20 1 genus 0 0 no rank 275 2621980 1 1 1848580 Hafnia sp. CBA7124 275 0 species 0 species Hafnia alvei 723 1 569 Obesumbacterium 203 2 82982 0 genus 5 1 species 0 Obesumbacterium proteus 198 1 82983 Pectobacteriaceae 6437 20 1903410 family 0 14 1 84565 5 1703 Sodalis 1 28 genus 0 species 0 1486991 1 307 Candidatus Sodalis pierantonius 1 1239307 Sodalis praecaptivus 286 species 0 0 species 63612 1 255 Sodalis glossinidius species 0 1 1929246 Sodalis endosymbiont of Henestaris halophilus 827 Dickeya 2039 6 204037 0 genus 30 1 0 species 1 204039 Dickeya dianthicola 221 species 0 1778540 1 161 Dickeya fangzhongdai 218 Dickeya dadantii 204038 1 0 species Dickeya zeae 1083 1 204042 0 species 1089444 1 326 Dickeya solani 0 species 0 genus 7 1 Brenneria 368 2 71655 0 species 361 Brenneria goodwinii 1109412 1 2313 Pectobacterium 122277 6 0 genus 1 46 554 1 601 Pectobacterium carotovorum species 0 species 0 1 1905730 Pectobacterium parmentieri 858 0 species 2042057 1 260 Pectobacterium polaris 0 species Pectobacterium wasabiae 312 1 55208 29471 1 236 Pectobacterium atrosepticum 0 species 21782 Yersiniaceae 1903411 38 family 0 1 30 16 613 Serratia 6566 141 1 genus 0 219 Serratia ficaria 61651 1 species 0 0 species 291 Serratia liquefaciens 614 1 no rank 0 2179 2647522 8 0 species 2033438 1 180 Serratia sp. MYb239 104623 1 269 Serratia sp. ATCC 39006 species 0 species 0 768490 1 170 Serratia sp. AS12 671990 1 145 Serratia sp. FGI94 0 species species 0 Serratia sp. AS13 170 1 768493 287 Serratia sp. FS14 1327989 1 species 0 0 species Serratia sp. SSNIH1 240 1 1758196 Serratia sp. SCBI 718 1 488142 species 0 species 0 61652 1 202 Serratia rubidaea 0 species 541 Serratia plymuthica 82996 1 species 0 615 1 2165 Serratia marcescens 28151 1 133 Serratia proteamaculans species 0 0 species 695 Serratia fonticola 47917 1 1745211 2 267 Chania 1 3 0 genus Chania multitudinisentens 264 1 1639108 species 0 genus 0 1 92 13993 Yersinia 629 13 631 1 377 Yersinia intermedia 0 species species 0 476 Yersinia ruckeri 29486 1 331 2653513 1 0 no rank 1 1839800 Yersinia sp. FDAARGOS_228 331 0 species 630 1 1612 Yersinia enterocolitica 0 species 8452 1649845 3 species group 0 1 367190 Yersinia similis 4467 species 0 632 1 2625 Yersinia pestis 0 species 1 633 Yersinia pseudotuberculosis 1360 0 species 1 28152 Yersinia kristensenii 440 species 0 312 Yersinia aleksiciae 263819 1 species 0 species 0 Yersinia aldovae 660 1 29483 950 Yersinia frederiksenii 29484 1 species 0 29485 1 291 Yersinia rohdei 0 species 0 genus 4 1 Gibbsiella 208 2 929812 204 Gibbsiella quercinecans 929813 1 species 0 1 6 genus 0 34037 4 718 Rahnella 492 2 2635087 0 no rank 1 1805933 Rouxiella sp. ERMR1:05 257 species 0 Rahnella sp. Y9602 235 1 741091 0 species species 0 220 Rahnella aquatilis 34038 1 0 family 1 259 58718 Enterobacteriaceae 543 119 Kosakonia 823 5 1330547 0 genus 9 1 0 species 295 Kosakonia radicincitans 283686 1 0 species 1 497725 Kosakonia oryzae 187 0 species 1 208223 Kosakonia cowanii 162 170 Kosakonia sacchari 1158459 1 0 species 642 Lelliottia 1330545 4 0 genus 1 7 Lelliottia amnigena 357 1 61646 0 species 143 Lelliottia jeotgali 1907578 1 0 species 0 species Lelliottia nimipressuralis 135 1 69220 5 36866 2302 no rank 0 1920128 1 172 Enterobacteriaceae bacterium ENNIH3 species 0 1920109 1 163 Enterobacteriaceae bacterium ENNIH2 species 0 693444 1 151 Enterobacteriaceae bacterium strain FGI 57 0 species 2066051 1 157 Enterobacteriaceae bacterium ENNIH1 0 species 0 species 1 891974 Plautia stali symbiont 1659 0 genus 26 1 Cronobacter 1246 8 413496 1 535744 Cronobacter universalis 110 0 species Cronobacter malonaticus 132 1 413503 0 species 0 species Cronobacter turicensis 136 1 413502 species 0 294 Cronobacter sakazakii 28141 1 192 Cronobacter dublinensis 413497 1 0 species 0 species 1163710 1 195 Cronobacter condimenti 413501 1 161 Cronobacter muytjensii species 0 328 Shigella 620 4 0 genus 1 7 1 622 Shigella dysenteriae 162 species 0 64 1 2629414 no rank 0 1813821 1 64 Shigella sp. PAMC 28760 0 species 95 Shigella flexneri 623 1 0 species 3 590 Salmonella 6910 6 1 0 genus Salmonella bongori 543 1 54736 0 species 0 species 28901 1 6361 Salmonella enterica 3763 Citrobacter 544 14 0 genus 1 118 species 0 67824 1 564 Citrobacter farmeri Citrobacter rodentium 148 1 67825 species 0 0 species 410 Citrobacter amalonaticus 35703 1 0 no rank 326 2644389 2 species 0 1 1702170 Citrobacter sp. FDAARGOS_156 120 species 0 1 1920110 Citrobacter sp. CFNIH10 206 0 species Citrobacter koseri 173 1 545 2024 1344959 7 species group 0 species 0 Citrobacter werkmanii 296 1 67827 0 species 122 Citrobacter freundii complex sp. CFNIH3 2077147 1 0 species 166 Citrobacter freundii complex sp. CFNIH4 2077148 1 species 0 Citrobacter freundii 877 1 546 Citrobacter freundii complex sp. CFNIH9 143 1 2077149 0 species 0 species Citrobacter braakii 273 1 57706 0 species 1 2066049 Citrobacter freundii complex sp. CFNIH2 147 genus 0 1 4 934 Candidatus Ishikawaella 409304 2 Candidatus Ishikawaella capsulata 930 1 168169 0 species 561 5 11487 Escherichia 1 13 0 genus species 0 106 Escherichia fergusonii 564 1 1499973 1 148 Escherichia marmotae 0 species 562 1 10781 Escherichia coli species 0 439 Escherichia albertii 208962 1 species 0 102 1 genus 0 10 570 Klebsiella 12629 1 2026240 Klebsiella quasivariicola 239 0 species 1 571 Klebsiella oxytoca 1332 species 0 Klebsiella variicola 483 1 244366 0 species 0 species 548 1 2889 Klebsiella aerogenes 0 species 1134687 1 763 Klebsiella michiganensis 5993 Klebsiella pneumoniae 573 1 species 0 Klebsiella quasipneumoniae 289 1 1463165 species 0 no rank 0 539 2608929 2 1934254 1 231 Klebsiella sp. M5al species 0 species 0 308 Klebsiella sp. LTGPAF-6F 1905288 1 8498 191675 20 0 no rank 8498 84563 20 0 clade 0 genus 1906659 1 168 species 0 1 1778263 Candidatus Hoaglandella endobia 168 199891 1 394 clade 0 394 secondary endosymbiont of Trabutina mannipara 1835721 1 species 0 0 genus 3 1 Candidatus Tachikawaea 1104 2 1682492 species 0 1410383 1 1101 Candidatus Tachikawaea gelatinosa 0 clade 4 146507 1586 species 0 1 1199245 secondary endosymbiont of Ctenarytaina eucalypti 259 669 Candidatus Hamiltonella 568987 2 0 genus 1 2 species 0 138072 1 667 Candidatus Hamiltonella defensa 134287 1 658 secondary endosymbiont of Heteropsylla cubana 0 species genus 0 485 1 1906661 1 1070130 Candidatus Gullanella endobia 485 species 0 2 1906660 Candidatus Mikella 476 1 1 0 genus 475 Candidatus Mikella endobia 1778264 1 species 0 0 clade 4151 7 84564 4151 Candidatus Blochmannia 203804 7 0 genus 1 34 597 Candidatus Blochmannia chromaiodes 251542 1 species 0 629 Candidatus Blochmannia pennsylvanicus 101534 1 species 0 0 species 203907 1 763 Candidatus Blochmannia floridanus 0 species 840 Candidatus Blochmannia vafer 251535 1 no rank 0 2 711328 1288 606 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505596 1 0 species 682 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505597 1 0 species 2 1906657 Candidatus Doolittlea 134 2 1 genus 0 1 1778262 Candidatus Doolittlea endobia 132 0 species 22 547 Enterobacter 4952 190 1 0 genus species group 0 3664 354276 12 1 1812935 Enterobacter cloacae complex 'Hoffmann cluster IV' 67 0 species 0 species Enterobacter cloacae 1593 1 550 species 0 1 69218 Enterobacter cancerogenus 92 0 species 104 Enterobacter ludwigii 299767 1 0 no rank 3 2757714 296 88 Enterobacter cloacae complex sp. ECNIH7 1915310 1 species 0 species 0 1 2077137 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 117 2027919 1 91 Enterobacter cloacae complex bacterium 0 species species 0 144 Enterobacter kobei 208224 1 Enterobacter asburiae 354 1 61645 0 species 158836 3 1014 Enterobacter hormaechei 1 737 species 0 subspecies 0 172 Enterobacter cloacae complex 'Hoffmann cluster III' 1812934 1 0 subspecies 1296536 1 105 Enterobacter xiangfangensis 0 no rank 9 2608935 1098 1 1166130 Enterobacter sp. R4-368 158 species 0 136 Enterobacter sp. ODB01 1827481 1 0 species 0 species Enterobacter sp. CRENT-193 136 1 2051905 species 0 Enterobacter sp. HK169 67 1 1868135 Enterobacter sp. Crenshaw 93 1 1977566 0 species species 0 147 Enterobacter sp. FY-07 1692238 1 Enterobacter sp. E20 75 1 1560339 species 0 species 0 125 Enterobacter sp. SA187 1914861 1 1 399742 Enterobacter sp. 638 161 species 0 207 1048757 1 genus 0 Candidatus Moranella endobia 207 1 1048758 species 0 2 401618 Candidatus Riesia 631 10 1 genus 0 species 0 401619 1 621 Candidatus Riesia pediculicola 0 genus 576 2 1330546 Pluralibacter gergoviae 370 1 61647 0 species 0 species 1334193 1 206 [Enterobacter] lignolyticus genus 0 1 3 963 Raoultella 160674 3 Raoultella planticola 239 1 575 0 species 54291 1 721 Raoultella ornithinolytica 0 species genus 0 1 579 213 1 61648 Kluyvera intermedia 213 0 species Leclercia 579 4 83654 0 genus 22 1 0 no rank 2 2627398 364 Leclercia sp. LSNIH3 159 1 1920116 0 species 1 1920114 Leclercia sp. LSNIH1 205 species 0 83655 1 193 Leclercia adecarboxylata species 0 1 2 genus 0 158483 2 591 Cedecea 589 Cedecea neteri 158822 1 species 0 genus 0 1335483 1 185 0 species 1 563 Shimwellia blattae 185 22 1903414 Morganellaceae 10722 44 1 family 0 3 583 Proteus 3016 16 1 genus 0 0 species 585 1 957 Proteus vulgaris 1 584 Proteus mirabilis 2043 0 species Photorhabdus 1724 4 29487 0 genus 16 1 0 species Photorhabdus asymbiotica 781 1 291112 species 0 418 Photorhabdus temperata 574560 1 species 0 29488 1 509 Photorhabdus luminescens genus 0 1 16 2097 Providencia 586 4 0 species Providencia alcalifaciens 390 1 126385 0 species 920 Providencia stuartii 588 1 0 species 771 Providencia rettgeri 587 1 2372 Xenorhabdus 626 6 0 genus 1 20 species 0 1 40577 Xenorhabdus poinarii 389 species 0 1 40576 Xenorhabdus bovienii 851 0 species Xenorhabdus hominickii 440 1 351679 1 351671 Xenorhabdus doucetiae 313 0 species 0 species 628 1 359 Xenorhabdus nematophila 1106 Arsenophonus 637 2 genus 0 1 6 0 species Arsenophonus symbiont of Lipoptena fortisetosa 1100 1 634113 0 genus 1 4 363 Morganella 581 2 Morganella morganii 359 1 582 0 species 28 1903409 Erwiniaceae 19369 38 1 family 0 1 13 genus 0 551 8 1897 Erwinia no rank 0 1 2622719 233 species 0 215689 1 233 Erwinia sp. Ejp617 species 0 1619313 1 230 Erwinia gerundensis 0 species 79967 1 182 Erwinia pyrifoliae 1 552 Erwinia amylovora 163 species 0 450 Candidatus Erwinia sp. ErCipseudotaxifoliae 1922217 1 0 species 0 species 438 Erwinia