members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 7465 31 5285453 4655 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 0 0 1 name 4346 2 superkingdom 37 0 Bacteria 1 5246754 0 phylum 5 74152 1101 1 99260 no rank 0 300 uncultured Termite group 1 bacterium 300 167965 1 species 0 641853 1 class 0 247 247 641854 1 order 0 247 0 641876 1 family 247 0 genus 1 423604 0 species 1 423605 247 Elusimicrobium minutum Endomicrobia 554 1 class 3 447830 0 1 553 2 1783344 order 0 553 0 1783343 2 family genus 1408194 2 0 553 280 Endomicrobium proavitum 0 species 1 1408281 0 1 1408204 species 273 Candidatus Endomicrobium trichonymphae clade 89 1783257 0 11492 227 phylum 256845 3 0 3 1313211 class 4 0 Lentisphaeria 1 227 2 278082 order 0 1 Victivallales 1 223 222 no rank 1 1674876 0 Victivallales bacterium CCUG 44730 222 species 1 2094242 0 1 3154 Verrucomicrobia 2 0 25 74201 phylum 110 0 2 134549 class 9 0 genus 134550 2 110 1 Candidatus Xiphinematobacter 101 no rank 2648876 1 0 species 1 1704307 0 Candidatus Xiphinematobacter sp. Idaho Grape 101 class 1955630 4 0 586 Methylacidiphilales 586 1 order 717963 4 1 0 0 family 717964 3 585 585 1 Methylacidiphilum 1 0 genus 3 511745 357 Methylacidiphilum fumariolicum 0 species 591154 1 0 1 511746 species 227 Methylacidiphilum infernorum 576 no rank 417295 2 0 species 1 2026799 0 Verrucomicrobia bacterium 338 238 Verrucomicrobia bacterium IMCC26134 0 species 1 1637999 203494 5 class 2 0 Verrucomicrobiae 1 257 Verrucomicrobiales 255 1 order 48461 4 0 2 253 3 1647988 family 0 genus 3 239934 0 3 Akkermansia 253 1 Akkermansia muciniphila 120 species 239935 1 0 Akkermansia glycaniphila 130 1679444 1 species 0 0 5 11 414999 class 1 1623 Opitutae 1026 1 Opitutales 0 13 order 6 415000 1013 1 Opitutaceae 2 0 family 134623 5 0 1 178440 genus 325 325 Opitutus terrae 0 species 107709 1 no rank 278955 1 0 343 0 794903 1 species 343 Opitutaceae bacterium TAV5 genus 1961799 2 2 0 Lacunisphaera 343 1 Lacunisphaera limnophila 341 species 1838286 1 0 Puniceicoccales 592 1 order 415001 4 1 0 2 0 3 415002 family 1 591 Puniceicoccaceae 589 1 Coraliomargarita 0 1 genus 442430 2 Coraliomargarita akajimensis 588 species 395922 1 0 5056 203682 34 phylum 0 Phycisphaerae 875 1 class 666505 7 8 0 666506 4 order 0 6 Phycisphaerales 1 541 3 0 3 666507 family 1 535 Phycisphaeraceae 1 532 Phycisphaera 0 2 2 666508 genus Phycisphaera mikurensis 530 1 547188 species 0 0 2 2483366 order 326 0 2483367 2 family 326 326 0 2 2483368 genus 0 species 1 1940790 173 Phycisphaerae bacterium L21-RPul-D3 153 Phycisphaerae bacterium ST-PulAB-D4 0 species 1941349 1 203683 25 class 0 9 Planctomycetia 1 3742 1037 2691356 7 order 0 10 0 family 7 1763524 1037 1 Isosphaeraceae 294 1 Isosphaera 0 5 genus 2 127 128 1 species 0 Isosphaera pallida 289 3 0 466152 2 genus 1 350 Singulisphaera 0 species 466153 1 347 Singulisphaera acidiphila Paludisphaera 1 383 2 1763521 genus 0 2 Paludisphaera borealis 381 species 1 1387353 0 782 0 2691354 4 order 163 2691358 1 family 0 1 1676125 genus 0 163 0 1 1331910 species 163 Thermogutta terrifontis 619 family 2691357 3 0 265488 2 genus 0 8 Rhodopirellula 1 329 0 species 265606 1 321 Rhodopirellula baltica 290 0 123 1 genus 0 125 1 species 290 Pirellula staleyi Planctomycetales 1599 1 order 10 112 58 0 9 126 family 0 21 Planctomycetaceae 1 1541 Fuerstia 313 1 genus 2 1936111 2 0 1891926 1 species 0 Fuerstia marisgermanicae 311 genus 1649490 2 0 8 Rubinisphaera 246 1 Rubinisphaera brasiliensis 238 species 119 1 0 1 1649480 genus 0 192 species 120 1 0 Planctopirus limnophila 192 Planctomyces 769 1 genus 3 118 0 17 0 2 2648843 no rank 752 0 1 1632864 species 328 Planctomyces sp. SH-PL14 Planctomyces sp. SH-PL62 424 species 1 1636152 0 3 2691355 order 0 315 Gemmataceae 315 1 family 1914233 3 1 0 Gemmata 314 1 genus 2 113 12 0 2622970 1 no rank 0 302 302 Gemmata sp. SH-PL17 0 species 1 1630693 439 0 2 2517206 class 0 4 1127829 2 order 1 439 Candidatus Brocadiales 435 1 1127830 family 0 genus 1 380738 0 435 0 species 174633 1 435 Candidatus Kuenenia stuttgartiensis 187 3 134625 phylum 0 187 class 1921781 3 0 1921782 3 order 0 1 Kiritimatiellales 1 187 186 0 1921783 2 family 3 0 genus 2 1921784 186 1 Kiritimatiella 0 1 1307763 species 183 Kiritimatiella glycovorans 2868 phylum 24 204428 0 class 24 204429 0 8 Chlamydiia 2868 1 1 1976 Chlamydiales 15 0 51291 14 order 13 809 family 0 2 Chlamydiaceae 1 1961 0 1113537 12 no rank 1959 Chlamydia 1959 1 genus 12 810 0 20 0 85991 1 species 186 Chlamydia pecorum 158 Chlamydia gallinacea 0 species 1457153 1 151 Chlamydia muridarum 0 species 83560 1 species 1 83556 0 Chlamydia felis 169 Chlamydia pneumoniae 214 species 83558 1 0 0 1 83559 species 99 Chlamydia suis 144 Chlamydia trachomatis 0 species 1 813 Chlamydia caviae 228 species 1 83557 0 0 species 83555 1 165 Chlamydia abortus 211 Chlamydia psittaci 0 species 1 83554 Chlamydia avium 214 1457141 1 species 0 1963360 9 order 0 1 Parachlamydiales 1 884 0 family 1 92712 203 203 0 genus 1 34093 0 species 83561 1 203 Simkania negevensis 0 1 2 92714 family 1 136 Waddliaceae 0 1 71666 genus 135 1 71667 species 0 Waddlia chondrophila 135 0 2 92713 5 family 1 544 Parachlamydiaceae 1 0 genus 282132 2 180 1 Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila 179 389348 1 species 0 83551 2 genus 1 0 Parachlamydia 1 362 0 1 83552 species 361 Parachlamydia acanthamoebae phylum 40117 13 0 1804 class 13 203693 28 0 Nitrospira 1804 1 1776 1 Nitrospirales 6 0 order 189778 12 Nitrospiraceae 1 1770 11 189779 family 0 4 1 527 Nitrospira 7 0 5 1234 genus 0 1715989 1 species 80 Candidatus Nitrospira inopinata species 1325564 1 0 Nitrospira japonica 123 Nitrospira defluvii 111 1 330214 species 0 Nitrospira moscoviensis 206 42253 1 species 0 1 307 Leptospirillum 5 0 4 179 genus 655606 1 species group 0 140 species 1 180 0 Leptospirillum ferrooxidans 140 79 species group 261385 1 0 species 1660083 1 0 Leptospirillum sp. Group II 'CF-1' 79 83 0 species group 261386 1 0 species 178606 1 83 Leptospirillum ferriphilum 28261 1 genus 0 932 932 Thermodesulfovibrio yellowstonii 0 1 28262 species 0 clade 370 1783270 164667 349 phylum 456828 1 0 0 1 456826 genus 349 Candidatus Cloacimonas acidaminovorans 349 species 456827 1 0 0 phylum 65842 3 275 0 204430 3 class 275 1 0 3 218872 order 1 275 Fibrobacterales 274 1 Fibrobacteraceae 2 0 family 204431 2 272 0 genus 832 1 1 833 species 0 Fibrobacter succinogenes 272 phylum 7 142182 0 1168 class 7 219685 7 0 Gemmatimonadetes 1168 1 Gemmatimonadales 1 1161 219686 6 order 0 13 11 0 family 5 219687 1148 1 Gemmatimonadaceae Gemmatimonas 1 407 3 173479 genus 3 0 1 1379270 species 0 Gemmatimonas phototrophica 187 Gemmatimonas aurantiaca 217 1 173480 species 0 genus 1 1706036 0 730 0 1 861299 species 730 Gemmatirosa kalamazoonesis 0 clade 68336 359 162875 0 phylum 1090 21 2667 Chlorobia 1 2667 21 191410 class 0 19 2648 1 Chlorobiales 17 0 order 20 191411 family 19 191412 16 0 Chlorobiaceae 2631 1 254 0 genus 100715 1 1 100716 species 0 Chloroherpeton thalassium 254 0 8 274493 no rank 1278 33 0 5 1091 genus 1 955 Chlorobium Chlorobium phaeobacteroides 402 1 1096 species 0 1092 1 species 0 Chlorobium limicola 146 0 1 1094 species 114 Chlorobium phaeovibrioides 0 337090 1 species 260 Chlorobium chlorochromatii genus 3 1099 3 0 Pelodictyon 323 1 Pelodictyon luteolum 110 species 1 1100 0 210 Pelodictyon phaeoclathratiforme 0 1 34090 species 460 1 Chlorobaculum 0 45 genus 256319 4 Chlorobaculum limnaeum 151 274537 1 species 0 Chlorobaculum tepidum 126 species 1 1097 0 0 species 1 274539 138 Chlorobaculum parvum genus 1101 5 0 30 Prosthecochloris 623 1 Prosthecochloris aestuarii 134 1102 1 species 0 459 0 2632826 3 no rank 1868325 1 species 0 Prosthecochloris sp. CIB 2401 156 165 Prosthecochloris sp. GSB1 0 1 281093 species Prosthecochloris sp. HL-130-GSB 138 1974213 1 species 0 1 158616 Bacteroidetes 33 0 330 976 phylum 16 0 class 60 768503 16260 1 Cytophagia 0 60 order 59 768507 16244 1 Cytophagales Persicobacteraceae 680 1 family 1853234 3 5 0 Persicobacter 1 675 59740 2 genus 7 0 668 0 no rank 2664020 1 species 1085624 1 0 Persicobacter sp. JZB09 668 Flammeovirgaceae 1 2470 4 200667 family 0 7 1248 1 340671 no rank 0 1 1257021 species 0 Flammeovirgaceae bacterium 311 1248 Flammeovirga 1215 1 genus 2 59739 0 8 1207 0 2637820 1 no rank Flammeovirga sp. MY04 1207 species 1191459 1 0 Bernardetiaceae 1 1643 1937968 3 family 0 6 20 0 1937972 2 genus 1 1637 Bernardetia species 999 1 0 Bernardetia litoralis 1617 family 563798 10 0 11 Cyclobacteriaceae 3470 1 genus 3 68288 0 10 Cyclobacterium 1593 1 Cyclobacterium marinum 811 104 1 species 0 Cyclobacterium amurskyense 772 species 1 320787 0 2 232244 genus 0 4 Belliella 1 909 Belliella baltica 905 species 1 232259 0 3 0 genus 246875 2 560 1 Algoriphagus 557 Algoriphagus sp. M8-2 0 species 1 1727163 genus 390846 2 13 0 Echinicola 397 1 Echinicola vietnamensis 384 species 1 390884 0 family 89373 16 0 10 Cytophagaceae 3040 1 Dyadobacter 265 1 genus 120831 2 0 4 0 species 1 94254 261 Dyadobacter fermentans 2 319458 genus 11 0 Leadbetterella 1 409 398 Leadbetterella byssophila 0 316068 1 species genus 2 861914 0 2 Fibrella 157 1 155 no rank 2620963 1 0 Fibrella sp. ES10-3-2-2 155 species 1 1834519 0 1 634 Cytophaga 0 21 978 2 genus 0 985 1 species 613 Cytophaga hutchinsonii 338 genus 1 105 0 338 Runella slithyformis 0 species 106 1 genus 107 6 10 0 Spirosoma 1227 1 1211326 1 species 0 Spirosoma aerolatum 235 1 1178516 species 0 Spirosoma montaniterrae 210 species 2057025 1 0 Spirosoma sp. HA7 313 207 Spirosoma rigui 0 species 1 564064 Spirosoma radiotolerans 252 species 1379870 1 0 Hymenobacteraceae 1 3123 16 1853232 family 15 0 3 323449 genus 0 5 Pontibacter 1 545 species 400092 1 0 Pontibacter korlensis 311 1 388950 species 0 Pontibacter akesuensis 229 1802 1 Hymenobacter 0 28 genus 8 89966 1 1411621 species 0 Hymenobacter sedentarius 261 no rank 5 2615202 0 1299 1 1385663 species 0 Hymenobacter sp. DG25A 162 338 Hymenobacter sp. PAMC 26554 0 species 1 1484116 324 Hymenobacter sp. PAMC 26628 0 species 1 1484118 189 Hymenobacter sp. DG25B 0 species 1 1385664 1 1356852 species 0 Hymenobacter sp. APR13 286 Hymenobacter swuensis 214 1446467 1 species 0 genus 1379908 4 0 14 Rufibacter 761 1 Rufibacter tibetensis 302 512763 1 species 0 no rank 2639626 2 0 445 Rufibacter sp. DG15C 198 species 1379909 1 0 Rufibacter sp. DG31D 247 1 1379910 species 0 1 588 Amoebophilaceae 2 0 1501348 4 family 0 genus 1 273135 205 1 2641185 no rank 0 205 0 249402 1 species 205 Cardinium endosymbiont of Encarsia pergandiella 381 1 Candidatus Amoebophilus 0 4 genus 281119 2 281120 1 species 0 Candidatus Amoebophilus asiaticus 377 1170 0 2 2762301 family 1 1170 Marivirga 0 6 869806 2 genus species 1006 1 0 Marivirga tractuosa 1164 class 7 1937959 0 761 Saprospirales 761 1 order 1936988 7 4 0 2 0 family 3 89374 280 1 Saprospiraceae Saprospira 278 1 genus 2 1007 0 3 1 1008 species 0 Saprospira grandis 275 1 0 family 3 1937961 477 1 Haliscomenobacteraceae 2 2349 genus 1 0 Haliscomenobacter 1 476 475 Haliscomenobacter hydrossis 0 2350 1 species 1 11245 Bacteroidia 18 0 68 200643 class 0 15 order 11 1970189 2525 1 Marinilabiliales 3 558415 family 9 0 Marinilabiliaceae 1 503 8 0 genus 2 1193324 494 1 Alkalitalea Alkalitalea saponilacus 486 species 889453 1 0 511 1471398 2 family 0 2 1471399 genus 0 1 Draconibacterium 1 511 Draconibacterium orientale 510 1 1168034 species 0 family 3 1970190 0 6 Salinivirgaceae 539 1 1 533 Salinivirga 0 2 2 1970191 genus 0 1 1307839 species 531 Salinivirga cyanobacteriivorans Marinifilaceae 957 1 family 2 1573805 4 0 953 genus 2060722 1 0 953 Marinifilaceae bacterium SPP2 0 1717717 1 species 0 54 56 171549 order 1 8702 Bacteroidales 0 2005523 1 family 485 485 genus 1 346096 0 Paludibacter propionicigenes 485 species 1 185300 0 210 0 1853231 2 family Odoribacter 210 1 genus 2 283168 0 1 209 Odoribacter splanchnicus 0 28118 1 species family 4 171551 0 2 Porphyromonadaceae 335 1 1 333 Porphyromonas 3 0 3 836 genus 0 28123 1 species 104 Porphyromonas asaccharolytica 0 species 837 1 226 Porphyromonas gingivalis 182 0 185291 1 no rank species 1400053 1 0 Bacteroidales bacterium CF 182 family 171552 11 0 4 Prevotellaceae 1718 1 10 838 genus 10 0 Prevotella 1 1714 0 species 1 28132 156 Prevotella melaninogenica 0 species 1 28131 517 Prevotella intermedia 123 Prevotella fusca 0 species 589436 1 52227 1 species 0 Prevotella dentalis 140 147 Prevotella ruminicola 0 species 1 839 Prevotella enoeca 92 1 76123 species 0 270 0 1 2638335 no rank 0 species 652716 1 270 Prevotella sp. oral taxon 299 species 28129 1 0 Prevotella denticola 79 0 species 1177574 1 180 Prevotella jejuni family 7 2005525 4 0 Tannerellaceae 600 1 Tannerella 282 1 genus 3 195950 3 0 0 no rank 2620507 1 111 species 1 712710 0 Tannerella sp. oral taxon HOT-286 111 species 28112 1 0 Tannerella forsythia 168 314 1 Parabacteroides 3 0 genus 3 375288 0 1 823 species 164 Parabacteroides distasonis 147 0 no rank 1 2649774 Parabacteroides sp. CT06 147 1 2025876 species 0 129 1 Barnesiellaceae 0 3 family 3 2005519 0 5 genus 2 397864 126 1 Barnesiella 121 Barnesiella viscericola 0 1 397865 species 171550 5 family 0 3 Rikenellaceae 1 327 1 156 Alistipes 1 0 2 239759 genus 0 214856 1 species 155 Alistipes finegoldii 0 3 1611681 2 genus 1 168 Mucinivorans 0 species 1433126 1 165 Mucinivorans hirudinis 1708 no rank 333046 5 0 0 genus 3 909656 835 Bacteroides dorei 306 species 1 357276 0 279 Bacteroides vulgatus 0 species 821 1 Bacteroides salanitronis 250 376805 1 species 0 Candidatus Azobacteroides 873 1 genus 511434 2 0 2 511435 1 species 0 Candidatus Azobacteroides pseudotrichonymphae 871 family 5 2005520 0 802 141 0 1 307628 genus 0 species 1642646 1 141 Petrimonas mucosa 7 0 genus 1784836 2 479 1 Fermentimonas Fermentimonas caenicola 472 1562970 1 species 0 294702 2 genus 4 0 Proteiniphilum 1 182 1 1642647 species 0 Proteiniphilum saccharofermentans 178 0 1 family 11 815 2152 1 Bacteroidaceae 816 10 genus 42 0 Bacteroides 1 2151 species 290053 1 0 Bacteroides helcogenes 161 442 Bacteroides fragilis 0 1 817 species 201 Bacteroides caecimuris 0 species 1 1796613 0 species 1 246787 258 Bacteroides cellulosilyticus Bacteroides heparinolyticus 123 1 28113 species 0 322 Bacteroides thetaiotaomicron 0 species 818 1 28116 1 species 0 Bacteroides ovatus 265 0 species 1 28119 142 Bacteroides zoogleoformans species 1 47678 0 Bacteroides caccae 195 class 24 117747 7 0 Sphingobacteriia 9292 1 200666 23 order 25 0 Sphingobacteriales 1 9285 9260 1 Sphingobacteriaceae 0 25 family 84566 22 0 38 6 84567 genus 1 3170 Pedobacter Pedobacter ginsengisoli 692 363852 1 species 0 746 Pedobacter cryoconitis 0 1 188932 species 597 Pedobacter steynii 0 430522 1 species 639 2628915 1 no rank 0 639 Pedobacter sp. PACM 27299 0 1727164 1 species Pedobacter heparinus 458 984 1 species 0 0 6 1649482 2 genus 1 746 Pseudopedobacter species 151895 1 0 Pseudopedobacter saltans 740 1 670 Solitalea 7 0 2 929509 genus Solitalea canadensis 663 1 995 species 0 genus 6 28453 26 0 Sphingobacterium 2616 1 0 1010 1 species 470 Sphingobacterium mizutaii 2120 no rank 2609468 4 0 0 species 1933220 1 519 Sphingobacterium sp. B29 0 743722 1 species 398 Sphingobacterium sp. 21 Sphingobacterium sp. G1-14 533 species 1 2003121 0 0 species 1538644 1 670 Sphingobacterium sp. ML3W 827 no rank 84568 1 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 827 species 1986952 1 0 genus 4 423349 9 0 Mucilaginibacter 1206 1 415 Mucilaginibacter gotjawali 0 1 1550579 species 1 2617802 no rank 0 333 Mucilaginibacter sp. PAMC 26640 333 species 1300914 1 0 Mucilaginibacter sp. BJC16-A31 449 species 1 1234841 0 Chitinophagia 1 2802 1853228 16 class 4 0 2798 1 Chitinophagales 6 0 order 15 1853229 2792 1 Chitinophagaceae 34 0 family 563835 14 387 1769012 1 genus 0 387 0 1 2636138 no rank Arachidicoccus sp. BS20 387 1850526 1 species 0 398041 2 genus 3 0 Flavisolibacter 1 450 0 1 1492898 species 447 Flavisolibacter tropicus Niabella 1 555 3 379899 genus 0 8 248 Niabella ginsenosidivorans 0 species 1176587 1 299 Niabella soli 0 446683 1 species Niastella 1 397 354354 2 genus 3 0 Niastella koreensis 394 species 1 354356 0 79328 3 genus 3 0 Chitinophaga 1 611 species 79329 1 0 Chitinophaga pinensis 261 347 Chitinophagaceae bacterium 13 0 2029983 1 species 8 0 649460 2 genus 1 358 Filimonas 0 species 477680 1 350 Filimonas lacunae Flavobacteriia 1 117192 117743 147 class 59 0 0 101 order 200644 146 117133 1 Flavobacteriales family 1755828 2 0 696 1 696 Ichthyobacterium 0 28 2 1755829 genus 0 242600 1 species 668 Ichthyobacterium seriolicida family 39782 10 11 0 Blattabacteriaceae 4916 1 Blattabacterium 4905 1 genus 34098 9 0 47 699 Blattabacterium cuenoti 0 species 1 1653831 3561 no rank 2647581 6 0 Blattabacterium sp. (Blaberus giganteus) 741 species 1186051 1 0 504 Blattabacterium sp. (Blatta orientalis) 0 1 367806 species 0 species 1316444 1 649 Blattabacterium sp. (Nauphoeta cinerea) Blattabacterium sp. (Mastotermes darwiniensis) 546 39768 1 species 0 Blattabacterium sp. (Periplaneta americana) 536 species 1 367488 0 624186 1 species 0 Blattabacterium sp. (Blattella germanica) 585 0 1 164514 species 598 Blattabacterium punctulatus no rank 3 313602 0 1389 Candidatus Sulcia 1 1086 336809 2 genus 4 0 Candidatus Sulcia muelleri 1082 species 336810 1 0 303 0 genus 1 1940138 1415657 1 species 0 Candidatus Walczuchella monophlebidarum 303 497 0 104 49546 family 1 95477 Flavobacteriaceae 0 3 genus 1649495 2 1730 1 Seonamhaeicola 1727 0 2622645 1 no rank 1727 Seonamhaeicola sp. S2-3 0 1 1936081 species genus 1 417127 0 1213 Zunongwangia profunda 1213 species 1 398743 0 Gramella 1 2838 292691 5 genus 0 21 638 Gramella sp. SH35 0 1 2126553 species Gramella forsetii 915 411153 1 species 0 1 1486245 species 0 Gramella flava 525 0 1913577 1 species 739 Gramella sp. LPB0144 1 4031 Nonlabens 0 101 5 363408 genus 0 1 319236 species 1002 Nonlabens sediminis 990 Nonlabens dokdonensis 0 328515 1 species 1938 no rank 2615035 2 0 Nonlabens sp. MB-3u-79 861 species 2058134 1 0 0 1476901 1 species 1077 Nonlabens sp. MIC269 0 20 genus 4 104264 5185 1 Cellulophaga 59600 1 species 0 Cellulophaga algicola 1586 0 979 1 species 1835 Cellulophaga lytica 1744 Cellulophaga baltica 0 species 76594 1 genus 1204360 1 0 1287 1287 Siansivirga zeaxanthinifaciens 0 species 762954 1 32 0 237 9 genus 1 11138 Flavobacterium 0 species 1 1492737 1069 Flavobacterium gilvum 0 1763534 1 species 770 Flavobacterium crassostreae 1067 Flavobacterium branchiophilum 0 1 55197 species Flavobacterium johnsoniae 2539 species 1 986 0 0 species 1 96345 1067 Flavobacterium psychrophilum species 312277 1 0 Flavobacterium indicum 1489 996 1 species 0 Flavobacterium columnare 2104 Flavobacterium commune 1001 species 1306519 1 0 1326 genus 216431 1 0 Croceibacter atlanticus 1326 313588 1 species 0 2439 1 2700084 genus 0 0 1850246 1 species 2439 Lutibacter sp. LPB0138 Muricauda 1484 1 genus 3 111500 5 0 861 Muricauda ruestringensis 0 species 111501 1 0 1 516051 species 618 Muricauda lutaonensis genus 1 143222 0 1037 no rank 1 2633436 0 1037 Salegentibacter sp. T436 1037 species 1729720 1 0 1 1460 Olleya 1 0 336276 2 genus 1459 0 no rank 1 2615019 1459 Olleya sp. Bg11-27 0 species 1 2058135 2092 1 Lutibacter 0 10 genus 2 358023 2082 Lutibacter profundi 0 1 1622118 species 0 13 genus 104267 5 7487 1 Tenacibaculum 584609 1 species 0 Tenacibaculum jejuense 2272 0 species 107401 1 1598 Tenacibaculum maritimum 2128 Tenacibaculum todarodis 0 species 1850252 1 Tenacibaculum dicentrarchi 1476 1 669041 species 0 Formosa 2140 1 genus 225842 3 0 7 2133 0 no rank 2644710 2 0 1 1336795 species 1197 Formosa sp. Hel3_A1_48 Formosa sp. Hel1_33_131 936 species 1336794 1 0 537 0 1 1176327 genus 537 0 no rank 1 2636237 Aureitalea sp. RR4-38 537 species 2094025 1 0 genus 1 1209327 0 1356 Flavivirga eckloniae 1356 species 1803846 1 0 0 31 genus 4 326319 2852 1 Dokdonia Dokdonia donghaensis 948 species 326320 1 0 0 no rank 2615033 2 1873 species 983548 1 0 Dokdonia sp. 4H-3-7-5 974 Dokdonia sp. MED134 899 species 313590 1 0 61432 2 no rank 0 1852 1150389 1 species 0 Flavobacteriaceae bacterium UJ101 1574 278 Flavobacteriaceae bacterium 3519-10 0 1 531844 species 1 6005 Capnocytophaga 51 0 1016 15 genus 601 Capnocytophaga cynodegmi 0 28189 1 species species 1 1017 0 Capnocytophaga gingivalis 271 203 Capnocytophaga haemolytica 0 species 45243 1 267 Capnocytophaga leadbetteri 0 species 327575 1 Capnocytophaga ochracea 294 1018 1 species 0 species 1 1848904 0 Capnocytophaga stomatis 586 2411 2640652 6 no rank 0 species 1 1945658 0 Capnocytophaga sp. H4358 533 533 Capnocytophaga sp. H2931 0 species 1945657 1 315 Capnocytophaga sp. oral taxon 323 0 1705617 1 species 0 species 1 1316596 393 Capnocytophaga sp. oral taxon 878 0 species 1316593 1 289 Capnocytophaga sp. oral taxon 864 0 209053 1 species 348 Capnocytophaga sp. ChDC OS43 635 Capnocytophaga sputigena 0 species 1019 1 species 28188 1 0 Capnocytophaga canimorsus 686 0 178469 1 genus 825 825 Arenibacter algicola 0 species 616991 1 40 0 genus 5 252356 4507 1 Maribacter Maribacter cobaltidurans 705 1178778 1 species 0 0 no rank 3 2615042 3762 0 1836467 1 species 1324 Maribacter sp. T28 0 1 313603 species 1061 Maribacter sp. HTCC2170 1377 Maribacter sp. 1_2014MBL_MicDiv 0 species 1644130 1 Aequorivita 1 800 2 153265 genus 0 4 Aequorivita sublithincola 796 1 101385 species 0 51 0 291183 4 genus 1 5302 Lacinutrix 3479 0 no rank 2 2647285 0 species 1 2057808 1758 Lacinutrix sp. Bg11-31 Lacinutrix sp. 5H-3-7-4 1721 species 1 983544 0 0 1486034 1 species 1772 Lacinutrix venerupis 0 genus 1518147 1 1482 0 1790137 1 species 1482 Wenyingzhuangia fucanilytica 0 13 3 286104 genus 1 3347 Winogradskyella 3334 2 2615021 no rank 0 1936 Winogradskyella sp. PG-2 0 1 754409 species 0 1 1936080 species 1398 Winogradskyella sp. J14-2 1094 393005 1 genus 0 0 species 2069432 1 1094 Tamlana sp. UJ94 Robiginitalea 1 251 2 252306 genus 1 0 252307 1 species 0 Robiginitalea biformata 250 663 0 389486 1 genus 0 no rank 2648869 1 663 species 1 1453352 0 Sediminicola sp. YIK13 663 genus 6 52959 0 79 Polaribacter 10727 1 0 196858 3 no rank 5811 0 313598 1 species 2188 Polaribacter sp. MED152 species 1529069 1 0 Polaribacter sp. BM10 2007 Polaribacter sp. ALD11 1616 1 2058137 species 0 Polaribacter vadi 2460 species 1774273 1 0 species 1 996801 0 Polaribacter reichenbachii 2377 261827 1 genus 0 1937 Algibacter alginicilyticus 1937 species 1736674 1 0 genus 2 83612 3 0 Psychroflexus 1212 1 57029 1 species 0 Psychroflexus torquis 1209 76831 5 genus 0 83 Myroides 1 2903 0 1 76832 species 731 Myroides odoratimimus Myroides profundi 672 480520 1 species 0 1417 2642485 2 no rank 0 0 1583100 1 species 715 Myroides sp. A21 species 1458492 1 0 Myroides sp. ZB35 702 1 112040 genus 0 441 Zobellia galactanivorans 441 species 63186 1 0 13062 0 20 2762318 family 611 0 1013 1 genus 611 Weeksella virosa 0 1014 1 species 1088 genus 34084 1 0 species 34085 1 0 Riemerella anatipestifer 1088 4349 1 Elizabethkingia 0 55 genus 6 308865 0 1756150 1 species 540 Elizabethkingia genomosp. 