billingiae 182337 1 0 species 1 338565 Erwinia tasmaniensis 188 genus 0 1 3 239 Tatumella 82986 2 species 0 53336 1 236 Tatumella citrea 1 17 genus 0 51228 2 1978 Wigglesworthia species 0 1 51229 Wigglesworthia glossinidia 1961 genus 0 1 40 10923 Buchnera 32199 2 species 0 10883 Buchnera aphidicola 9 1 11 53335 Pantoea 3727 82 1 0 genus 1076550 1 191 Pantoea rwandensis species 0 748 Candidatus Pantoea carbekii 1235990 1 0 species 1891675 1 214 Pantoea alhagi 0 species 1654067 1 390 species group 0 1 549 Pantoea agglomerans 390 0 species 0 species Pantoea vagans 677 1 470934 no rank 0 654 2630326 3 1484158 1 205 Pantoea sp. PSNIH1 0 species 1 1484157 Pantoea sp. PSNIH2 173 0 species 592316 1 276 Pantoea sp. At-9b 0 species species 0 66269 1 283 Pantoea stewartii species 0 1 553 Pantoea ananatis 488 567 2100764 2 0 genus species 0 Pantoea calida 341 1 665913 665914 1 226 Pantoea gaviniae 0 species 1 4 order 0 1775403 4 335 Nevskiales 2 Sinobacteraceae 568386 1 family 0 2689614 2 329 family 0 genus 0 1 7 329 Steroidobacter 469322 2 species 0 Steroidobacter denitrificans 322 1 465721 33811 2 768 0 no rank 457 gamma proteobacterium HdN1 83406 1 species 0 endosymbiont of unidentified scaly snail isolate Monju 311 1 1248727 species 0 1706369 30 8795 Cellvibrionales 1 45 0 order 0 family 1 6 1492 Microbulbiferaceae 1706373 5 0 genus 35 1 Microbulbifer 1486 4 48073 species 0 Microbulbifer thermotolerans 462 1 252514 1 1769779 Microbulbifer aggregans 509 species 0 0 species Microbulbifer agarilyticus 480 1 260552 Spongiibacteraceae 2181 7 1706375 family 0 23 1 1084558 2 1086 Oceanicoccus 1 1 0 genus 0 species 1 716816 Oceanicoccus sagamiensis 1085 4 1 0 genus 2 630749 Spongiibacter 566 2631504 1 562 0 no rank species 0 Spongiibacter sp. IMCC21906 562 1 1620392 2 1434050 Zhongshania 506 9 1 0 genus 1 1470434 Zhongshania aliphaticivorans 497 0 species 3913 Cellvibrionaceae 1706371 13 family 0 1 22 Teredinibacter 554 2 2425 genus 0 3 1 Teredinibacter turnerae 551 1 2426 species 0 2036021 2 945 Agarilytica 1 2 genus 0 Agarilytica rhodophyticola 943 1 1737490 0 species 316625 2 699 Saccharophagus 1 1 genus 0 species 0 1 86304 Saccharophagus degradans 698 308 Simiduia 447467 2 genus 0 1 4 1 447471 Simiduia agarivorans 304 0 species 8 1 0 genus 4 10 Cellvibrio 1385 933 2 2624793 no rank 0 0 species Cellvibrio sp. PSBB006 454 1 1987723 0 species 1945512 1 479 Cellvibrio sp. PSBB023 155077 1 444 Cellvibrio japonicus species 0 1706372 4 1164 Halieaceae 1 7 0 family 1157 Halioglobus 1217416 3 genus 0 1 23 species 0 559 Halioglobus pacificus 930806 1 930805 1 575 Halioglobus japonicus species 0 5 1 0 order 13 135618 Methylococcales 3236 Methylococcaceae 3231 12 403 0 family 28 1 2 413 Methylococcus 223 2 1 0 genus Methylococcus capsulatus 221 1 414 0 species 0 genus 8 1 Methylomicrobium 852 2 39773 271065 1 844 Methylomicrobium alcaliphilum species 0 1860 Methylomonas 416 5 0 genus 1 69 Methylomonas methanica 356 1 421 0 species 1 1538553 Methylomonas denitrificans 785 species 0 2608980 1 334 0 no rank species 0 1 1727196 Methylomonas sp. DH-1 334 316 Methylomonas koyamae 702114 1 0 species 1 3 0 genus 762296 2 268 Methylovulum species 0 1704499 1 265 Methylovulum psychrotolerans 159 1 0 order 105 135622 Alteromonadales 110182 Pseudoalteromonadaceae 20385 25 267888 0 family 19 1 342 1 0 genus 24 53246 Pseudoalteromonas 20366 1 1348114 Pseudoalteromonas piratica 808 0 species Pseudoalteromonas rubra 487 1 43658 0 species 0 species Pseudoalteromonas aliena 789 1 247523 Pseudoalteromonas piscicida 530 1 43662 species 0 Pseudoalteromonas marina 624 1 267375 species 0 1 176102 Pseudoalteromonas agarivorans 771 0 species species 0 745 Pseudoalteromonas luteoviolacea 43657 1 no rank 0 5 194690 6346 746 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1720343 1 species 0 1 234831 Pseudoalteromonas sp. SM9913 690 0 species 0 species 1514074 1 3483 Pseudoalteromonas sp. NC201 species 0 1 1761891 Pseudoalteromonas sp. 13-15 637 species 0 283699 1 790 Pseudoalteromonas sp. Bsw20308 0 species 692 Pseudoalteromonas haloplanktis 228 1 species 0 Pseudoalteromonas espejiana 645 1 28107 species 0 Pseudoalteromonas nigrifaciens 747 1 28109 species 0 1033 Pseudoalteromonas tunicata 314281 1 43659 1 588 Pseudoalteromonas tetraodonis 0 species 298657 1 1102 Pseudoalteromonas spongiae species 0 species 0 Pseudoalteromonas translucida 724 1 166935 0 species 1 394751 Pseudoalteromonas arctica 819 species 0 570 Pseudoalteromonas issachenkonii 152297 1 1240 Pseudoalteromonas atlantica 288 1 species 0 764 Pseudoalteromonas phenolica 161398 1 species 0 family 0 1 15 21529 Shewanellaceae 267890 25 150 1 genus 0 24 22 Shewanella 21514 species 0 Shewanella psychrophila 1591 1 225848 271098 1 5483 Shewanella halifaxensis species 0 627 Shewanella denitrificans 192073 1 0 species 70864 1 575 Shewanella pealeana 0 species 0 species Shewanella putrefaciens 474 1 24 0 no rank 2243 6 196818 Shewanella sp. WE21 323 1 2029986 0 species 0 species 94122 1 376 Shewanella sp. ANA-3 355 Shewanella sp. MR-7 60481 1 0 species 60480 1 305 Shewanella sp. MR-4 0 species 0 species 1 2059264 Shewanella sp. Pdp11 492 351745 1 392 Shewanella sp. W3-18-1 0 species species 0 Shewanella oneidensis 362 1 70863 species 0 Shewanella marisflavi 239 1 260364 Shewanella frigidimarina 1076 1 56812 0 species 1 60217 Shewanella violacea 2581 0 species 1 404011 Shewanella piezotolerans 565 species 0 species 0 1 271097 Shewanella sediminis 712 species 0 93973 1 1378 Shewanella japonica 296 Shewanella loihica 359303 1 species 0 1 2018305 Shewanella bicestrii 287 species 0 Shewanella woodyi 972 1 60961 0 species 190 Shewanella amazonensis 60478 1 0 species 0 species 1 62322 Shewanella baltica 1713 Alteromonadaceae 53413 29 72275 family 0 34 1 genus 0 101 1 Alteromonas 44654 10 226 species 0 Alteromonas stellipolaris 806 1 233316 589873 1 971 Alteromonas australica 0 species 35125 Alteromonas macleodii 28108 1 0 species 715451 1 707 Alteromonas naphthalenivorans species 0 Alteromonas addita 678 1 287094 species 0 no rank 0 2614992 3 2288 species 0 1777491 1 595 Alteromonas sp. Mac1 0 species 831 Alteromonas sp. RW2A1 1917158 1 0 species Alteromonas sp. MB-3u-76 862 1 2058133 species 0 Alteromonas mediterranea 3978 1 314275 Paraglaciecola 1746 2 1621534 genus 0 5 1 species 0 Paraglaciecola psychrophila 1741 1 326544 Glaciecola 1520 3 89404 genus 0 11 1 1 300231 Glaciecola nitratireducens 734 0 species 0 no rank 775 1 2618684 983545 1 775 Glaciecola sp. 4H-3-7+YE-5 species 0 1751872 1 454 genus 0 Lacimicrobium alkaliphilum 454 1 1526571 species 0 1 2 genus 0 261825 2 463 Agarivorans 0 species 461 Agarivorans gilvus 680279 1 4542 Marinobacter 2742 10 genus 0 1 75 330734 1 367 Marinobacter psychrophilus 0 species 1049 83889 3 no rank 0 species 0 382 Marinobacter sp. BSs20148 490759 1 species 0 1 1671721 Marinobacter sp. CP1 348 Marinobacter sp. LQ44 319 1 1749259 0 species 0 species 1 2743 Marinobacter hydrocarbonoclasticus 476 1724 Marinobacter salarius 1420917 1 species 0 1033846 1 290 Marinobacter adhaerens 0 species 297 Marinobacter salinus 1874317 1 species 0 1 1420916 Marinobacter similis 264 species 0 1 15 family 0 267891 3 1282 Moritellaceae 1267 Moritella 58050 2 genus 0 1 5 1 80854 Moritella viscosa 1262 species 0 244 Ferrimonadaceae 267892 3 0 family 1 1 genus 0 1 5 243 Ferrimonas 44011 2 44012 1 238 Ferrimonas balearica species 0 family 0 1 2 2779 Psychromonadaceae 267894 4 7 1 0 genus 3 67572 Psychromonas 2777 1331 Psychromonas ingrahamii 357794 1 0 species no rank 0 1439 2614957 1 species 0 1 314282 Psychromonas sp. CNPT3 1439 6 267893 Idiomarinaceae 1322 3 1 0 family 135575 5 1319 Idiomarina 1 15 genus 0 135577 1 354 Idiomarina loihiensis 0 species 616 2614829 2 0 no rank 2100422 1 303 Idiomarina sp. OT37-5b 0 species 1 2055892 Idiomarina sp. X4 313 species 0 0 species 1 1096243 Idiomarina piscisalsi 334 family 0 1 11 9069 Colwelliaceae 267889 9 28228 6 7936 Colwellia 1 27 0 genus 0 no rank 3 196834 4558 species 0 Colwellia sp. MT41 1446 1 58049 species 0 Colwellia sp. PAMC 20917 1192 1 1816218 Colwellia sp. PAMC 21821 1920 1 1816219 species 0 1993 Colwellia beringensis 1967665 1 species 0 0 species Colwellia psychrerythraea 1358 1 28229 genus 0 6 1 Thalassotalea 1122 2 1518149 species 0 1 1763536 Thalassotalea crassostreae 1116 class 0 580370 4 435 580371 4 435 Mariprofundales 1 7 0 order 580372 3 428 family 0 1 16 0 genus 377315 3 428 Mariprofundus 1921086 1 211 Mariprofundus aestuarium 0 species species 0 1921087 1 201 Mariprofundus ferrinatatus 347 28216 Betaproteobacteria 140267 107 1 0 class 0 no rank 6025 119066 11 genus 0 859 1 1381133 669502 1 859 Candidatus Profftella armatura 0 species 21 1 0 genus 6 33055 Kinetoplastibacterium 4646 Candidatus Kinetoplastibacterium oncopeltii 896 1 994696 species 0 1 33056 Candidatus Kinetoplastibacterium crithidii 1103 species 0 0 species 1 994695 Candidatus Kinetoplastibacterium galatii 738 0 species 1 994692 Candidatus Kinetoplastibacterium desouzaii 1183 species 0 233181 1 705 Kinetoplastibacterium blastocrithidii 0 genus 1 1 Candidatus Accumulibacter 292 2 327159 Candidatus Accumulibacter phosphatis 291 1 327160 0 species 38 1 189384 genus 0 species 0 38 Candidatus Tremblaya princeps 189385 1 190 1 1301080 genus 0 190 Candidatus Nasuia deltocephalinicola 1160784 1 species 0 33809 2 624 0 no rank 0 species 1904640 1 276 Betaproteobacteria bacterium GR16-43 1 543913 beta proteobacterium CB 348 species 0 order 0 67 1 Nitrosomonadales 8780 43 32003 440 Sterolibacteriaceae 2008793 5 family 0 1 2 1 3 genus 0 378210 2 217 Methyloversatilis 0 no rank 2639971 1 214 Methyloversatilis sp. RAC08 214 1 1842540 species 0 2 1054211 Sulfuritalea 221 4 1 0 genus species 0 Sulfuritalea hydrogenivorans 217 1 748811 1 1 family 0 3 2008790 Thiobacillaceae 187 genus 0 1 13 186 Thiobacillus 919 2 1 36861 Thiobacillus denitrificans 173 species 0 family 0 13 1 Gallionellaceae 498 5 90627 genus 0 1 1 Gallionella 276 2 96 species 0 275 Gallionella capsiferriformans 370405 1 Sideroxydans 209 2 314343 genus 0 10 1 species 0 Sideroxydans lithotrophicus 199 1 63745 0 family 1 18 3306 Methylophilaceae 32011 13 16 2 231 Methylophilus 1 1 0 genus 230 2630143 1 0 no rank 0 species 230 Methylophilus sp. TWE2 1662285 1 0 genus 404 1 203 0 species 203 Methylobacillus flagellatus 405 1 3 81682 Methylovorus 381 7 1 genus 0 1 2634027 180 0 no rank species 0 180 Methylovorus sp. MP688 887061 1 Methylovorus glucosotrophus 194 1 266009 0 species Candidatus Methylopumilus 1478 3 1679002 0 genus 12 1 414 Candidatus Methylopumilus turicensis 1581680 1 species 0 species 0 1581557 1 1052 Candidatus Methylopumilus planktonicus 3 359407 Methylotenera 995 11 1 genus 0 308 Methylotenera mobilis 359408 1 species 0 Methylotenera versatilis 676 1 1055487 species 0 489 2772226 4 0 family 2 1778653 Sulfuriferula 227 2 1 genus 0 1 2637784 225 0 no rank 1985873 1 225 Sulfuriferula sp. AH1 0 species 1 5 genus 0 935200 2 262 Sulfuricella 1 649841 Sulfuricella denitrificans 257 0 species 0 family 13 1 Nitrosomonadaceae 3793 12 206379 0 genus 1 20 3237 Nitrosomonas 914 7 0 no rank 1426 2609265 2 153948 1 908 Nitrosomonas sp. AL212 0 species 261292 1 518 Nitrosomonas sp. Is79A3 0 species species 0 1 44577 Nitrosomonas ureae 542 915 1 245 Nitrosomonas europaea species 0 species 0 44574 1 610 Nitrosomonas communis 0 species Nitrosomonas eutropha 394 1 916 Nitrosospira 543 4 35798 0 genus 7 1 Nitrosospira multiformis 149 1 1231 0 species 0 species 35799 1 144 Nitrosospira briensis species 0 1 1288494 Nitrosospira lacus 243 0 order 64 1 Neisseriales 8265 37 206351 family 0 29 1 Chromobacteriaceae 2512 13 1499392 no rank 0 1479 90153 4 4 535 Chromobacterium 1479 25 1 genus 0 382 2641838 1 no rank 0 1 2059672 Chromobacterium sp. ATCC 53434 382 0 species species 0 Chromobacterium violaceum 406 1 536 species 0 666 Chromobacterium vaccinii 1108595 1 5 1 genus 0 2 885864 Jeongeupia 241 2619593 1 236 0 no rank Jeongeupia sp. USM3 236 1 1906741 species 0 1 6 0 genus 168470 2 278 Laribacter 1 168471 Laribacter hongkongensis 272 species 0 genus 0 1 5 248 Aquaspirillum 187 2 no rank 0 243 1 2620219 1 1938604 Aquaspirillum sp. LM1 243 species 0 2 568394 Pseudogulbenkiania 237 3 1 0 genus 2642558 1 234 no rank 0 234 Pseudogulbenkiania sp. NH8B 748280 1 species 0 22 1 0 family 23 481 Neisseriaceae 5689 482 12 2600 Neisseria 1 53 0 genus species 0 130 Neisseria mucosa 488 1 species 0 784 Neisseria meningitidis 487 1 species 0 Neisseria gonorrhoeae 278 1 485 species 0 Neisseria lactamica 232 1 486 0 species 495 1 158 Neisseria elongata species 0 Neisseria weaveri 195 1 28091 1853278 1 129 Neisseria sp. 10023 0 species 192 Neisseria zoodegmatis 326523 1 species 0 330 2623750 2 0 no rank 158 Neisseria sp. 10022 1853276 1 0 species species 0 1 655307 Neisseria sp. KEM232 172 species 0 490 1 119 Neisseria sicca 1193515 2 919 Snodgrassella 1 4 0 genus 915 Snodgrassella alvi 1196083 1 species 0 1 2 0 genus 71 2 387 Simonsiella Simonsiella muelleri 385 1 72 0 species 0 genus 1 1 Eikenella 268 2 538 0 species Eikenella corrodens 267 1 539 421605 1 743 0 no rank species 0 2052837 1 743 Neisseriaceae bacterium DSM 100970 1 5 genus 0 59 3 750 Vitreoscilla 0 species 223 Vitreoscilla filiformis 63 1 0 no rank 522 2627922 1 Vitreoscilla sp. C1 522 1 96942 0 species 80840 231 112859 Burkholderiales 1 849 0 order 224471 17 4939 0 no rank 8 1 0 genus 2 212743 Rhizobacter 341 species 0 333 Rhizobacter gummiphilus 946333 1 species 0 413882 1 722 [Polyangium] brachysporum 2 1 0 genus 2 65047 Mitsuaria 509 0 no rank 507 1 2648776 0 species 507 Mitsuaria sp. 7 1658665 1 0 genus 2 1 Paucibacter 622 2 318147 no rank 0 620 2642959 1 1768242 1 620 Paucibacter sp. KCTC 42545 0 species genus 0 1 8 374 Rubrivivax 28067 2 Rubrivivax gelatinosus 366 1 28068 0 species 386 Methylibium 316612 2 0 genus 1 8 Methylibium petroleiphilum 378 1 105560 0 species Leptothrix 351 2 88 0 genus 7 1 species 0 1 34029 Leptothrix cholodnii 344 370 Thiomonas 32012 2 genus 0 1 11 0 species Thiomonas intermedia 359 1 926 93681 2 1264 Roseateles 1 4 0 genus Roseateles depolymerans 1260 1 76731 0 species 84 119060 Burkholderiaceae 63611 198 1 family 0 6819 Pandoraea 93217 10 genus 0 1 66 702 Pandoraea oxalativorans 573737 1 species 0 1 93221 Pandoraea pulmonicola 3130 0 species species 0 Pandoraea norimbergensis 923 1 93219 0 species 1 656178 Pandoraea vervacti 322 93220 1 544 Pandoraea pnomenusa species 0 0 species 93218 1 336 Pandoraea apista 301 Pandoraea faecigallinarum 656179 1 species 0 0 species Pandoraea sputorum 265 1 93222 445709 1 230 Pandoraea thiooxydans 0 species 0 genus 778 1 Burkholderia 35748 41 32008 species group 0 87882 19 13414 1503055 1 247 Burkholderia territorii 0 species 95486 1 1668 Burkholderia cenocepacia species 0 Burkholderia ubonensis 1173 1 101571 0 species 0 species 60550 1 272 Burkholderia pyrrocinia species 0 Burkholderia ambifaria 575 1 152480 0 species 488447 1 519 Burkholderia contaminans 1 488729 Burkholderia metallica 326 0 species species 0 265293 1 325 [Pseudomonas] mesoacidophila 318 Burkholderia dolosa 152500 1 0 species 0 species 87883 1 826 Burkholderia multivorans 95485 1 554 Burkholderia stabilis 0 species 0 species 488732 1 288 Burkholderia diffusa species 0 1503054 1 328 Burkholderia stagnalis 1 488446 Burkholderia latens 890 species 0 species 0 1 60552 Burkholderia vietnamiensis 891 Burkholderia lata 1721 1 482957 species 0 Burkholderia cepacia 1859 1 292 species 0 0 species 325 Burkholderia seminalis 488731 1 Burkholderia pseudomultivorans 309 1 1207504 0 species 0 species Burkholderia gladioli 771 1 28095 4100 11 2613784 no rank 0 species 0 1 1678678 Burkholderia sp. HB1 446 640512 1 449 Burkholderia sp. CCGE1003 0 species 1 1097668 Burkholderia sp. YI23 523 species 0 1 416344 Burkholderia sp. KJ006 330 0 species species 0 Burkholderia sp. 2002721687 299 1 1468409 1 640510 Burkholderia sp. CCGE1001 411 0 species 0 species 290 Burkholderia sp. Bp5365 1740162 1 species 0 1740163 1 300 Burkholderia sp. Bp7605 0 species 248 Burkholderia sp. PAMC 26561 1795043 1 0 species 1795874 1 232 Burkholderia sp. PAMC 28687 1 758796 Burkholderia sp. RPE67 572 species 0 0 species 1058 Burkholderia glumae 337 1 species 0 41899 1 437 Burkholderia plantarii 7 111527 15190 0 species group species 0 57975 1 1203 Burkholderia thailandensis 1637831 1 796 Burkholderia sp. MSMB617WGS species 0 species 0 Burkholderia oklahomensis 1310 1 342113 Burkholderia pseudomallei 9191 1 28450 species 0 0 species 1 1637841 Burkholderia sp. MSMB0852 914 1 1637837 Burkholderia sp. MSMB0266 610 species 0 species 0 13373 1 1166 Burkholderia mallei 0 genus 1827195 1 427 1 758793 Burkholderia sp. RPE64 427 species 0 92 1 0 genus 9 106589 Cupriavidus 8216 species 0 Cupriavidus necator 564 1 106590 0 species 82541 1 402 Cupriavidus gilardii 2640874 2 2112 no rank 0 1243 Cupriavidus sp. USMAA2-4 876364 1 0 species 1 1389192 Cupriavidus sp. USMAHM13 869 species 0 0 species 1 248026 Cupriavidus pinatubonensis 357 367825 1 856 Cupriavidus sp. USMAA1020 0 species Cupriavidus metallidurans 2520 1 119219 0 species 1313 Cupriavidus basilensis 68895 1 0 species 5 48736 Ralstonia 3556 38 1 genus 0 Ralstonia solanacearum 2179 1 305 0 species 0 species 105219 1 437 Ralstonia mannitolilytica 547 Ralstonia pickettii 329 1 species 0 0 species 1 190721 Ralstonia insidiosa 355 0 genus 105 1 Paraburkholderia 7149 12 1822464 species 0 1 134537 Paraburkholderia fungorum 505 515 2615204 1 no rank 0 species 0 1926494 1 515 Paraburkholderia sp. SOS3 75105 1 986 Paraburkholderia caribensis 0 species 0 species 1 36873 Paraburkholderia xenovorans 544 0 species 1 148447 Paraburkholderia phymatum 590 Paraburkholderia aromaticivorans 450 1 2026199 species 0 0 species 1 948107 Paraburkholderia sprentiae 413 species 0 388 Paraburkholderia terrae 311230 1 0 species 252970 1 395 Paraburkholderia phenoliruptrix 523 Paraburkholderia hospita 169430 1 0 species 1 261302 Paraburkholderia phytofirmans 1735 0 species 217 1 2571159 0 genus 0 species 1 412963 Paraburkholderia rhizoxinica 217 genus 0 12 1 Polynucleobacter 1281 4 44013 1 1835254 Polynucleobacter duraquae 356 species 0 0 species Polynucleobacter necessarius 284 1 576610 629 Polynucleobacter asymbioticus 576611 1 species 0 family 0 1 135 19776 Comamonadaceae 80864 56 0 genus 424 2 2490452 Comamonadaceae bacterium B1 208 1 1458426 species 0 Comamonadaceae bacterium A1 216 1 1458425 species 0 genus 0 241 1 2678886 0 species 241 Melaminivora sp. SC2-7 2116657 1 0 genus 362 665874 2 2 2626134 362 no rank 0 193 Limnohabitans sp. 63ED37-2 1678128 1 0 species 1 1678129 Limnohabitans sp. 103DPR2 169 species 0 352450 1 189 genus 0 0 species 189 Simplicispira sp. SC1-8 2109915 1 0 genus 1 1 Diaphorobacter 255 2 238749 1 1546149 Diaphorobacter polyhydroxybutyrativorans 254 0 species 3 1 genus 0 3 219181 Ottowia 479 0 species Ottowia sp. KADR8-3 265 1 2109914 211 2645081 1 no rank 0 species 0 1658672 1 211 Ottowia sp. oral taxon 894 Hydrogenophaga 912 4 47420 0 genus 4 1 307 Hydrogenophaga crassostreae 1763535 1 species 0 2610897 2 601 0 no rank species 0 Hydrogenophaga sp. PBC 288 1 795665 1842537 1 313 Hydrogenophaga sp. RAC07 species 0 5 28065 Rhodoferax 1119 5 1 genus 0 1 81479 Rhodoferax antarcticus 315 0 species Rhodoferax saidenbachensis 191 1 1484693 species 0 1842727 1 355 Rhodoferax koreense species 0 253 Rhodoferax ferrireducens 192843 1 0 species 0 genus 2 1 Polaromonas 2151 3 52972 2638319 1 1476 0 no rank 0 species 296591 1 1476 Polaromonas sp. JS666 0 species 1 216465 Polaromonas naphthalenivorans 673 34072 5 4664 Variovorax 1 46 genus 0 0 species 1 34073 Variovorax paradoxus 3060 391 Variovorax boronicumulans 436515 1 0 species 1167 2 663243 no rank 0 1 1795631 Variovorax sp. PAMC 28711 674 species 0 species 0 493 Variovorax sp. PMC12 2126319 1 1 1 0 genus 2 1436289 Candidatus Symbiobacter 353 0 species Candidatus Symbiobacter mobilis 352 1 1436290 Acidovorax 2437 9 12916 genus 0 79 1 80867 1 437 Acidovorax avenae 0 species 721785 1 233 Acidovorax ebreus species 0 0 species Acidovorax citrulli 296 1 80869 186 Acidovorax sp. NA3 553814 1 0 species 4 2684926 1206 0 no rank 0 species 241 Acidovorax sp. KKS102 358220 1 species 0 267 Acidovorax sp. RAC01 1842533 1 species 0 1 1858609 Acidovorax sp. T1 463 species 0 232721 1 235 Acidovorax sp. JS42 0 genus 30 1 Delftia 1934 5 80865 0 species 180282 1 425 Delftia tsuruhatensis 1043 2 2613839 no rank 0 0 species Delftia sp. HK171 462 1 1920191 581 Delftia sp. Cs1-4 742013 1 species 0 species 0 1 80866 Delftia acidovorans 436 1 4 genus 0 1649468 2 268 Melaminivora 0 no rank 2641902 1 264 2109913 1 264 Melaminivora sp. SC2-9 species 0 3 1 genus 0 2 174951 Ramlibacter 594 591 Ramlibacter tataouinensis 94132 1 species 0 genus 0 1 5 2207 Comamonas 283 4 568 Comamonas testosteroni 285 1 species 