4 1513 Elizabethkingia anophelis 0 1 1117645 species 684 Elizabethkingia genomosp. 3 0 1756149 1 species 0 species 172045 1 899 Elizabethkingia miricola 658 Elizabethkingia meningoseptica 0 1 238 species 2782232 10 no rank 0 6498 0 2782228 1 genus 291 291 Chryseobacterium taklimakanense 0 species 536441 1 Chryseobacterium 6207 1 genus 59732 9 0 28 0 species 1265445 1 250 Chryseobacterium camelliae 556 Chryseobacterium gallinarum 0 species 1324352 1 2310 3 2593645 no rank 0 Chryseobacterium sp. IHB B 17019 601 species 1721091 1 0 0 2015076 1 species 873 Chryseobacterium sp. T16E-39 878220 1 species 0 Chryseobacterium sp. StRB126 836 species 1 558152 0 Chryseobacterium piperi 787 1 253 species 0 Chryseobacterium indologenes 1285 0 species 1 1685010 991 Chryseobacterium glaciei 0 1 genus 28250 2 516 1 Ornithobacterium Ornithobacterium rhinotracheale 515 species 28251 1 0 7 Cryomorphaceae 0 family 246874 1 0 1333713 2 family 649 genus 267986 2 13 0 Owenweeksia 649 1 0 species 253245 1 636 Owenweeksia hongkongensis family 1853230 3 1 0 Crocinitomicaceae 836 1 835 1 Fluviicola 10 0 genus 332102 2 0 species 1 191579 825 Fluviicola taffensis 0 5 order 1100069 7 1031 1 Bacteroidetes Order II. Incertae sedis 0 16 family 563843 6 1026 1 Rhodothermaceae 1 303 Salinibacter 6 0 146918 2 genus 297 Salinibacter ruber 0 146919 1 species 29548 2 genus 0 1 Rhodothermus 1 330 29549 1 species 0 Rhodothermus marinus 329 377 1196022 1 no rank 0 species 1 1779382 0 Rhodothermaceae bacterium RA 377 1592 8 1134404 phylum 0 6 0 795747 8 class 1 1592 Ignavibacteria order 7 795748 10 0 Ignavibacteriales 1586 1 family 3 795749 3 0 Ignavibacteriaceae 1264 1 3 0 genus 2 795750 1261 1 Ignavibacterium Ignavibacterium album 1258 1 591197 species 0 0 1 family 3 1334117 312 1 Melioribacteraceae 0 2 1134403 2 genus 1 311 Melioribacter 1134405 1 species 0 Melioribacter roseus 309 200930 10 phylum 0 2753 15 0 class 68337 10 2753 1 Deferribacteres Deferribacterales 1 2738 9 191393 order 0 12 14 0 191394 8 family 1 2726 Deferribacteraceae Flexistipes 465 1 genus 2351 2 0 3 species 1 2352 0 Flexistipes sinusarabici 462 0 2 genus 545865 2 555 1 Calditerrivibrio Calditerrivibrio nitroreducens 553 species 477976 1 0 0 genus 1 53572 1392 species 1 197162 0 Deferribacter desulfuricans 1392 Denitrovibrio 1 300 117999 2 genus 10 0 0 118000 1 species 290 Denitrovibrio acetiphilus 0 phylum 10 508458 542 Synergistia 542 1 class 10 649775 0 3 1 539 Synergistales 0 6 9 649776 order 0 8 649777 family 533 Cloacibacillus 1 112 508459 2 genus 1 0 1 1197717 species 0 Cloacibacillus porcorum 111 2 0 genus 49894 2 99 1 Acetomicrobium Acetomicrobium mobile 97 97477 1 species 0 Aminobacterium 165 1 genus 2 81466 0 6 0 1 81468 species 159 Aminobacterium colombiense 113 0 genus 1 336260 0 species 1 336261 113 Thermovirga lienii 44 0 1 81461 genus Thermanaerovibrio acidaminovorans 44 81462 1 species 0 0 43 200918 phylum 9270 0 12 43 188708 class 1 9270 Thermotogae Thermotogales 1 5517 2419 28 order 0 15 0 5 17 188709 family 1 1915 Thermotogaceae Thermotoga 976 1 genus 2335 11 0 25 species 1 93929 0 Thermotoga petrophila 56 Thermotoga profunda 295 species 1508420 1 0 Thermotoga maritima 101 1 2336 species 0 no rank 2631113 4 0 284 84 Thermotoga sp. RQ7 0 1 126738 species 0 1157947 1 species 68 Thermotoga sp. Cell2 species 126740 1 0 Thermotoga sp. RQ2 52 80 Thermotoga sp. 2812B 0 1 1157948 species 104 Thermotoga neapolitana 0 1 2337 species 1508419 1 species 0 Thermotoga caldifontis 58 species 1 93930 0 Thermotoga naphthophila 53 Pseudothermotoga 1 934 5 1643951 genus 0 15 54 Pseudothermotoga hypogea 0 57487 1 species Pseudothermotoga lettingae 305 species 177758 1 0 0 1 38322 species 299 Pseudothermotoga elfii 261 Pseudothermotoga thermarum 0 species 119394 1 3587 1 Fervidobacteriaceae 5 0 family 1643950 10 5 2420 genus 41 0 Thermosipho 1 2621 0 1 2421 species 752 Thermosipho africanus 1181 0 no rank 2676525 2 0 species 1437364 1 597 Thermosipho sp. 1070 species 1462747 1 0 Thermosipho sp. 1063 584 Thermosipho melanesiensis 647 46541 1 species 0 0 21 2422 4 genus 1 961 Fervidobacterium 93466 1 species 0 Fervidobacterium pennivorans 403 1 2423 species 0 Fervidobacterium islandicum 157 species 1 2424 0 Fervidobacterium nodosum 380 3099 1 Petrotogales 14 0 order 1643947 8 family 7 1643949 0 3085 458 1 Petrotoga 0 3 genus 2 28236 455 Petrotoga mobilis 0 species 69499 1 Defluviitoga 735 1 genus 1511648 2 0 1 0 species 1 1006576 734 Defluviitoga tunisiensis 23 0 160798 3 genus 1 1892 Marinitoga 919 0 2640159 1 no rank Marinitoga sp. 1137 919 species 1545835 1 0 950 Marinitoga piezophila 0 species 149715 1 6 1643946 order 0 6 Kosmotogales 1 642 family 1643948 5 0 6 Kosmotogaceae 636 1 0 genus 1184396 1 147 147 Mesotoga prima 0 1184387 1 species 1 483 Kosmotoga 0 2 651456 3 genus 0 species 651457 1 197 Kosmotoga olearia 0 species 1330330 1 284 Kosmotoga pacifica 0 3 2323 no rank 597 597 3 1783234 clade 0 0 95901 2 clade 537 537 0 class 2497643 2 537 0 order 2497644 2 2 2497645 family 0 537 Candidatus Babela 537 1 genus 2 1551504 6 0 531 Candidatus Babela massiliensis 0 673862 1 species 0 1 95818 phylum 60 60 1 1895827 no rank 0 0 2056494 1 species 60 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 1783272 1624 clade 4046826 2542 phylum 36 200795 0 1 219 Caldilineae 6 0 475962 4 class 213 3 475963 order 0 family 3 475964 0 1 Caldilineaceae 213 1 genus 233191 2 0 1 Caldilinea 212 1 Caldilinea aerophila 211 1 133453 species 0 356 0 class 4 1382928 4 1382929 order 3 0 Ardenticatenales 1 356 0 2 family 3 1382930 353 1 Ardenticatenaceae genus 1988031 2 2 0 Candidatus Promineofilum 351 1 0 species 1 1806508 349 Candidatus Promineofilum breve Chloroflexia 1 914 32061 10 class 0 1 913 1 Chloroflexales 0 8 order 9 32064 520 0 5 1508594 suborder Chloroflexaceae 1 520 1106 5 family 1 0 1 519 Chloroflexus 0 12 1107 4 genus Chloroflexus aggregans 205 1 152260 species 0 151 0 2 1108 species 1 302 Chloroflexus aurantiacus 480224 1 strain 0 Chloroflexus sp. Y-400-fl 151 suborder 1508595 3 0 385 0 family 1508635 3 385 5 0 120961 3 genus 1 385 Roseiflexus 1 120962 species 0 Roseiflexus castenholzii 185 0 no rank 1 2609473 195 195 Roseiflexus sp. RS-1 0 species 357808 1 314 0 189775 4 class 231 0 2 85000 subclass Sphaerobacterales 231 1 order 2 85001 5 0 0 1 255728 suborder 226 family 1 85002 0 226 1 2056 genus 0 226 226 Sphaerobacter thermophilus 0 2057 1 species Thermomicrobiales 83 1 order 2 189776 0 2 family 189777 1 0 81 81 499 1 genus 0 Thermomicrobium roseum 81 500 1 species 0 332 5 292625 class 0 5 292629 order 0 3 Anaerolineales 1 332 0 1 292628 4 family 1 329 Anaerolineaceae 114 1 233189 genus 0 Anaerolinea thermophila 114 species 1 167964 0 100 no rank 1324991 1 0 1 1889813 species 0 Anaerolineaceae bacterium oral taxon 439 100 114 2019482 1 genus 0 Brevefilum fermentans 114 species 1986204 1 0 1 0 9 301297 class 1 407 Dehalococcoidia Dehalogenimonas 1 132 3 670486 genus 6 0 species 1839801 1 0 Dehalogenimonas formicexedens 65 0 species 552810 1 61 Dehalogenimonas lykanthroporepellens 274 1 Dehalococcoidales 1 0 order 5 1202465 1 273 Dehalococcoidaceae 0 2 1202464 4 family 271 1 Dehalococcoides 0 3 genus 61434 3 49 0 1 237581 no rank 0 1522671 1 species 49 Dehalococcoides sp. UCH007 Dehalococcoides mccartyi 219 1 61435 species 0 33922 phylum 101 544448 0 Mollicutes 1 32243 97 31969 class 0 110 22 0 order 186329 13 3320 1 Acholeplasmatales 7 0 2146 12 family 1 3298 Acholeplasmataceae 1 1400 Candidatus Phytoplasma 0 20 6 33926 genus 820 0 85620 3 species group Maize bushy stunt phytoplasma 255 1 202462 species 0 276 Onion yellows phytoplasma 0 1 100379 species 0 species 229545 1 289 Aster yellows witches'-broom phytoplasma 334 species group 85630 1 0 0 species 37692 1 334 Candidatus Phytoplasma mali 85632 1 species group 0 226 226 Candidatus Phytoplasma australiense 0 59748 1 species genus 2147 5 0 6 Acholeplasma 1891 1 641 Acholeplasma palmae 0 38986 1 species Acholeplasma oculi 520 1 35623 species 0 Acholeplasma brassicae 335 species 1 61635 0 Acholeplasma laidlawii 389 2148 1 species 0 34 0 order 2085 44 14783 1 Mycoplasmatales family 2092 43 30 0 Mycoplasmataceae 14749 1 2767358 12 genus 0 4308 0 2113 1 species 182 Mycoplasma californicum species 2109 1 0 Mycoplasma synoviae 228 species 1 2107 0 Mycoplasma pulmonis 363 Mycoplasma canis 438 1 29555 species 0 397 Mycoplasma arginini 0 2094 1 species 0 species 1 2115 375 Mycoplasma fermentans Mycoplasma cynos 398 species 1 171284 0 species 2110 1 0 Mycoplasma agalactiae 433 Mycoplasma bovis 693 species 28903 1 0 species 1 2112 0 Mycoplasma bovigenitalium 266 1 48003 species 0 Mycoplasma pullorum 269 266 Mycoplasma bovirhinis 0 29553 1 species 767 1 Ureaplasma 2 0 genus 2129 3 Ureaplasma urealyticum 382 species 2130 1 0 species 1 134821 0 Ureaplasma parvum 383 genus 27 2093 142 0 Mycoplasma 9644 1 0 species 29554 1 347 Mycoplasma canadense 438 Mycoplasma crocodyli 0 1 50052 species 264 Mycoplasma dispar 0 species 1 86660 0 1 57372 species 152 Mycoplasma suis 2104 1 species 0 Mycoplasma pneumoniae 54 0 species 28227 1 507 Mycoplasma penetrans Mycoplasma arthritidis 187 species 2111 1 0 85 Mycoplasma wenyonii 0 65123 1 species 2099 1 species 0 Mycoplasma hyopneumoniae 453 1 171632 species 0 Mycoplasma ovis 110 419 Mycoplasma hyorhinis 0 2100 1 species 522 Mycoplasma hominis 0 species 1 2098 0 species group 3 656088 2598 Mycoplasma mycoides 1232 species 1 2102 0 Mycoplasma capricolum 703 species 2095 1 0 0 1 2105 species 663 Mycoplasma leachii 296 Mycoplasma haemofelis 0 1 29501 species 0 1 2118 species 488 Mycoplasma mobile 984991 1 species 0 Mycoplasma parvum 203 no rank 1 2683645 0 369 species 1749074 1 0 Mycoplasma sp. (ex Biomphalaria glabrata) 369 196 Mycoplasma genitalium 0 1 2097 species species 136241 1 0 Mycoplasma haemocanis 172 1 2128 species 0 Mycoplasma flocculare 222 Mycoplasma bovoculi 265 1 45362 species 0 species 1 2096 0 Mycoplasma gallisepticum 285 Mycoplasma yeatsii 483 species 1 51365 0 0 species 1 2123 387 Mycoplasma putrefaciens 39 186328 order 25 0 Entomoplasmatales 1 14030 9698 1 Spiroplasmataceae 0 19 family 24 2131 133 0 genus 2132 23 9679 1 Spiroplasma 216936 1 species 0 Spiroplasma diminutum 562 461 Spiroplasma kunkelii 0 1 47834 species 335 Spiroplasma chrysopicola 0 species 1 216933 339 Spiroplasma apis 0 species 1 2137 0 species 1 216945 319 Spiroplasma syrphidicola Spiroplasma clarkii 431 2139 1 species 0 0 species 1 2136 404 Spiroplasma monobiae Spiroplasma floricola 599 species 216937 1 0 0 species 315358 1 253 Spiroplasma eriocheiris Spiroplasma helicoides 511 1 216938 species 0 Spiroplasma cantharicola 615 species 1 362837 0 Spiroplasma litorale 671 1 216942 species 0 Spiroplasma atrichopogonis 248 species 1114980 1 0 Spiroplasma citri 424 2133 1 species 0 612 Spiroplasma culicicola 0 216935 1 species 590 Spiroplasma taiwanense 0 1 2145 species 0 species 1 2144 244 Spiroplasma mirum Spiroplasma corruscae 449 species 1 216934 0 323 Spiroplasma sabaudiense 0 1 216944 species 633 0 no rank 2637901 2 Spiroplasma sp. NBRC 100390 317 1914410 1 species 0 316 Spiroplasma sp. TU-14 0 1 1898044 species 0 species 1 216946 523 Spiroplasma turonicum Entomoplasmataceae 1 4307 33925 14 family 0 26 genus 5 46238 0 10 Entomoplasma 1255 1 1 74700 species 0 Entomoplasma freundtii 143 0 81459 1 species 388 Entomoplasma melaleucae Entomoplasma somnilux 356 215578 1 species 0 species 214888 1 0 Entomoplasma luminosum 358 38 0 46239 8 genus 1 3026 Mesoplasma 0 species 1 219745 441 Mesoplasma tabanidae 0 1 138853 species 218 Mesoplasma lactucae 783 Mesoplasma florum 0 species 1 2151 species 216427 1 0 Mesoplasma chauliocola 408 1 324078 species 0 Mesoplasma coleopterae 391 Mesoplasma entomophilum 393 2149 1 species 0 Mesoplasma syrphidae 354 species 1 225999 0 2799557 2 no rank 0 581 Candidatus Izimaplasma 581 1 genus 1912503 2 0 1 580 no rank 2624196 1 0 Candidatus Izimaplasma sp. HR1 580 1541959 1 species 0 0 713063 2 no rank 1098 1911683 1 species 0 Tenericutes bacterium MZ-XQ 521 0 1911684 1 species 577 Tenericutes bacterium MO-XQ Actinobacteria 138129 1 phylum 201174 627 0 11 765 0 1752188 4 no rank 0 species 1848754 1 291 Actinobacteria bacterium IMCC19121 Actinobacteria bacterium IMCC25003 137 species 1848255 1 0 Actinobacteria bacterium IMCC26077 103 species 1 1848755 0 234 Actinobacteria bacterium IMCC26103 0 species 1848756 1 class 84995 6 8 0 Rubrobacteria 405 1 0 12 5 84996 order 1 397 Rubrobacterales Rubrobacteraceae 385 1 family 84997 4 6 0 genus 42255 3 3 0 Rubrobacter 379 1 Rubrobacter xylanophilus 221 species 1 49319 0 1 42256 species 0 Rubrobacter radiotolerans 155 1045 84992 6 class 0 84993 6 order 0 25 Acidimicrobiales 1 1045 family 2448023 2 0 771 1 771 Ilumatobacter 0 9 2 682522 genus 1 467094 species 0 Ilumatobacter coccineus 762 0 4 family 84994 3 249 1 Acidimicrobiaceae 245 1 Acidimicrobium 0 11 genus 53634 2 species 53635 1 0 Acidimicrobium ferrooxidans 234 class 28 84998 0 9 Coriobacteriia 2390 1 14 1643822 order 0 11 Eggerthellales 1 1563 Eggerthellaceae 1552 1 family 1643826 13 29 0 21 0 genus 3 644652 456 1 Gordonibacter 206 Gordonibacter urolithinfaciens 0 species 1335613 1 1841863 1 species 0 Gordonibacter massiliensis 229 233 0 1981050 1 genus Phoenicibacter massiliensis 233 species 1 1944646 0 genus 447020 1 0 98 0 446660 1 species 98 Adlercreutzia equolifaciens 1 126 Denitrobacterium 3 0 2 79603 genus 0 79604 1 species 123 Denitrobacterium detoxificans 0 1 84162 genus 93 93 Cryptobacterium curtum 0 84163 1 species 102 1 84108 genus 0 102 Slackia heliotrinireducens 0 species 84110 1 4 0 3 84111 genus 1 415 Eggerthella no rank 2648737 1 0 117 0 1 502558 species 117 Eggerthella sp. YY7918 Eggerthella lenta 294 species 84112 1 0 10 0 13 84999 order 1 818 Coriobacteriales Coriobacteriaceae 1 259 84107 5 family 3 0 102106 1 genus 0 76 species 1 74426 0 Collinsella aerofaciens 76 no rank 84113 1 0 81 0 1531429 1 species 81 Coriobacteriaceae bacterium 68-1-3 0 2 2 33870 genus 1 99 Coriobacterium species 1 33871 0 Coriobacterium glomerans 97 1 549 Atopobiaceae 0 7 7 1643824 family genus 1380 1 0 Atopobium 1 3 0 4 133925 genus 1 388 Olsenella 130 2638792 1 no rank 0 0 species 712411 1 130 Olsenella sp. oral taxon 807 Olsenella uli 100 133926 1 species 0 155 Olsenella sp. Marseille-P2300 0 species 1805478 1 genus 1 2767353 0 153 Atopobium parvulum 153 species 1 1382 0 Thermoleophilia 1217 1 class 5 1497346 2 0 Solirubrobacterales 1215 1 order 588673 4 0 7 family 3 320583 0 4 Conexibacteraceae 1208 1 1204 1 Conexibacter 0 4 genus 2 191494 1200 Conexibacter woesei 0 1 191495 species class 1760 577 0 447 Actinobacteria 132296 1 Corynebacteriales 30390 1 order 161 85007 153 0 0 no rank 697024 1 87 87 1847725 1 genus 0 1528099 1 species 0 Lawsonella clevelandensis 87 Tsukamurellaceae 596 1 family 4 85028 0 3 Tsukamurella 1 593 2060 3 genus 0 5 Tsukamurella tyrosinosolvens 388 species 57704 1 0 2061 1 species 0 Tsukamurella paurometabola 200 85029 4 family 0 4 Dietziaceae 1 427 1 423 Dietzia 0 4 37914 3 genus 0 no rank 2617939 1 286 0 1 712270 species 286 Dietzia sp. oral taxon 368 species 499555 1 0 Dietzia timorensis 133 1 118 Segniliparaceae 0 2 316606 3 family 116 1 Segniliparus 1 0 genus 286801 2 Segniliparus rotundus 115 species 1 286802 0 Gordoniaceae 1616 1 family 85026 9 0 2 11 0 2053 8 genus 1 1614 Gordonia species 1 84595 0 Gordonia polyisoprenivorans 209 species 1136941 1 0 Gordonia phthalatica 250 1004901 1 species 0 Gordonia iterans 181 Gordonia bronchialis 251 species 1 2054 0 no rank 2657482 2 0 452 0 1 337191 species 239 Gordonia sp. KTR9 species 1 2059875 0 Gordonia sp. YC-JH1 213 260 Gordonia terrae 0 2055 1 species Corynebacteriaceae 5993 1 family 1653 52 18 0 51 1716 genus 0 93 Corynebacterium 1 5975 1 1652495 species 0 Corynebacterium crudilactis 121 94 Corynebacterium pseudotuberculosis 0 species 1 1719 0 species 1 161899 75 Corynebacterium singulare 108 Corynebacterium resistens 0 species 258224 1 Corynebacterium diphtheriae 144 species 1 1717 0 Corynebacterium callunae 81 species 1 1721 0 Corynebacterium falsenii 102 species 108486 1 0 Corynebacterium aurimucosum 49 169292 1 species 0 0 1 146827 species 90 Corynebacterium simulans 0 species 92706 1 104 [Brevibacterium] flavum species 1050174 1 0 Corynebacterium epidermidicanis 57 72 Corynebacterium glaucum 0 species 187491 1 161879 1 species 0 Corynebacterium kroppenstedtii 38 349751 1 species 0 Corynebacterium marinum 162 105 Corynebacterium glyciniphilum 0 1 1404244 species 0 species 1 575200 159 Corynebacterium maris 0 1 1072256 species 505 Corynebacterium uterequi 1 42817 species 0 Corynebacterium argentoratense 80 Corynebacterium cystitidis 91 species 35757 1 0 102 Corynebacterium mustelae 0 species 1 571915 75 Corynebacterium phocae 0 1 161895 species 43770 1 species 0 Corynebacterium striatum 180 0 species 161896 1 60 Corynebacterium camporealensis species 1 1697 0 Corynebacterium ammoniagenes 66 0 38289 1 species 138 Corynebacterium jeikeium 401472 1 species 0 Corynebacterium ureicelerivorans 73 142 Corynebacterium terpenotabidum 0 species 1 89154 88 Corynebacterium stationis 0 species 1705 1 Corynebacterium vitaeruminis 149 1 38305 species 0 156978 1 species 0 Corynebacterium imitans 69 0 1230998 1 species 170 Corynebacterium frankenforstense 0 35755 1 species 135 Corynebacterium kutscheri 0 species 1121358 1 128 Corynebacterium doosanense Corynebacterium aquilae 106 203263 1 species 0 species 160386 1 0 Corynebacterium casei 96 147 no rank 2 2624378 0 species 1487956 1 0 Corynebacterium sp. ATCC 6931 63 0 1 702967 species 84 Corynebacterium sp. NML98-0116 species 1 191610 0 Corynebacterium atypicum 63 Corynebacterium urealyticum 102 species 43771 1 0 167 Corynebacterium halotolerans 0 225326 1 species 1 1718 species 0 Corynebacterium glutamicum 292 185 Corynebacterium variabile 0 species 1727 1 0 species 1 65058 108 Corynebacterium ulcerans 70 Corynebacterium flavescens 0 species 1 28028 116 Corynebacterium testudinoris 0 1 136857 species Corynebacterium sphenisci 172 species 191493 1 0 0 species 1223514 1 169 Corynebacterium humireducens 0 1408191 1 species 116 Corynebacterium deserti Corynebacterium efficiens 66 species 152794 1 0 0 1 1231000 species 95 Corynebacterium lactis 1 8745 Nocardiaceae 0 33 31 85025 family 1 2623 Nocardia 0 34 7 1817 genus 0 1 37330 species 288 Nocardia nova Nocardia farcinica 453 37329 1 species 0 Nocardia cyriacigeorgica 475 135487 1 species 0 Nocardia seriolae 347 species 37332 1 0 Nocardia terpenica 359 1 455432 species 0 0 species 37326 1 667 Nocardia brasiliensis 1 6089 Rhodococcus 147 0 23 1827 genus 0 species 1 103816 335 Rhodococcus pyridinivorans species 1833 1 0 Rhodococcus erythropolis 293 154 Rhodococcus qingshengii 0 species 1 334542 271 Rhodococcus rhodochrous 0 species 1 1829 394 Rhodococcus ruber 0 species 1830 1 1 37919 species 0 Rhodococcus opacus 870 212 Rhodococcus fascians 0 species 1 1828 Rhodococcus hoagii 238 1 43767 species 0 370 Rhodococcus aetherivorans 0 1 191292 species 0 no rank 192944 12 2404 146 Rhodococcus sp. WMMA185 0 1 679318 species 120 Rhodococcus sp. H-CA8f 0 1727214 1 species 143 Rhodococcus sp. 008 0 species 1 1723645 Rhodococcus sp. p52 261 species 1 935199 0 species 1033922 1 0 Rhodococcus sp. WB1 363 Rhodococcus sp. MTM3W5.2 362 species 1805827 1 0 0 species 1 1807790 129 Rhodococcus sp. BH4 Rhodococcus sp. 2G 218 1570939 1 species 0 141 Rhodococcus sp. YL-1 0 1045808 1 species Rhodococcus sp. PBTS 1 212 1 1653478 species 0 species 1564114 1 0 Rhodococcus sp. B7740 190 119 Rhodococcus sp. PBTS 2 0 species 1653479 1 0 species 132919 1 401 Rhodococcus jostii 1 12655 Mycobacteriaceae 0 48 56 1762 family genus 5 670516 0 1652 1578165 1 species 0 Mycobacterium saopaulense 132 159 Mycobacterium immunogenum 0 1 83262 species 0 species 1 1774 140 Mycobacterium chelonae species 1 1520670 0 Mycobacterium stephanolepidis 117 0 species 36809 1 1104 Mycobacterium abscessus genus 2 1073531 0 391 1 875328 species 0 Mycobacterium sinense 209 Mycobacterium terrae 182 1 1788 species 0 126 0 genus 1 697025 0 species 639313 1 126 Hoyosella subflava 1763 34 genus 0 368 Mycobacterium 1 6856 13 2642494 no rank 0 2657 species 1 1879023 0 Mycobacterium sp. djl-10 271 Mycobacterium sp. JLS 233 164757 1 species 0 218 Mycobacterium sp. YC-RL4 0 species 1 1682113 Mycobacterium sp. MOTT36Y 63 species 1168287 1 0 0 1 1273687 species 194 Mycobacterium sp. VKM Ac-1817D 1 189918 species 0 Mycobacterium sp. KMS 225 species 1 2051552 0 Mycobacterium sp. PYR15 200 0 species 1 1570328 206 Mycobacterium sp. NRRL B-3805 171 Mycobacterium sp. EPa45 0 species 1 