0 1082851 1 1004 Comamonas serinivorans species 0 species 0 630 Comamonas kerstersii 225992 1 1 364316 742 genus 0 364317 1 742 Verminephrobacter eiseniae 0 species 2 201096 Alicycliphilus 310 1 1 0 genus 0 species 1 179636 Alicycliphilus denitrificans 309 0 no rank 506 80841 2 1 1834205 Burkholderiales bacterium YL45 338 0 species 0 species Burkholderiales bacterium GJ-E10 168 1 1469502 family 0 1 68 9260 Oxalobacteraceae 75682 29 1870 Massilia 149698 6 genus 0 1 59 species 0 Massilia sp. B2 316 1 2045208 0 species 415 Massilia sp. ZMN-3 2072590 1 716 2609279 2 no rank 0 0 species Massilia sp. WG5 428 1 1707785 0 species 288 Massilia sp. NR 4-1 1678028 1 1 1141883 Massilia putida 364 0 species 1 1 0 genus 846 2 150 Oxalobacter species 0 847 1 149 Oxalobacter formigenes 1 52 genus 0 29580 7 2089 Janthinobacterium species 0 55508 1 278 Janthinobacterium agaricidamnosum Janthinobacterium svalbardensis 479 1 368607 species 0 no rank 0 1280 4 2610881 0 species 375286 1 201 Janthinobacterium sp. Marseille species 0 1 1644131 Janthinobacterium sp. 1_2014MBL_MicDiv 373 1 1236179 Janthinobacterium sp. B9-8 408 0 species 0 species 1 1938606 Janthinobacterium sp. LM6 298 27 1 genus 0 4 202907 Collimonas 1424 0 species 279058 1 621 Collimonas arenae species 0 Collimonas pratensis 406 1 279113 370 Collimonas fungivorans 158899 1 species 0 6 963 Herbaspirillum 3154 26 1 0 genus Herbaspirillum frisingense 358 1 92645 0 species 0 species 1 80842 Herbaspirillum rubrisubalbicans 346 0 no rank 2624150 1 354 0 species 1 2025949 Herbaspirillum sp. meg3 354 341045 1 1344 Herbaspirillum hiltneri 0 species 0 species Herbaspirillum seropedicae 726 1 964 0 genus 2 1 Herminiimonas 505 3 303379 species 0 240 Herminiimonas arsenicoxydans 204773 1 species 0 1 1809410 Herminiimonas arsenitoxidans 263 13918 Alcaligenaceae 506 42 family 0 1 51 1 5 0 genus 1100891 2 372 Paenalcaligenes 0 species 1 643674 Paenalcaligenes hominis 367 0 genus 1 71 3117 Achromobacter 222 6 217203 1 563 Achromobacter spanius 0 species 0 species Achromobacter insolitus 326 1 217204 1 2626865 337 0 no rank 0 species Achromobacter sp. AONIH1 337 1 1758194 species 0 600 Achromobacter denitrificans 32002 1 85698 1 1220 Achromobacter xylosoxidans 0 species 6 1 0 genus 3 290425 Advenella 565 0 species 310575 1 253 Advenella kashmirensis Advenella mimigardefordensis 306 1 302406 species 0 2020 Alcaligenes 507 2 genus 0 1 9 1 511 Alcaligenes faecalis 2011 species 0 1 1 genus 0 305976 2 434 Pusillimonas 1 2640016 433 no rank 0 1 1007105 Pusillimonas sp. T7-7 433 species 0 3 29574 Taylorella 1310 2 1 genus 0 0 species 1 29575 Taylorella equigenitalis 669 639 Taylorella asinigenitalis 84590 1 0 species 2 1921582 Orrella 231 4 1 0 genus species 0 1851544 1 227 Orrella dioscoreae genus 0 479 1472344 1 1 1472345 Basilea psittacipulmonis 479 0 species Bordetella 4814 17 517 0 genus 97 1 1 520 Bordetella pertussis 494 species 0 1 94624 Bordetella petrii 268 0 species Bordetella genomosp. 13 286 1 463040 species 0 species 0 Bordetella genomosp. 9 260 1 1416803 Bordetella genomosp. 8 284 1 1416806 species 0 0 species Bordetella avium 150 1 521 207 Bordetella trematum 123899 1 0 species 164 Bordetella holmesii 35814 1 species 0 1 463025 Bordetella bronchialis 313 0 species 0 species 463014 1 283 Bordetella flabilis 518 1 630 Bordetella bronchiseptica 0 species species 0 Bordetella parapertussis 357 1 519 219 2630031 1 0 no rank 1 1697043 Bordetella sp. H567 219 species 0 species 0 463024 1 321 Bordetella genomosp. 6 248 Bordetella hinzii 103855 1 0 species 1 1331258 Bordetella pseudohinzii 233 0 species 0 genus 319 90243 1 0 species 1 90245 Oligella urethralis 319 0 genus 2 1 Castellaniella 206 2 359336 Castellaniella defragrans 204 1 75697 species 0 Rhodocyclales 3607 22 206389 0 order 33 1 35 1 family 0 12 2008794 Zoogloeaceae 2541 1 16 0 genus 12960 5 1174 Azoarcus 2629479 2 653 no rank 0 0 species 1 198107 Azoarcus sp. CIB 394 0 species 748247 1 259 Azoarcus sp. KH32C 0 species Azoarcus olearius 255 1 418699 1 2067960 Azoarcus sp. SY39 250 species 0 1 31 genus 0 33057 6 1332 Thauera 1 59405 Thauera aromatica 236 0 species 2 2609274 579 no rank 0 0 species 1 85643 Thauera sp. MZ1T 312 0 species 267 Thauera sp. K11 2005884 1 1134435 1 252 Thauera humireducens 0 species Thauera chlorobenzoica 234 1 96773 0 species 3 1 family 0 3 2008795 Azonexaceae 354 genus 0 3 1 Dechloromonas 351 2 73029 0 species 348 Dechloromonas aromatica 259537 1 0 family 13 1 Rhodocyclaceae 679 6 75787 551759 2 223 Aromatoleum 1 7 0 genus 216 Aromatoleum aromaticum 551760 1 0 species 75788 1 180 no rank 0 1898103 1 180 Rhodocyclaceae bacterium species 0 3 1 genus 0 2 146937 Azospira 263 species 0 260 Azospira oryzae 146939 1 0 class 4 1 Oligoflexia 2953 12 1553900 2024979 6 1640 Bacteriovoracales 1 4 0 order 1116 Halobacteriovoraceae 1652132 3 0 family 1 2 0 genus 3 1 Halobacteriovorax 1114 2 1652133 1 97084 Halobacteriovorax marinus 1111 0 species family 0 520 2 263369 1 2 genus 0 146784 2 520 Bacteriovorax species 0 518 Bacteriovorax stolpii 960 1 1309 Bdellovibrionales 213481 5 0 order 1 8 1 7 0 family 213483 4 1301 Bdellovibrionaceae 958 3 1294 Bdellovibrio 1 3 genus 0 1 453816 Bdellovibrio exovorus 433 0 species Bdellovibrio bacteriovorus 858 1 959 species 0 68525 194 92703 subphylum 0 class 0 1 37 56304 Epsilonproteobacteria 29547 70 1 80 0 order 213849 64 53644 Campylobacterales 2771472 4 1311 0 family genus 0 269260 1 592 592 Nitratifractor salsuginis 269261 1 species 0 0 genus 1 9 719 Sulfurovum 265570 3 Sulfurovum lithotrophicum 351 1 206403 species 0 no rank 0 2646778 1 359 0 species 359 Sulfurovum sp. NBC37-1 387093 1 family 0 1 2 9771 Helicobacteraceae 72293 14 12 209 Helicobacter 9596 21 1 0 genus 1 1591088 Helicobacter himalayensis 278 species 0 0 species 312 Helicobacter cinaedi 213 1 species 0 Helicobacter cetorum 747 1 138563 1 32025 Helicobacter hepaticus 513 species 0 Helicobacter felis 135 1 214 0 species species 0 1 212 Helicobacter acinonychis 243 0 species 325 Helicobacter typhlonius 76936 1 0 species 292 Helicobacter mustelae 217 1 0 species 210 1 6097 Helicobacter pylori 1 37372 Helicobacter bilis 403 species 0 1 2593540 230 0 no rank species 0 Helicobacter sp. MIT 01-6242 230 1 222136 173 1 843 genus 0 0 species Wolinella succinogenes 173 1 844 40939 Campylobacteraceae 72294 41 0 family 1 60 1 27 0 genus 57665 9 2966 Sulfurospirillum 44674 1 471 Sulfurospirillum barnesii 0 species 66821 1 280 Sulfurospirillum multivorans species 0 402 Sulfurospirillum deleyianum 65553 1 0 species 0 no rank 1332 3 2618290 0 species 1 220622 Sulfurospirillum sp. JPD-1 400 0 species 435 Sulfurospirillum sp. SL2-1 1986224 1 species 0 497 Sulfurospirillum sp. UCH001 1581011 1 0 species 1 194424 Sulfurospirillum halorespirans 273 species 0 181 Sulfurospirillum cavolei 366522 1 11204 5 2321108 0 no rank 3 28196 Arcobacter 5803 58 1 genus 0 0 species 3440 Arcobacter butzleri 28197 1 Arcobacter nitrofigilis 2305 1 28199 0 species no rank 0 2816 1 2321207 1 944547 Arcobacter sp. L 2816 0 species 0 genus 2585 1 2321187 2585 Arcobacter sp. LPB0137 1850254 1 0 species 194 26 26709 Campylobacter 1 178 0 genus 1 1244531 Campylobacter iguaniorum 639 0 species 0 species Campylobacter volucris 1152 1 1031542 0 species 680 Campylobacter concisus 199 1 species 0 28898 1 507 Campylobacter helveticus species 0 1 197 Campylobacter jejuni 2341 species 0 76517 1 645 Campylobacter hominis 1607 Campylobacter pinnipediorum 1965231 1 species 0 1064 Campylobacter peloridis 488546 1 0 species 1 497724 Campylobacter subantarcticus 1042 species 0 species 0 2935 Campylobacter lari 201 1 1 827 Campylobacter ureolyticus 1369 species 0 species 0 200 1 192 Campylobacter curvus species 0 1 75658 Campylobacter lanienae 474 species 0 1 198 Campylobacter hyointestinalis 779 species 0 881 Campylobacter cuniculorum 374106 1 206 1 1754 Campylobacter sputorum species 0 Campylobacter avium 811 1 522485 species 0 1 260714 Campylobacter insulaenigrae 1217 species 0 0 species Campylobacter coli 1755 1 195 species 0 Campylobacter fetus 1170 1 196 0 species Campylobacter gracilis 138 1 824 3379 4 2593542 0 no rank Campylobacter sp. RM12175 689 1 1660076 0 species species 0 770 Campylobacter sp. RM8964 1660074 1 0 species Campylobacter sp. RM6137 532 1 1660073 species 0 1 1500960 Campylobacter sp. RM16704 1388 family 0 2771471 4 1543 genus 0 158 1 286130 148813 1 158 Sulfuricurvum kujiense species 0 1 1 genus 0 202746 3 1385 Sulfurimonas 0 species 612 Sulfurimonas autotrophica 202747 1 Sulfurimonas denitrificans 772 1 39766 0 species order 0 6 1 Nautiliales 2623 5 235899 2191 2 224467 family 0 191291 2 2191 Nautilia 1 5 genus 0 0 species 2186 Nautilia profundicola 244787 1 family 0 426 2 2795691 genus 0 1 8 426 Nitratiruptor 269258 2 0 no rank 418 2624044 1 0 species Nitratiruptor sp. SB155-2 418 1 387092 class 0 46 1 Deltaproteobacteria 36399 124 28221 192 1 0 order 37 29 Myxococcales 17266 suborder 0 9405 25 80811 Anaeromyxobacteraceae 1486 5 1524215 0 family 11 1 1475 Anaeromyxobacter 161492 4 0 genus 1 14 0 no rank 853 2620896 2 species 0 Anaeromyxobacter sp. Fw109-5 504 1 404589 447217 1 349 Anaeromyxobacter sp. K species 0 608 Anaeromyxobacter dehalogenans 161493 1 species 0 family 0 1 34 3755 Archangiaceae 39 9 4 1 genus 0 2 44 Melittangium 529 83453 1 525 Melittangium boletus species 0 0 genus 3 1 Cystobacter 645 2 42 species 0 Cystobacter fuscus 642 1 43 1 2 0 genus 47 2 2085 Archangium species 0 2083 Archangium gephyra 48 1 2 1 0 genus 2 40 Stigmatella 462 41 1 460 Stigmatella aurantiaca 0 species 1 17 0 family 31 9 3800 Myxococcaceae 1114 Corallococcus 83461 3 0 genus 1 22 0 species Corallococcus coralloides 620 1 184914 472 Myxococcus macrosporus 35 1 species 0 1 78 0 genus 32 5 2669 Myxococcus 0 species 414 Myxococcus xanthus 34 1 species 0 545 Myxococcus hansupus 1297742 1 1 83455 Myxococcus stipitatus 572 species 0 0 species 1060 Myxococcus fulvus 33 1 0 family 1524213 2 364 Vulgatibacter 364 2 1524214 genus 0 1 1 0 species 1391653 1 363 Vulgatibacter incomptus 0 suborder 1507 3 224462 1 10 family 0 224464 3 1507 Kofleriaceae 19 1 genus 0 2 162027 Haliangium 1497 1 80816 Haliangium ochraceum 1478 0 species suborder 0 6162 8 80812 4 1 0 family 3 1055686 Sandaracinaceae 791 1 6 genus 0 1055688 2 787 Sandaracinus 781 Sandaracinus amylolyticus 927083 1 0 species 0 family 12 1 Polyangiaceae 5371 5 49 Chondromyces 843 2 50 genus 