1545728 1561223 1 species 0 Mycobacterium sp. QIA-37 133 Mycobacterium sp. JS623 307 212767 1 species 0 Mycobacterium sp. MCS 209 species 164756 1 0 1 1920667 species 0 Mycobacterium sp. WY10 227 0 species 29311 1 125 Mycobacterium haemophilum 261524 1 species 0 Mycobacterium liflandii 198 204 Mycobacterium kansasii 0 species 1 1768 0 2249310 1 species group 215 0 1 722731 species 215 Mycobacterium shigaense 194 Mycobacterium ulcerans 0 1 1809 species 0 species group 77643 4 456 1 360 Mycobacterium tuberculosis 138 0 1773 3 species Mycobacterium africanum 105 1 33894 biotype 0 Mycobacterium bovis 117 1765 1 biotype 0 Mycobacterium canettii 96 species 1 78331 0 species 482462 1 0 Mycobacterium dioxanotrophicus 272 451 Mycobacterium marinum 0 species 1781 1 Mycobacterium leprae 54 species 1769 1 0 1662 120793 8 species group 0 0 101 1767 4 species 1 505 Mycobacterium intracellulare Mycobacterium chimaera 222 1 222805 subspecies 0 1 1203599 subspecies 0 Mycobacterium yongonense 106 0 subspecies 35617 1 76 Mycobacterium indicus pranii 211 Mycobacterium colombiense 0 species 339268 1 Mycobacterium paraintracellulare 67 1 1138383 species 0 species 1 1764 0 Mycobacterium avium 723 156 Mycobacterium marseillense 0 1 701042 species genus 13 1866885 0 3582 Mycobacterium vaccae 323 1810 1 species 0 271 Mycobacterium vanbaalenii 0 110539 1 species species 1771 1 0 Mycobacterium phlei 375 Mycobacterium neoaurum 206 species 1795 1 0 species 1 36814 0 Mycobacterium rhodesiae 204 1797 1 species 0 Mycobacterium thermoresistibile 201 0 1 1791 species 286 Mycobacterium aurum species 1 134601 0 Mycobacterium goodii 281 Mycobacterium smegmatis 364 1772 1 species 0 758802 1 species 0 Mycobacterium litorale 186 Mycobacterium chubuense 296 species 1 1800 0 0 1804 1 species 409 Mycobacterium gilvum Mycobacterium fortuitum 180 species 1766 1 0 1 0 order 3 622452 424 1 Kineosporiales 1 423 Kineosporiaceae 0 13 2 83778 family 0 genus 33981 1 410 410 Kineococcus radiotolerans 0 1 131568 species order 82 85011 71 0 Streptomycetales 41885 1 81 2062 family 0 147 Streptomycetaceae 1 41814 Kitasatospora 1 2772 2063 5 genus 0 13 518 no rank 2633591 1 0 518 Kitasatospora sp. MMS16-BH015 0 species 1 2018025 Kitasatospora albolonga 1016 species 1 68173 0 species 1 2066 0 Kitasatospora setae 820 405 Kitasatospora aureofaciens 0 1894 1 species Streptomyces 1 38895 1883 75 genus 740 0 Streptomyces rubrolavendulae 335 species 285473 1 0 Streptomyces albireticuli 431 1 1940 species 0 0 species 1 68570 1479 Streptomyces albulus Streptomyces lydicus 1213 species 47763 1 0 362257 1 species 0 Streptomyces vietnamensis 556 0 species 1 1169025 374 Streptomyces pratensis 1398 2 1477431 species group 0 Streptomyces sampsonii 386 42239 1 species 0 Streptomyces coelicolor 1012 1 1902 species 0 0 1355015 1 species 342 Streptomyces pluripotens 0 species 146923 1 361 Streptomyces parvulus Streptomyces formicae 672 species 1616117 1 0 1 1888 species 0 Streptomyces albus 1052 408 Streptomyces fulvissimus 0 species 1 68202 Streptomyces cattleya 372 species 29303 1 0 0 species 75293 1 1228 Streptomyces autolyticus 0 1 1914 species 470 Streptomyces lavendulae Streptomyces sp. S10(2016) 363 1783515 1 species 0 0 species 1 68192 355 Streptomyces cyaneogriseus species 1935 1 0 Streptomyces violaceoruber 372 species 408015 1 0 Streptomyces xiamenensis 308 1437453 1 species 0 Streptomyces leeuwenhoekii 392 453 Streptomyces puniciscabiei 0 164348 1 species 1 1889 species 0 Streptomyces ambofaciens 507 1 193462 species 0 Streptomyces niveus 457 0 1950 1 species 319 Streptomyces peucetius 753 species group 2 629295 0 404 0 species subgroup 1482558 1 Streptomyces globisporus 404 1 1908 species 0 0 1482596 1 species subgroup 349 349 Streptomyces griseus 0 species 1911 1 species 1 1642299 0 Streptomyces alfalfae 535 species 1 92644 0 Streptomyces malaysiensis 525 0 1 1916 species 473 Streptomyces lividans species 1 1930 0 Streptomyces scabiei 530 species 1912 1 0 Streptomyces hygroscopicus 1053 0 54571 1 species 966 Streptomyces venezuelae 0 1 1038928 species 371 Streptomyces xinghaiensis 347 Streptomyces clavuligerus 0 species 1 1901 0 1969 1 species 340 Streptomyces chartreusis Streptomyces pristinaespiralis 384 38300 1 species 0 0 24 2593676 no rank 10956 444103 1 species 0 Streptomyces sp. CNQ-509 437 360 Streptomyces sp. Tue 6075 0 species 1 1661694 450 Streptomyces sp. fd1-xmd 0 1812480 1 species 1495638 1 species 0 Streptomyces sp. M56 713 283 Streptomyces sp. PAMC 26508 0 1265601 1 species 498 Streptomyces sp. P3 0 2135430 1 species 1 1984801 species 0 Streptomyces sp. CLI2509 434 465541 1 species 0 Streptomyces sp. Mg1 434 1 1972846 species 0 Streptomyces sp. Sge12 522 Streptomyces sp. S8 313 species 1837283 1 0 0 species 234612 1 343 Streptomyces sp. TN58 Streptomyces sp. 4F 369 1751294 1 species 0 500 Streptomyces sp. RTd22 0 species 1 1841249 0 1262452 1 species 553 Streptomyces sp. 769 0 species 1 1964449 612 Streptomyces sp. 3211 Streptomyces sp. CdTB01 511 species 1 1725411 0 545 Streptomyces sp. SAT1 0 1 1849967 species Streptomyces sp. CCM_MD2014 404 species 1561022 1 0 0 species 1 2094021 453 Streptomyces sp. WAC00288 405 Streptomyces sp. CFMR 7 0 1649184 1 species 1 1961713 species 0 Streptomyces sp. MOE7 432 Streptomyces sp. FR-008 584 species 206662 1 0 1 862751 species 0 Streptomyces sp. SirexAA-E 282 519 Streptomyces sp. CMB-StM0423 0 2059884 1 species 0 species 1 1971 485 Streptomyces noursei 0 species 1 1915 492 Streptomyces lincolnensis Streptomyces bingchenggensis 703 1 379067 species 0 417 Streptomyces griseochromogenes 0 species 1 68214 Streptomyces pactum 894 species 68249 1 0 Streptomyces violaceusniger 479 species 68280 1 0 species 67267 1 0 Streptomyces alboflavus 539 Streptomyces avermitilis 527 1 33903 species 0 species 1 2049881 0 Streptomyces sp. XZHG99 388 species 553510 1 0 Streptomyces gilvosporeus 501 495 Streptomyces reticuli 0 species 1 1926 0 1 1907 species 367 Streptomyces glaucescens Streptomyces collinus 418 species 42684 1 0 Propionibacteriales 4412 1 order 85009 33 24 0 2255 1 Nocardioidaceae 40 0 family 13 85015 0 4 genus 2 116071 215 1 Micropruina 0 species 75385 1 211 Micropruina glycogenica genus 1839 4 27 0 Nocardioides 933 1 343 0 1 2615069 no rank 343 Nocardioides sp. JS614 0 196162 1 species 192 Nocardioides sp. 78 0 species 1 2045452 371 Nocardioides dokdonensis 0 species 450734 1 1 330 Kribbella 0 15 182639 2 genus 315 Kribbella flavida 0 species 1 182640 4 0 genus 2 2040 290 1 Aeromicrobium 0 species 1 2041 286 Aeromicrobium erythreum 1 447 Pimelobacter 3 0 2044 2 genus species 2045 1 0 Pimelobacter simplex 444 2133 1 Propionibacteriaceae 0 28 family 19 31957 294 1 Cutibacterium 6 0 genus 1912216 4 species 1747 1 0 Cutibacterium acnes 94 0 33010 1 species 113 Cutibacterium avidum 81 Cutibacterium granulosum 0 species 1 33011 1 254 Acidipropionibacterium 1 0 1912215 2 genus species 1748 1 0 Acidipropionibacterium acidipropionici 253 2 0 genus 29404 2 209 1 Microlunatus 0 1 29405 species 207 Microlunatus phosphovorus 791 1 Tessaracoccus 13 0 genus 72763 5 155 Tessaracoccus flavus 0 species 1 1610493 no rank 2635419 1 0 215 Tessaracoccus sp. T2.5-30 215 1909732 1 species 0 1 399497 species 0 Tessaracoccus flavescens 174 Tessaracoccus aquimaris 234 species 1 1332264 0 147 genus 2801844 1 0 147 Pseudopropionibacterium propionicum 0 species 1 1750 0 1 genus 3 1743 298 1 Propionibacterium 259 Propionibacterium freudenreichii 0 species 1 1744 38 0 1 2608905 no rank Propionibacterium sp. oral taxon 193 38 species 1 671223 0 genus 203133 1 0 112 0 no rank 2633994 1 112 1 1871034 species 0 Propionimicrobium sp. Marseille-P3275 112 0 21 40 85010 order 1 11937 Pseudonocardiales 0 119 family 39 2070 11916 1 Pseudonocardiaceae genus 142577 1 0 320 0 species 1 530584 320 Prauserella marina 40566 3 genus 0 14 Actinosynnema 1 1067 494 Actinosynnema pretiosum 0 1 42197 species species 1 40567 0 Actinosynnema mirum 559 1813 7 genus 0 38 Amycolatopsis 1 2825 738 0 2 2618356 no rank species 1 1911175 0 Amycolatopsis sp. BJA-103 379 359 Amycolatopsis sp. AA4 0 1 1896961 species 0 1 1814 species 390 Amycolatopsis methanolica Amycolatopsis japonica 358 species 208439 1 0 Amycolatopsis mediterranei 540 species 33910 1 0 761 Amycolatopsis orientalis 0 1 31958 species genus 1847 8 59 0 Pseudonocardia 3035 1 2460 no rank 6 2619320 0 0 1641402 1 species 333 Pseudonocardia sp. HH130629-09 0 1688404 1 species 435 Pseudonocardia sp. EC080610-09 Pseudonocardia sp. HH130630-07 426 species 1 1690815 0 0 1096868 1 species 376 Pseudonocardia sp. EC080625-04 Pseudonocardia sp. EC080619-01 410 species 1096856 1 0 0 445576 1 species 480 Pseudonocardia sp. AL041005-10 Pseudonocardia dioxanivorans 516 240495 1 species 0 1 1729 Actinoalloteichus 22 0 6 65496 genus 1 1612552 species 0 Actinoalloteichus sp. ADI127-7 460 327 Actinoalloteichus hoggarensis 0 1470176 1 species 0 no rank 2644606 2 729 363 Actinoalloteichus sp. GBA129-24 0 species 1612551 1 0 species 2072503 1 366 Actinoalloteichus sp. AHMU CJ021 0 340345 1 species 191 Actinoalloteichus hymeniacidonis 0 8 genus 2 43356 397 1 Kutzneria 43357 1 species 0 Kutzneria albida 389 0 165301 1 genus 515 515 Lentzea guizhouensis 0 species 1 1586287 genus 2029 2 1 0 Kibdelosporangium 459 1 Kibdelosporangium phytohabitans 458 860235 1 species 0 5 0 genus 674734 2 347 1 Alloactinosynnema 0 1 2636053 no rank 342 0 species 1 1653480 342 Alloactinosynnema sp. L-07 genus 2071 2 0 2 Saccharothrix 453 1 Saccharothrix espanaensis 451 103731 1 species 0 418 1 Saccharopolyspora 5 0 genus 2 1835 413 Saccharopolyspora erythraea 0 species 1 1836 genus 1851 2 1 0 Saccharomonospora 232 1 231 Saccharomonospora viridis 0 species 1852 1 1312 1 Catenulisporales 0 5 order 4 414714 1307 1 Catenulisporaceae 0 13 family 3 414877 1294 1 Catenulispora 2 0 genus 414878 2 Catenulispora acidiphila 1292 species 1 304895 0 0 21 order 85012 15 2935 1 Streptosporangiales Thermomonosporaceae 334 1 family 3 2012 1 0 0 7 2 2019 genus 1 333 Thermomonospora 326 Thermomonospora curvata 0 2020 1 species 3 0 83676 6 family 1 1159 Nocardiopsaceae 150 1 83677 genus 0 0 2021 1 species 150 Thermobifida fusca genus 4 2013 0 3 Nocardiopsis 1006 1 457 Nocardiopsis dassonvillei 0 species 1 2014 Nocardiopsis gilva 319 species 280236 1 0 53437 1 species 0 Nocardiopsis alba 227 7 0 family 2004 5 1421 1 Streptosporangiaceae genus 2 83681 0 4 Nonomuraea 834 1 830 0 1 2593643 no rank 0 1 1909395 species 830 Nonomuraea sp. ATCC 55076 4 0 genus 2000 2 580 1 Streptosporangium 0 2001 1 species 576 Streptosporangium roseum 0 9 order 26 85004 2602 1 Bifidobacteriales 0 12 31953 25 family 1 2593 Bifidobacteriaceae 1 2061 Bifidobacterium 25 0 1678 19 genus 0 1 1684 species 71 Bifidobacterium asteroides 0 species 216816 1 277 Bifidobacterium longum 69 Bifidobacterium thermophilum 0 species 1 33905 species 1 1685 0 Bifidobacterium breve 207 Bifidobacterium choerinum 148 1 35760 species 0 119 Bifidobacterium bifidum 0 species 1 1681 species 1 638619 0 Bifidobacterium actinocoloniiforme 127 0 species 28025 1 145 Bifidobacterium animalis species 1687 1 0 Bifidobacterium coryneforme 48 0 1 1680 species 90 Bifidobacterium adolescentis Bifidobacterium catenulatum 1 131 2 1686 species 47 0 1 630129 subspecies 0 Bifidobacterium kashiwanohense 84 Bifidobacterium scardovii 123 1 158787 species 0 Bifidobacterium pseudolongum 209 1694 1 species 0 species 1691 1 0 Bifidobacterium indicum 54 0 1689 1 species 77 Bifidobacterium dentium Bifidobacterium pseudocatenulatum 46 species 28026 1 0 Bifidobacterium angulatum 95 species 1 1683 0 Gardnerella 1 387 2 2701 genus 0 2 species 1 2702 0 Gardnerella vaginalis 385 60 genus 196082 1 0 Parascardovia denticolens 60 78258 1 species 0 Scardovia 1 73 2 196081 genus 0 2 0 1 78259 species 71 Scardovia inopinata Micromonosporales 5369 1 order 20 85008 8 0 1 5361 Micromonosporaceae 0 84 28056 19 family Verrucosispora 1 1 84593 genus 0 Salinispora 1 442 168694 3 genus 12 0 0 1 168695 species 226 Salinispora tropica 1 168697 species 0 Salinispora arenicola 204 2289 1 Actinoplanes 34 0 genus 1865 6 Actinoplanes missouriensis 436 1 1866 species 0 0 196914 1 species 425 Actinoplanes friuliensis 3 2626549 no rank 0 1394 Actinoplanes sp. SE50/110 470 species 134676 1 0 Actinoplanes sp. N902-109 454 1 649831 species 0 470 Actinoplanes sp. SE50 0 species 1 2033844 1 1285 Micromonospora 17 0 1873 4 genus species 1 1003110 0 Verrucosispora maris 381 435 2617518 1 no rank 0 0 species 1 648999 435 Micromonospora sp. L5 0 47850 1 species 452 Micromonospora aurantiaca 673534 4 genus 0 17 Plantactinospora 1 1260 1243 0 3 2631981 no rank 2024580 1 species 0 Plantactinospora sp. KBS50 420 423 Plantactinospora sp. BB1 0 species 2071627 1 1 2108470 species 0 Plantactinospora sp. BC1 400 0 14 12 2039638 order 1 3301 Candidatus Nanopelagicales family 11 2162846 0 3287 0 12 622681 7 genus 1 1668 Candidatus Planktophila 181 Candidatus Planktophila sulfonica 0 1 1884904 species Candidatus Planktophila dulcis 286 species 1884914 1 0 267 Candidatus Planktophila versatilis 0 species 1884905 1 Candidatus Planktophila limnetica 306 species 573600 1 0 286 Candidatus Planktophila vernalis 0 species 1884907 1 330 Candidatus Planktophila lacus 0 species 1 1884913 Candidatus Nanopelagicus 1 1619 4 2039639 genus 0 9 Candidatus Nanopelagicus limnes 480 1 1884634 species 0 1884915 1 species 0 Candidatus Nanopelagicus hibericus 479 species 1884916 1 0 Candidatus Nanopelagicus abundans 651 197 order 622450 3 0 Actinopolysporaceae 1 197 3 622451 family 1 0 1 196 Actinopolyspora 0 6 2 1849 genus Actinopolyspora erythraea 190 414996 1 species 0 0 1 order 7 1643682 1017 1 Geodermatophilales Geodermatophilaceae 1 1016 85030 6 family 0 35 1 321 Modestobacter 2 0 2 88138 genus 0 477641 1 species 319 Modestobacter marinus 1 291 Blastococcus 5 0 2 38501 genus Blastococcus saxobsidens 286 1 138336 species 0 genus 1860 1 0 369 species 1861 1 0 Geodermatophilus obscurus 369 312 0 no rank 52018 1 312 Actinobacteria bacterium IMCC26256 0 species 1650658 1 298 order 3 1643684 0 85031 3 family 0 3 Nakamurellaceae 1 298 2 53460 genus 0 3 Nakamurella 1 295 53461 1 species 0 Nakamurella multipartita 292 order 85013 7 23 0 Frankiales 2285 1 1 2262 Frankiaceae 18 0 74712 6 family 1854 5 genus 0 10 Frankia 1 2244 species 1 298654 0 Frankia inefficax 474 Frankia casuarinae 409 species 1 106370 0 1 1859 species 0 Frankia alni 867 0 no rank 1 2632575 484 484 Frankia sp. EAN1pec 0 species 298653 1 1704 16 2037 order 0 Actinomycetaceae 1704 1 family 16 2049 0 27 78 0 2529408 1 genus 78 Actinomyces meyeri 0 52773 1 species genus 28263 2 0 2 Arcanobacterium 100 1 1 28264 species 0 Arcanobacterium haemolyticum 98 90 0 genus 2050 1 90 Mobiluncus curtisii 0 2051 1 species 135 0 genus 1 1069494 0 species 1 1661 135 Trueperella pyogenes Actinomyces 1187 1 genus 9 1654 0 27 Actinomyces sp. VUL4_3 52 species 1 1912795 0 0 species 1852377 1 60 Actinomyces pacaensis Actinomyces oris 139 species 1 544580 0 species 1 111015 0 Actinomyces radicidentis 278 0 species 1960083 1 114 Actinomyces gaoshouyii 0 no rank 3 2609248 517 164 Actinomyces sp. Chiba101 0 species 1 1851395 Actinomyces sp. oral taxon 414 217 species 1 712122 0 Actinomyces sp. oral taxon 897 136 species 2081702 1 0 genus 1 1653174 0 87 species 1 59505 0 Actinotignum schaalii 87 0 3 1643683 order 149 85032 3 family 0 2 Acidothermaceae 1 149 147 1 Acidothermus 0 4 genus 2 28048 143 Acidothermus cellulolyticus 0 1 28049 species 334 85014 3 order 0 Glycomycetaceae 1 334 3 85034 family 22 0 312 1 Stackebrandtia 10 0 genus 2 283810 302 Stackebrandtia nassauensis 0 1 283811 species 128 0 order 85006 135 20743 1 Micrococcales 1 4515 Micrococcaceae 48 0 1268 36 family 164 0 genus 1269 1 1270 1 species 0 Micrococcus luteus 164 Paenarthrobacter 124 1 genus 2 1742992 2 0 43663 1 species 0 Paenarthrobacter aurescens 122 2 32207 genus 0 186 123 Rothia mucilaginosa 0 species 1 43675 species 1 2047 0 Rothia dentocariosa 63 1 505 Kocuria 0 1 57493 4 genus species 71999 1 0 Kocuria palustris 148 species 446860 1 0 Kocuria flava 240 species 1 72000 0 Kocuria rhizophila 116 1645 1 genus 0 69 Renibacterium salmoninarum 69 species 1 1646 0 0 3 genus 2 1868332 109 1 Neomicrococcus 106 Neomicrococcus aestuarii 0 556325 1 species 1 2343 Arthrobacter 36 0 15 1663 genus 0 235627 12 no rank 1860 Arthrobacter sp. ATCC 21022 106 species 1771959 1 0 Arthrobacter sp. PAMC 25486 123 1 1494608 species 0 0 1 1690248 species 125 Arthrobacter sp. LS16 Arthrobacter sp. FB24 139 290399 1 species 0 194 Arthrobacter sp. U41 0 species 1 1849032 Arthrobacter sp. Rue61a 94 1 1118963 species 0 Arthrobacter sp. PGP41 302 2079227 1 species 0 0 species 1806905 1 137 Arthrobacter sp. ZXY-2 1 1357915 species 0 Arthrobacter sp. QXT-31 180 1 1704044 species 0 Arthrobacter sp. ERGS1:01 174 species 1 1652545 0 Arthrobacter sp. YC-RL1 157 129 Arthrobacter sp. YN 0 species 1 2020486 0 656366 1 species 309 Arthrobacter alpinus 138 Arthrobacter crystallopoietes 0 1 37928 species 0 1 2078575 genus 86 0 1 1618207 species 86 Arthrobacter sp. IHBB 11108 0 2 genus 1742993 4 440 1 Pseudarthrobacter Pseudarthrobacter phenanthrenivorans 160 361575 1 species 0 146 Pseudarthrobacter chlorophenolicus 0 1 85085 species 132 Pseudarthrobacter sulfonivorans 0 1 121292 species 254 genus 1 596707 0 Sinomonas atrocyanea 254 species 37927 1 0 2 1742989 genus 3 0 Glutamicibacter 1 187 1 256701 species 0 Glutamicibacter arilaitensis 184 family 85021 9 0 10 Intrasporangiaceae 1119 1 Serinicoccus 1 311 265976 2 genus 0 3 0 1758689 1 species 308 Serinicoccus sp. JLT9 Intrasporangium 259 1 genus 2 53357 0 3 species 1 53358 0 Intrasporangium calvum 256 2 267408 genus 2 0 Arsenicicoccus 1 268 0 2663846 1 no rank 266 species 1 1658671 0 Arsenicicoccus sp. oral taxon 190 266 2 53457 genus 7 0 Janibacter 1 271 species 1 857417 0 Janibacter indicus 264 71 2 85022 family 0 genus 2 43673 0 4 Jonesia 71 1 species 43674 1 0 Jonesia denitrificans 67 85016 6 family 6 0 Cellulomonadaceae 1 1279 1273 1 Cellulomonas 21 0 genus 1707 5 337 Cellulomonas flavigena 0 1 1711 species Cellulomonas gilvus 273 11 1 species 0 2620175 1 no rank 0 313 Cellulomonas sp. PSBB021 313 species 2003551 1 0 Cellulomonas fimi 329 species 1 1708 0 104 0 85018 1 family 104 genus 1 1862 0 104 Dermatophilus congolensis 0 species 1863 1 0 71 85023 44 family 1 8102 Microbacteriaceae 24 0 6 1573 genus 1 1180 Clavibacter 251 0 5 28447 species 1 1156 Clavibacter michiganensis Clavibacter sepedonicus 275 1 31964 subspecies 0 subspecies 31963 1 0 Clavibacter nebraskensis 189 Clavibacter insidiosus 205 subspecies 1 33014 0 subspecies 1 1874630 0 Clavibacter capsici 236 389 1 Cryobacterium 3 0 genus 3 69578 species 670052 1 0 Cryobacterium arcticum 198 188 no rank 1 2649013 0 1 1978566 species 0 Cryobacterium sp. LW097 188 genus 33882 14 55 0 Microbacterium 2866 1 1 300019 species 0 Microbacterium paludicola 218 0 84292 1 species 212 Microbacterium chocolatum species 2033 1 0 Microbacterium testaceum 266 1710 8 2609290 no rank 0 species 1916917 1 0 Microbacterium sp. 1.5R 184 228 Microbacterium sp. XT11 0 367477 1 species Microbacterium sp. No. 7 359 species 1 1714373 0 0 species 1795053 1 182 Microbacterium sp. PAMC 28756 0 species 1906742 1 266 Microbacterium sp. BH-3-3-3 Microbacterium sp. CGR1 172 species 1696072 1 0 Microbacterium sp. TPU 3598 148 species 1 1938334 0 Microbacterium sp. str. 