0 1 1 species 0 52 1 842 Chondromyces crocatus 39643 2 4516 Sorangium 1 10 genus 0 species 0 56 1 4506 Sorangium cellulosum 0 order 2 1 Desulfarculales 252 4 453227 453228 3 250 Desulfarculaceae 1 5 0 family Desulfarculus 245 2 453229 0 genus 6 1 239 Desulfarculus baarsii 453230 1 species 0 5 213113 Desulfurellales 1439 11 1 order 0 1428 Desulfurellaceae 117942 4 family 0 1 3 Desulfurella 985 2 33001 0 genus 1 1 33002 1 984 Desulfurella acetivorans species 0 0 genus 84404 1 440 0 species 1 84405 Hippea maritima 440 1 4 0 order 213462 10 924 Syntrophobacterales 0 family 9 1 Syntrophaceae 567 6 213468 0 genus 1 1 234 Desulfomonile 2357 2 Desulfomonile tiedjei 233 1 2358 species 0 genus 0 1 43773 149 316277 1 149 Syntrophus aciditrophicus 0 species 4 1 0 genus 2 60892 Desulfobacca 175 60893 1 171 Desulfobacca acetoxidans 0 species 1 3 0 family 213465 3 353 Syntrophobacteraceae 350 Syntrophobacter 29526 2 0 genus 1 8 species 0 Syntrophobacter fumaroxidans 342 1 119484 34 1 0 order 24 69541 Desulfuromonadales 6128 family 0 1 6 1840 Desulfuromonadaceae 213421 9 792 Pelobacter 18 5 genus 0 1 19 1 19 Pelobacter carbinolicus 181 0 species 2620299 1 186 no rank 0 0 species Pelobacter sp. SFB93 186 1 1842532 201 Pelobacter acetylenicus 29542 1 species 0 1 29543 Pelobacter propionicus 205 0 species 4 1 0 genus 3 890 Desulfuromonas 1042 1 1603606 Desulfuromonas soudanensis 743 0 species 0 no rank 1 2614637 295 0 species 1 1823759 Desulfuromonas sp. DDH964 295 1 12 0 family 213422 14 4254 Geobacteraceae 0 genus 42 1 Geobacter 3977 11 28231 species 0 1 35554 Geobacter sulfurreducens 167 species 0 Geobacter pickeringii 207 1 345632 1 351604 Geobacter uraniireducens 1208 0 species 0 species 1203471 1 260 Geobacter daltonii 2627627 2 900 no rank 0 0 species Geobacter sp. M21 236 1 443144 0 species Geobacter sp. M18 664 1 443143 0 species 1 28232 Geobacter metallireducens 589 293 Geobacter bemidjiensis 225194 1 species 0 164 Geobacter lovleyi 313985 1 0 species 0 species 1340425 1 147 Geobacter anodireducens genus 0 14 1 Geoalkalibacter 265 2 392332 species 0 483547 1 251 Geoalkalibacter subterraneus order 0 26 1 Desulfobacterales 5685 18 213118 Desulfobacteraceae 4396 9 213119 family 0 18 1 1 14 genus 0 218207 2 1789 Desulfatibacillum 259354 1 1775 Desulfatibacillum alkenivorans 0 species genus 0 1490 1 28222 0 species 28223 1 1490 Desulfobacula toluolica Desulfococcus 823 3 896 genus 0 2 1 species 0 1 897 Desulfococcus multivorans 268 species 0 181663 1 553 Desulfococcus oleovorans genus 0 1 5 276 Desulfobacterium 2295 2 species 0 271 Desulfobacterium autotrophicum 2296 1 1263 Desulfobulbaceae 213121 8 family 0 1 12 0 genus 205 1 427922 Desulfurivibrio alkaliphilus 205 1 427923 species 0 109168 2 428 Desulfotalea 1 8 genus 0 species 0 Desulfotalea psychrophila 420 1 84980 1 1 0 genus 893 2 164 Desulfobulbus Desulfobulbus sp. ORNL 163 1 1986146 0 species 0 genus 1 2 454 Desulfocapsa 53318 2 species 0 1 65555 Desulfocapsa sulfexigens 452 42 1 order 0 25 213115 Desulfovibrionales 4659 family 0 1 1 Desulfohalobiaceae 140 2 213117 45662 1 139 0 genus 0 species Desulfohalobium retbaense 139 1 45663 1 28 family 0 194924 18 4212 Desulfovibrionaceae 4 2035811 Pseudodesulfovibrio 625 4 1 0 genus 182210 1 272 Pseudodesulfovibrio aespoeensis species 0 Pseudodesulfovibrio profundus 156 1 57320 species 0 Pseudodesulfovibrio indicus 193 1 1716143 0 species genus 0 2582840 1 188 873 1 188 Desulfovibrio africanus species 0 2794998 1 313 genus 0 313 Desulfovibrio salexigens 880 1 0 species 18 1 0 genus 9 872 Desulfovibrio 2083 64 Candidatus Desulfovibrio trichonymphae 1725232 1 0 species 0 species 1 58180 Desulfovibrio alaskensis 155 0 species 688 Desulfovibrio vulgaris 881 1 122 1 2593640 0 no rank Desulfovibrio sp. G11 122 1 631220 0 species Desulfovibrio magneticus 453 1 184917 species 0 0 species 122 Desulfovibrio fairfieldensis 44742 1 901 1 114 Desulfovibrio piger 0 species 347 Desulfovibrio desulfuricans 876 1 0 species Lawsonia 975 2 41707 0 genus 4 1 species 0 29546 1 971 Lawsonia intracellularis 4 213116 Desulfomicrobiaceae 265 1 1 family 0 1 3 0 genus 898 3 264 Desulfomicrobium 0 species 1 899 Desulfomicrobium baculatum 161 Desulfomicrobium orale 100 1 132132 species 0 211 2138240 2 0 phylum 1 1 class 0 2 2138243 Coprothermobacteria 211 2138246 1 210 0 order 210 2138247 1 0 family genus 0 1 68335 210 Coprothermobacter proteolyticus 210 1 35786 0 species 20 57723 2349 0 phylum 5 1 0 class 3 1562566 Blastocatellia 208 2 458032 Chloracidobacterium 203 2 1 0 genus species 0 Chloracidobacterium thermophilum 201 1 458033 1 15 class 0 204432 17 2141 Acidobacteriia Acidobacteriales 1785 12 204433 0 order 13 1 14 1 family 0 11 204434 Acidobacteriaceae 1772 205 Candidatus Koribacter 658061 2 0 genus 1 2 658062 1 203 Candidatus Koribacter versatilis species 0 450 Acidobacterium 33973 2 genus 0 1 1 0 species 449 Acidobacterium capsulatum 33075 1 1 7 0 genus 940557 3 593 Granulicella Granulicella tundricola 386 1 940615 species 0 species 0 200 Granulicella mallensis 940614 1 3 392733 Terriglobus 510 3 1 0 genus 204 Terriglobus roseus 392734 1 0 species 870903 1 303 Terriglobus saanensis 0 species 4 332160 Solibacterales 341 3 1 0 order 3 1 family 0 3 332161 Solibacteraceae 338 335 Candidatus Solibacter 332162 2 genus 0 1 11 species 0 324 Candidatus Solibacter usitatus 332163 1 10845 42 200918 phylum 0 Thermotogae 10845 42 188708 class 0 19 1 Thermotogales 6379 28 2419 0 order 16 1 1643950 10 4266 Fervidobacteriaceae 1 5 0 family 1192 Fervidobacterium 2422 4 0 genus 1 11 1 2423 Fervidobacterium islandicum 236 0 species species 0 Fervidobacterium pennivorans 422 1 93466 Fervidobacterium nodosum 523 1 2424 0 species 0 genus 26 1 Thermosipho 3069 5 2420 no rank 0 1320 2676525 2 1462747 1 627 Thermosipho sp. 1063 species 0 1 1437364 Thermosipho sp. 1070 693 species 0 936 Thermosipho africanus 2421 1 0 species species 0 1 46541 Thermosipho melanesiensis 787 188709 17 2097 Thermotogaceae 1 3 family 0 1111 Thermotoga 2335 11 0 genus 1 32 Thermotoga naphthophila 94 1 93930 0 species 69 Thermotoga caldifontis 1508419 1 species 0 302 2631113 4 0 no rank Thermotoga sp. Cell2 76 1 1157947 species 0 1157948 1 69 Thermotoga sp. 2812B species 0 species 0 126740 1 81 Thermotoga sp. RQ2 species 0 Thermotoga sp. RQ7 76 1 126738 Thermotoga profunda 320 1 1508420 species 0 88 Thermotoga petrophila 93929 1 species 0 0 species 2336 1 119 Thermotoga maritima 0 species 1 2337 Thermotoga neapolitana 87 983 Pseudothermotoga 1643951 5 genus 0 1 19 119394 1 240 Pseudothermotoga thermarum 0 species 57487 1 63 Pseudothermotoga hypogea 0 species species 0 330 Pseudothermotoga lettingae 177758 1 Pseudothermotoga elfii 331 1 38322 0 species 1 4 0 order 1643947 7 3707 Petrotogales 0 family 1643949 6 3703 571 1 28236 genus 0 0 species Petrotoga mobilis 571 1 69499 Marinitoga 2182 3 160798 genus 0 10 1 1055 2640159 1 no rank 0 1 1545835 Marinitoga sp. 1137 1055 0 species species 0 1 149715 Marinitoga piezophila 1117 genus 0 1 1 950 Defluviitoga 1511648 2 1 1006576 Defluviitoga tunisiensis 949 species 0 Kosmotogales 740 6 1643946 order 0 2 1 family 0 1 1 Kosmotogaceae 738 5 1643948 1184396 1 168 0 genus 0 species 1184387 1 168 Mesotoga prima Kosmotoga 569 3 651456 genus 0 1 1 221 Kosmotoga olearia 651457 1 0 species 0 species 1 1330330 Kosmotoga pacifica 347 clade 0 1783270 367 228165 225550 68336 355 0 clade 3526 21 1090 0 phylum 191410 21 3526 Chlorobia 1 40 0 class 0 order 26 1 Chlorobiales 3486 20 191411 3460 Chlorobiaceae 191412 19 family 0 1 22 386 1 100715 genus 0 Chloroherpeton thalassium 386 1 100716 species 0 0 genus 43 1 Prosthecochloris 712 5 1101 species 0 1102 1 160 Prosthecochloris aestuarii 3 2632826 509 0 no rank 187 Prosthecochloris sp. CIB 2401 1868325 1 species 0 122 Prosthecochloris sp. GSB1 281093 1 0 species 0 species 1974213 1 200 Prosthecochloris sp. HL-130-GSB 0 no rank 1936 8 274493 genus 0 1 39 1589 Chlorobium 1091 5 0 species 1096 1 721 Chlorobium phaeobacteroides 0 species Chlorobium chlorochromatii 279 1 337090 0 species 1092 1 432 Chlorobium limicola 1 1094 Chlorobium phaeovibrioides 118 0 species 1099 3 347 Pelodictyon 1 2 genus 0 104 Pelodictyon luteolum 1100 1 species 0 species 0 Pelodictyon phaeoclathratiforme 241 1 34090 404 Chlorobaculum 256319 4 genus 0 1 49 species 0 Chlorobaculum tepidum 87 1 1097 0 species Chlorobaculum parvum 127 1 274539 141 Chlorobaculum limnaeum 274537 1 species 0 Bacteroidetes 220228 327 976 0 phylum 24 1 143 117743 Flavobacteriia 152491 93 1 class 0 1 171 order 0 200644 142 152398 Flavobacteriales 1755828 3 752 Ichthyobacteriaceae 1 4 0 family 1755829 2 748 Ichthyobacterium 1 21 0 genus 0 species 727 Ichthyobacterium seriolicida 242600 1 851 2 1333713 0 family 1 18 0 genus 267986 2 851 Owenweeksia 253245 1 833 Owenweeksia hongkongensis 0 species no rank 0 3 313602 1762 1 1940138 329 0 genus 329 Candidatus Walczuchella monophlebidarum 1415657 1 0 species 10 1 genus 0 2 336809 Candidatus Sulcia 1433 species 0 1 336810 Candidatus Sulcia muelleri 1423 246874 1 19 Cryomorphaceae family 0 family 0 17990 2762318 19 598 1 1013 0 genus species 0 1014 1 598 Weeksella virosa 1330 34084 1 0 genus species 0 34085 1 1330 Riemerella anatipestifer genus 0 39 1 Elizabethkingia 6432 6 308865 Elizabethkingia genomosp. 4 855 1 1756150 0 species 0 species 970 Elizabethkingia meningoseptica 238 1 1 1756149 Elizabethkingia genomosp. 