'China' 171 1 2103230 species 0 species 1 162426 0 Microbacterium hominis 235 Microbacterium aurum 170 36805 1 species 0 103 0 1 1705353 genus Aurantimicrobium minutum 103 1 708131 species 0 3 33886 genus 0 1 Rathayibacter 1 397 species 1 33888 0 Rathayibacter tritici 224 172 Rathayibacter toxicus 0 species 145458 1 433 0 1 110932 genus species 1575 1 0 Leifsonia xyli 433 447237 1 genus 0 615 615 0 no rank 1 2626248 1795630 1 species 0 Frondihabitans sp. PAMC 28766 615 83 0 1434032 1 genus species 1 1159327 0 Pontimonas salivibrio 83 genus 4 2034 0 10 Curtobacterium 785 1 0 no rank 2 257496 518 257 Curtobacterium sp. MR_MD2014 0 1 1561023 species 261 Curtobacterium sp. BH-2-1-1 0 1905847 1 species 1 69373 species 0 Curtobacterium pusillum 257 33877 2 genus 6 0 Agromyces 1 307 Agromyces aureus 301 1 453304 species 0 222 0 1 518733 genus Microterricola viridarii 222 1 412690 species 0 207 0 no rank 3 1655488 207 clade 1655489 3 0 Rhodoluna 207 1 genus 3 529883 4 0 0 1 529884 species 114 Rhodoluna lacicola 0 535712 1 species 89 Candidatus Rhodoluna planktonica Microcella 1 166 337004 2 genus 1 0 species 1 279828 0 Microcella alkaliphila 165 0 1 1759331 genus 278 species 1619308 1 0 Cnuibacter physcomitrellae 278 family 2 125316 0 370 genus 2 84756 2 0 Beutenbergia 370 1 1 84757 species 0 Beutenbergia cavernae 368 10 85020 family 13 0 Dermabacteraceae 1 1908 Brachybacterium 1 1680 6 43668 genus 10 0 0 species 1 2017484 726 Brachybacterium sp. VM2412 271 no rank 1 2623841 0 0 species 1903186 1 271 Brachybacterium sp. P6-10-X1 Brachybacterium faecium 233 species 1 43669 0 2017485 1 species 0 Brachybacterium sp. VR2415 197 243 Brachybacterium ginsengisoli 0 species 1 1331682 97 0 genus 1 36739 Dermabacter vaginalis 97 species 1 1630135 0 118 1 Devriesea 19 0 genus 472568 2 0 species 472569 1 99 Devriesea agamarum 91 0 no rank 2 577468 0 4 2038 2 genus 1 91 Tropheryma 87 Tropheryma whipplei 0 species 1 2039 3 85019 family 3 0 Brevibacteriaceae 1 323 0 2 2 1696 genus 1 320 Brevibacterium 318 Brevibacterium linens 0 species 1703 1 Promicromonosporaceae 1742 1 family 85017 9 10 0 Cellulosimicrobium 1 759 3 157920 genus 0 7 1 2624466 no rank 0 393 Cellulosimicrobium sp. TH-20 393 species 1980001 1 0 0 1 1710 species 359 Cellulosimicrobium cellulans Isoptericola 621 1 genus 3 254250 2 0 species 139208 1 0 Isoptericola variabilis 276 Isoptericola dokdonensis 343 species 1 372663 0 352 1 Xylanimonas 0 1 genus 2 186188 351 Xylanimonas cellulosilytica 0 186189 1 species Dermacoccaceae 651 1 family 145357 7 7 0 2 745364 genus 1 0 Luteipulveratus 1 259 species 1 571913 0 Luteipulveratus mongoliensis 258 3 0 genus 57495 2 213 1 Dermacoccus 210 Dermacoccus nishinomiyaensis 0 1 1274 species Kytococcus 1 172 57499 2 genus 0 9 163 Kytococcus sedentarius 0 species 1276 1 3 145360 family 0 1 Sanguibacteraceae 1 340 4 0 genus 2 60919 339 1 Sanguibacter 0 1 60920 species 335 Sanguibacter keddieii 0 2 1643818 no rank 243 0 3 2 147067 genus 1 243 Thermobispora Thermobispora bispora 240 species 2006 1 0 0 no rank 1859062 2 130 1 130 Thermobaculum 1 0 262406 2 genus 166501 1 species 0 Thermobaculum terrenum 129 phylum 667 1239 69 0 Firmicutes 244804 1 1 4029 Tissierellia 0 13 15 1737404 class 422 1737407 2 no rank 0 Ezakiella 1 422 1582879 2 genus 2 0 Ezakiella massiliensis 420 1 1852374 species 0 0 7 order 1737405 12 3594 1 Tissierellales 0 18 10 1570339 family 1 2741 Peptoniphilaceae genus 543311 1 0 756 species 1 33033 0 Parvimonas micra 756 1 457 Peptoniphilus 0 10 2 162289 genus 0 no rank 1 2637196 447 Peptoniphilus sp. ING2-D1G 447 1 1912856 species 0 805 1 Anaerococcus 0 1 genus 165779 3 386 Anaerococcus mediterraneensis 0 species 1 1870984 0 species 33034 1 418 Anaerococcus prevotii 0 2 genus 150022 2 588 1 Finegoldia 586 Finegoldia magna 0 species 1260 1 117 1 1161127 genus 0 117 Murdochiella vaginalis 0 1852373 1 species 846 0 family 1 2042895 0 genus 1 1505664 846 Gottschalkia acidurici 846 1 1556 species 0 142430 1 Bacilli 0 128 class 420 91061 order 186826 163 0 116 Lactobacillales 44351 1 family 19 81852 6 0 Enterococcaceae 6064 1 2 0 genus 33969 2 614 1 Melissococcus 612 Melissococcus plutonius 0 species 33970 1 Vagococcus 1 790 2737 3 genus 5 0 519472 1 species 0 Vagococcus teuberi 388 Vagococcus penaei 397 species 633807 1 0 0 51668 1 genus 478 Tetragenococcus halophilus 478 51669 1 species 0 1350 12 genus 0 49 Enterococcus 1 4176 species 1 417368 0 Enterococcus thailandicus 383 Enterococcus mundtii 324 53346 1 species 0 0 37734 1 species 254 Enterococcus casseliflavus 0 species 1352 1 686 Enterococcus faecium 1 1354 species 0 Enterococcus hirae 433 Enterococcus faecalis 629 1 1351 species 0 368 Enterococcus durans 0 53345 1 species 0 species 1 2005703 356 Enterococcus wangshanyuanii 3 2608891 no rank 0 694 2060307 1 species 0 Enterococcus sp. FDAARGOS_375 269 224 Enterococcus sp. FDAARGOS_163 0 species 1 2060306 0 2057791 1 species 201 Enterococcus sp. CR-Ec1 Aerococcaceae 1 1132 8 186827 family 0 7 Aerococcus 1125 1 genus 7 1375 0 8 0 1 87541 species 181 Aerococcus christensenii 155 Aerococcus urinaehominis 0 128944 1 species 249 Aerococcus urinaeequi 0 species 1 51665 203 Aerococcus urinae 0 species 1376 1 Aerococcus sanguinicola 142 species 1 119206 0 1 1377 species 0 Aerococcus viridans 187 0 263855 1 no rank 360 0 species 1993866 1 360 Lactobacillales bacterium 1 14293 Streptococcaceae 0 33 1300 49 family 43 1301 genus 130 0 Streptococcus 1 11648 621 species group 2 119603 0 species 1 1336 0 Streptococcus equi 367 species 1334 1 0 Streptococcus dysgalactiae 254 364 Streptococcus oralis 0 species 1 1303 144 Streptococcus marmotae 0 species 1 1825069 Streptococcus acidominimus 190 1326 1 species 0 species 197614 1 0 Streptococcus pasteurianus 223 0 1814128 1 species 146 Streptococcus halotolerans 45634 1 species 0 Streptococcus cristatus 120 1070 7 2608887 no rank 0 species 1 1156431 0 Streptococcus sp. I-G2 117 species 1 1319 0 Streptococcus sp. 'group B' 351 1 712633 species 0 Streptococcus sp. oral taxon 431 126 0 species 1 1156433 118 Streptococcus sp. I-P16 103 Streptococcus sp. NPS 308 0 1902136 1 species species 1839799 1 0 Streptococcus sp. FDAARGOS_192 148 107 Streptococcus sp. A12 0 species 1 1759399 Streptococcus mitis 366 1 28037 species 0 0 1349 1 species 322 Streptococcus uberis 1111 0 species group 671232 3 0 1328 1 species 479 Streptococcus anginosus 0 species 1338 1 441 Streptococcus intermedius 0 species 1 76860 191 Streptococcus constellatus Streptococcus parauberis 347 1348 1 species 0 181 Streptococcus parasanguinis 0 1318 1 species species 150055 1 0 Streptococcus lutetiensis 269 species 1 102684 0 Streptococcus infantarius 396 1 1309 species 0 Streptococcus mutans 326 Streptococcus pyogenes 471 species 1 1314 0 species 1 1346 0 Streptococcus iniae 208 0 1302 1 species 424 Streptococcus gordonii 128 Streptococcus equinus 0 species 1335 1 0 1 1308 species 366 Streptococcus thermophilus Streptococcus macedonicus 227 species 1 59310 0 116 Streptococcus sanguinis 0 species 1305 1 692 Streptococcus agalactiae 0 1311 1 species 1313 1 species 0 Streptococcus pneumoniae 333 0 species 1 315405 461 Streptococcus gallolyticus 0 1307 1 species 620 Streptococcus suis 172 Streptococcus pantholopis 0 1811193 1 species 124 Streptococcus himalayensis 0 species 1 1888195 194 Streptococcus pluranimalium 0 species 1 82348 169 Streptococcus merionis 0 1 400065 species 0 species 1 257758 140 Streptococcus pseudopneumoniae Streptococcus salivarius 477 1304 1 species 0 Lactococcus 2612 1 genus 1357 5 2 0 309 Lactococcus piscium 0 1364 1 species 1358 1 species 0 Lactococcus lactis 1722 0 1 1366 species 169 Lactococcus raffinolactis 0 1 1363 species 410 Lactococcus garvieae 15833 1 Lactobacillaceae 0 23 family 58 33958 520 2767889 2 genus 0 297 Lactobacillus backii 0 1 375175 species Lactobacillus coryniformis 223 1610 1 species 0 1911 0 genus 2767879 6 Lactobacillus heilongjiangensis 255 species 1 1074467 0 Lactobacillus allii 382 1 1847728 species 0 0 1007676 1 species 353 Lactobacillus ginsenosidimutans 0 species 1 1612 284 Lactobacillus farciminis 0 species 1 392416 326 Lactobacillus crustorum Lactobacillus alimentarius 311 1 1602 species 0 704 2767881 2 genus 0 313 Lactobacillus sanfranciscensis 0 species 1 1625 1 53444 species 0 Lactobacillus lindneri 391 16 1578 genus 0 120 Lactobacillus 1 5143 Lactobacillus acidophilus 293 1 1579 species 0 322 Lactobacillus amylovorus 0 1604 1 species Lactobacillus delbrueckii 364 1584 1 species 0 835 2620435 4 no rank 0 137 Lactobacillus sp. D1501 0 1 2108362 species 0 species 1 2099788 195 Lactobacillus sp. CBA3605 species 1545702 1 0 Lactobacillus sp. wkB8 324 Lactobacillus sp. CBA3606 179 1 2099789 species 0 Lactobacillus gallinarum 249 species 1 52242 0 331 Lactobacillus jensenii 0 species 1 109790 species 267818 1 0 Lactobacillus kefiranofaciens 243 0 1 1600 species 204 Lactobacillus acetotolerans 0 83683 1 species 186 Lactobacillus amylolyticus 725 Lactobacillus gasseri 0 1 1596 species 0 1 33959 species 720 Lactobacillus johnsonii 0 species 1 1587 551 Lactobacillus helveticus 1542 0 4 2767887 genus 1056 Lactobacillus salivarius 0 1624 1 species 138 Lactobacillus agilis 0 1 1601 species 0 89059 1 species 229 Lactobacillus acidipiscis 0 species 1 1623 119 Lactobacillus ruminis 0 2 2767885 genus 599 Lactobacillus sakei 368 1599 1 species 0 Lactobacillus curvatus 231 species 28038 1 0 0 2767893 3 genus 477 225 Lactobacillus curieae 0 1 1138822 species 0 1 1581 species 126 Lactobacillus buchneri Lactobacillus parabuchneri 126 species 152331 1 0 195 genus 2767877 1 0 0 1 148814 species 195 Lactobacillus kunkeei 256 genus 2767890 1 0 Lactobacillus hokkaidonensis 256 species 1193095 1 0 961 3 2742598 genus 0 Lactobacillus mucosae 135 97478 1 species 0 1613 1 species 0 Lactobacillus fermentum 152 0 1598 1 species 674 Lactobacillus reuteri genus 2759736 3 0 727 0 species 1 1597 261 Lactobacillus paracasei 0 1 1582 species 279 Lactobacillus casei 187 Lactobacillus rhamnosus 0 1 47715 species 0 2767876 1 genus 109 Lactobacillus amylophilus 109 1 1603 species 0 5 0 1253 6 genus 1 1348 Pediococcus Pediococcus claussenii 305 1 187452 species 0 0 species 1 114090 232 Pediococcus inopinatus 159 1 1670797 species group 0 species 1 1254 0 Pediococcus acidilactici 159 251 Pediococcus damnosus 0 species 51663 1 396 Pediococcus pentosaceus 0 1 1255 species 863 0 genus 2767842 3 125 Lactobacillus paraplantarum 0 60520 1 species species 1590 1 0 Lactobacillus plantarum 612 0 species 1 1589 126 Lactobacillus pentosus genus 1 2767892 0 118 Lactobacillus paracollinoides 118 species 1 240427 0 337 3 2767886 genus 0 0 1 1580 species 200 Lactobacillus brevis species 637971 1 0 Lactobacillus koreensis 82 Lactobacillus zymae 55 1 267363 species 0 0 5 family 17 81850 3509 1 Leuconostocaceae 1 1076 Weissella 7 0 6 46255 genus 1631871 1 species 0 Weissella jogaejeotgali 212 163 Weissella ceti 0 759620 1 species 172 Weissella cibaria 0 1 137591 species Weissella koreensis 259 1 165096 species 0 Weissella paramesenteroides 263 species 1 1249 0 9 1243 genus 14 0 Leuconostoc 1 2140 0 1 1245 species 496 Leuconostoc mesenteroides Leuconostoc garlicum 85 1 255248 species 0 0 species 1 1246 108 Leuconostoc lactis 0 no rank 1 2685106 229 979982 1 species 0 Leuconostoc sp. C2 229 Leuconostoc citreum 186 species 1 33964 0 483 Leuconostoc gelidum 0 species 1244 1 species 1 1252 0 Leuconostoc carnosum 336 Leuconostoc kimchii 203 species 1 136609 0 0 46254 1 genus 288 0 1 1247 species 288 Oenococcus oeni 1 3044 Carnobacteriaceae 0 10 186828 10 family 10 0 genus 2747 5 1934 1 Carnobacterium 755 no rank 2 257487 0 Carnobacterium sp. CP1 289 species 1 1564681 0 466 Carnobacterium sp. 17-4 0 species 1 208596 1 147709 species 0 Carnobacterium inhibens 462 707 Carnobacterium maltaromaticum 0 1 2751 species 1 650 Jeotgalibaca 3 0 3 1470540 genus 0 708126 1 species 271 Jeotgalibaca dankookensis 376 0 no rank 2621505 1 0 1903686 1 species 376 Jeotgalibaca sp. PTS2502 450 0 genus 191769 1 450 0 1 2632303 no rank 450 Marinilactibacillus sp. 15R 0 1911586 1 species 1 97951 Bacillales 245 0 256 1385 order 1 11525 Paenibacillaceae 0 28 45 186822 family 1 1339 Brevibacillus 0 6 55080 4 genus 0 1393 1 species 369 Brevibacillus brevis 250 Brevibacillus formosus 0 species 1 54913 Brevibacillus laterosporus 714 species 1465 1 0 0 no rank 85151 3 495 Aneurinibacillus 495 1 genus 3 55079 0 2 1 2642329 no rank 0 282 0 species 1450761 1 282 Aneurinibacillus sp. XH2 1500254 1 species 0 Aneurinibacillus soli 211 1 9490 Paenibacillus 66 0 44249 36 genus 136 Paenibacillus yonginensis 0 species 1462996 1 217 Paenibacillus kribbensis 0 species 172713 1 386 Paenibacillus larvae 0 species 1 1464 3067 0 no rank 185978 13 Paenibacillus sp. FSL R5-0912 153 1536771 1 species 0 species 1 2069255 0 Paenibacillus sp. lzh-N1 216 1536775 1 species 0 Paenibacillus sp. FSL H7-0737 305 0 species 1 1536774 201 Paenibacillus sp. FSL H7-0357 Paenibacillus sp. BIHB4019 236 1870819 1 species 0 Paenibacillus sp. Y412MC10 129 species 1 481743 0 Paenibacillus sp. FSL R5-0345 349 1536770 1 species 0 species 324057 1 0 Paenibacillus sp. JDR-2 190 0 species 1536772 1 178 Paenibacillus sp. FSL R7-0273 0 1 1536769 species 269 Paenibacillus sp. FSL P4-0081 Paenibacillus sp. IHBB 10380 504 species 1566358 1 0 0 species 1 1695218 159 Paenibacillus sp. 32O-W 178 Paenibacillus sp. FSL R7-0331 0 1 1536773 species Paenibacillus donghaensis 482 414771 1 species 0 Paenibacillus ihbetae 148 species 1870820 1 0 species 1 365617 0 Paenibacillus sabinae 117 Paenibacillus durus 359 species 44251 1 0 143 Paenibacillus naphthalenovorans 0 species 162209 1 0 528191 1 species 221 Paenibacillus xylanexedens Paenibacillus mucilaginosus 356 1 61624 species 0 0 1 159743 species 192 Paenibacillus terrae 0 species 1 1178515 173 Paenibacillus swuensis 0 species 1 1616788 229 Paenibacillus bovis 0 59893 1 species 296 Paenibacillus peoriae Paenibacillus polymyxa 1254 species 1406 1 0 0 1763538 1 species 361 Paenibacillus crassostreae 0 1 189425 species 298 Paenibacillus graminis species 169760 1 0 Paenibacillus stellifer 123 1 2044880 species group 0 183 183 Paenibacillus riograndensis 0 species 483937 1 0 1 189426 species 287 Paenibacillus odorifer Paenibacillus borealis 212 160799 1 species 0 species 1126833 1 0 Paenibacillus beijingensis 184 173 genus 76632 1 0 0 377615 1 species 173 Thermobacillus composti 0 1 186824 family 66 0 1 1677050 genus 66 0 1471761 1 species 66 Novibacillus thermophilus 21207 1 Staphylococcaceae 0 29 family 42 90964 45669 2 genus 0 2 Salinicoccus 1 119 117 Salinicoccus halodurans 0 species 1 407035 genus 69965 4 4 0 Macrococcus 1079 1 352 Macrococcus caseolyticus 0 species 69966 1 Macrococcus canis 275 species 1 1855823 0 448 2619255 1 no rank 0 448 Macrococcus sp. IME1552 0 species 1898474 1 3 0 2005363 2 genus 1 369 Auricoccucs 1 1849491 species 0 Auricoccus indicus 366 genus 1279 33 176 0 Staphylococcus 19611 1 284 Staphylococcus muscae 0 species 1294 1 0 1 643214 species 623 Staphylococcus stepanovicii Staphylococcus haemolyticus 695 1 1283 species 0 Staphylococcus sciuri 732 1 1296 species 0 1 29384 species 0 Staphylococcus kloosii 511 Staphylococcus equorum 801 246432 1 species 0 325 Staphylococcus lutrae 0 155085 1 species 0 species 1 70255 506 Staphylococcus condimenti 349 Staphylococcus simulans 0 species 1286 1 467 Staphylococcus carnosus 0 species 1 1281 species 28035 1 0 Staphylococcus lugdunensis 563 Staphylococcus hominis 619 1290 1 species 0 1270 Staphylococcus pasteuri 0 species 45972 1 Staphylococcus xylosus 981 1 1288 species 0 0 species 1295 1 432 Staphylococcus schleiferi 0 29385 1 species 566 Staphylococcus saprophyticus 203 Staphylococcus pettenkoferi 0 species 1 170573 1284 1 species 0 Staphylococcus hyicus 367 70258 1 species 0 Staphylococcus piscifermentans 292 0 1 1280 species 1897 Staphylococcus aureus 559 Staphylococcus succinus 0 species 61015 1 362 Staphylococcus agnetis 0 1 985762 species 46127 1 species 0 Staphylococcus felis 417 0 1 985002 species 718 Staphylococcus argenteus 0 1 29388 species 620 Staphylococcus capitis species 308354 1 0 Staphylococcus simiae 625 Staphylococcus pseudintermedius 342 283734 1 species 0 582 Staphylococcus warneri 0 1292 1 species 1 214473 species 0 Staphylococcus nepalensis 517 578 Staphylococcus cohnii 0 1 29382 species 1282 1 species 0 Staphylococcus epidermidis 1047 no rank 1 91994 0 585 585 Staphylococcus sp. AntiMn-1 0 species 1715860 1 family 186820 9 0 4 Listeriaceae 3500 1 2 0 2 2755 genus 1 456 Brochothrix 1 2756 species 0 Brochothrix thermosphacta 454 Listeria 1 3040 6 1637 genus 41 0 Listeria ivanovii 631 species 1 1638 0 1640 1 species 0 Listeria seeligeri 427 species 1 1642 0 Listeria innocua 453 Listeria monocytogenes 1093 species 1639 1 0 species 1643 1 0 Listeria welshimeri 395 0 family 186821 1 162 1 663587 no rank 0 162 [Bacillus] selenitireducens 162 species 1 85683 0 186817 116 family 0 106 Bacillaceae 1 51731 genus 129337 15 0 94 Geobacillus 2271 1 33940 1 species 0 Geobacillus thermodenitrificans 207 0 species 1422 1 187 Geobacillus stearothermophilus species 1921421 1 0 Geobacillus genomosp. 3 131 no rank 6 2642459 0 908 species 1 691437 0 Geobacillus sp. C56-T3 150 Geobacillus sp. Y4.1MC1 266 species 581103 1 0 Geobacillus sp. Y412MC52 62 1 550542 species 0 58 Geobacillus sp. Y412MC61 0 species 1 544556 0 1 471223 species 294 Geobacillus sp. WCH70 species 1233873 1 0 Geobacillus sp. GHH01 78 0 species group 4 1505648 644 106 Geobacillus lituanicus 0 species 169283 1 species 1462 1 0 Geobacillus kaustophilus 98 Geobacillus thermocatenulatus 120 33938 1 species 0 Geobacillus thermoleovorans 320 species 1 33941 0 0 129338 1 species 100 Geobacillus subterraneus genus 459532 1 0 215 0 586416 1 species 215 Terribacillus aidingensis Bacillus 32551 1 genus 58 1386 699 0 species 1664069 1 0 Bacillus glycinifermentans 284 0 1404 1 species 1505 Bacillus megaterium 784 Bacillus endophyticus 0 species 1 135735 Bacillus weihaiensis 678 1 1547283 species 0 Bacillus smithii 298 1 1479 species 0 15379 0 species group 86661 10 0 species 1 1392 545 Bacillus anthracis 1428 1 species 0 Bacillus thuringiensis 4797 species 1 580165 0 Bacillus cytotoxicus 463 no rank 2750818 3 0 1327 Bacillus sp. FDAARGOS_235 541 species 1 1839798 0 species 1 2053832 0 Bacillus sp. HBCD-sjtu 378 1892404 1 species 0 Bacillus sp. ABP14 408 Bacillus toyonensis 406 155322 1 species 0 Bacillus bombysepticus 553 1 658666 species 0 Bacillus cereus 5437 1 1396 species 0 0 species 1 1405 1851 Bacillus mycoides species 79883 1 0 Bacillus horikoshii 352 226 Bacillus xiamenensis 0 species 1178537 1 Bacillus cohnii 671 1 33932 species 0 1 632773 species 0 Bacillus beveridgei 172 species 561879 1 0 Bacillus safensis 607 1159 Bacillus pumilus 0 1 1408 species 0 1 86664 species 523 Bacillus flexus 290 1792192 1 species group 0 Bacillus altitudinis 290 1 293387 species 0 412384 1 species 0 Bacillus aryabhattai 490 1 324767 species 0 Bacillus infantis 275 Bacillus coagulans 372 species 1 1398 0 447 Bacillus methanolicus 0 1471 1 species 3587 0 species group 9 653685 0 species 1648923 1 197 Bacillus paralicheniformis Bacillus vallismortis 30 1 72361 species 0 Bacillus subtilis 1450 1423 1 species 0 species 1 119858 0 Bacillus sonorensis 226 0 species 1452 1 307 Bacillus atrophaeus 0 1402 1 species 310 Bacillus licheniformis 1067 0 1938374 3 species subgroup 94 Bacillus siamensis 0 species 659243 1 488 Bacillus velezensis 0 492670 1 species Bacillus amyloliquefaciens 485 species 1 1390 0 58 Bacillus gibsonii 0 1 79881 species 3116 185979 19 no rank 0 666686 1 species 0 Bacillus sp. 1NLA3E 661 Bacillus sp. YP1 74 1 1574141 species 0 species 1 2049935 0 Bacillus sp. Lzh-5 29 34 Bacillus sp. BH072 0 species 1570330 1 species 563169 1 0 Bacillus sp. SJ-10 69 0 2009331 1 species 102 Bacillus sp. MD-5 0 species 1127744 1 98 Bacillus sp. JS Bacillus sp. SDLI1 100 1 1774743 species 0 0 1 1446792 species 78 Bacillus sp. Pc3 1565991 1 species 0 Bacillus sp. X1(2014) 414 0 species 1837130 1 144 Bacillus sp. FJAT-14266 0 1 98228 species 155 Bacillus sp. OxB-1 61 Bacillus sp. 275 0 1 1941347 species 126 Bacillus sp. H15-1 0 species 1856406 1 71 Bacillus sp. (in: Bacteria) 0 1409 1 species 0 species 1827146 1 430 Bacillus sp. IHB B 7164 0 1628753 1 species 67 Bacillus sp. LM 4-2 0 756828 1 species 274 Bacillus sp. WP8 species 1 2026248 0 Bacillus sp. 1s-1 129 Bacillus cellulosilyticus 579 species 1 1413 0 genus 84406 7 0 19 Virgibacillus 3114 1 Virgibacillus phasianinus 450 1 2017483 species 0 466 Virgibacillus halodenitrificans 0 1 1482 species 0 species 1 1473 522 Virgibacillus pantothenticus no rank 2620237 2 0 1051 Virgibacillus sp. SK37 500 species 1 403957 0 species 1 1911587 0 Virgibacillus sp. 6R 551 163877 1 species 0 Virgibacillus necropolis 606 0 1 182709 genus 1004 Oceanobacillus iheyensis 1004 1 182710 species 0 2233 5 2675234 genus 0 0 199441 1 species 567 Bacillus krulwichiae 239 Bacillus halodurans 0 86665 1 species species 300825 1 0 Bacillus lehensis 468 487 Bacillus clausii 0 79880 1 species 472 Bacillus pseudofirmus 0 79885 1 species 1 1950 Anoxybacillus 30 0 6 150247 genus Anoxybacillus gonensis 351 species 1 198467 0 678 0 2639704 2 no rank 343 Anoxybacillus sp. B2M1 0 1 1490052 species 0 1490057 1 species 335 Anoxybacillus sp. B7M1 0 species 1 294699 313 Anoxybacillus amylolyticus 0 33934 1 species 578 Anoxybacillus flavithermus 0 genus 1 175304 243 1472767 1 species 0 Lentibacillus amyloliquefaciens 243 301 genus 1 1906945 0 1 1426 species 0 Parageobacillus thermoglucosidasius 301 1 0 genus 1329200 3 702 1 Fictibacillus Fictibacillus arsenicus 347 255247 1 species 0 species 1221500 1 0 Fictibacillus phosphorivorans 354 142 0 351195 1 genus 0 species 1 1230341 142 Salimicrobium jeotgali 1083 genus 2675229 2 0 Bacillus muralis 252 species 264697 1 0 831 Bacillus simplex 0 1 1478 species 1 3282 Lysinibacillus 33 0 5 400634 genus no rank 2636778 1 0 616 616 Lysinibacillus sp. YS11 0 2072025 1 species 1421 1 species 0 Lysinibacillus sphaericus 1563 497 Lysinibacillus fusiformis 0 1 28031 species 573 Lysinibacillus varians 0 species 1 1145276 0 6 genus 45667 3 608 1 Halobacillus Halobacillus halophilus 283 1 1570 species 0 1 402384 species 0 Halobacillus mangrovi 319 0 1 1055323 2 genus 1 416 Aeribacillus 415 Aeribacillus pallidus 0 species 33936 1 0 genus 2675230 2 1099 Bacillus oceanisediminis 373 species 1 665099 0 726 Bacillus kochii 0 species 859143 1 0 1 29331 2 genus 1 411 Amphibacillus Amphibacillus xylanus 410 species 1449 1 0 7429 1 Planococcaceae 0 26 family 186818 26 442 0 648802 1 genus 1 241244 species 0 Rummeliibacillus stabekisii 442 648800 3 genus 0 19 Solibacillus 1 976 Solibacillus silvestris 489 species 1 76853 0 2637870 1 no rank 0 468 0 species 2048654 1 468 Solibacillus sp. R5-41 12 1372 genus 38 0 Planococcus 1 3444 0 161360 1 species 279 Planococcus antarcticus Planococcus plakortidis 90 1 1038856 species 0 350 Planococcus kocurii 0 1374 1 species 0 192421 1 species 284 Planococcus maritimus 1302659 1 species 0 Planococcus sp. L10.15 443 species 1 1215089 0 Planococcus halocryophilus 467 0 414778 1 species 418 Planococcus donghaensis 0 species 200991 1 139 Planococcus rifietoensis 1598147 1 species 0 Planococcus faecalis 412 no rank 2 2662419 0 524 0 1526927 1 species 394 Planococcus sp. PAMC 21323 Planococcus sp. MB-3u-03 130 1 2058136 species 0 454 1 Kurthia 0 6 genus 2 1649 448 0 no rank 2644826 1 0 1 1750719 species 448 Kurthia sp. 11kri321 1 325 Jeotgalibacillus 0 1 2 157226 genus 1508404 1 species 0 Jeotgalibacillus malaysiensis 324 Sporosarcina 1762 1 genus 1569 5 14 0 491 Sporosarcina psychrophila 0 1 1476 species species 1 1571 0 Sporosarcina ureae 848 0 no rank 2647733 2 409 species 1 1930546 0 Sporosarcina sp. P37 205 Sporosarcina sp. P33 204 1 1930764 species 0 0 family 186823 6 883 1 0 432330 3 genus 1 318 Tumebacillus 132 Tumebacillus algifaecis 0 1214604 1 species 1903704 1 species 0 Tumebacillus avium 185 29330 1 genus 0 168 1 405212 species 0 Alicyclobacillus acidocaldarius 168 0 genus 1129704 2 397 0 2055160 1 species 191 Kyrpidia sp. EA-1 206 Kyrpidia tusciae 0 species 33943 1 1203 0 539002 9 no rank 466 0 539738 2 no rank Gemella 466 1 genus 1378 2 0 6 460 0 no rank 2624949 1 species 1 1785995 0 Gemella sp. oral taxon 928 460 737 no rank 539742 7 0 genus 7 33986 0 4 Exiguobacterium 737 1 Exiguobacterium sibiricum 102 1 332410 species 0 117 Exiguobacterium antarcticum 0 species 1 132920 no rank 4 2644629 0 514 151 Exiguobacterium sp. U13-1 0 1 1849031 species Exiguobacterium sp. MH3 104 1399115 1 species 0 149 Exiguobacterium sp. ZWU0009 0 species 1 1224749 110 Exiguobacterium sp. AT1b 0 1 360911 species 4 1676648 class 0 2 Limnochordia 1 207 Limnochordales 205 1 order 1676649 3 6 0 0 2 1676650 family 199 199 1 Limnochorda 12 0 genus 2 1676651 0 species 1 1555112 187 Limnochorda pilosa 694 no rank 84086 1 0 694 endosymbiont 'TC1' of Trimyema compressum 0 species 1 243899 0 9 526524 class 1165 Erysipelotrichales 1 1165 9 526525 order 0 6 Erysipelotrichaceae 1159 1 family 128827 8 0 11 1 544447 no rank 0 175 species 1834207 1 0 Erysipelotrichaceae bacterium I46 175 95 genus 1 1729679 0 0 1 1702221 species 95 Faecalibaculum rodentium 0 2 3 1647 genus 1 498 Erysipelothrix Erysipelothrix rhusiopathiae 269 species 1648 1 0 Erysipelothrix larvae 227 1514105 1 species 0 Turicibacter 380 1 genus 2 191303 0 2 1 2638206 no rank 0 378 0 1712675 1 species 378 Turicibacter sp. H121 Negativicutes 3576 1 class 26 909932 6 0 order 1843489 8 6 0 Veillonellales 1117 1 Veillonellaceae 1111 1 family 7 31977 0 11 331 39948 1 genus 0 0 species 1 39950 331 Dialister pneumosintes 148 1 906 genus 0 148 Megasphaera elsdenii 0 species 1 907 0 909928 1 genus 98 0 1 1702287 species 98 Negativicoccus massiliensis 7 0 genus 29465 3 523 1 Veillonella Veillonella parvula 398 species 1 29466 0 1 248315 species 0 Veillonella rodentium 118 Acidaminococcales 200 1 order 4 1843488 0 2 1 198 Acidaminococcaceae 0 2 909930 3 family 196 0 904 2 genus species 1 905 0 Acidaminococcus fermentans 116 1 187327 species 0 Acidaminococcus intestini 80 9 0 order 909929 13 2253 1 Selenomonadales 0 8 family 1843491 8 1100 1 Selenomonadaceae 0 genus 1 158846 539 539 Megamonas hypermegale 0 species 1 158847 1 553 Selenomonas 0 10 970 6 genus 281 3 2637378 no rank 0 0 species 713030 1 107 Selenomonas sp. oral taxon 136 species 1 1884263 0 Selenomonas sp. oral taxon 920 80 0 712538 1 species 94 Selenomonas sp. oral taxon 478 1 69823 species 0 Selenomonas sputigena 112 0 species 1 971 150 Selenomonas ruminantium 1 1144 Sporomusaceae 4 0 4 1843490 family 1140 1 Pelosinus 4 0 genus 365348 3 0 1 2629460 no rank 624 624 Pelosinus sp. UFO1 0 484770 1 species 0 365349 1 species 512 Pelosinus fermentans no rank 1 33974 0 73 73 0 genus 1 1930845 Ndongobacter massiliensis 73 species 1 1871025 0 186801 190 class 86 0 Clostridia 1 92561 140 186802 order 0 217 Clostridiales 1 75910 family 68298 3 1 0 Syntrophomonadaceae 284 1 77 129001 1 genus 0 0 species 86170 1 77 Syntrophothermus lipocalidus 206 genus 1 862 0 863 1 species 0 Syntrophomonas wolfei 206 1 127 Heliobacteriaceae 0 2 2 31984 family 125 0 genus 2697 1 35701 1 species 0 Heliobacterium modesticaldum 125 2898 0 family 10 2304686 no rank 2305130 1 0 79 79 Ruminiclostridium sp. KB18 0 species 1834198 1 367 0 236752 1 genus 367 Fastidiosipila sanguinis 0 species 236753 1 173 0 genus 1 2304691 1 1510 species 0 [Clostridium] stercorarium 173 0 2304693 1 genus 297 84032 1 species 0 [Clostridium] thermosuccinogenes 297 145 0 genus 1 1637257 species 1 884684 0 Mageeibacillus indolicus 145 0 2304692 3 genus 1446 [Clostridium] clariflavum 526 species 1 288965 0 0 1515 1 species 333 Ruminiclostridium thermocellum 0 species 1677857 1 587 Herbivorax saccincola genus 1508657 2 0 9 Ruminiclostridium 391 1 1 1521 species 0 [Clostridium] cellulolyticum 382 0 3 family 543349 3 220 1 Symbiobacteriaceae genus 2733 2 0 2 Symbiobacterium 217 1 215 Symbiobacterium thermophilum 0 2734 1 species 929 1 Eubacteriaceae 2 0 family 186806 5 1730 2 genus 5 0 Eubacterium 1 519 0 species 1736 1 514 Eubacterium limosum 1 408 Acetobacterium 0 2 2 33951 genus 0 33952 1 species 406 Acetobacterium woodii 118 family 1 216572 0 118 0 genus 1 459786 118 Oscillibacter valericigenes 0 species 351091 1 829 0 8 538999 no rank Intestinimonas 1 115 1392389 2 genus 1 0 0 species 1297617 1 114 Intestinimonas butyriciproducens 0 5 family 539000 2 206 1 Clostridiales Family XVII. Incertae Sedis 201 0 1 73918 genus Thermaerobacter marianensis 201 species 73919 1 0 Clostridiales Family XIII. Incertae Sedis 1 416 543314 3 family 2 0 231 0 1 86331 genus 231 Mogibacterium diversum 0 species 114527 1 [Eubacterium] sulci 183 species 143393 1 0 92 0 genus 1 2717089 0 1 2086584 species 92 Mordavella sp. Marseille-P3756 65 0 41 31979 family 1 53234 Clostridiaceae Clostridium 1 49146 30 1485 genus 0 307 Clostridium chauvoei 1194 1 46867 species 0 0 species 1 1520 2543 Clostridium beijerinckii species 169679 1 0 Clostridium saccharobutylicum 1953 Clostridium cochlearium 1110 1 1494 species 0 0 species 1 1538 960 Clostridium ljungdahlii 0 1 1497 species 744 Clostridium formicaceticum 0 species 1 84023 923 Clostridium autoethanogenum species 1488 1 0 Clostridium acetobutylicum 1170 0 species 1 217159 1558 Clostridium carboxidivorans species 1501 1 0 Clostridium pasteurianum 2425 Clostridium tetani 1534 1 1513 species 0 1 394958 species 0 Clostridium taeniosporum 1387 0 29341 1 species 1303 Clostridium argentinense Clostridium saccharoperbutylacetonicum 2163 species 36745 1 0 species 1 1519 0 Clostridium tyrobutyricum 895 0 1 1534 species 1389 Clostridium kluyveri 735 Clostridium aceticum 0 84022 1 species 523 0 no rank 2 2614128 426 Clostridium sp. BNL1100 0 species 755731 1 species 1 1042156 0 Clostridium sp. SY8519 97 0 1 1493 species 1099 Clostridium cellulovorans 0 species 1 1492 2003 Clostridium butyricum Clostridium sporogenes 1270 1 1509 species 0 0 species 238834 1 1249 Clostridium estertheticum 0 1542 1 species 1070 Clostridium novyi 1423 Clostridium bornimense 0 1216932 1 species 1502 1 species 0 Clostridium perfringens 2447 1 1548 species 0 Clostridium scatologenes 1637 9852 Clostridium botulinum 0 1 1491 species 2280 Clostridium baratii 0 1561 1 species 589 1 Geosporobacter 1 0 genus 390805 2 Geosporobacter ferrireducens 588 1424294 1 species 0 genus 1981033 1 0 Mordavella 1 Candidatus Arthromitus 1 2287 49082 4 genus 0 18 3 2638829 no rank 0 2269 781 Candidatus Arthromitus sp. SFB-mouse-NL 0 species 1 1508644 0 species 1 1041504 707 Candidatus Arthromitus sp. SFB-rat-Yit 781 Candidatus Arthromitus sp. SFB-mouse 0 1 49118 species 4 0 genus 114627 3 1146 1 Alkaliphilus 484 Alkaliphilus oremlandii 0 461876 1 species Alkaliphilus metalliredigens 658 species 208226 1 0 1 5753 Peptostreptococcaceae 0 3 186804 9 family 344 1 Filifactor 0 2 genus 44259 2 Filifactor alocis 342 1 143361 species 0 1295 genus 1 1849828 0 0 species 1 1505 1295 Paeniclostridium sordellii 441 1411023 1 no rank 0 Peptostreptococcaceae bacterium oral taxon 929 441 species 2081703 1 0 199 0 1481960 1 genus 199 Peptoclostridium acidaminophilum 0 1 1731 species Clostridioides 1 2736 1870884 2 genus 0 2 0 1496 1 species 2734 Clostridioides difficile 735 genus 1 186831 0 Acetoanaerobium sticklandii 735 1511 1 species 0 86 1 990719 family 0 86 0 genus 1 990721 0 1 1805714 species 86 Christensenella massiliensis Peptococcaceae 4481 1 family 186807 25 0 20 56112 4 genus 8 0 Dehalobacter 1 418 0 2 2635733 no rank 311 Dehalobacter sp. CF 157 species 1131462 1 0 Dehalobacter sp. DCA 154 species 1147129 1 0 Dehalobacter restrictus 99 species 1 55583 0 230 genus 1 2282740 0 0 102134 1 species 230 Desulfotomaculum gibsoniae Desulfosporosinus 1 982 79206 4 genus 0 5 79209 1 species 0 Desulfosporosinus meridiei 344 Desulfosporosinus orientis 357 species 1563 1 0 Desulfosporosinus acidiphilus 276 species 885581 1 0 210 1 278993 genus 0 0 1 863643 species 210 Thermincola potens 2282742 1 genus 0 269 Desulfotomaculum acetoxidans 269 1 58138 species 0 325 genus 1 51514 0 0 species 51515 1 325 Dehalobacterium formicoaceticum 0 7 1562 5 genus 1 862 Desulfotomaculum 1 59610 species 0 Desulfotomaculum reducens 285 0 species 1564 1 206 Desulfotomaculum ruminis Desulfotomaculum ferrireducens 193 species 1833852 1 0 1 1565 species 0 Desulfotomaculum nigrificans 171 471826 1 genus 0 107 Candidatus Desulforudis audaxviator 107 species 1 471827 0 154 0 51196 1 genus 51197 1 species 0 Syntrophobotulus glycolicus 154 4 0 5 36853 genus 1 904 Desulfitobacterium 1 49338 species 0 Desulfitobacterium hafniense 199 142877 1 species 0 Desulfitobacterium metallireducens 271 Desulfitobacterium dehalogenans 190 1 36854 species 0 240 Desulfitobacterium dichloroeliminans 0 1 233055 species 186803 21 family 0 16 Lachnospiraceae 1 5864 333 186928 2 no rank 0 39491 1 species 0 [Eubacterium] rectale 195 0 1 712991 species 138 Lachnospiraceae bacterium oral taxon 500 0 841 1 genus 112 Roseburia hominis 112 species 301301 1 0 0 genus 1 28050 419 419 [Eubacterium] eligens 0 1 39485 species 0 genus 1 2719231 196 1 84030 species 0 [Clostridium] saccharolyticum 196 genus 1 698776 0 959 Cellulosilyticum lentocellum 959 species 1 29360 0 3 830 genus 0 3 Butyrivibrio 1 701 0 43305 1 species 399 Butyrivibrio proteoclasticus 299 Butyrivibrio hungatei 0 1 185008 species 355 0 genus 1 1663717 0 1 1679721 species 355 Herbinix luporum 0 genus 207244 1 363 Anaerostipes hadrus 363 649756 1 species 0 0 genus 2039240 1 308 1 28446 species 0 Anaerotignum propionicum 308 0 genus 2719313 1 189 189 [Clostridium] bolteae 0 208479 1 species 531 0 genus 1 2569097 species 39488 1 0 [Eubacterium] hallii 531 493 genus 572511 2 0 283 Blautia hansenii 0 1 1322 species 1 2648079 no rank 0 210 Blautia sp. YL58 210 species 1 1796616 0 genus 1506553 4 0 7 Lachnoclostridium 889 1 144 Lachnoclostridium phocaeense 0 species 1871021 1 177 1 2608895 no rank 0 0 1834196 1 species 177 Lachnoclostridium sp. YL32 561 Lachnoclostridium phytofermentans 0 species 1 66219 870 1 Ruminococcaceae 0 14 family 10 541000 946234 1 genus 0 111 0 292800 1 species 111 Flavonifractor plautii 0 552397 1 no rank 123 [Clostridium] cellulosi 123 species 29343 1 0 137 1 Faecalibacterium 2 0 genus 2 216851 0 1 853 species 135 Faecalibacterium prausnitzii 0 1 genus 253238 2 118 1 Ethanoligenens 0 species 253239 1 117 Ethanoligenens harbinense 67 0 no rank 1 2305133 species 1572656 1 0 Ruminococcaceae bacterium CPB6 67 1263 2 genus 0 300 0 1 1264 species 145 Ruminococcus albus 1160721 1 species 0 Ruminococcus bicirculans 155 Thermoanaerobacterales 1 11698 33 68295 order 15 0 family 543372 1 0 122 0 1 252965 genus 122 0 1 252966 species 122 Mahella australiensis 676 0 family 227387 1 genus 227388 1 0 676 species 1 184064 0 Thermodesulfobium narugense 676 Thermoanaerobacterales Family III. Incertae Sedis 1 5250 543371 13 family 16 0 genus 9 44000 0 71 Caldicellulosiruptor 3856 1 0 species 413888 1 453 Caldicellulosiruptor hydrothermalis species 1 717609 0 Caldicellulosiruptor obsidiansis 500 537 Caldicellulosiruptor kronotskyensis 0 species 1 413889 Caldicellulosiruptor bescii 528 1 31899 species 0 0 species 55205 1 442 Caldicellulosiruptor owensensis Caldicellulosiruptor lactoaceticus 416 52766 1 species 0 0 1 44001 species 488 Caldicellulosiruptor saccharolyticus 421 Caldicellulosiruptor kristjanssonii 0 1 52765 species 1378 1 Thermoanaerobacterium 0 4 genus 28895 3 906 Thermoanaerobacterium thermosaccharolyticum 0 1517 1 species 468 Thermoanaerobacterium xylanolyticum 0 1 29329 species 14 0 family 17 186814 5635 1 Thermoanaerobacteraceae Thermoanaerobacter 4706 1 genus 1754 9 0 186 0 species 2325 1 534 Thermoanaerobacter kivui 1 583357 species 0 Thermoanaerobacter mathranii 529 532 Thermoanaerobacter italicus 0 species 108150 1 0 species 29323 1 509 Thermoanaerobacter brockii 0 no rank 2636821 2 1337 654 Thermoanaerobacter sp. X514 0 species 1 399726 0 species 573062 1 683 Thermoanaerobacter sp. X513 species 1 46354 0 Thermoanaerobacter wiegelii 566 Thermoanaerobacter pseudethanolicus 513 species 1 496866 0 378 genus 1 249529 0 Caldanaerobacter subterraneus 378 species 1 911092 0 0 genus 140458 1 101 1 85874 species 0 Thermacetogenium phaeum 101 0 1 2 129957 genus 1 252 Carboxydothermus Carboxydothermus hydrogenoformans 251 species 129958 1 0 184 no rank 3 42857 0 1 42837 genus 0 68 68 Ammonifex degensii 0 species 1 42838 1 116 Moorella 2 0 2 44260 genus Moorella thermoacetica 114 species 1 1525 0 3945 1 Halanaerobiales 0 7 order 10 53433 1 2695 Halanaerobiaceae 0 15 6 972 family 2278 1 Halanaerobium 0 8 genus 3 2330 Halanaerobium praevalens 1190 2331 1 species 0 1080 Halanaerobium hydrogeniformans 0 species 656519 1 402 1 Halothermothrix 11 0 genus 32636 2 species 1 31909 0 Halothermothrix orenii 391 53434 3 family 0 8 Halobacteroidaceae 1 1243 genus 1 28186 0 388 388 Acetohalobium arabaticum 0 species 28187 1 847 0 genus 1 42417 species 1 42422 0 Halobacteroides halobius 847 1 507 Natranaerobiales 4 0 4 485256 order 1 0 485255 3 family 1 503 Natranaerobiaceae Natranaerobius 502 1 genus 2 375928 10 0 0 species 1 375929 492 Natranaerobius thermophilus 415 order 2770089 2 0 2770092 1 family 0 311 311 1 499228 genus 0 Tepidanaerobacter acetatoxydans 311 499229 1 species 0 104 0 family 1 2770093 genus 291988 1 0 104 1 291990 species 0 Thermosediminibacter oceani 104 199 phylum 67819 4 0 0 class 1663419 4 199 1 0 4 1663425 order 1 199 Fimbriimonadales Fimbriimonadaceae 1 198 3 1663426 family 1 0 Fimbriimonas 1 197 2 1005038 genus 0 1 1 1005039 species 0 Fimbriimonas ginsengisoli 196 0 clade 1798711 154 3622970 0 26 phylum 1117 154 3622970 1 Cyanobacteria Synechococcales 3586214 1 order 1890424 55 0 133 472 family 1890436 2 0 2 0 genus 1152 2 472 1 Pseudanabaena no rank 1 2593292 0 470 470 Pseudanabaena sp. PCC 7367 0 species 82654 1 407 1890429 2 family 0 5 0 155977 2 genus 1 407 Acaryochloris species 1 155978 0 Acaryochloris marina 402 2 2303730 family 0 302 2 170610 genus 0 4 Halomicronema 1 302 species 1209493 1 0 Halomicronema hongdechloris 298 2 0 family 1890428 5 737 1 Merismopediaceae Synechocystis 1 735 4 1142 genus 0 21 714 3 2640012 no rank 0 Synechocystis sp. IPPAS B-1465 212 species 2116702 1 0 Synechocystis sp. PCC 6714 290 1147 1 species 0 species 1148 1 0 Synechocystis sp. PCC 6803 212 3535740 1 Prochloraceae 21 0 family 1213 5 1 3535719 Prochlorococcus 0 146 4 1218 genus Prochlorococcus marinus 2677108 species 1219 1 0 2 2627481 no rank 0 858465 1501269 1 species 0 Prochlorococcus sp. MIT 0801 4633 853832 Prochlorococcus sp. MIT 0604 0 species 1 1501268 35 0 family 1890426 32 47304 1 Synechococcaceae genus 26 1129 384 0 Synechococcus 45373 1 species 33070 1 0 Synechococcus lividus 117 Synechococcus elongatus 135 species 1 32046 0 0 23 2626047 no rank 44737 Synechococcus sp. PCC 7117 206 species 1 195498 0 443 Synechococcus sp. WH 7803 0 32051 1 species 370 Synechococcus sp. CC9311 0 species 1 64471 species 1173263 1 0 Synechococcus sp. PCC 7502 537 species 1 195253 0 Synechococcus sp. PCC 6312 184 0 species 32049 1 167 Synechococcus sp. PCC 7002 12445 Synechococcus sp. CC9605 0 1 110662 species 0 species 166314 1 12799 Synechococcus sp. WH 8109 Synechococcus sp. PCC 7003 160 374981 1 species 0 1280380 1 species 0 Synechococcus sp. KORDI-100 8176 Synechococcus sp. CC9902 384 1 316279 species 0 species 29410 1 0 Synechococcus sp. WH 8103 1453 0 species 585425 1 3465 Synechococcus sp. KORDI-52 Synechococcus sp. WH 8102 1451 species 84588 1 0 0 species 1 321332 147 Synechococcus sp. JA-2-3B'a(2-13) 0 1 585423 species 534 Synechococcus sp. KORDI-49 0 species 316278 1 542 Synechococcus sp. RCC307 173 Synechococcus sp. NIES-970 0 1827144 1 species species 1 321327 0 Synechococcus sp. JA-3-3Ab 118 species 374982 1 0 Synechococcus sp. PCC 73109 240 156 Synechococcus sp. PCC 8807 0 species 1 195248 species 1350461 1 0 Synechococcus sp. UTEX 2973 158 429 Synechococcus sp. SynAce01 0 1916956 1 species 1 13034 genus 0 389 1 292566 species 0 Dactylococcopsis salina 389 1 146785 genus 0 171 171 Thermosynechococcus elongatus 0 species 146786 1 Cyanobium 1 1336 167375 3 genus 0 47 Cyanobium gracile 706 59930 1 species 0 583 0 no rank 2627006 1 1 1851505 species 0 Cyanobium sp. NIES-981 583 Leptolyngbyaceae 1 1119 1890438 6 family 10 0 Leptolyngbya 1109 1 genus 47251 5 0 5 species 1 1184 0 Leptolyngbya boryana 264 no rank 3 2650499 0 840 1752064 1 species 0 Leptolyngbya sp. NIES-3755 207 species 111781 1 0 Leptolyngbya sp. PCC 7376 443 190 Leptolyngbya sp. O-77 0 species 1080068 1 2 0 order 8 52604 2780 1 Pleurocapsales 1 408 Hyellaceae 14 0 3 1890500 family 44474 2 genus 0 2 Pleurocapsa 1 394 392 Pleurocapsa minor 0 species 1 54308 4 1890498 family 0 9 Dermocarpellaceae 1 2370 2361 1 Stanieria 0 9 genus 3 102115 1147 Stanieria cyanosphaera 0 1 102116 species 0 2642663 1 no rank 1205 Stanieria sp. NIES-3757 1205 1807358 1 species 0 540 1 1983111 no rank 0 540 cyanobacterium endosymbiont of Epithemia turgida 0 species 1 718217 679 1 Chroococcidiopsidales 6 0 order 4 1890505 1 673 Chroococcidiopsidaceae 0 8 3 1890528 family 0 1 2 54298 genus 1 665 Chroococcidiopsis Chroococcidiopsis thermalis 664 1 54299 species 0 0 class 307596 5 392 5 307595 order 2 0 Gloeobacterales 1 392 3 0 family 4 1890422 390 1 Gloeobacteraceae 0 4 33071 3 genus 1 387 Gloeobacter 207 Gloeobacter kilaueensis 0 species 1416614 1 Gloeobacter violaceus 176 species 1 33072 0 0 1301283 46 subclass 15884 31 0 order 1118 25 10341 1 Chroococcales 7 1890464 family 0 24 Chroococcaceae 1 3864 268175 2 genus 2 0 Chondrocystis 1 1196 1194 0 no rank 1 2648896 1194 Chondrocystis sp. NIES-4102 0 2005460 1 species 0 102231 1 genus 562 562 1 2623012 no rank 0 0 species 1173026 1 562 Gloeocapsa sp. PCC 7428 15 0 669357 3 genus 1 2082 Geminocystis 2067 2625037 2 no rank 0 1 1617448 species 0 Geminocystis sp. NIES-3709 944 species 1 1615909 0 Geminocystis sp. NIES-3708 1123 Cyanobacteriaceae 1 974 3 1890452 family 0 6 genus 102234 2 0 4 Cyanobacterium 968 1 0 1 379064 species 964 Cyanobacterium aponinum 1890450 10 family 4 0 Aphanothecaceae 1 4028 1 263510 genus 0 542 2546360 1 species 0 542 542 Cyanothece sp. ATCC 51142 0 1 43989 strain 1 861 Candidatus Atelocyanobacterium 1 0 1453359 2 genus Candidatus Atelocyanobacterium thalassa 860 713887 1 species 0 1390 0 28070 2 genus 742 0 species 2546359 1 Cyanothece sp. PCC 7822 742 497965 1 strain 0 648 2546356 1 species 0 0 strain 65393 1 648 Cyanothece sp. PCC 7424 419 0 2 92682 no rank 76023 2 genus 2 0 Halothece 1 419 417 0 2632878 1 no rank 1 65093 species 0 Halothece sp. PCC 7418 417 0 genus 2546365 2 812 0 species 2 2546366 812 410 Cyanothece sp. PCC 8802 0 strain 395962 1 Cyanothece sp. PCC 8801 402 1 41431 strain 0 Microcystaceae 1 1444 4 1890449 family 0 9 1435 1 Microcystis 11 0 genus 1125 3 1126 1 species 0 Microcystis aeruginosa 984 440 no rank 2643300 1 0 0 species 1 1967666 440 Microcystis sp. MC19 Oscillatoriales 5543 1 order 1150 21 0 41 1892252 5 family 14 0 Microcoleaceae 1 2672 Trichodesmium 1 2393 1205 2 genus 2 0 2391 Trichodesmium erythraeum 0 species 1206 1 Microcoleus 1 265 2 44471 genus 0 5 260 0 no rank 1 2642155 1173027 1 species 0 Microcoleus sp. PCC 7113 260 237 1 Cyanothecaceae 28 0 family 1892249 3 Cyanothece 209 1 genus 43988 2 31 0 0 2649277 1 no rank 178 Cyanothece sp. PCC 7425 178 species 395961 1 0 Coleofasciculaceae 164 1 family 1892251 3 9 0 genus 63132 2 0 1 Geitlerinema 155 1 1 2648775 no rank 0 154 0 1173025 1 species 154 Geitlerinema sp. PCC 7407 2 0 3 1892255 family 1 621 Gomontiellaceae Crinalium 1 619 2 241421 genus 1 0 Crinalium epipsammum 618 species 1 241425 0 family 1892254 6 22 0 Oscillatoriaceae 1808 1 1155738 2 genus 0 9 Moorea 1 785 776 Moorea producens 0 1155739 1 species 12 0 3 1158 genus 1 1001 Oscillatoria Oscillatoria acuminata 516 species 1 118323 0 Oscillatoria nigro-viridis 473 species 482564 1 0 Nostocales 16455 1 order 34 1161 0 63 550 1 1219117 no rank 0 1940762 1 species 0 Nostocales cyanobacterium HT-58-2 550 Nostocaceae 9059 1 family 18 1162 41 0 0 3 3 264688 genus 1 1255 Trichormus 670 Trichormus azollae 0 1164 1 species 1 264691 species 0 Trichormus variabilis 582 genus 10 1177 50 0 Nostoc 5463 1 597 Nostoc punctiforme 0 272131 1 species 614 Nostoc flagelliforme 0 species 1306274 1 4202 2593658 7 no rank 0 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 438 species 1 1618022 0 1 317936 species 0 Nostoc sp. PCC 7107 686 0 species 1 103690 483 Nostoc sp. PCC 7120 0 species 1 1261031 589 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species 28072 1 0 Nostoc sp. PCC 7524 669 Nostoc sp. CENA543 635 species 1 1869241 0 0 1751286 1 species 702 Nostoc sp. NIES-3756 4 1163 genus 0 18 Anabaena 1 2300 0 2619674 2 no rank 1401 Anabaena sp. 90 691 46234 1 species 0 1647413 1 species 0 Anabaena sp. WA102 710 0 species 1165 1 881 Anabaena cylindrica Rivulariaceae 1 1168 3 1185 family 0 13 4 0 genus 373984 2 1155 1 Rivularia 2676603 1 no rank 0 1151 0 species 1 373994 1151 Rivularia sp. PCC 7116 0 13 family 1892263 3 880 1 Hapalosiphonaceae 0 5 1190 2 genus 1 867 Fischerella 862 0 no rank 1 494603 Fischerella sp. NIES-3754 862 1 1752063 species 0 0 8 2661849 family 4735 4735 1 Calothrix 0 43 genus 1186 8 654 Calothrix parietina 0 species 1 32054 0 6 2619626 no rank 4038 species 1337936 1 0 Calothrix sp. 336/3 576 Calothrix sp. NIES-3974 486 1 2005462 species 0 Calothrix sp. PCC 7507 513 species 1 99598 0 949 Calothrix sp. NIES-4071 0 species 2005469 1 715 Calothrix sp. NIES-2098 0 1954171 1 species Calothrix sp. NIES-4101 799 species 1 2005461 0 1297 33 phylum 0 4130 0 19 class 33 188787 4130 1 Deinococci 43 0 order 118964 15 2180 1 Deinococcales 6 0 family 14 183710 2137 1 Deinococcaceae Deinococcus 2131 1 genus 13 1298 0 42 Deinococcus maricopensis 167 species 309887 1 0 0 species 1 502394 202 Deinococcus gobiensis 1768108 1 species 0 Deinococcus actinosclerus 182 193 Deinococcus swuensis 0 species 1 1182571 174 0 2623546 1 no rank 0 species 2080419 1 174 Deinococcus sp. NW-56 species 1 1182568 0 Deinococcus puniceus 135 Deinococcus