3 1060 0 species species 0 2161 Elizabethkingia anophelis 1117645 1 172045 1 1347 Elizabethkingia miricola species 0 1 28250 650 genus 0 0 species 1 28251 Ornithobacterium rhinotracheale 650 8980 10 2782232 no rank 0 1 2782228 492 genus 0 species 0 536441 1 492 Chryseobacterium taklimakanense genus 0 37 1 Chryseobacterium 8488 9 59732 1 558152 Chryseobacterium piperi 960 species 0 no rank 0 2880 2593645 3 species 0 2015076 1 1033 Chryseobacterium sp. T16E-39 0 species 1 1721091 Chryseobacterium sp. IHB B 17019 866 species 0 981 Chryseobacterium sp. StRB126 878220 1 0 species Chryseobacterium gallinarum 748 1 1324352 1 1685010 Chryseobacterium glaciei 1890 species 0 0 species Chryseobacterium camelliae 305 1 1265445 1 253 Chryseobacterium indologenes 1668 species 0 49546 101 123950 Flavobacteriaceae 1 567 0 family 1 389486 811 genus 0 811 1 2648869 no rank 0 1 1453352 Sediminicola sp. YIK13 811 0 species genus 0 1 88 3878 Myroides 76831 5 2642485 2 1823 0 no rank 1 1458492 Myroides sp. ZB35 934 species 0 species 0 1 1583100 Myroides sp. A21 889 0 species Myroides odoratimimus 950 1 76832 species 0 1017 Myroides profundi 480520 1 1200 1 153265 0 genus 101385 1 1200 Aequorivita sublithincola species 0 178469 1 1067 0 genus Arenibacter algicola 1067 1 616991 species 0 genus 0 393005 1 1436 species 0 Tamlana sp. UJ94 1436 1 2069432 1 1 0 genus 112040 2 609 Zobellia species 0 1 63186 Zobellia galactanivorans 608 0 genus 1297 1 143222 0 no rank 1 2633436 1297 1 1729720 Salegentibacter sp. T436 1297 0 species 0 genus 2141 1 1649495 2622645 1 2141 no rank 0 2141 Seonamhaeicola sp. S2-3 1936081 1 species 0 1 83612 1592 0 genus species 0 1592 Psychroflexus torquis 57029 1 genus 0 16 1 Tenacibaculum 10057 5 104267 Tenacibaculum jejuense 3368 1 584609 0 species 2141 Tenacibaculum maritimum 107401 1 0 species 0 species Tenacibaculum dicentrarchi 2024 1 669041 Tenacibaculum todarodis 2508 1 1850252 0 species Maribacter 5692 5 252356 0 genus 35 1 Maribacter cobaltidurans 789 1 1178778 0 species 0 no rank 2615042 3 4868 1638 Maribacter sp. T28 1836467 1 0 species Maribacter sp. 1_2014MBL_MicDiv 2049 1 1644130 species 0 species 0 1 313603 Maribacter sp. HTCC2170 1181 genus 0 2700084 1 2658 0 species 2658 Lutibacter sp. LPB0138 1850246 1 1 216431 1743 genus 0 0 species 1743 Croceibacter atlanticus 313588 1 2203 61432 2 no rank 0 0 species 1150389 1 1790 Flavobacteriaceae bacterium UJ101 0 species 1 531844 Flavobacteriaceae bacterium 3519-10 413 0 genus 2325 261827 1 1 1736674 Algibacter alginicilyticus 2325 0 species 5 363408 Nonlabens 4905 108 1 genus 0 0 species Nonlabens dokdonensis 1248 1 328515 no rank 0 2317 2 2615035 1 2058134 Nonlabens sp. MB-3u-79 1119 species 0 species 0 1198 Nonlabens sp. MIC269 1476901 1 species 0 1 319236 Nonlabens sediminis 1232 0 genus 97 1 Capnocytophaga 8650 15 1016 1018 1 474 Capnocytophaga ochracea 0 species 1 327575 Capnocytophaga leadbetteri 488 0 species species 0 Capnocytophaga gingivalis 394 1 1017 no rank 0 2640652 6 3259 0 species 670 Capnocytophaga sp. H4358 1945658 1 0 species 1 1316593 Capnocytophaga sp. oral taxon 864 468 Capnocytophaga sp. oral taxon 323 417 1 1705617 species 0 0 species 589 Capnocytophaga sp. H2931 1945657 1 209053 1 463 Capnocytophaga sp. ChDC OS43 species 0 1316596 1 652 Capnocytophaga sp. oral taxon 878 0 species species 0 28188 1 894 Capnocytophaga canimorsus Capnocytophaga sputigena 1243 1 1019 0 species Capnocytophaga cynodegmi 830 1 28189 species 0 1 1848904 Capnocytophaga stomatis 561 species 0 species 0 45243 1 410 Capnocytophaga haemolytica 3 225842 Formosa 3714 10 1 genus 0 3704 2644710 2 0 no rank 1 1336794 Formosa sp. Hel1_33_131 1453 species 0 Formosa sp. Hel3_A1_48 2251 1 1336795 0 species 1826 1 1209327 genus 0 species 0 1 1803846 Flavivirga eckloniae 1826 Flavobacterium 13974 9 237 0 genus 33 1 0 species 1306519 1 1138 Flavobacterium commune 1945 Flavobacterium indicum 312277 1 0 species species 0 996 1 2785 Flavobacterium columnare Flavobacterium johnsoniae 3313 1 986 0 species 0 species Flavobacterium crassostreae 900 1 1763534 species 0 1 55197 Flavobacterium branchiophilum 1305 96345 1 1301 Flavobacterium psychrophilum 0 species 0 species Flavobacterium gilvum 1254 1 1492737 2074 1 417127 genus 0 species 0 Zunongwangia profunda 2074 1 398743 0 genus 1204360 1 2184 Siansivirga zeaxanthinifaciens 2184 1 762954 0 species 326319 4 3756 Dokdonia 1 34 0 genus 2 2615033 2336 no rank 0 Dokdonia sp. 4H-3-7-5 1198 1 983548 0 species 0 species 313590 1 1138 Dokdonia sp. MED134 0 species 1 326320 Dokdonia donghaensis 1386 6716 Lacinutrix 291183 4 genus 0 1 59 2 2647285 4491 0 no rank 983544 1 2219 Lacinutrix sp. 5H-3-7-4 0 species 0 species 2057808 1 2272 Lacinutrix sp. Bg11-31 0 species 1 1486034 Lacinutrix venerupis 2166 52959 6 13482 Polaribacter 1 105 0 genus 196858 3 7231 no rank 0 2419 Polaribacter sp. MED152 313598 1 species 0 1529069 1 2620 Polaribacter sp. BM10 0 species 0 species Polaribacter sp. ALD11 2192 1 2058137 0 species Polaribacter reichenbachii 3133 1 996801 0 species 1774273 1 3013 Polaribacter vadi genus 0 1 19 3648 Gramella 292691 5 0 species 1486245 1 682 Gramella flava 930 Gramella sp. SH35 2126553 1 0 species species 0 411153 1 1145 Gramella forsetii species 0 872 Gramella sp. LPB0144 1913577 1 genus 0 2 1 Wenyingzhuangia 2011 2 1518147 0 species 1 1790137 Wenyingzhuangia fucanilytica 2009 21 1 0 genus 4 104264 Cellulophaga 6406 1 59600 Cellulophaga algicola 2036 0 species species 0 Cellulophaga baltica 2058 1 76594 0 species 979 1 2291 Cellulophaga lytica genus 0 248 1 252306 1 252307 Robiginitalea biformata 248 0 species Lutibacter 2612 2 358023 0 genus 3 1 species 0 Lutibacter profundi 2609 1 1622118 genus 0 1 336276 1775 1775 1 2615019 0 no rank species 0 2058135 1 1775 Olleya sp. Bg11-27 0 genus 1176327 1 964 0 no rank 964 1 2636237 0 species 1 2094025 Aureitalea sp. RR4-38 964 3 286104 Winogradskyella 4573 12 1 genus 0 4561 2 2615021 0 no rank species 0 Winogradskyella sp. J14-2 2179 1 1936080 754409 1 2382 Winogradskyella sp. PG-2 0 species 2 1 genus 0 3 111500 Muricauda 1156 516051 1 396 Muricauda lutaonensis species 0 1 111501 Muricauda ruestringensis 758 0 species family 0 1853230 2 1291 2 332102 Fluviicola 1291 7 1 genus 0 species 0 Fluviicola taffensis 1284 1 191579 5612 Blattabacteriaceae 39782 10 family 0 1 3 genus 0 47 1 Blattabacterium 5609 9 34098 species 0 800 Blattabacterium punctulatus 164514 1 807 Blattabacterium cuenoti 1653831 1 0 species 3955 2647581 6 0 no rank species 0 552 Blattabacterium sp. (Blatta orientalis) 367806 1 597 Blattabacterium sp. (Periplaneta americana) 367488 1 0 species 0 species Blattabacterium sp. (Nauphoeta cinerea) 783 1 1316444 814 Blattabacterium sp. (Blaberus giganteus) 1186051 1 0 species 0 species 624186 1 614 Blattabacterium sp. (Blattella germanica) 595 Blattabacterium sp. (Mastotermes darwiniensis) 39768 1 0 species 70 200643 Bacteroidia 16418 29 1 0 class 10 1 order 0 12 1970189 Marinilabiliales 3427 family 0 1 5 626 Salinivirgaceae 1970190 3 2 1970191 Salinivirga 621 2 1 0 genus species 0 1 1307839 Salinivirga cyanobacteriivorans 619 4 1 0 family 3 558415 Marinilabiliaceae 766 1 7 0 genus 1193324 2 762 Alkalitalea 755 Alkalitalea saponilacus 889453 1 species 0 0 family 1 1 Prolixibacteraceae 948 3 1471398 1471399 2 947 Draconibacterium 1 7 0 genus 940 Draconibacterium orientale 1168034 1 species 0 1 1 0 family 1573805 2 1077 Marinifilaceae 0 genus 1076 1 2060722 Marinifilaceae bacterium SPP2 1076 1 1717717 species 0 12962 Bacteroidales 171549 57 order 0 1 54 1 3 family 0 2005525 7 1086 Tannerellaceae Parabacteroides 633 3 375288 0 genus 6 1 0 species 320 Parabacteroides distasonis 823 1 1 2649774 307 no rank 0 1 2025876 Parabacteroides sp. CT06 307 0 species genus 0 4 1 Tannerella 450 3 195950 species 0 28112 1 266 Tannerella forsythia no rank 0 1 2620507 180 0 species 180 Tannerella sp. oral taxon HOT-286 712710 1 4 333046 2498 0 no rank 1 511434 1329 0 genus 1 511435 Candidatus Azobacteroides pseudotrichonymphae 1329 species 0 genus 0 909656 3 1169 species 0 1 821 Bacteroides vulgatus 313 357276 1 294 Bacteroides dorei 0 species 0 species 376805 1 562 Bacteroides salanitronis 221 185291 1 0 no rank 1400053 1 221 Bacteroidales bacterium CF species 0 4 1 0 family 11 171552 Prevotellaceae 2625 10 838 Prevotella 2621 25 1 0 genus 0 species 246 Prevotella melaninogenica 28132 1 0 species Prevotella fusca 215 1 589436 0 species Prevotella enoeca 145 1 76123 species 0 Prevotella denticola 68 1 28129 Prevotella dentalis 202 1 52227 species 0 Prevotella jejuni 259 1 1177574 species 0 species 0 28131 1 807 Prevotella intermedia 327 2638335 1 0 no rank species 0 327 Prevotella sp. oral taxon 299 652716 1 species 0 1 839 Prevotella ruminicola 327 0 family 5 2005520 1155 194 307628 1 0 genus 1 1642646 Petrimonas mucosa 194 0 species 6 1 genus 0 2 294702 Proteiniphilum 346 0 species Proteiniphilum saccharofermentans 340 1 1642647 Fermentimonas 615 2 1784836 genus 0 4 1 1562970 1 611 Fermentimonas caenicola species 0 378 Rikenellaceae 171550 5 family 0 1 3 2 1 0 genus 2 1611681 Mucinivorans 217 1433126 1 215 Mucinivorans hirudinis species 0 239759 2 158 Alistipes 1 1 genus 0 214856 1 157 Alistipes finegoldii 0 species 1853231 3 381 Odoribacteraceae 1 1 0 family 283168 2 380 Odoribacter 1 3 0 genus Odoribacter splanchnicus 377 1 28118 0 species 11 815 Bacteroidaceae 3190 7 1 0 family 3183 Bacteroides 816 10 0 genus 1 28 1 1796613 Bacteroides caecimuris 257 species 0 1 290053 Bacteroides helcogenes 259 species 0 Bacteroides caccae 258 1 47678 0 species Bacteroides thetaiotaomicron 482 1 818 species 0 Bacteroides fragilis 729 1 817 0 species 1 246787 Bacteroides cellulosilyticus 361 0 species species 0 367 Bacteroides ovatus 28116 1 280 Bacteroides heparinolyticus 28113 1 0 species species 0 Bacteroides zoogleoformans 162 1 28119 0 family 1 3 556 Porphyromonadaceae 171551 4 3 1 genus 0 3 836 Porphyromonas 553 0 species 366 Porphyromonas gingivalis 837 1 0 species 28123 1 184 Porphyromonas asaccharolytica 2005519 2 113 0 family 0 genus 5 1 Barnesiella 113 2 397864 0 species 397865 1 108 Barnesiella viscericola 2 1 0 family 3 2005523 Paludibacteraceae 705 346096 2 703 Paludibacter 1 2 0 genus 185300 1 701 Paludibacter propionicigenes 0 species 117747 24 13782 Sphingobacteriia 1 19 0 class 13763 Sphingobacteriales 200666 23 0 order 1 21 84566 22 13742 Sphingobacteriaceae 1 42 family 0 Pseudopedobacter 1030 2 1649482 0 genus 8 1 0 species 151895 1 1022 Pseudopedobacter saltans genus 0 1 33 4484 Pedobacter 84567 6 1 363852 Pedobacter ginsengisoli 1043 species 0 0 species 984 1 915 Pedobacter heparinus no rank 0 761 1 2628915 Pedobacter sp. PACM 27299 761 1 1727164 0 species species 0 704 Pedobacter steynii 430522 1 species 0 1 188932 Pedobacter cryoconitis 1028 genus 0 4 1 Solitalea 896 2 929509 Solitalea canadensis 892 1 995 0 species 1 19 genus 0 423349 4 1881 Mucilaginibacter Mucilaginibacter sp. BJC16-A31 608 1 1234841 species 0 species 0 1 1550579 Mucilaginibacter gotjawali 798 2617802 1 456 0 no rank Mucilaginibacter sp. PAMC 26640 456 1 1300914 0 species 0 no rank 1 84568 1899 0 species 1986952 1 1899 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 6 28453 Sphingobacterium 3510 24 1 genus 0 0 no rank 2799 4 2609468 711 Sphingobacterium sp. G1-14 2003121 1 species 0 1 1933220 Sphingobacterium sp. B29 667 species 0 species 0 743722 1 548 Sphingobacterium sp. 21 species 0 1538644 1 873 Sphingobacterium sp. ML3W 1 1010 Sphingobacterium mizutaii 687 0 species 0 class 2 1 Chitinophagia 4722 16 1853228 Chitinophagales 4720 15 1853229 0 order 28 1 Chitinophagaceae 4692 14 563835 0 family 40 1 Niabella 681 3 379899 0 genus 12 1 0 species 446683 1 307 Niabella soli Niabella ginsenosidivorans 362 1 1176587 0 species 0 genus 760 1 1769012 1 2636138 760 0 no rank 0 species 1 1850526 Arachidicoccus sp. BS20 760 0 genus 1 2 387 Filimonas 649460 2 385 Filimonas lacunae 477680 1 species 0 Niastella 1153 2 354354 genus 0 4 1 Niastella koreensis 1149 1 354356 species 0 0 genus 1 2 822 Chitinophaga 79328 3 0 species 2029983 1 418 Chitinophagaceae bacterium 13 0 species 79329 1 402 Chitinophaga pinensis genus 0 1 3 849 Flavisolibacter 398041 2 species 0 1492898 1 846 Flavisolibacter tropicus 768503 62 30240 Cytophagia 1 43 0 class 0 order 1 106 30197 Cytophagales 768507 61 0 family 1 14 4780 Hymenobacteraceae 1853232 16 19 1 genus 0 3 323449 Pontibacter 703 0 species 1 388950 Pontibacter akesuensis 276 species 0 1 400092 Pontibacter korlensis 408 Hymenobacter 2457 8 89966 genus 0 34 1 342 Hymenobacter swuensis 1446467 1 0 species 0 no rank 5 2615202 1808 0 species 1 1356852 Hymenobacter sp. APR13 253 1 1484116 Hymenobacter sp. PAMC 26554 624 species 0 Hymenobacter sp. DG25B 247 1 1385664 0 species 1 1484118 Hymenobacter sp. PAMC 26628 531 species 0 153 Hymenobacter sp. DG25A 1385663 1 species 0 species 0 Hymenobacter sedentarius 273 1 1411621 genus 0 15 1 Rufibacter 1606 4 1379908 0 no rank 2 2639626 969 1379910 1 587 Rufibacter sp. DG31D 0 species 1 1379909 Rufibacter sp. DG15C 382 species 0 512763 1 622 Rufibacter tibetensis 0 species Persicobacteraceae 1092 3 1853234 0 family 1 1 0 genus 1 7 1091 Persicobacter 59740 2 2664020 1 1084 no rank 0 species 0 1084 Persicobacter sp. JZB09 1085624 1 1501348 5 758 Amoebophilaceae 1 5 family 0 0 genus 1 3 466 Candidatus Amoebophilus 281119 2 species 0 Candidatus Amoebophilus asiaticus 463 1 281120 287 Candidatus Cardinium 273135 2 genus 0 1 2 0 no rank 1 2641185 285 species 0 1 249402 Cardinium endosymbiont of Encarsia pergandiella 285 4 1 0 family 4 200667 Flammeovirgaceae 9080 2275 Flammeovirga 59739 2 genus 0 1 10 0 no rank 1 2637820 2265 1 1191459 Flammeovirga sp. MY04 2265 species 0 340671 1 6801 no rank 0 species 0 1 1257021 Flammeovirgaceae bacterium 311 6801 6757 Cytophagaceae 89373 17 family 0 1 9 319458 2 543 Leadbetterella 1 7 genus 0 0 species 316068 1 536 Leadbetterella byssophila 1 2 genus 0 105 2 2132 Runella 106 1 2130 Runella slithyformis species 0 1 20 0 genus 107 6 2256 Spirosoma 1 1211326 Spirosoma aerolatum 510 species 0 564064 1 216 Spirosoma rigui 0 species species 0 Spirosoma radiotolerans 587 1 1379870 440 Spirosoma montaniterrae 1178516 1 species 0 483 Spirosoma sp. HA7 2057025 1 species 0 Dyadobacter 532 2 120831 0 genus 8 1 1 94254 Dyadobacter fermentans 524 0 species 0 genus 19 1 Cytophaga 1043 2 978 Cytophaga hutchinsonii 1024 1 985 species 0 861914 2 242 Fibrella 1 3 0 genus 1 2620963 239 0 no rank 239 Fibrella sp. ES10-3-2-2 1834519 1 0 species 1875 Bernardetiaceae 1937968 3 0 family 1 3 1872 Bernardetia 1937972 2 0 genus 1 15 species 0 1 999 Bernardetia litoralis 1857 2 2762301 1511 0 family Marivirga 1511 2 869806 genus 0 7 1 species 0 Marivirga tractuosa 1504 1 1006 563798 10 4238 Cyclobacteriaceae 1 9 0 family genus 0 1 16 1848 Cyclobacterium 68288 3 0 species 320787 1 989 Cyclobacterium amurskyense 104 1 843 Cyclobacterium marinum species 0 genus 0 3 1 Algoriphagus 656 2 246875 653 Algoriphagus sp. M8-2 1727163 1 0 species 1 15 genus 0 232244 2 1201 Belliella 1186 Belliella baltica 232259 1 0 species 10 1 0 genus 2 390846 Echinicola 524 species 0 514 Echinicola vietnamensis 390884 1 0 class 1504 1937959 5 4 1 order 0 5 1936988 Saprospirales 1504 0 family 949 1937961 2 Haliscomenobacter 949 2 2349 0 genus 8 1 1 2350 Haliscomenobacter hydrossis 941 0 species 551 2 89374 0 family 1007 2 551 Saprospira 1 5 0 genus species 0 1008 1 546 Saprospira grandis 1047 Bacteroidetes Order II. Incertae sedis 1100069 6 0 order 1 19 5 563843 Rhodothermaceae 1028 8 1 0 family 0 genus 146918 1 265 0 species 146919 1 265 Salinibacter ruber 419 1196022 1 no rank 0 Rhodothermaceae bacterium RA 419 1 1779382 species 0 2 29548 Rhodothermus 336 7 1 0 genus 329 Rhodothermus marinus 29549 1 species 0 1796 1134404 7 phylum 0 7 1 0 class 7 795747 Ignavibacteria 1796 1 8 0 order 795748 6 1789 Ignavibacteriales family 0 6 1 Ignavibacteriaceae 1435 3 795749 795750 2 1429 Ignavibacterium 1 3 genus 0 Ignavibacterium album 1426 1 591197 0 species family 0 2 1334117 346 1 1 genus 0 2 1134403 Melioribacter 346 1 1134405 Melioribacter roseus 345 0 species phylum 0 670 1 456828 456826 1 670 genus 0 0 species 670 Candidatus Cloacimonas acidaminovorans 456827 1 phylum 0 65842 3 789 4 1 0 class 3 204430 Fibrobacteria 789 Fibrobacterales 785 2 218872 0 order 1 1 0 family 784 1 204431 genus 0 784 832 1 species 0 Fibrobacter succinogenes 784 1 833 1156 142182 8 0 phylum Gemmatimonadetes 1156 8 219685 class 0 3 1 order 0 1 9 1153 Gemmatimonadales 219686 7 family 0 1 3 1144 Gemmatimonadaceae 219687 6 1 2 0 genus 173479 3 549 Gemmatimonas species 0 1 173480 Gemmatimonas aurantiaca 283 1379270 1 264 Gemmatimonas phototrophica species 0 Gemmatirosa 592 2 1706036 genus 0 2 1 Gemmatirosa kalamazoonesis 590 1 861299 species 0 300 2157 59488 superkingdom 0 0 clade 1783276 1 62 0 phylum 62 1801631 1 2490204 1 62 genus 0 1920749 1 62 Candidatus Micrarchaeota archaeon Mia14 0 species 49078 Euryarchaeota 28890 231 phylum 0 1 1 2588 21 2283796 clade 0 18 183967 Thermoplasmata 2277 2 1 class 0 0 no rank 95 1 1234666 0 species methanogenic archaeon ISO4-H5 95 1 1495144 order 0 814 1235850 4 663 Methanomassiliicoccaceae 1577788 3 0 family 1 1 534 1080709 1 0 genus species 0 1 1406512 Candidatus Methanomassiliicoccus intestinalis 534 0 genus 1607807 1 128 128 Candidatus Methanoplasma termitum 1577791 1 0 species 0 family 151 2517203 1 genus 0 1 1291539 151 Candidatus Methanomethylophilus alvus 151 1 1291540 species 0 12 2301 1366 0 order 1 1919231 99 no rank 0 Thermoplasmatales archaeon BRNA1 99 1 1054217 0 species 216 3 46659 0 family 216 Thermoplasma 2302 3 genus 0 1 3 species 0 1 2303 Thermoplasma acidophilum 90 123 Thermoplasma volcanium 50339 1 0 species 46630 2 199 0 family genus 0 1 1 199 Picrophilus 46631 2 Picrophilus torridus 198 1 82076 species 0 0 family 489 90142 3 74968 3 489 Ferroplasma 1 4 genus 0 0 species 1 74969 Ferroplasma acidiphilum 240 species 0 Ferroplasma acidarmanus 245 1 97393 Cuniculiplasmataceae 363 3 1747776 family 0 6 1 2 1747777 Cuniculiplasma 357 13 1 genus 0 0 species 1 1673428 Cuniculiplasma divulgatum 344 3 1803510 311 clade 0 1 4 0 genus 379546 3 311 Aciduliprofundum no rank 0 2633939 1 130 0 species 1 673860 Aciduliprofundum sp. MAR08-339 130 species 0 379547 1 177 Aciduliprofundum boonei 27918 2290931 111 0 clade 183963 61 17001 Halobacteria 1 30 class 0 30 1 order 0 17 1644060 Natrialbales 8217 1644061 16 8187 Natrialbaceae 1 20 0 family 1 353799 112 0 genus 112 Halostagnicola larsenii 353800 1 species 0 387342 1 256 genus 0 species 0 1 387343 Halopiger xanaduensis 256 0 genus 1 1 124 Salinarchaeum 1269201 2 1 2621923 123 0 no rank 1 1333523 Salinarchaeum sp. Harcht-Bsk1 123 species 0 308 88723 2 genus 0 species 0 1 69525 Natrinema pellirubrum 185 2622230 1 123 no rank 0 0 species 1 406552 Natrinema sp. J7-2 123 2256 1 206 0 genus 0 species Natronobacterium gregoryi 206 1 44930 5489 1 63742 0 genus 13769 1 5489 Natrialba magadii 0 species 0 genus 1 1 570 Halobiforma 203193 2 0 species 569 Halobiforma lacisalsi 229731 1 1 1 0 genus 3 121871 Haloterrigena 901 1 62320 Haloterrigena turkmenica 247 species 0 1 588898 Haloterrigena daqingensis 653 0 species 1 1 genus 0 2 29287 Natronococcus 201 0 species Natronococcus occultus 200 1 29288 order 0 95 1 Haloferacales 6799 18 1644055 1 2678336 236 0 no rank 756883 1 236 halophilic archaeon DL31 species 0 Halorubraceae 886 8 1963271 0 family 5 1 2 1644057 Salinigranum 407 1 1 genus 0 0 species 1 755307 Salinigranum rubrum 406 0 genus 3 1 Halopenitus 170 2 1209988 species 0 1048396 1 167 Halopenitus persicus 1 1 0 genus 3 56688 Halorubrum 304 species 0 174 Halorubrum trapanicum 29284 1 species 0 1 2247 Halorubrum lacusprofundi 129 family 0 20 1 Haloferacaceae 5582 8 1644056 0 genus 1 60846 119 species 0 Halogeometricum borinquense 119 1 60847 2 293431 Haloquadratum 4494 2 1 0 genus 1 293091 Haloquadratum walsbyi 4492 species 0 genus 0 7 1 Haloferax 949 4 2251 1 35746 Haloferax gibbonsii 385 0 species Haloferax mediterranei 148 1 2252 species 0 0 species 409 Haloferax volcanii 2246 1 Halobacteriales 1955 25 2235 order 0 8 1 1 4 family 0 1963268 14 1226 Haloarculaceae 1073987 2 146 Halorientalis 1 2 genus 0 0 no rank 2648975 1 144 144 Halorientalis sp. IM1011 1932360 1 species 0 146825 2 176 genus 0 Halorhabdus tiamatea 101 1 430914 0 species 0 species 146826 1 75 Halorhabdus utahensis 2237 5 521 Haloarcula 1 5 0 genus 2238 1 133 Haloarcula marismortui species 0 Haloarcula taiwanensis 127 1 1932004 0 species 130 Haloarcula hispanica 51589 1 0 species 0 no rank 1 2624677 126 species 0 1 1592728 Haloarcula sp. CBA1115 126 0 genus 287 2 63743 species 0 Natronomonas pharaonis 147 1 2257 140 Natronomonas moolapensis 416273 1 species 0 203135 2 92 Halomicrobium 1 2 0 genus 0 species 90 Halomicrobium mukohataei 57705 1 721 Halobacteriaceae 2236 10 family 0 1 1 Halobacterium 492 4 2239 0 genus 13 1 2242 1 117 Halobacterium salinarum species 0 1407499 1 170 Halobacterium hubeiense 0 species no rank 0 192 2668073 1 0 species 1 751944 Halobacterium sp. DL1 192 genus 0 1 2 73 Halanaeroarchaeum 1656823 2 0 species Halanaeroarchaeum sulfurireducens 71 1 1604004 0 genus 106 1 332246 106 Halalkalicoccus jeotgali 413810 1 0 species genus 0 1 1 Halodesulfurarchaeum 49 2 1980514 1 1873524 Halodesulfurarchaeum formicicum 48 0 species 6 1 class 0 50 224756 Methanomicrobia 10917 17 2191 Methanomicrobiales 1079 10 1 order 0 Methanomicrobiaceae 442 7 2194 family 0 10 1 112 Methanolacinia 230355 2 genus 0 1 2 0 species 54120 1 110 Methanolacinia petrolearia 3 1 genus 0 4 45989 Methanoculleus 320 97 1 2619537 0 no rank 0 species 1 86622 Methanoculleus sp. MAB1 97 110 Methanoculleus bourgensis 83986 1 0 species 0 species 110 Methanoculleus marisnigri 2198 1 5 1198451 Methanoregulaceae 342 12 1 0 family 4 1 0 genus 3 