deserti 120 species 1 310783 0 species 1 1299 0 Deinococcus radiodurans 144 182 Deinococcus soli Cha et al. 2016 0 species 1 1309411 169 Deinococcus peraridilitoris 0 species 432329 1 1 55148 species 0 Deinococcus proteolyticus 256 165 Deinococcus geothermalis 0 1 68909 species Thermales 1 1704 68933 15 order 0 9 0 17 family 188786 14 1695 1 Thermaceae 329 1 Meiothermus 0 7 genus 65551 3 0 52022 1 species 118 Meiothermus silvanus 0 species 277 1 204 Meiothermus ruber 107 genus 1 186191 0 0 1 186192 species 107 Marinithermus hydrothermalis Thermus 1025 1 genus 8 270 0 26 0 species 1 274 352 Thermus thermophilus 0 species 56956 1 88 Thermus brockianus Thermus parvatiensis 135 1 456163 species 0 126 Thermus aquaticus 0 species 271 1 Thermus scotoductus 76 37636 1 species 0 130 Thermus oshimai 0 species 56957 1 0 1 2619321 no rank 92 0 1 1111069 species 92 Thermus sp. CCB_US3_UF1 208447 1 genus 0 217 0 species 187137 1 217 Oceanithermus profundus 2 2762275 order 0 227 227 family 332247 2 0 1 227 Truepera 9 0 2 332248 genus 218 Truepera radiovictrix 0 species 1 332249 2 2138240 phylum 0 160 class 2138243 2 0 2 Coprothermobacteria 160 1 order 2138246 1 0 158 family 2138247 1 0 158 158 0 genus 1 68335 Coprothermobacter proteolyticus 158 35786 1 species 0 1224 2026 phylum 0 191 Proteobacteria 1 955177 665 class 1807140 6 0 225057 6 order 15 0 Acidithiobacillales 1 665 family 5 225058 0 15 Acidithiobacillaceae 650 1 0 14 genus 119977 4 635 1 Acidithiobacillus 0 1 33059 species 206 Acidithiobacillus caldus 0 species 1 920 174 Acidithiobacillus ferrooxidans species 1 160808 0 Acidithiobacillus ferrivorans 241 Alphaproteobacteria 369239 1 class 28211 563 308 0 0 116 90 204455 order 1 34033 Rhodobacterales Rhodobacteraceae 1 33917 89 31989 family 0 574 Celeribacter 1974 1 genus 875170 5 0 13 452 Celeribacter ethanolicus 0 1758178 1 species 0 species 1 1411902 486 Celeribacter manganoxidans species 1 1397108 0 Celeribacter marinus 358 665 Celeribacter indicus 0 1 1208324 species 5 0 2 1579315 genus 1 452 Halocynthiibacter 1 1579316 species 0 Halocynthiibacter arcticus 447 546 genus 159345 1 0 Roseibacterium elongatum 546 159346 1 species 0 535 0 1 2211641 genus Loktanella vestfoldensis 535 1 245188 species 0 1 541 Roseovarius 5 0 74030 2 genus 0 species 1 215743 536 Roseovarius mucosus Antarctobacter 530 1 genus 74032 2 6 0 Antarctobacter heliothermus 524 species 74033 1 0 623 1 Planktomarina 0 2 genus 1284657 2 621 Planktomarina temperata 0 species 1284658 1 2 188905 genus 0 5 Jannaschia 1 469 464 0 no rank 1 2645469 species 1 290400 0 Jannaschia sp. CCS1 464 1 1759396 genus 0 332 0 no rank 1 2622455 332 0 species 1920883 1 332 Marivivens sp. JLT3646 302485 5 genus 55 0 Phaeobacter 1 3766 Phaeobacter inhibens 1365 species 221822 1 0 species 1844006 1 0 Phaeobacter porticola 391 species 1 60890 0 Phaeobacter gallaeciensis 1045 1 1580596 species 0 Phaeobacter piscinae 910 Roseobacter 953 1 genus 3 2433 9 0 species 1 2434 0 Roseobacter denitrificans 482 species 42443 1 0 Roseobacter litoralis 462 genus 2 1609958 4 0 Confluentimicrobium 659 1 655 no rank 2643318 1 0 0 1609966 1 species 655 Confluentimicrobium sp. EMB200-NS6 0 7 191028 2 genus 1 697 Leisingera 0 1 133924 species 690 Leisingera methylohalidivorans Defluviimonas 1 626 1097466 2 genus 0 9 0 species 1 1335048 617 Defluviimonas alba Sagittula 1 678 2 58842 genus 0 7 0 1 2624628 no rank 671 671 Sagittula sp. P11 0 species 1 2009329 0 6 299261 2 genus 1 413 Tateyamaria 407 Tateyamaria omphalii 0 1 299262 species 0 genus 2 60136 1090 483 Sulfitobacter pseudonitzschiae 0 1 1402135 species 607 no rank 1 196795 0 0 1917485 1 species 607 Sulfitobacter sp. AM1-D1 genus 3 92944 12 0 Ketogulonicigenium 678 1 291 Ketogulonicigenium robustum 0 species 1 92947 Ketogulonicigenium vulgare 375 species 1 92945 0 405 285107 1 genus 0 405 Thioclava nitratireducens 0 species 1 1915078 0 2 58840 no rank 722 species 1 1904441 0 Rhodobacteraceae bacterium 312 Rhodobacteraceae bacterium QY30 410 species 1 2033435 0 1 1126 Ruegeria 0 10 97050 3 genus 0 2625375 1 no rank 364 Ruegeria sp. TM1040 364 292414 1 species 0 Ruegeria pomeroyi 752 species 89184 1 0 1 727 Pelagibaca 0 9 2 360528 genus 0 species 1 1250539 718 Pelagibaca abyssi genus 436357 1 0 Thalassococcus 3 0 4 genus 367771 2 752 1 Marinovum species 1 42444 0 Marinovum algicola 748 0 genus 263377 2 1233 0 species 1 1229727 622 Thiobacimonas profunda 611 1 2640570 no rank 0 611 Yangia sp. CCB-MM3 0 species 1 1792508 Rhodobaca 461 1 genus 119541 2 0 2 459 Rhodobaca barguzinensis 0 1 441209 species 495 1 Pannonibacter 17 0 genus 227873 2 Pannonibacter phragmitetus 478 species 1 121719 0 0 15 genus 4 53945 1209 1 Octadecabacter Octadecabacter arcticus 376 species 1 53946 0 0 1458307 1 species 359 Octadecabacter temperatus species 1 1217908 0 Octadecabacter antarcticus 459 0 60 genus 265 9 3695 1 Paracoccus 547 Paracoccus yeei 0 species 1 147645 Paracoccus contaminans 342 1 1945662 species 0 0 1077935 1 species 486 Paracoccus zhejiangensis species 2065379 1 0 Paracoccus sp. CBA4604 435 0 no rank 1 246570 448 448 Paracoccus sp. BM15 0 1 1529068 species 434 Paracoccus aminophilus 0 1 34003 species Paracoccus denitrificans 486 266 1 species 0 34004 1 species 0 Paracoccus aminovorans 457 1 0 2 309512 genus 1 486 Dinoroseobacter 215813 1 species 0 Dinoroseobacter shibae 485 0 14 genus 34008 4 1888 1 Rhodovulum 890 Rhodovulum sulfidophilum 0 1 35806 species no rank 2631432 2 0 984 0 species 308754 1 535 Rhodovulum sp. MB263 Rhodovulum sp. P5 449 species 1564506 1 0 399 1 1649279 genus 0 1 379347 species 0 Ruegeria mobilis 399 2 Loktanella 0 245186 1 genus 4 478070 genus 0 70 Labrenzia 1 1691 Labrenzia aggregata 558 species 187304 1 0 0 no rank 2648686 2 1063 Labrenzia sp. CP4 517 1 1674922 species 0 species 2021862 1 0 Labrenzia sp. VG12 546 1 2487 Rhodobacter 0 36 1060 5 genus 0 1 1061 species 436 Rhodobacter capsulatus Rhodobacter sphaeroides 1062 species 1063 1 0 953 0 2 196779 no rank 0 1 2033869 species 441 Rhodobacter sp. CZR27 0 1850250 1 species 512 Rhodobacter sp. LPB0142 30 0 order 20 204458 5400 1 Caulobacterales 1 5370 Caulobacteraceae 119 0 76892 19 family 328 1 81440 no rank 0 0 species 1 1759059 328 Caulobacteraceae bacterium OTSz_A_272 Phenylobacterium 469 1 genus 2 20 2 0 species 1 284016 0 Phenylobacterium zucineum 467 1861 1 Brevundimonas 93 0 genus 41275 7 291 Brevundimonas naejangsanensis 0 1 588932 species species 1 41276 0 Brevundimonas vesicularis 241 340 Brevundimonas subvibrioides 0 species 74313 1 0 no rank 2622653 3 896 261 Brevundimonas sp. DS20 0 species 1532555 1 species 1827469 1 0 Brevundimonas sp. GW460-12-10-14-LB2 241 Brevundimonas sp. LM2 394 1938605 1 species 0 2 76890 genus 5 0 Asticcacaulis 1 269 species 78587 1 0 Asticcacaulis excentricus 264 0 86 genus 75 6 2324 1 Caulobacter 687 Caulobacter vibrioides 0 1 155892 species 0 no rank 2648921 1 419 0 1 366602 species 419 Caulobacter sp. K31 Caulobacter henricii 361 species 69395 1 0 Caulobacter mirabilis 394 69666 1 species 0 88688 1 species 0 Caulobacter segnis 377 1921002 7 order 9 0 Holosporales 1 2377 0 20 3 1777752 family 1 652 Candidatus Paracaedibacteraceae Candidatus Paracaedibacter 1 632 1521255 2 genus 0 6 Candidatus Paracaedibacter acanthamoebae 626 species 91604 1 0 1 2100208 family 0 914 0 1 1509243 genus 914 Candidatus Nucleicultrix amoebiphila 914 1 1509244 species 0 Holosporaceae 802 1 family 2 44746 1 0 204454 1 no rank 0 801 801 endosymbiont of Acanthamoeba sp. UWC8 0 species 86106 1 5 0 4 255473 order 1 697 Parvularculales Parvularculaceae 1 692 255474 3 family 0 11 18 0 genus 208215 2 681 1 Parvularcula 0 1 208216 species 663 Parvularcula bermudensis 2 2800059 order 0 569 569 family 2 2800061 0 17 0 2 74317 genus 1 569 Maricaulis Maricaulis maris 552 74318 1 species 0 0 6 2800060 order 2337 6 69657 family 34 0 Hyphomonadaceae 1 2337 Hirschia 1 979 2 2723 genus 13 0 2724 1 species 0 Hirschia baltica 966 39 0 genus 3 85 1324 1 Hyphomonas Hyphomonas neptunium 381 species 1 81032 0 904 no rank 2630699 1 0 Hyphomonas sp. Mor2 904 species 1 1906738 0 4 1191478 order 2 0 Magnetococcales 1 287 285 1 Magnetococcaceae 2 0 family 1191479 3 283 1 Magnetococcus 0 3 genus 162171 2 0 1124597 1 species 280 Magnetococcus marinus 17 0 order 766 55 26122 1 Rickettsiales 0 19 family 775 27 10471 1 Rickettsiaceae 0 33988 24 tribe 9738 1 69474 genus 0 1502 species 1 784 0 Orientia tsutsugamushi 1502 0 778 genus 780 23 8236 1 Rickettsia 0 1129742 2 species group 1774 Rickettsia bellii 1077 species 33990 1 0 697 Rickettsia canadensis 0 1 788 species 936 0 114295 1 no rank 337479 1 species 0 Rickettsia endosymbiont of Bemisia tabaci 936 2877 17 114277 species group 0 392 Rickettsia akari 0 species 1 786 0 species 1 42862 448 Rickettsia felis species 1 33989 0 Rickettsia amblyommatis 149 Rickettsia montanensis 80 1 33991 species 0 1 33992 species 0 Rickettsia rhipicephali 118 58 Rickettsia conorii 0 species 781 1 species 1 109232 0 Rickettsia monacensis 363 84 Rickettsia rickettsii 0 1 783 species 0 35788 1 species 36 Rickettsia africae Rickettsia massiliae 95 1 35791 species 0 56 Rickettsia philipii 0 species 1 1105106 44 Rickettsia parkeri 0 species 1 35792 0 species 1 47589 259 Rickettsia peacockii 787 1 species 0 Rickettsia australis 569 Rickettsia slovaca 33 species 1 35794 0 Rickettsia japonica 42 35790 1 species 0 species 1 226665 0 Rickettsia heilongjiangensis 51 2 114292 species group 0 1871 966 Rickettsia prowazekii 0 species 1 782 Rickettsia typhi 905 species 1 785 0 genus 2 2115980 0 3 Candidatus Phycorickettsia 714 1 1 2115978 species 0 Candidatus Phycorickettsia trachydisci 711 1915 0 1 1699067 no rank 1915 Rickettsiales bacterium Ac37b 0 species 1 1528098 1 12898 Anaplasmataceae 0 35 942 23 family 50 0 genus 6 943 5888 1 Ehrlichia 0 species group 4 106178 4774 Ehrlichia muris 1024 species 35795 1 0 0 species 1 944 1376 Ehrlichia canis Ehrlichia chaffeensis 1119 species 945 1 0 Ehrlichia ruminantium 1255 779 1 species 0 0 no rank 106181 1 1064 0 species 1 391036 1064 Ehrlichia sp. HF 5488 0 952 8 tribe Wolbachia 1 5488 8 953 genus 0 124 no rank 7 2640676 0 5364 Wolbachia endosymbiont of Brugia malayi 564 species 80849 1 0 0 species 246273 1 623 Wolbachia endosymbiont of Cimex lectularius 607 Wolbachia endosymbiont of Onchocerca volvulus 0 77551 1 species Wolbachia endosymbiont of Drosophila melanogaster 694 species 1 163164 0 Wolbachia endosymbiont of Drosophila simulans 1534 species 77038 1 0 1 66084 species 0 Wolbachia sp. wRi 728 Wolbachia endosymbiont of Onchocerca ochengi 614 1 100901 species 0 589 1 Anaplasma 5 0 genus 4 768 species 1 769 0 Anaplasma centrale 149 0 1 106179 species group 274 0 948 1 species 274 Anaplasma phagocytophilum Anaplasma marginale 161 species 1 770 0 Neorickettsia 898 1 genus 33993 4 13 0 Neorickettsia risticii 328 species 1 950 0 1 951 species 0 Neorickettsia sennetsu 243 0 1 33994 species 314 Neorickettsia helminthoeca 3 1328881 family 2 0 Candidatus Midichloriaceae 1 821 Candidatus Midichloria 1 819 2 411566 genus 0 12 0 species 234827 1 807 Candidatus Midichloria mitochondrii Sphingomonadales 23488 1 order 82 204457 151 0 17858 1 Sphingomonadaceae 0 242 family 59 41297 Rhizorhabdus 438 1 genus 1649486 2 0 12 1 1850238 species 0 Rhizorhabdus dicambivorans 426 genus 15 13687 156 0 Sphingomonas 5571 1 Sphingomonas taxi 357 species 1 1549858 0 323 Sphingomonas melonis 0 species 1 152682 0 species 93064 1 330 Sphingomonas koreensis 2161 196159 6 no rank 0 Sphingomonas sp. KC8 282 species 1 1030157 0 0 1938607 1 species 260 Sphingomonas sp. LM7 0 species 1 1327635 302 Sphingomonas sp. Cra20 291 Sphingomonas sp. NIC1 0 species 1 1961362 Sphingomonas sp. LK11 688 species 1390395 1 0 338 Sphingomonas sp. MM-1 0 species 745310 1 0 species 1609977 1 379 Sphingomonas hengshuiensis 1 1129 Sphingomonas wittichii 0 566 160791 2 species 0 1283312 1 strain 563 Sphingomonas sp. DC-6 species 1560345 1 0 Sphingomonas panacis 310 Sphingomonas sanxanigenens 426 1 397260 species 0 0 1 2709685 genus 335 species 266812 1 0 Sphingorhabdus flavimaris 335 1 3897 Sphingobium 0 197 15 165695 genus 255 Sphingobium hydrophobicum 0 species 1673076 1 417 Sphingobium yanoikuyae 0 1 13690 species 1 332055 species 0 Sphingobium indicum 230 276 Sphingobium japonicum 0 332056 1 species 120107 1 species 0 Sphingobium cloacae 227 234 Sphingobium herbicidovorans 0 species 1 76947 Sphingobium chlorophenolicum 224 species 1 46429 0 0 6 2611147 no rank 1599 0 species 407020 1 287 Sphingobium sp. MI1205 0 species 1 627192 283 Sphingobium sp. SYK-6 Sphingobium sp. RAC03 285 species 1 1843368 0 Sphingobium sp. YBL2 249 species 1 484429 0 species 1855519 1 0 Sphingobium sp. EP60837 199 species 1 1315974 0 Sphingobium sp. TKS 296 0 1 1332080 species 238 Sphingobium baderi 1 732 Sphingorhabdus 0 16 3 1434046 genus 716 no rank 2 2614947 0 species 1 2077182 0 Sphingorhabdus sp. YGSMI21 372 344 Sphingorhabdus sp. M41 0 1 1806885 species Sphingopyxis 1 3450 165697 10 genus 0 98 species 1 33052 0 Sphingopyxis terrae 278 349 Sphingopyxis granuli 0 1 267128 species no rank 2614943 4 0 1533 0 1 292913 species 264 Sphingopyxis sp. 113P3 0 1 1866325 species 364 Sphingopyxis sp. MG Sphingopyxis sp. QXT-31 329 species 1 1357916 0 Sphingopyxis sp. LPB0140 576 species 1 1913578 0 Sphingopyxis fribergensis 309 species 1 1515612 0 Sphingopyxis alaskensis 269 species 1 117207 0 Sphingopyxis macrogoltabida 614 species 33050 1 0 1415 1 Novosphingobium 0 39 genus 5 165696 0 1 2644732 no rank 314 702113 1 species 0 Novosphingobium sp. PP1Y 314 0 1 48935 species 309 Novosphingobium aromaticivorans Novosphingobium pentaromativorans 343 species 205844 1 0 0 species 1 158500 410 Novosphingobium resinovorum 541 2 genus 0 4 Zymomonas 1 723 719 Zymomonas mobilis 0 542 1 species 329 2685927 1 genus 0 Sphingomonas sp. JJ-A5 329 species 1 1921510 0 Blastomonas 1 408 150203 2 genus 5 0 403 0 2626550 1 no rank 1842535 1 species 0 Blastomonas sp. RAC04 403 1 318 Citromicrobium 0 8 2 72173 genus 310 2630544 1 no rank 0 species 1 1634516 0 Citromicrobium sp. JL477 310 family 335929 22 0 110 Erythrobacteraceae 5479 1 848 0 genus 2 2800681 502682 1 species 0 Erythrobacter gangjinensis 415 0 species 1 1648404 433 Erythrobacter atlanticus 1716 no rank 2800788 6 0 728 1 Porphyrobacter 48 0 genus 1111 3 680 2683265 2 no rank 0 0 2023229 1 species 326 Porphyrobacter HT-58-2 Porphyrobacter sp. LM 6 354 species 1 1896196 0 1041 3 genus 0 98 Erythrobacter 1 988 species 1112 1 0 Porphyrobacter neustonensis 267 623 Erythrobacter litoralis 0 species 1 39960 Croceicoccus 575 1 genus 1295327 3 0 19 1348774 1 species 0 Croceicoccus naphthovorans 228 Croceicoccus marinus 328 species 450378 1 0 1 805 Altererythrobacter 0 100 361177 4 genus 0 species 1 1267766 227 Altererythrobacter atlanticus Altererythrobacter ishigakiensis 228 1 476157 species 0 250 Altererythrobacter epoxidivorans 0 361183 1 species 341 genus 2800682 1 0 0 1 645517 species 341 Altererythrobacter namhicola 450 2 2800686 genus 0 243 Altererythrobacter dongtanensis 0 1 692370 species 1 1982042 species 0 Altererythrobacter mangrovi 207 genus 2 1855416 0 430 0 species 1 266951 205 Erythrobacter seohaensis Erythrobacter flavus 225 1 192812 species 0 0 1 2800685 genus 204 204 Altererythrobacter marensis 0 species 543877 1 Pelagibacterales 1 166507 9 54526 order 0 29 6 1655514 family 0 91 Pelagibacteraceae 1 155348 1 68880 Candidatus Pelagibacter 0 18 3 198251 genus 58276 Candidatus Pelagibacter ubique 0 198252 1 species 2647897 1 no rank 0 10586 species 1002672 1 0 Candidatus Pelagibacter sp. IMCC9063 10586 no rank 2 1655516 0 86377 0 1 744985 species 8058 alpha proteobacterium HIMB59 alpha proteobacterium HIMB5 78319 species 1 859653 0 0 34 genus 2 2045213 11130 1 Candidatus Fonsibacter Candidatus Fonsibacter ubiquis 11096 1925548 1 species 0 no rank 82117 8 0 4738 clade 62654 2 0 3032 0 21 genus 2 767891 3032 1 Candidatus Puniceispirillum 3011 Candidatus Puniceispirillum marinum 0 1 767892 species 991903 2 genus 30 0 Polymorphum 1 666 Polymorphum gilvum 636 species 991904 1 0 0 1 213485 2 genus 1 471 Micavibrio 0 species 349221 1 470 Micavibrio aeruginosavorus 569 1 Phreatobacter 0 15 genus 2 1632780 Phreatobacter sp. S-12 554 1868589 1 species 0 Rhizobiales 79962 1 order 208 356 454 0 2 0 family 45404 5 684 1 Beijerinckiaceae genus 2 532 0 14 Beijerinckia 348 1 Beijerinckia indica 334 1 533 species 0 Methylocella 1 334 2 120652 genus 0 9 Methylocella silvestris 325 species 1 199596 0 Phyllobacteriaceae 1 6917 20 69277 family 0 42 genus 274591 2 14 0 Hoeflea 607 1 0 no rank 1 2614931 593 593 Hoeflea sp. IMCC20628 0 1620421 1 species Aminobacter 512 1 genus 31988 2 0 9 0 1 83263 species 503 Aminobacter aminovorans Mesorhizobium 1 4579 68287 9 genus 0 180 Mesorhizobium australicum 462 species 1 536018 0 547 Mesorhizobium opportunistum 0 species 1 593909 0 381 1 species 519 Mesorhizobium loti 1 1670800 species 0 Mesorhizobium sp. B7 543 1 71433 species 0 Mesorhizobium amorphae 517 708 Mesorhizobium ciceri 0 1 39645 species 0 no rank 325217 1 546 546 Mesorhizobium sp. WSM1497 0 species 1 278153 Mesorhizobium japonicum 557 1 2066070 species 0 16 0 449972 2 genus 1 290 Chelativorans 1 2643807 no rank 0 274 274 Chelativorans sp. BNC1 0 266779 1 species 245876 2 genus 0 16 Nitratireductor 1 493 species 1 472175 0 Nitratireductor basaltis 477 0 6 28100 2 genus 1 394 Phyllobacterium Phyllobacterium zundukense 388 1 1867719 species 0 0 10 family 31993 6 1137 1 Methylocystaceae 1 459 Methylosinus 16 0 2 425 genus Methylosinus trichosporium 443 426 1 species 0 668 1 Methylocystis 27 0 genus 133 3 0 2625913 1 no rank 328 0 1 187303 species 328 Methylocystis sp. SC2 0 655015 1 species 313 Methylocystis bryophila 0 7 family 20 118882 2664 1 Brucellaceae Ochrobactrum 1 1492 528 5 genus 0 31 1 419475 species 0 Ochrobactrum pseudogrignonense 343 species 1 571256 0 Ochrobactrum pituitosum 409 0 species 1 529 321 Ochrobactrum anthropi 271865 1 species 0 Ochrobactrum sp. A44 388 1 1165 Brucella 433 0 234 14 genus 34 Brucella melitensis 0 1 29459 species 236 1 species 0 Brucella ovis 20 Brucella canis 53 1 36855 species 0 Brucella microti 30 444163 1 species 0 0 species 235 1 40 Brucella abortus species 29461 1 0 Brucella suis 91 no rank 4 2632610 0 261 85 Brucella sp. 09RB8471 0 species 1 1149952 0 1844051 1 species 80 Brucella sp. 09RB8910 16 Brucella sp. 2002734562 0 1891098 1 species Brucella sp. 141012304 80 species 1885919 1 0 Brucella ceti 46 species 1 120577 0 59 Brucella pinnipedialis 0 1 120576 species Brucella vulpis 98 species 1 981386 0 1 707 Rhodobiaceae 3 0 3 119043 family 0 26 genus 2 256616 704 1 Parvibaculum Parvibaculum lavamentivorans 678 1 256618 species 0 Aurantimonadaceae 1908 1 family 255475 7 6 0 Martelella 1 1454 293088 4 genus 45 0 2629616 1 no rank 0 479 species 686597 1 0 Martelella sp. AD-3 479 1 293089 species 0 Martelella mediterranea 494 436 Martelella endophytica 0 species 1486262 1 17 0 genus 2 414371 448 1 Aureimonas no rank 2615206 1 0 431 Aureimonas sp. AU20 431 1 1349819 species 0 82115 51 family 0 160 Rhizobiaceae 1 21709 34019 6 genus 0 95 Liberibacter 1 4359 707 Candidatus Liberibacter asiaticus 0 species 34021 1 species 309868 1 0 Candidatus Liberibacter americanus 978 34020 1 species 0 Candidatus Liberibacter africanus 762 1273132 1 species 0 Liberibacter crescens 1029 788 Candidatus Liberibacter solanacearum 0 species 556287 1 genus 2 323620 0 4 Shinella 571 1 567 0 no rank 2643062 1 567 Shinella sp. HZN7 0 species 1 879274 0 no rank 32 227290 12176 379 23 genus 0 540 Rhizobium 1 8482 965 Rhizobium etli 0 species 1 29449 Rhizobium phaseoli 698 species 1 396 0 384 1 species 0 Rhizobium leguminosarum 1919 Rhizobium tropici 329 398 1 species 0 412 Rhizobium gallicum 0 species 1 56730 3619 no rank 17 2613769 0 2 Rhizobium sp. N1341 0 1703962 1 species 1 1571470 species 0 Rhizobium sp. ACO-34A 394 2028343 1 species 0 Rhizobium sp. 10195 324 239 Rhizobium sp. CIAT894 0 species 1 2020312 334 Rhizobium sp. NT-26 0 species 1 1125847 Rhizobium sp. N324 368 species 1703969 1 0 0 species 2048897 1 298 Rhizobium sp. NXC24 Rhizobium sp. Y9 189 species 1 1914541 0 0 424182 1 species 259 Rhizobium sp. IRBG74 1981173 1 species 0 Rhizobium sp. NXC14 215 species 1 1869170 0 Rhizobium sp. S41 222 1 1301032 species 0 Rhizobium sp. IE4771 260 67 Rhizobium sp. N731 0 species 1 1703966 0 species 1703961 1 67 Rhizobium sp. N1314 species 1 2020311 0 Rhizobium sp. Kim5 279 0 species 2020313 1 100 Rhizobium sp. TAL182 0 1703960 1 species 2 Rhizobium sp. N113 5 0 genus 2 1525371 554 1 Neorhizobium 0 species 1 399 549 Neorhizobium galegae Agrobacterium 1 3140 7 357 genus 0 62 0 no rank 2 2632611 675 0 1 1842536 species 410 Agrobacterium sp. RAC06 265 Agrobacterium sp. H13-3 0 species 1 861208 0 1 373 species 315 Agrobacterium vitis 0 359 1 species 282 Agrobacterium rhizogenes 1183400 2 species group 0 1806 319 Agrobacterium fabrum 0 1176649 1 species Agrobacterium tumefaciens 1487 species 1 358 0 0 no rank 227292 10 4443 83 0 genus 28105 7 3683 1 Sinorhizobium 663276 1 species group 0 1141 Sinorhizobium fredii 1141 1 380 species 0 species 1 194963 0 Sinorhizobium americanum 430 382 1 species 0 Sinorhizobium meliloti 892 334 Sinorhizobium medicae 0 species 1 110321 803 2613772 2 no rank 0 338 Sinorhizobium sp. CCBAU 05631 0 species 794846 1 0 1 1842534 species 465 Sinorhizobium sp. RAC02 3 106591 genus 0 16 Ensifer 1 760 716925 1 species 0 Ensifer sojae 328 416 Ensifer adhaerens 0 species 1 106592 Bradyrhizobiaceae 1 12375 41294 26 family 111 0 1 331 Variibacter 0 10 2 1649510 genus Variibacter gotjawalensis 321 species 1 1333996 0 85413 5 genus 95 0 Bosea 1 2028 492 Bosea vaviloviae 0 1 1526658 species 0 no rank 3 2653178 1441 352 Bosea sp. PAMC 26642 0 1792307 1 species Bosea sp. RAC05 559 1842539 1 species 0 0 1 2015316 species 530 Bosea sp. AS-1 2834 1 Rhodopseudomonas 0 26 genus 2 1073 1076 1 species 0 Rhodopseudomonas palustris 2808 1 607 Nitrobacter 0 6 911 3 genus Nitrobacter hamburgensis 316 species 912 1 0 Nitrobacter winogradskyi 285 913 1 species 0 Bradyrhizobium 6130 1 genus 374 11 242 0 0 species 1 44255 542 Bradyrhizobium oligotrophicum 821 Bradyrhizobium diazoefficiens 0 1 1355477 species 461 Bradyrhizobium icense 0 1274631 1 species 789 Bradyrhizobium japonicum 0 1 375 species 3275 0 2631580 6 no rank 524 Bradyrhizobium sp. 0 species 376 1 Bradyrhizobium sp. SK17 535 1 2057741 species 0 288000 1 species 0 Bradyrhizobium sp. BTAi1 540 487 Bradyrhizobium sp. CCGE-LA001 0 species 1 1223566 Bradyrhizobium sp. ORS 278 635 114615 1 species 0 Bradyrhizobium sp. ORS 285 554 1 115808 species 0 Oligotropha 334 1 genus 40136 2 7 0 Oligotropha carboxidovorans 327 40137 1 species 0 Methylobacteriaceae 6437 1 family 119045 15 0 22 9 407 genus 0 193 Methylobacterium 1 3618 2615210 3 no rank 0 1243 0 925818 1 species 344 Methylobacterium sp. AMS5 0 species 1479019 1 358 Methylobacterium sp. C1 541 Methylobacterium sp. 4-46 0 426117 1 species 0 114616 1 species 552 Methylobacterium nodulans species 1 418223 0 Methylobacterium phyllosphaerae 351 341 Methylobacterium oryzae 0 1 334852 species 0 270351 1 species 542 Methylobacterium aquaticum 0 species 1 31998 396 Methylobacterium radiotolerans 464 1 Microvirga 0 8 genus 2 186650 0 species 1882682 1 456 Microvirga ossetica 0 2282523 3 genus 2333 650 Methylobacterium populi 0 species 1 223967 1374 Methylobacterium extorquens 0 1 408 species Methylobacterium zatmanii 309 species 1 29429 0 family 772 18 0 13 Bartonellaceae 16371 1 1 16358 Bartonella 0 321 773 17 genus Bartonella vinsonii 942 33047 1 species 0 914 Bartonella tribocorum 0 species 85701 1 species 774 1 0 Bartonella bacilliformis 1060 Bartonella clarridgeiae 1129 1 56426 species 0 923 Bartonella grahamii 0 species 33045 1 0 388640 1 species 506 Bartonella australis 0 species 1 803 816 Bartonella quintana 0 6 2645622 no rank 6952 1174 Bartonella sp. A1379B 0 species 1 1933910 species 1 1933912 0 Bartonella sp. Raccoon60 1150 515256 1 species 0 Bartonella sp. 1-1C 1118 0 1 1933906 species 1197 Bartonella sp. JB15 0 species 1933907 1 1201 Bartonella sp. JB63 species 1933904 1 0 Bartonella sp. WD16.2 1112 919 Bartonella apis 0 species 1 1686310 970 Bartonella ancashensis 0 species 1318743 1 0 38323 1 species 906 Bartonella henselae family 45401 19 0 25 Hyphomicrobiaceae 4578 1 0 9 genus 2 119044 356 1 Filomicrobium species 1 1608628 0 Candidatus Filomicrobium marinum 347 46913 4 genus 46 0 Devosia 1 1358 1312 0 196773 3 no rank 0 species 1643450 1 444 Devosia sp. H5989 species 1 2083786 0 Devosia sp. I507 363 species 1 1736675 0 Devosia sp. A16 505 0 2 genus 2 59282 454 1 Blastochloris 0 species 1 1079 452 Blastochloris viridis Rhodoplanes 556 1 genus 29407 2 0 10 0 no rank 1 2619116 546 546 Rhodoplanes sp. Z2-YC6860 0 1 674703 species genus 1082930 2 0 6 Pelagibacterium 350 1 Pelagibacterium halotolerans 344 1 531813 species 0 0 6 1068 2 genus 1 338 Rhodomicrobium 332 Rhodomicrobium vannielii 0 1069 1 species 49 0 81 4 genus 1 1141 Hyphomicrobium 455 1 2619925 no rank 0 455 Hyphomicrobium sp. MC1 0 1 717785 species 270 Hyphomicrobium nitrativorans 0 species 1427356 1 species 53399 1 0 Hyphomicrobium denitrificans 367 0 119042 6 no rank 1449 Methyloceanibacter 1 401 1484898 2 genus 0 25 1384459 1 species 0 Methyloceanibacter caenitepidi 376 genus 1572860 2 0 8 Hartmannibacter 560 1 Hartmannibacter diazotrophicus 552 1482074 1 species 0 488 1 Pseudorhodoplanes 0 11 genus 1734920 2 477 Pseudorhodoplanes sinuspersici 0 species 1 1235591 Chelatococcaceae 1 1071 4 2036754 family 10 0 1061 1 Chelatococcus 0 25 genus 3 28209 0 2638111 1 no rank 541 541 Chelatococcus sp. CO-6 0 species 1702325 1 Chelatococcus daeguensis 495 species 444444 1 0 1501 1 Xanthobacteraceae 0 25 family 7 335928 9 0 6 2 genus 1 398 Azorhizobium 0 7 1 species 389 Azorhizobium caulinodans 0 12 279 2 genus 1 541 Xanthobacter Xanthobacter autotrophicus 529 species 1 280 0 22 0 152053 2 genus 1 537 Starkeya Starkeya novella 515 species 1 921 0 22414 1 Rhodospirillales 0 145 order 67 204441 7737 1 Acetobacteraceae 0 108 family 35 433 38 0 genus 3 522 892 1 Acidiphilium Acidiphilium cryptum 400 524 1 species 0 0 1 62140 species 454 Acidiphilium multivorum 2 364409 genus 0 5 Granulibacter 1 555 1 364410 species 0 Granulibacter bethesdensis 550 1 1168 Komagataeibacter 39 0 5 1434011 genus 0 species 1 265960 324 Komagataeibacter nataicola 0 33995 1 species 188 Komagataeibacter europaeus 28448 1 species 0 Komagataeibacter xylinus 397 Komagataeibacter medellinensis 220 species 1177712 1 0 Asaia 1 175 91914 2 genus 3 0 Asaia bogorensis 172 species 91915 1 0 Roseomonas 934 1 genus 125216 3 0 23 0 2617492 1 no rank 477 0 species 1 2018065 477 Roseomonas sp. FDAARGOS_362 Roseomonas gilardii 434 species 257708 1 0 Kozakia 230 1 genus 153497 2 2 0 228 Kozakia baliensis 0 species 153496 1 Gluconacetobacter 1 359 89583 2 genus 0 1 358 Gluconacetobacter diazotrophicus 0 species 1 33996 7 0 3 441 genus 1 554 Gluconobacter 0 species 318683 1 159 Gluconobacter albidus 1 442 species 0 Gluconobacter oxydans 388 0 36 genus 434 8 2424 1 Acetobacter 0 1 1633874 species 247 Acetobacter oryzifermentans 235 Acetobacter pomorum 0 species 65959 1 0 species 1076596 1 246 Acetobacter persici Acetobacter tropicalis 305 species 104102 1 0 Acetobacter senegalensis 219 446692 1 species 0 935 Acetobacter pasteurianus 0 species 1 438 201 0 subgenus 1 151157 201 Acetobacter aceti 0 species 1 435 2 0 genus 1602345 2 150 1 Parasaccharibacter 1510841 1 species 0 Parasaccharibacter apium 148 188 1 Neoasaia 0 3 genus 320496 2 0 320497 1 species 185 Neoasaia chiangmaiensis 0 194 41295 31 family 1 14532 Rhodospirillaceae Candidatus Endolissoclinum 1782 1 genus 1263978 2 0 3 1779 Candidatus Endolissoclinum faulkneri 0 1263979 1 species Azospirillum 4119 1 genus 5 191 0 128 402 Azospirillum humicireducens 0 species 1 1226968 Azospirillum thiophilum 877 528244 1 species 0 Azospirillum brasilense 1255 1 192 species 0 1457 Azospirillum lipoferum 0 species 193 1 genus 3 1081 0 20 Rhodospirillum 1139 1 0 species 34018 1 638 Rhodospirillum centenum Rhodospirillum rubrum 481 species 1 1085 0 1 370 Haematospirillum 14 0 2 1804663 genus 356 Haematospirillum jordaniae 0 1 1549855 species 101 0 genus 13134 5 2503 1 Magnetospirillum 0 55518 1 species 672 Magnetospirillum gryphiswaldense species 84159 1 0 Magnetospirillum magneticum 525 1205 0 no rank 2 2617991 species 1 1639348 0 Magnetospirillum sp. ME-1 595 species 1 1663591 0 Magnetospirillum sp. XM-1 610 Niveispirillum 1 489 2 1543704 genus 0 8 1 1612173 species 0 Niveispirillum cyanobacteriorum 481 Pararhodospirillum 1 363 1612157 2 genus 4 0 Pararhodospirillum photometricum 359 species 1 1084 0 genus 3 168934 38 0 Thalassospira 1482 1 713 Thalassospira sp. CSC3H3 0 2048283 1 species Thalassospira xiamenensis 731 species 1 220697 0 Tistrella 1 821 2 171436 genus 0 30 Tistrella mobilis 791 171437 1 species 0 Nitrospirillum 698 1 genus 2 1543705 5 0 28077 1 species 0 Nitrospirillum amazonense 693 0 4 genus 2 1182780 572 1 Magnetospira 2685734 1 no rank 0 568 1288970 1 species 0 Magnetospira sp. QH-2 568 69321 196 68525 subphylum 0 35 0 class 29547 70 40717 1 Epsilonproteobacteria 0 81 213849 64 order 1 39809 Campylobacterales Campylobacteraceae 1 33100 41 72294 family 0 95 genus 57665 9 0 41 Sulfurospirillum 2620 1 0 1 66821 species 278 Sulfurospirillum multivorans 159 Sulfurospirillum cavolei 0 species 366522 1 species 1 65553 0 Sulfurospirillum deleyianum 350 species 1 44674 0 Sulfurospirillum barnesii 299 0 2618290 3 no rank 1263 0 species 1 1986224 421 Sulfurospirillum sp. SL2-1 220622 1 species 0 Sulfurospirillum sp. JPD-1 343 499 Sulfurospirillum sp. UCH001 0 1581011 1 species 1 194424 species 0 Sulfurospirillum halorespirans 230 9560 0 2321108 5 no rank 2361 0 genus 1 2321187 Arcobacter sp. LPB0137 2361 species 1 1850254 0 2297 2321207 1 no rank 0 2297 Arcobacter sp. L 0 species 1 944547 3 28196 genus 54 0 Arcobacter 1 4902 3059 Arcobacter butzleri 0 1 28197 species Arcobacter nitrofigilis 1789 28199 1 species 0 Campylobacter 1 20825 26 194 genus 158 0 0 species 1 195 1321 Campylobacter coli Campylobacter cuniculorum 709 374106 1 species 0 species 1 197 0 Campylobacter jejuni 1787 species 1 1244531 0 Campylobacter iguaniorum 433 962 Campylobacter subantarcticus 0 species 497724 1 421 Campylobacter helveticus 0 species 28898 1 881 Campylobacter volucris 0 1 1031542 species Campylobacter concisus 534 1 199 species 0 650 Campylobacter hyointestinalis 0 species 1 198 0 522485 1 species 449 Campylobacter avium 492 Campylobacter hominis 0 1 76517 species 0 species 1 488546 803 Campylobacter peloridis 0 species 1 200 100 Campylobacter curvus 367 Campylobacter lanienae 0 1 75658 species 1245 Campylobacter pinnipediorum 0 species 1965231 1 species 1 824 0 Campylobacter gracilis 92 Campylobacter lari 2407 species 201 1 0 species 827 1 0 Campylobacter ureolyticus 1061 1 196 species 0 Campylobacter fetus 818 Campylobacter sputorum 1485 206 1 species 0 2597 0 4 2593542 no rank 578 Campylobacter sp. RM12175 0 1660076 1 species Campylobacter sp. RM8964 653 1660074 1 species 0 0 species 1 1500960 925 Campylobacter sp. RM16704 Campylobacter sp. RM6137 441 1660073 1 species 0 0 260714 1 species 1053 Campylobacter insulaenigrae 0 13 72293 14 family 1 4772 Helicobacteraceae 123 843 1 genus 0 123 Wolinella succinogenes 0 species 844 1 0 24 genus 12 209 4636 1 Helicobacter species 1 214 0 Helicobacter felis 107 species 1 212 0 Helicobacter acinonychis 172 species 37372 1 0 Helicobacter bilis 317 Helicobacter cetorum 537 species 1 138563 0 Helicobacter pylori 1891 210 1 species 0 Helicobacter hepaticus 387 32025 1 species 0 262 0 1 2593540 no rank 0 species 1 222136 262 Helicobacter sp. MIT 01-6242 186 Helicobacter mustelae 0 species 1 217 1 76936 species 0 Helicobacter typhlonius 270 Helicobacter himalayensis 232 species 1591088 1 0 0 213 1 species 251 Helicobacter cinaedi 1303 family 2771471 4 0 11 0 3 202746 genus 1 1150 Sulfurimonas 202747 1 species 0 Sulfurimonas autotrophica 488 39766 1 species 0 Sulfurimonas denitrificans 651 153 genus 1 286130 0 1 148813 species 0 Sulfuricurvum kujiense 153 0 family 2771472 4 553 143 269260 1 genus 0 1 269261 species 0 Nitratifractor salsuginis 143 410 1 Sulfurovum 0 14 genus 265570 3 206 Sulfurovum lithotrophicum 0 206403 1 species 190 0 2646778 1 no rank 0 species 387093 1 190 Sulfurovum sp. NBC37-1 5 235899 order 0 2 Nautiliales 1 873 0 family 2795691 1 274 0 genus 1 269258 274 0 no rank 1 2624044 274 274 Nitratiruptor sp. SB155-2 0 species 387092 1 3 224467 family 4 0 Nautiliaceae 1 597 Nautilia 593 1 genus 191291 2 4 0 1 244787 species 0 Nautilia profundicola 589 Deltaproteobacteria 1 28604 126 28221 class 45 0 order 5 213113 0 2 Desulfurellales 1288 1 117942 4 family 0 2 Desulfurellaceae 1 1286 358 0 1 84404 genus Hippea maritima 358 1 84405 species 0 0 1 33001 2 genus 1 926 Desulfurella 925 Desulfurella acetivorans 0 33002 1 species order 29 37 0 156 Myxococcales 14853 1 1290 0 3 224462 suborder family 224464 3 8 0 Kofleriaceae 1290 1 1282 1 Haliangium 0 4 genus 162027 2 Haliangium ochraceum 1278 species 1 80816 0 5085 0 suborder 80812 7 0 7 family 4 49 4057 1 Polyangiaceae 10 0 genus 2 39643 3273 1 Sorangium 1 56 species 0 Sorangium cellulosum 3263 0 genus 50 1 777 Chondromyces crocatus 777 1 52 species 0 Sandaracinaceae 1028 1 family 1055686 3 2 0 Sandaracinus 1 1026 1055688 2 genus 2 0 1024 Sandaracinus amylolyticus 0 927083 1 species 80811 26 suborder 0 8322 Myxococcaceae 3572 1 family 9 31 16 0 genus 32 5 70 0 Myxococcus 2518 1 species 83455 1 0 Myxococcus stipitatus 526 0 1297742 1 species 546 Myxococcus hansupus Myxococcus fulvus 979 1 33 species 0 0 species 34 1 397 Myxococcus xanthus genus 3 83461 0 16 Corallococcus 1038 1 species 35 1 0 Myxococcus macrosporus 443 1 184914 species 0 Corallococcus coralloides 579 39 9 family 31 0 Archangiaceae 1 2618 genus 42 2 9 0 Cystobacter 621 1 Cystobacter fuscus 612 43 1 species 0 0 2 47 2 genus 1 1049 Archangium 1047 Archangium gephyra 0 48 1 species 2 40 genus 0 9 Stigmatella 1 463 0 species 1 41 454 Stigmatella aurantiaca 1 454 Melittangium 0 3 44 2 genus 451 Melittangium boletus 0 species 1 83453 1 1745 Anaeromyxobacteraceae 10 0 1524215 5 family 1 1735 Anaeromyxobacter 0 34 4 161492 genus 2 2620896 no rank 0 895 468 Anaeromyxobacter sp. Fw109-5 0 species 404589 1 427 Anaeromyxobacter sp. K 0 species 1 447217 Anaeromyxobacter dehalogenans 806 161493 1 species 0 4 0 family 3 1524213 387 1 Vulgatibacteraceae genus 1524214 2 2 0 Vulgatibacter 383 1 Vulgatibacter incomptus 381 species 1391653 1 0 order 26 213115 0 26 Desulfovibrionales 3879 1 family 194924 18 31 0 Desulfovibrionaceae 3445 1 4 2035811 genus 0 7 Pseudodesulfovibrio 1 494 125 Pseudodesulfovibrio profundus 0 species 1 57320 Pseudodesulfovibrio indicus 177 1716143 1 species 0 0 species 1 182210 185 Pseudodesulfovibrio aespoeensis genus 9 872 0 24 Desulfovibrio 1720 1 0 2593640 1 no rank 85 85 Desulfovibrio sp. G11 0 species 1 631220 215 Desulfovibrio alaskensis 0 58180 1 species Desulfovibrio desulfuricans 283 1 876 species 0 species 1 1725232 0 Candidatus Desulfovibrio trichonymphae 61 298 Desulfovibrio magneticus 0 species 184917 1 Desulfovibrio fairfieldensis 112 species 44742 1 0 species 1 901 0 Desulfovibrio piger 110 Desulfovibrio vulgaris 532 881 1 species 0 Lawsonia 1 752 41707 2 genus 0 1 Lawsonia intracellularis 751 1 29546 species 0 162 genus 1 2582840 0 162 Desulfovibrio africanus 0 1 873 species 286 0 genus 2794998 1 Desulfovibrio salexigens 286 species 1 880 0 family 213117 3 0 1 Desulfohalobiaceae 108 1 Desulfohalobium 107 1 genus 2 45662 0 4 species 1 45663 0 Desulfohalobium retbaense 103 4 213116 family 5 0 Desulfomicrobiaceae 1 300 Desulfomicrobium 295 1 genus 3 898 0 10 species 899 1 0 Desulfomicrobium baculatum 152 0 species 132132 1 133 Desulfomicrobium orale 453227 3 order 1 0 Desulfarculales 1 265 Desulfarculaceae 264 1 family 453228 2 7 0 257 0 1 453229 genus species 1 453230 0 Desulfarculus baarsii 257 Syntrophobacterales 1 759 10 213462 order 9 0 0 4 family 3 213465 181 1 Syntrophobacteraceae Syntrophobacter 1 177 2 29526 genus 0 7 170 Syntrophobacter fumaroxidans 0 species 1 119484 213468 6 family 6 0 Syntrophaceae 1 569 216 1 Desulfomonile 0 2 genus 2 2357 2358 1 species 0 Desulfomonile tiedjei 214 genus 1 43773 0 173 Syntrophus aciditrophicus 173 1 316277 species 0 Desulfobacca 174 1 genus 60892 2 1 0 173 Desulfobacca acetoxidans 0 species 60893 1 4094 1 Desulfuromonadales 52 0 order 69541 24 20 0 family 14 213422 2745 1 Geobacteraceae 245 1 Geoalkalibacter 15 0 genus 392332 2 species 483547 1 0 Geoalkalibacter subterraneus 230 28231 11 genus 53 0 Geobacter 1 2480 0 1 225194 species 240 Geobacter bemidjiensis Geobacter daltonii 180 1 1203471 species 0 Geobacter anodireducens 174 species 1340425 1 0 0 species 1 313985 144 Geobacter lovleyi 1 345632 species 0 Geobacter pickeringii 187 28232 1 species 0 Geobacter metallireducens 282 533 0 no rank 2627627 2 320 Geobacter sp. M18 0 1 443143 species 213 Geobacter sp. M21 0 species 443144 1 Geobacter uraniireducens 497 1 351604 species 0 0 species 1 35554 190 Geobacter sulfurreducens 0 12 9 213421 family 1 1297 Desulfuromonadaceae 1 687 Pelobacter 0 21 5 18 genus 0 no rank 1 2620299 196 species 1 1842532 0 Pelobacter sp. SFB93 196 1 19 species 0 Pelobacter carbinolicus 162 149 Pelobacter acetylenicus 0 species 1 29542 0 species 1 29543 159 Pelobacter propionicus 3 890 genus 0 12 Desulfuromonas 1 598 1 2614637 no rank 0 200 Desulfuromonas sp. DDH964 200 species 1823759 1 0 0 species 1603606 1 386 Desulfuromonas soudanensis 1 3421 Desulfobacterales 0 24 213118 20 order 16 0 9 213121 family 1 1082 Desulfobulbaceae 1 381 Desulfotalea 0 8 109168 2 genus 84980 1 species 0 Desulfotalea psychrophila 373 2 53318 genus 0 1 Desulfocapsa 1 332 65555 1 species 0 Desulfocapsa sulfexigens 331 genus 2 893 2 0 Desulfobulbus 186 1 1 1986146 species 0 Desulfobulbus sp. ORNL 184 0 2 427922 2 genus 1 167 Desulfurivibrio 427923 1 species 0 Desulfurivibrio alkaliphilus 165 10 213119 family 20 0 Desulfobacteraceae 1 2315 1 747 Desulfobacula 0 5 28222 2 genus 28223 1 species 0 Desulfobacula toluolica 742 Desulfobacterium 229 1 genus 2 2295 5 0 224 Desulfobacterium autotrophicum 0 1 2296 species Desulfococcus 1 510 896 3 genus 3 0 897 1 species 0 Desulfococcus multivorans 232 Desulfococcus oleovorans 275 181663 1 species 0 809 1 Desulfatibacillum 10 0 genus 2 218207 1 259354 species 0 Desulfatibacillum alkenivorans 799 2 0 class 11 1553900 2660 1 Oligoflexia Bdellovibrionales 1 1110 213481 5 order 0 7 213483 4 family 0 1 Bdellovibrionaceae 1 1103 genus 958 3 3 0 Bdellovibrio 1102 1 380 Bdellovibrio exovorus 0 species 1 453816 species 1 959 0 Bdellovibrio bacteriovorus 719 Bacteriovoracales 1 1548 2024979 5 order 0 8 0 family 1652132 2 1130 2 1652133 genus 3 0 Halobacteriovorax 1 1130 species 97084 1 0 Halobacteriovorax marinus 1127 410 1 Bacteriovoracaceae 1 0 family 2 263369 0 1 146784 genus 409 1 960 species 0 Bacteriovorax stolpii 409 0 580370 5 class 433 1 433 Mariprofundales 14 0 580371 5 order 4 0 580372 4 family 1 419 Mariprofundaceae genus 3 377315 0 7 Mariprofundus 415 1 214 Mariprofundus ferrinatatus 0 species 1921087 1 species 1 1921086 0 Mariprofundus aestuarium 194 1 102754 Betaproteobacteria 134 0 345 28216 class order 32003 42 0 55 Nitrosomonadales 6933 1 family 5 90627 0 4 Gallionellaceae 379 1 0 3 2 96 genus 1 164 Gallionella 370405 1 species 0 Gallionella capsiferriformans 161 genus 314343 2 0 1 Sideroxydans 211 1 Sideroxydans lithotrophicus 210 species 63745 1 0 0 4 2008790 3 family 1 274 Thiobacillaceae 2 919 genus 1 0 Thiobacillus 1 270 0 species 1 36861 269 Thiobacillus denitrificans Sterolibacteriaceae 574 1 family 2008793 5 9 0 3 0 2 378210 genus 1 272 Methyloversatilis 0 1 2639971 no rank 269 0 species 1 1842540 269 Methyloversatilis sp. RAC08 1 293 Sulfuritalea 0 4 2 1054211 genus species 748811 1 0 Sulfuritalea hydrogenivorans 289 12 206379 family 6 0 Nitrosomonadaceae 1 2760 0 3 35798 4 genus 1 483 Nitrosospira 139 Nitrosospira multiformis 0 species 1231 1 Nitrosospira lacus 134 species 1288494 1 0 Nitrosospira briensis 207 species 1 35799 0 7 914 genus 14 0 Nitrosomonas 1 2271 no rank 2609265 2 0 905 0 1 261292 species 430 Nitrosomonas sp. Is79A3 0 1 153948 species 475 Nitrosomonas sp. AL212 915 1 species 0 Nitrosomonas europaea 208 468 Nitrosomonas communis 0 44574 1 species 0 44577 1 species 356 Nitrosomonas ureae 0 species 1 916 320 Nitrosomonas eutropha family 32011 14 21 0 Methylophilaceae 2526 1 3 81682 genus 0 13 Methylovorus 1 335 162 1 2634027 no rank 0 0 species 887061 1 162 Methylovorus sp. MP688 1 266009 species 0 Methylovorus glucosotrophus 160 genus 16 2 1 0 Methylophilus 195 1 194 1 2630143 no rank 0 0 1 1662285 species 194 Methylophilus sp. TWE2 2 404 genus 0 4 Methylobacillus 1 136 Methylobacillus flagellatus 132 species 1 405 0 Methylotenera 1 731 359407 3 genus 9 0 species 359408 1 0 Methylotenera mobilis 287 435 Methylotenera versatilis 0 species 1055487 1 1 1108 Candidatus Methylopumilus 0 7 3 1679002 genus Candidatus Methylopumilus turicensis 278 1581680 1 species 0 1 1581557 species 0 Candidatus Methylopumilus planktonicus 823 365 0 2 2772226 family 194 genus 1 935200 0 194 Sulfuricella denitrificans 0 species 649841 1 genus 1778653 1 0 171 1 2637784 no rank 0 171 0 1985873 1 species 171 Sulfuriferula sp. AH1 624 no rank 2 33809 0 beta proteobacterium CB 340 species 1 543913 0 Betaproteobacteria bacterium GR16-43 284 species 1904640 1 0 60 0 206351 36 order 1 6069 Neisseriales Chromobacteriaceae 2243 1 family 13 1499392 47 0 203 1 Laribacter 0 2 genus 2 168470 0 1 168471 species 201 Laribacter hongkongensis 1 221 Aquaspirillum 0 5 2 187 genus no rank 1 2620219 0 216 species 1 1938604 0 Aquaspirillum sp. LM1 216 1 297 Jeongeupia 0 2 885864 2 genus 295 no rank 2619593 1 0 Jeongeupia sp. USM3 295 species 1906741 1 0 genus 568394 2 2 0 Pseudogulbenkiania 284 1 282 0 2642558 1 no rank Pseudogulbenkiania sp. NH8B 282 748280 1 species 0 0 90153 4 no rank 1191 0 21 4 535 genus 1 1191 Chromobacterium Chromobacterium vaccinii 486 1 1108595 species 0 350 0 no rank 2641838 1 1 2059672 species 0 Chromobacterium sp. ATCC 53434 350 species 536 1 0 Chromobacterium violaceum 334 3766 1 Neisseriaceae 0 21 family 481 22 59 3 genus 0 12 Vitreoscilla 1 480 0 1 63 species 142 Vitreoscilla filiformis no rank 2627922 1 0 326 Vitreoscilla sp. C1 326 species 1 96942 0 Simonsiella 301 1 genus 2 71 2 0 0 1 72 species 299 Simonsiella muelleri Neisseria 1882 1 genus 12 482 0 38 0 1 486 species 172 Neisseria lactamica species 1 490 0 Neisseria sicca 106 110 Neisseria mucosa 0 species 488 1 326523 1 species 0 Neisseria zoodegmatis 154 Neisseria elongata 115 1 495 species 0 Neisseria weaveri 161 28091 1 species 0 485 1 species 0 Neisseria gonorrhoeae 164 species 1 487 0 Neisseria meningitidis 500 123 Neisseria sp. 10023 0 species 1853278 1 0 no rank 2 2623750 239 Neisseria sp. 10022 101 species 1853276 1 0 Neisseria sp. KEM232 138 species 1 655307 0 0 1 421605 no rank 628 1 2052837 species 0 Neisseriaceae bacterium DSM 100970 628 0 1 genus 1193515 2 338 1 Snodgrassella Snodgrassella alvi 337 1 1196083 species 0 0 538 1 genus 116 Eikenella corrodens 116 species 1 539 0 5116 0 no rank 13 119066 202 1 Candidatus Nasuia 2 0 genus 2 1301080 species 1160784 1 0 Candidatus Nasuia deltocephalinicola 200 745 1 Candidatus Profftella 6 0 genus 2 1381133 0 669502 1 species 739 Candidatus Profftella armatura 1 3812 Kinetoplastibacterium 0 24 33055 6 genus 1 994696 species 0 Candidatus Kinetoplastibacterium oncopeltii 600 Candidatus Kinetoplastibacterium galatii 655 species 994695 1 