395331 Methanoregula 218 72 Methanoregula formicica 882104 1 species 0 142 Methanoregula boonei 358766 1 0 species genus 0 475087 1 112 Methanosphaerula palustris 112 1 475088 species 0 196137 2 179 0 family 1 11 genus 0 2202 2 179 Methanospirillum 1 2203 Methanospirillum hungatei 168 0 species 106 88404 2 0 family 8 1 0 genus 2 2192 Methanocorpusculum 106 83984 1 98 Methanocorpusculum labreanum 0 species order 0 1 4 9380 Methanosarcinales 94695 28 family 0 7 1 Methanosarcinaceae 8997 24 2206 0 genus 396 2 2225 1 2226 Methanococcoides methylutens 209 0 species 1 29291 Methanococcoides burtonii 187 0 species 6987 Methanosarcina 2207 13 genus 0 1 11 0 species 1 170861 Methanosarcina lacustris 367 1352 4 2644672 0 no rank species 0 228 Methanosarcina sp. WH1 1434102 1 species 0 Methanosarcina sp. WWM596 234 1 1434103 species 0 1 1434100 Methanosarcina sp. MTP4 408 species 0 1 1434099 Methanosarcina sp. Kolksee 482 species 0 832 Methanosarcina mazei 2209 1 2210 1 227 Methanosarcina thermophila 0 species species 0 418008 1 381 Methanosarcina horonobensis species 0 Methanosarcina acetivorans 346 1 2214 511 Methanosarcina vacuolata 2215 1 0 species 1 38027 Methanosarcina siciliae 1248 0 species 1712 Methanosarcina barkeri 2208 1 0 species 0 genus 659 1 2321 2322 1 659 Methanohalobium evestigatum 0 species 1 1 genus 0 2175 3 402 Methanohalophilus 231 Methanohalophilus mahii 2176 1 species 0 Methanohalophilus halophilus 170 1 2177 species 0 2220 1 134 genus 0 420950 1 134 Methanolobus psychrophilus 0 species 1 196136 268 genus 0 1 39669 Methanosalsum zhilinae 268 0 species 2 101191 Methanomethylovorans 144 8 1 genus 0 1 101192 Methanomethylovorans hollandica 136 0 species 3 143067 379 family 0 0 genus 1 7 379 Methanothrix 2222 3 0 species 1 2223 Methanothrix soehngenii 237 Methanosaeta harundinacea 135 1 301375 species 0 452 570264 4 order 0 family 0 1 1 452 Methanocellaceae 570265 4 1 9 genus 0 570266 3 451 Methanocella species 0 Methanocella arvoryzae 351 1 1175445 1175444 1 91 Methanocella conradii 0 species 0 clade 47 2283794 12764 27 183925 Methanobacteria 6076 7 1 class 0 order 0 3 1 Methanobacteriales 6069 26 2158 5703 Methanobacteriaceae 2159 23 0 family 1 1 1 14 genus 0 2160 8 1813 Methanobacterium 0 species 308 Methanobacterium paludis 868131 1 345 2 2627676 0 no rank 186 Methanobacterium sp. MB1 1379702 1 species 0 species 0 159 Methanobacterium sp. MZ-A1 1911685 1 118062 1 197 Methanobacterium congolense species 0 Methanobacterium subterraneum 158 1 59277 0 species species 0 1 2162 Methanobacterium formicicum 284 877455 1 507 Methanobacterium lacus species 0 5 145260 Methanothermobacter 354 5 1 0 genus 0 species Methanothermobacter wolfeii 86 1 145261 Methanothermobacter thermautotrophicus 52 1 145262 species 0 0 no rank 1 2631116 88 0 species 866790 1 88 Methanothermobacter sp. CaT2 species 0 Methanothermobacter marburgensis 123 1 145263 1 1 genus 0 2 2316 Methanosphaera 520 Methanosphaera stadtmanae 519 1 2317 0 species 2172 7 3015 Methanobrevibacter 1 4 0 genus species 0 1 294671 Methanobrevibacter olleyae 707 2 2638681 783 no rank 0 429 Methanobrevibacter sp. AbM4 224719 1 species 0 species 0 1609968 1 354 Methanobrevibacter sp. YE315 species 0 2173 1 582 Methanobrevibacter smithii 0 species Methanobrevibacter millerae 561 1 230361 378 Methanobrevibacter ruminantium 83816 1 0 species 0 family 2178 2 363 0 genus 1 1 363 Methanothermus 2179 2 species 0 Methanothermus fervidus 362 1 2180 Methanococci 6688 20 183939 0 class 8 1 0 order 1 2 6680 Methanococcales 2182 19 4024 Methanococcaceae 2183 8 family 0 1 5 1 1 0 genus 2 155862 Methanothermococcus 395 394 Methanothermococcus okinawensis 155863 1 species 0 2184 5 3624 Methanococcus 1 2 0 genus 39152 1 1586 Methanococcus maripaludis 0 species 401 Methanococcus aeolicus 42879 1 0 species Methanococcus voltae 1303 1 2188 0 species 0 species 1 2187 Methanococcus vannielii 332 family 0 1 2 2654 Methanocaldococcaceae 196117 10 2 196119 Methanotorris 351 1 1 0 genus species 0 2189 1 350 Methanotorris igneus genus 0 1 5 2301 Methanocaldococcus 196118 7 Methanocaldococcus vulcanius 424 1 73913 0 species species 0 395 Methanocaldococcus fervens 83171 1 0 species 1 2190 Methanocaldococcus jannaschii 405 1301915 1 398 Methanocaldococcus bathoardescens species 0 2641196 1 389 0 no rank 0 species 644281 1 389 Methanocaldococcus sp. FS406-22 0 species 67760 1 285 Methanocaldococcus infernus class 0 627 183980 10 order 0 2231 10 627 627 Archaeoglobaceae 2232 10 family 0 1 1 5 2233 Archaeoglobus 401 1 1 genus 0 105 Archaeoglobus profundus 84156 1 0 species 58290 1 89 Archaeoglobus veneficus species 0 0 species 1 1316941 Archaeoglobus sulfaticallidus 104 species 0 1 2234 Archaeoglobus fulgidus 102 190818 3 149 Geoglobus 1 1 0 genus 113653 1 68 Geoglobus ahangari species 0 1 565033 Geoglobus acetivorans 80 0 species genus 0 76 54260 1 0 species 54261 1 76 Ferroglobus placidus class 0 1 1 Thermococci 5180 41 183968 1 2 0 order 2258 40 5179 Thermococcales 3 1 family 0 39 2259 Thermococcaceae 5177 1 4 genus 0 2260 8 596 Pyrococcus 70 Pyrococcus abyssi 29292 1 species 0 species 0 72 Pyrococcus horikoshii 53953 1 2629106 2 223 no rank 0 0 species Pyrococcus sp. ST04 110 1 1183377 0 species Pyrococcus sp. NA2 113 1 342949 0 species 88 Pyrococcus kukulkanii 1609559 1 species 0 1 1008460 Pyrococcus yayanosii 26 0 species 1 2261 Pyrococcus furiosus 113 2263 29 4474 Thermococcus 1 12 genus 0 1 72803 Thermococcus siculi 2838 0 species Thermococcus eurythermalis 54 1 1505907 species 0 54262 1 94 Thermococcus chitonophagus species 0 1 1712654 Thermococcus piezophilus 37 species 0 0 species 26 Thermococcus cleftensis 163003 1 1 2265 Thermococcus litoralis 94 0 species 0 no rank 268 2627626 6 species 0 122420 1 32 Thermococcus sp. P6 1 1042877 Thermococcus sp. 4557 25 species 0 species 0 83 Thermococcus sp. 2319x1 1674923 1 species 0 Thermococcus sp. EXT12c 36 1 2016361 0 species 63 Thermococcus sp. AM4 246969 1 2008440 1 29 Thermococcus sp. 5-4 species 0 71997 1 44 Thermococcus gorgonarius 0 species 1 53952 Thermococcus peptonophilus 40 0 species 1 55802 Thermococcus barophilus 176 species 0 0 species Thermococcus kodakarensis 41 1 311400 species 0 57 Thermococcus celer 2264 1 0 species 35 Thermococcus barossii 54077 1 71998 1 33 Thermococcus pacificus species 0 582419 1 146 Thermococcus paralvinellae 0 species 0 species 46 Thermococcus profundus 49899 1 species 0 277988 1 30 Thermococcus thioreducens 0 species 1 110164 Thermococcus guaymasensis 45 species 0 Thermococcus radiotolerans 41 1 187880 species 0 1 342948 Thermococcus onnurineus 39 1 172049 Thermococcus sibiricus 142 species 0 187878 1 83 Thermococcus gammatolerans 0 species 0 species 1 195522 Thermococcus nautili 53 83867 1 104 0 genus 104 Palaeococcus pacificus 971279 1 species 0 clade 0 1783275 68 10348 48 28889 4331 phylum 0 48 183924 Thermoprotei 4331 2 1 0 class 380 871006 3 order 0 family 0 34 1 871007 0 genus 1 105850 34 242703 1 34 Acidilobus saccharovorans 0 species 255472 2 346 family 0 346 Caldisphaera 200414 2 0 genus 1 1 1 200415 Caldisphaera lagunensis 345 0 species 0 order 1 3 929 Desulfurococcales 114380 17 Desulfurococcaceae 671 11 2272 0 family 1 1 2279 3 334 Staphylothermus 1 6 genus 0 0 species 84599 1 122 Staphylothermus hellenicus species 0 Staphylothermus marinus 206 1 2280 2 477695 Thermogladius 61 6 1 0 genus 55 Thermogladius calderae 1200300 1 species 0 54253 1 17 0 genus species 0 17 Thermosphaera aggregans 54254 1 91 54258 2 genus 0 42 Ignicoccus hospitalis 160233 1 species 0 0 species 1 54259 Ignicoccus islandicus 49 167 2273 2 genus 0 0 species 120 Desulfurococcus amylolyticus 94694 1 47 Desulfurococcus mucosus 2275 1 0 species 0 family 1 6 255 Pyrodictiaceae 2307 5 genus 0 1 1 33 Pyrodictium 2308 2 32 Pyrodictium delaneyi 1273541 1 0 species 151 54247 1 genus 0 0 species 151 Hyperthermus butylicus 54248 1 65 1 54251 0 genus 0 species 65 Pyrolobus fumarii 54252 1 2281 12 2353 Sulfolobales 1 3 order 0 Sulfolobaceae 2350 11 118883 0 family 7 1 0 genus 1 2100760 308 1 2287 Sulfolobus solfataricus 308 0 species genus 0 1 2 260 Acidianus 12914 2 258 Acidianus hospitalis 563177 1 0 species 249 41980 2 genus 0 1006005 1 160 Metallosphaera cuprina 0 species Metallosphaera sedula 89 1 43687 0 species genus 0 1 9 1066 Sulfolobus 2284 4 0 species 571 Sulfolobus islandicus 43080 1 2641160 1 269 no rank 0 1 1891280 Sulfolobus sp. A20 269 species 0 0 species 1 2285 Sulfolobus acidocaldarius 217 460 1 69655 genus 0 0 species 460 Sulfolobus tokodaii 111955 1 0 order 1 1 Thermoproteales 667 15 2266 8 2267 Thermoproteaceae 370 1 1 0 family 164450 3 152 Vulcanisaeta 1 1 genus 0 0 species Vulcanisaeta moutnovskia 90 1 985052 0 species Vulcanisaeta distributa 61 1 164451 0 genus 76886 1 73 76887 1 73 Caldivirga maquilingensis species 0 81 2 2270 genus 0 32 Thermoproteus uzoniensis 184117 1 0 species species 0 1 2271 Thermoproteus tenax 49 0 genus 63 2276 1 1 2277 Pyrobaculum islandicum 63 species 0 0 family 1 1 Thermofilaceae 296 6 114378 9 1 genus 0 5 2268 Thermofilum 295 2269 1 56 Thermofilum pendens 0 species 1 1483572 Thermofilum carboxyditrophus 85 species 0 Thermofilum adornatus 83 1 1365176 species 0 0 species 62 Thermofilum uzonense 1550241 1 0 phylum 73 51967 1 genus 0 1 498845 73 498846 1 73 Candidatus Korarchaeum cryptofilum 0 species 3 1 phylum 0 19 651137 Thaumarchaeota 5944 3782 Nitrososphaeria 1643678 6 class 0 1 7 order 0 1172 1033996 2 1033997 2 1172 Nitrososphaeraceae 1 1 family 0 497726 1 1171 0 genus 1 1034015 Nitrososphaera viennensis 1171 species 0 order 0 1 1 2603 Candidatus Nitrosocaldales 1968909 3 2 1968910 Candidatus Nitrosocaldaceae 2602 1 1 family 0 2601 498374 1 genus 0 species 0 2045011 1 2601 Candidatus Nitrosocaldus islandicus 1 16 order 0 31932 7 1412 Nitrosopumilales 1396 Nitrosopumilaceae 338190 6 0 family 1 1 genus 0 5 1 Nitrosopumilus 874 3 338191 species 0 Candidatus Nitrosopumilus adriaticus 408 1 1580092 Candidatus Nitrosopumilus sediminis 461 1 1229909 species 0 521 Candidatus Nitrosomarinus 1993653 2 genus 0 1 8 species 0 513 Candidatus Nitrosomarinus catalina 1898749 1 5 651142 747 0 no rank 3 1825023 Candidatus Nitrosotenuis 310 2 1 0 genus Candidatus Nitrosotenuis cloacae 165 1 1603555 0 species species 0 Candidatus Nitrosotenuis sp. AQ6f 143 1 1846278 0 genus 4 1 Candidatus Nitrosopelagicus 437 2 1593364 1 1410606 Candidatus Nitrosopelagicus brevis 433 0 species