0 Candidatus Kinetoplastibacterium desouzaii 990 1 994692 species 0 Candidatus Kinetoplastibacterium crithidii 904 species 33056 1 0 Kinetoplastibacterium blastocrithidii 639 233181 1 species 0 genus 2 327159 0 5 Candidatus Accumulibacter 276 1 0 1 327160 species 271 Candidatus Accumulibacter phosphatis 81 genus 189384 1 0 81 Candidatus Tremblaya princeps 0 1 189385 species 1 79959 Burkholderiales 0 726 80840 229 order 7206 1 Oxalobacteraceae 43 0 family 28 75682 Massilia 1 1910 149698 6 genus 33 0 380 Massilia putida 0 1 1141883 species 0 2072590 1 species 387 Massilia sp. ZMN-3 417 Massilia sp. B2 0 2045208 1 species 693 2609279 2 no rank 0 Massilia sp. WG5 379 1707785 1 species 0 1 1678028 species 0 Massilia sp. NR 4-1 314 5 0 genus 303379 3 370 1 Herminiimonas 166 Herminiimonas arsenicoxydans 0 204773 1 species 0 1809410 1 species 199 Herminiimonas arsenitoxidans 1781 1 Herbaspirillum 0 19 genus 6 963 Herbaspirillum seropedicae 434 species 1 964 0 0 1 2624150 no rank 266 0 species 2025949 1 266 Herbaspirillum sp. meg3 80842 1 species 0 Herbaspirillum rubrisubalbicans 253 0 species 1 341045 426 Herbaspirillum hiltneri 0 species 1 92645 383 Herbaspirillum frisingense 0 genus 1 846 136 1 847 species 0 Oxalobacter formigenes 136 1816 1 Janthinobacterium 0 24 genus 7 29580 1 55508 species 0 Janthinobacterium agaricidamnosum 282 0 4 2610881 no rank 1138 Janthinobacterium sp. B9-8 262 1 1236179 species 0 species 1644131 1 0 Janthinobacterium sp. 1_2014MBL_MicDiv 399 species 1938606 1 0 Janthinobacterium sp. LM6 293 184 Janthinobacterium sp. Marseille 0 species 1 375286 372 Janthinobacterium svalbardensis 0 368607 1 species 4 202907 genus 25 0 Collimonas 1 1150 0 1 158899 species 367 Collimonas fungivorans 1 279113 species 0 Collimonas pratensis 305 0 279058 1 species 453 Collimonas arenae 3885 0 224471 17 no rank 412 1 Rhizobacter 15 0 genus 212743 2 0 species 1 946333 397 Rhizobacter gummiphilus Paucibacter 1 358 2 318147 genus 5 0 353 2642959 1 no rank 0 species 1 1768242 0 Paucibacter sp. KCTC 42545 353 563 [Polyangium] brachysporum 0 413882 1 species Rubrivivax 1 483 28067 2 genus 0 10 Rubrivivax gelatinosus 473 species 1 28068 0 genus 316612 2 0 10 Methylibium 350 1 340 Methylibium petroleiphilum 0 1 105560 species 88 2 genus 0 5 Leptothrix 1 349 species 34029 1 0 Leptothrix cholodnii 344 Roseateles 553 1 genus 2 93681 0 14 Roseateles depolymerans 539 species 76731 1 0 Mitsuaria 1 479 65047 2 genus 0 10 0 no rank 2648776 1 469 1 1658665 species 0 Mitsuaria sp. 7 469 2 32012 genus 0 7 Thiomonas 1 338 Thiomonas intermedia 331 926 1 species 0 427 2 80841 no rank 0 224 Burkholderiales bacterium YL45 0 species 1834205 1 1469502 1 species 0 Burkholderiales bacterium GJ-E10 203 Comamonadaceae 14410 1 family 54 80864 0 140 genus 1436289 1 0 142 142 Candidatus Symbiobacter mobilis 0 1436290 1 species 889 1 Hydrogenophaga 0 3 genus 47420 4 250 Hydrogenophaga crassostreae 0 species 1763535 1 636 no rank 2 2610897 0 0 1 795665 species 352 Hydrogenophaga sp. PBC 0 species 1 1842537 284 Hydrogenophaga sp. RAC07 201 2678886 1 genus 0 Melaminivora sp. SC2-7 201 species 2116657 1 0 Acidovorax 1 1998 9 12916 genus 0 68 Acidovorax citrulli 249 species 1 80869 0 721785 1 species 0 Acidovorax ebreus 213 181 Acidovorax sp. NA3 0 species 1 553814 Acidovorax avenae 341 1 80867 species 0 946 0 no rank 4 2684926 Acidovorax sp. JS42 218 species 1 232721 0 195 Acidovorax sp. RAC01 0 1 1842533 species 1858609 1 species 0 Acidovorax sp. T1 304 Acidovorax sp. KKS102 229 species 1 358220 0 genus 52972 3 2 0 Polaromonas 1042 1 Polaromonas naphthalenivorans 286 216465 1 species 0 754 0 1 2638319 no rank 754 Polaromonas sp. JS666 0 1 296591 species 548 genus 174951 1 0 94132 1 species 0 Ramlibacter tataouinensis 548 1 201096 genus 0 337 Alicycliphilus denitrificans 337 species 179636 1 0 190 genus 1 352450 0 Simplicispira sp. SC1-8 190 1 2109915 species 0 0 genus 2490452 2 376 0 species 1458426 1 200 Comamonadaceae bacterium B1 176 Comamonadaceae bacterium A1 0 1458425 1 species 28065 5 genus 12 0 Rhodoferax 1 904 Rhodoferax ferrireducens 236 species 1 192843 0 125 Rhodoferax saidenbachensis 0 1 1484693 species 331 Rhodoferax koreense 0 species 1 1842727 200 Rhodoferax antarcticus 0 species 1 81479 genus 34072 5 0 28 Variovorax 3042 1 Variovorax boronicumulans 399 1 436515 species 0 1 34073 species 0 Variovorax paradoxus 1658 no rank 663243 2 0 957 Variovorax sp. PAMC 28711 472 species 1795631 1 0 species 1 2126319 0 Variovorax sp. PMC12 485 38 0 5 80865 genus 1 1628 Delftia 0 species 1 80866 369 Delftia acidovorans species 1 180282 0 Delftia tsuruhatensis 368 853 0 2613839 2 no rank 0 species 1 742013 458 Delftia sp. Cs1-4 1920191 1 species 0 Delftia sp. HK171 395 219181 3 genus 6 0 Ottowia 1 423 182 no rank 1 2645081 0 Ottowia sp. oral taxon 894 182 species 1658672 1 0 235 Ottowia sp. KADR8-3 0 1 2109914 species 0 genus 665874 2 280 0 no rank 2 2626134 280 0 species 1678129 1 112 Limnohabitans sp. 103DPR2 0 1678128 1 species 168 Limnohabitans sp. 63ED37-2 genus 4 283 0 7 Comamonas 1333 1 0 species 225992 1 310 Comamonas kerstersii 0 species 1 285 519 Comamonas testosteroni Comamonas serinivorans 497 1082851 1 species 0 2 364316 genus 0 3 Verminephrobacter 1 509 Verminephrobacter eiseniae 506 species 1 364317 0 0 9 genus 1649468 2 238 1 Melaminivora 229 no rank 1 2641902 0 Melaminivora sp. SC2-9 229 1 2109913 species 0 Diaphorobacter 1 190 238749 2 genus 1 0 Diaphorobacter polyhydroxybutyrativorans 189 1 1546149 species 0 12007 1 Alcaligenaceae 52 0 family 43 506 263 0 90243 1 genus 0 1 90245 species 263 Oligella urethralis Alcaligenes 1 738 2 507 genus 0 1 species 1 511 0 Alcaligenes faecalis 737 Basilea 1 361 2 1472344 genus 4 0 Basilea psittacipulmonis 357 species 1472345 1 0 genus 1100891 2 6 0 Paenalcaligenes 305 1 0 species 1 643674 299 Paenalcaligenes hominis Castellaniella 234 1 genus 359336 2 0 6 species 75697 1 0 Castellaniella defragrans 228 0 119 genus 17 517 4693 1 Bordetella Bordetella flabilis 277 species 1 463014 0 224 0 no rank 2630031 1 0 species 1697043 1 224 Bordetella sp. H567 Bordetella pseudohinzii 239 1 1331258 species 0 Bordetella avium 150 species 1 521 0 0 species 1 463024 354 Bordetella genomosp. 6 1 520 species 0 Bordetella pertussis 291 Bordetella holmesii 181 species 35814 1 0 0 1 463040 species 320 Bordetella genomosp. 13 Bordetella hinzii 257 1 103855 species 0 Bordetella bronchiseptica 675 species 518 1 0 Bordetella parapertussis 352 species 519 1 0 Bordetella petrii 246 species 1 94624 0 Bordetella genomosp. 8 262 species 1 1416806 0 227 Bordetella trematum 0 species 1 123899 205 Bordetella genomosp. 9 0 species 1 1416803 0 species 1 463025 314 Bordetella bronchialis 475 1 Advenella 0 10 genus 3 290425 233 Advenella mimigardefordensis 0 species 302406 1 Advenella kashmirensis 232 1 310575 species 0 genus 1921582 2 0 3 Orrella 221 1 Orrella dioscoreae 218 1851544 1 species 0 1 1213 Taylorella 0 9 29574 3 genus 0 species 84590 1 640 Taylorella asinigenitalis species 29575 1 0 Taylorella equigenitalis 564 1 3257 Achromobacter 0 72 6 222 genus species 1 32002 0 Achromobacter denitrificans 690 1236 Achromobacter xylosoxidans 0 species 1 85698 0 no rank 1 2626865 343 343 Achromobacter sp. AONIH1 0 species 1758194 1 372 Achromobacter insolitus 0 1 217204 species 1 217203 species 0 Achromobacter spanius 544 195 1 Pusillimonas 0 1 genus 305976 2 0 2640016 1 no rank 194 194 Pusillimonas sp. T7-7 0 1 1007105 species Burkholderiaceae 41298 1 family 119060 84 141 0 1 2838 Pandoraea 0 35 10 93217 genus Pandoraea vervacti 303 1 656178 species 0 0 93220 1 species 370 Pandoraea pnomenusa species 1 93218 0 Pandoraea apista 221 93222 1 species 0 Pandoraea sputorum 205 1 656179 species 0 Pandoraea faecigallinarum 212 species 1 93219 0 Pandoraea norimbergensis 351 Pandoraea oxalativorans 287 species 573737 1 0 Pandoraea thiooxydans 227 445709 1 species 0 Pandoraea pulmonicola 627 93221 1 species 0 44013 4 genus 0 17 Polynucleobacter 1 1151 532 Polynucleobacter asymbioticus 0 1 576611 species 275 Polynucleobacter necessarius 0 species 1 576610 327 Polynucleobacter duraquae 0 1835254 1 species 382 0 1 1827195 genus Burkholderia sp. RPE64 382 1 758793 species 0 87 0 1822464 12 genus 1 4847 Paraburkholderia 0 species 2026199 1 379 Paraburkholderia aromaticivorans Paraburkholderia caribensis 794 1 75105 species 0 0 species 36873 1 404 Paraburkholderia xenovorans Paraburkholderia terrae 396 311230 1 species 0 386 Paraburkholderia fungorum 0 species 1 134537 Paraburkholderia sprentiae 384 species 1 948107 0 480 Paraburkholderia phytofirmans 0 1 261302 species no rank 2615204 1 0 402 0 species 1 1926494 402 Paraburkholderia sp. SOS3 0 species 1 252970 324 Paraburkholderia phenoliruptrix species 1 148447 0 Paraburkholderia phymatum 362 Paraburkholderia hospita 449 species 169430 1 0 36 0 genus 48736 5 2525 1 Ralstonia 105219 1 species 0 Ralstonia mannitolilytica 389 1307 Ralstonia solanacearum 0 species 1 305 1 329 species 0 Ralstonia pickettii 511 1 190721 species 0 Ralstonia insidiosa 282 0 764 genus 41 32008 24601 1 Burkholderia species group 111527 7 0 7348 1045 Burkholderia thailandensis 0 species 1 57975 Burkholderia sp. MSMB617WGS 510 species 1637831 1 0 Burkholderia mallei 666 species 13373 1 0 Burkholderia sp. MSMB0266 469 species 1 1637837 0 559 Burkholderia oklahomensis 0 342113 1 species Burkholderia sp. MSMB0852 538 species 1637841 1 0 3561 Burkholderia pseudomallei 0 species 1 28450 Burkholderia plantarii 462 species 1 41899 0 745 Burkholderia gladioli 0 1 28095 species 11141 19 87882 species group 0 265293 1 species 0 [Pseudomonas] mesoacidophila 327 284 Burkholderia metallica 0 species 488729 1 0 species 60550 1 227 Burkholderia pyrrocinia species 1 1503054 0 Burkholderia stagnalis 332 0 1 1207504 species 292 Burkholderia pseudomultivorans 0 species 488732 1 276 Burkholderia diffusa 750 Burkholderia multivorans 0 87883 1 species Burkholderia cenocepacia 1470 1 95486 species 0 0 101571 1 species 1016 Burkholderia ubonensis 95485 1 species 0 Burkholderia stabilis 581 152480 1 species 0 Burkholderia ambifaria 478 152500 1 species 0 Burkholderia dolosa 312 0 species 1 488446 384 Burkholderia latens 1 1503055 species 0 Burkholderia territorii 248 636 Burkholderia vietnamiensis 0 species 60552 1 488447 1 species 0 Burkholderia contaminans 340 1055 Burkholderia lata 0 species 1 482957 488731 1 species 0 Burkholderia seminalis 276 0 species 292 1 1857 Burkholderia cepacia Burkholderia glumae 813 1 337 species 0 3328 0 2613784 11 no rank 0 species 1795043 1 176 Burkholderia sp. PAMC 26561 416344 1 species 0 Burkholderia sp. KJ006 298 0 1740163 1 species 267 Burkholderia sp. Bp7605 Burkholderia sp. RPE67 378 species 1 758796 0 375 Burkholderia sp. YI23 0 species 1097668 1 species 1678678 1 0 Burkholderia sp. HB1 345 178 Burkholderia sp. PAMC 28687 0 species 1795874 1 0 1 1740162 species 327 Burkholderia sp. Bp5365 329 Burkholderia sp. 2002721687 0 species 1 1468409 Burkholderia sp. CCGE1001 365 640510 1 species 0 0 640512 1 species 290 Burkholderia sp. CCGE1003 4628 1 Cupriavidus 0 84 genus 106589 9 630 Cupriavidus basilensis 0 species 68895 1 1299 0 2 2640874 no rank species 1389192 1 0 Cupriavidus sp. USMAHM13 580 0 species 1 876364 719 Cupriavidus sp. USMAA2-4 1 248026 species 0 Cupriavidus pinatubonensis 382 Cupriavidus gilardii 343 82541 1 species 0 Cupriavidus metallidurans 648 1 119219 species 0 Cupriavidus necator 608 106590 1 species 0 0 1 367825 species 634 Cupriavidus sp. USMAA1020 185 0 genus 1 2571159 species 1 412963 0 Paraburkholderia rhizoxinica 185 57 0 order 206389 22 3919 1 Rhodocyclales Azonexaceae 1 241 2008795 3 family 1 0 4 0 2 73029 genus 1 240 Dechloromonas 0 1 259537 species 236 Dechloromonas aromatica Rhodocyclaceae 1 670 6 75787 family 9 0 551759 2 genus 0 3 Aromatoleum 1 282 0 1 551760 species 279 Aromatoleum aromaticum Azospira 193 1 genus 146937 2 0 4 Azospira oryzae 189 1 146939 species 0 no rank 1 75788 0 186 186 Rhodocyclaceae bacterium 0 1898103 1 species 2951 1 Zoogloeaceae 0 41 family 12 2008794 33057 6 genus 45 0 Thauera 1 1572 1 96773 species 0 Thauera chlorobenzoica 256 0 2 2609274 no rank 731 320 Thauera sp. K11 0 species 1 2005884 0 species 1 85643 411 Thauera sp. MZ1T 0 59405 1 species 214 Thauera aromatica 326 Thauera humireducens 0 1 1134435 species 1 1338 Azoarcus 0 29 5 12960 genus Azoarcus olearius 309 species 418699 1 0 710 2629479 2 no rank 0 Azoarcus sp. KH32C 337 species 1 748247 0 Azoarcus sp. CIB 373 1 198107 species 0 Azoarcus sp. SY39 290 species 1 2067960 0 class 899 1236 0 644 Gammaproteobacteria 409914 1 8646 1 Cellvibrionales 0 28 order 30 1706369 Spongiibacteraceae 1 1895 1706375 7 family 39 0 Spongiibacter 581 1 genus 630749 2 0 9 572 0 1 2631504 no rank 572 Spongiibacter sp. IMCC21906 0 1 1620392 species Oceanicoccus 728 1 genus 1084558 2 3 0 0 species 716816 1 725 Oceanicoccus sagamiensis 1 547 Zhongshania 8 0 1434050 2 genus 539 Zhongshania aliphaticivorans 0 1 1470434 species Microbulbiferaceae 1447 1 family 5 1706373 5 0 0 40 genus 4 48073 1442 1 Microbulbifer 447 Microbulbifer agarilyticus 0 260552 1 species Microbulbifer thermotolerans 482 species 1 252514 0 1 1769779 species 0 Microbulbifer aggregans 473 family 1706372 4 3 0 Halieaceae 1779 1 Halioglobus 1776 1 genus 1217416 3 0 22 species 930805 1 0 Halioglobus japonicus 734 species 930806 1 0 Halioglobus pacificus 1020 family 1706371 13 0 37 Cellvibrionaceae 3497 1 genus 10 4 0 6 Cellvibrio 1196 1 0 2 2624793 no rank 852 456 Cellvibrio sp. PSBB006 0 species 1 1987723 0 species 1 1945512 396 Cellvibrio sp. PSBB023 0 155077 1 species 338 Cellvibrio japonicus Agarilytica 820 1 genus 2036021 2 5 0 815 Agarilytica rhodophyticola 0 species 1 1737490 Saccharophagus 1 561 2 316625 genus 5 0 species 86304 1 0 Saccharophagus degradans 556 Teredinibacter 549 1 genus 2425 2 0 3 1 2426 species 0 Teredinibacter turnerae 546 334 1 Simiduia 0 2 genus 447467 2 1 447471 species 0 Simiduia agarivorans 332 0 5 order 1692040 6 762 1 Acidiferrobacterales family 1692041 5 0 14 Acidiferrobacteraceae 757 1 genus 2 1692042 0 2 Sulfurifustis 439 1 species 1 1675686 0 Sulfurifustis variabilis 437 Sulfuricaulis 1 304 1744881 2 genus 0 4 0 species 1620215 1 300 Sulfuricaulis limicola 1 24611 Thiotrichales 0 19 72273 36 order family 15 135616 47 0 Piscirickettsiaceae 6888 1 genus 4 34067 39 0 Cycloclasticus 3820 1 0 2 2621467 no rank 2866 1442 Cycloclasticus sp. PY97N 0 species 728003 1 1 385025 species 0 Cycloclasticus sp. P1 1424 0 1329899 1 species 915 Cycloclasticus zancles Thiomicrospira 1 638 933 3 genus 14 0 species 147268 1 0 Thiomicrospira cyclica 277 species 92245 1 0 Thiomicrospira aerophila 347 genus 2 1237 7 0 Piscirickettsia 868 1 861 Piscirickettsia salmonis 0 species 1 1238 genus 28884 2 1 0 Hydrogenovibrio 394 1 393 Hydrogenovibrio crunogenus 0 species 39765 1 Methylophaga 1121 1 genus 3 40222 23 0 0 1 754477 species 518 Methylophaga frappieri Methylophaga nitratireducenticrescens 580 754476 1 species 0 family 34064 15 21 0 Francisellaceae 16158 1 0 1 genus 2 1869285 976 1 Allofrancisella Allofrancisella guangzhouensis 975 594679 1 species 0 0 175 genus 12 262 15161 1 Francisella species 1 263 0 Francisella tularensis 2610 1090 Francisella sp. TX077310 0 573570 1 species species 549298 1 0 Francisella halioticida 1858 1886 0 no rank 2610885 2 Francisella sp. MA067296 856 species 1 475375 0 1 1547445 species 0 Francisella sp. FSC1006 1030 1174 Francisella sp. CA97-1460 0 species 1 1542390 948 Francisella hispaniensis 0 1 622488 species 0 954 1 species 789 Francisella persica Francisella philomiragia 2256 28110 1 species 0 0 species 1 657445 1486 Francisella noatunensis 0 1 573569 species 889 Francisella sp. TX077308 5 135617 family 16 0 Thiotrichaceae 1 1546 1 666 Thioploca 0 1 2 40751 genus 665 Thioploca ingrica 0 species 1 40754 1 864 Beggiatoa 7 0 1021 2 genus Beggiatoa leptomitoformis 857 species 1 288004 0 636 0 2 33811 no rank 1248727 1 species 0 endosymbiont of unidentified scaly snail isolate Monju 282 gamma proteobacterium HdN1 354 83406 1 species 0 435 1 Immundisolibacterales 0 5 order 1934945 4 1934946 3 family 8 0 Immundisolibacteraceae 1 430 1 422 Immundisolibacter 6 0 2 1934947 genus 0 species 1810504 1 416 Immundisolibacter cernigliae Chromatiales 9989 1 order 135613 49 0 95 family 72276 16 53 0 Ectothiorhodospiraceae 3062 1 0 1 1765964 genus 298 0 160660 1 species 298 Acidihalobacter prosperus 1 1051 genus 0 277 277 2684909 1 no rank 0 species 1442136 1 0 Ectothiorhodospira sp. BSL-9 277 0 47 genus 6 106633 1472 1 Thioalkalivibrio 0 1 186931 species 242 Thioalkalivibrio nitratireducens 204 Thioalkalivibrio versutus 0 species 106634 1 Thioalkalivibrio paradoxus 299 species 108010 1 0 394 Thioalkalivibrio sulfidiphilus 0 species 1033854 1 286 0 2621013 1 no rank 0 1 396595 species 286 Thioalkalivibrio sp. K90mix Alkalilimnicola 307 1 genus 2 133193 0 3 0 351052 1 species 304 Alkalilimnicola ehrlichii Halorhodospira 1 235 2 85108 genus 0 2 233 Halorhodospira halophila 0 species 1053 1 420 1 Spiribacter 0 4 genus 1335745 3 1 1335757 species 0 Spiribacter curvatus 243 Spiribacter salinus 173 1 1335746 species 0 425 1738654 2 family 0 Woeseia 425 1 genus 1738655 2 14 0 0 species 1 1548547 411 Woeseia oceani Wenzhouxiangellaceae 440 1 family 1676141 3 0 4 1 436 Wenzhouxiangella 0 14 1676142 2 genus 0 1579979 1 species 422 Wenzhouxiangella marina 346 0 no rank 2 451214 1 346 Thiohalobacter 0 4 2 1273155 genus 1 585455 species 0 Thiohalobacter thiocyanaticus 342 Chromatiaceae 4598 1 family 1046 18 38 0 Nitrosococcus 1147 1 genus 4 1227 23 0 0 1 1229 species 303 Nitrosococcus oceani 574 Nitrosococcus watsonii 0 species 1 473531 0 species 133539 1 247 Nitrosococcus halophilus 5 0 1980513 2 genus 1 532 Candidatus Nitrosoglobus 1 1630141 species 0 Candidatus Nitrosoglobus terrae 527 1 1168 Thiodictyon 0 17 53392 2 genus 1 1166950 species 0 Candidatus Thiodictyon syntrophicum 1151 genus 2 13724 2 0 Thiocystis 316 1 314 Thiocystis violascens 0 species 1 73141 1 379 Thioflavicoccus 10 0 156885 2 genus 1 80679 species 0 Thioflavicoccus mobilis 369 1 82569 no rank 0 325 Chromatiaceae bacterium 2141T.STBD.0c.01a 325 species 1 1978339 0 Allochromatium 279 1 genus 2 85072 0 5 Allochromatium vinosum 274 species 1 1049 0 Marichromatium 1 414 85076 2 genus 0 3 411 Marichromatium purpuratum 0 37487 1 species family 3 449719 9 0 Granulosicoccaceae 594 1 1 585 Granulosicoccus 0 6 437504 2 genus 579 Granulosicoccus antarcticus 0 species 1 437505 Halothiobacillaceae 1 429 4 255526 family 0 1 1 428 Halothiobacillus 0 8 109262 3 genus 195 Halothiobacillus neapolitanus 0 species 927 1 1 2636392 no rank 0 225 0 species 1860122 1 225 Halothiobacillus sp. LS2 order 129 72274 0 177 Pseudomonadales 56446 1 family 135621 86 192 0 Pseudomonadaceae 34023 1 944 3 351 subfamily 0 0 6 3 352 genus 1 944 Azotobacter 0 species 354 1 363 Azotobacter vinelandii 1 353 species 0 Azotobacter chroococcum 575 0 3 genus 2 1849530 382 1 Oblitimonas 0 species 1697053 1 379 Oblitimonas alkaliphila 1 32505 Pseudomonas 884 0 286 80 genus 1 104087 species 0 Pseudomonas frederiksbergensis 569 1 1853130 species 0 Pseudomonas silesiensis 403 0 species group 136846 2 2068 1800 0 species subgroup 1 578833 0 species 1 316 1800 Pseudomonas stutzeri species 74829 1 0 Pseudomonas balearica 268 208 Pseudomonas cremoricolorata 0 157783 1 species 174 Pseudomonas rhizosphaerae 0 216142 1 species 244566 1 species 0 Pseudomonas lurida 138 Pseudomonas alkylphenolica 202 237609 1 species 0 0 species group 6 136845 4606 303 1 species 0 Pseudomonas putida 2648 0 76759 1 species 598 Pseudomonas monteilii 269 Pseudomonas oryzihabitans 0 47885 1 species 1 70775 species 0 Pseudomonas plecoglossicida 182 0 species 47880 1 370 Pseudomonas fulva 0 1 78327 species 539 Pseudomonas mosselii 0 species 1 157782 362 Pseudomonas parafulva 8 136849 species group 0 3023 588 2 251698 species subgroup 0 0 1 29438 species 329 Pseudomonas savastanoi 259 Pseudomonas amygdali 0 47877 1 species 358 Pseudomonas syringae group genomosp. 3 0 species 1 251701 0 46257 1 species 144 Pseudomonas avellanae 0 1 33069 species 173 Pseudomonas viridiflava 0 species subgroup 1 251695 1425 Pseudomonas syringae 1425 1 317 species 0 183 0 no rank 1 2775504 Pseudomonas sp. Lz4W 183 species 1206777 1 0 0 species 1 36746 152 Pseudomonas cichorii 0 1 198620 species 360 Pseudomonas koreensis 4842 0 136843 9 species group species 1 200450 0 Pseudomonas trivialis 330 142 Pseudomonas orientalis 0 species 76758 1 0 species 75612 1 162 Pseudomonas mandelii 0 1 47879 species 161 Pseudomonas corrugata 76761 1 species 0 Pseudomonas veronii 162 Pseudomonas azotoformans 524 1 47878 species 0 Pseudomonas poae 205 1 200451 species 0 294 1 species 0 Pseudomonas fluorescens 2856 300 Pseudomonas protegens 0 1 380021 species 0 species 1 930166 357 Pseudomonas brassicacearum 0 237610 1 species 289 Pseudomonas psychrotolerans 251 Pseudomonas alcaliphila 0 1 101564 species species group 2 136842 0 1586 Pseudomonas chlororaphis 1238 1 587753 species 0 296 1 species 0 Pseudomonas fragi 348 Pseudomonas cerasi 224 1583341 1 species 0 196821 30 no rank 0 6588 207 Pseudomonas sp. MRSN12121 0 1611770 1 species 0 species 1 1500687 185 Pseudomonas sp. St29 411 Pseudomonas sp. CC6-YY-74 0 species 1930532 1 0 species 1 1534110 171 Pseudomonas sp. DR 5-09 133 Pseudomonas sp. MYb193 0 species 1 1827300 1415630 1 species 0 Pseudomonas sp. TKP 329 Pseudomonas sp. SWI6 215 2083051 1 species 0 Pseudomonas sp. HLS-6 172 species 2049589 1 0 Pseudomonas sp. GR 6-02 192 species 1 1659194 0 Pseudomonas sp. JY-Q 172 1 1338689 species 0 Pseudomonas sp. NC02 236 species 2067572 1 0 2083054 1 species 0 Pseudomonas sp. LG1D9 219 242 Pseudomonas sp. XWY-1 0 species 1 2069256 0 species 1 1931241 247 Pseudomonas sp. S-6-2 1500686 1 species 0 Pseudomonas sp. Os17 192 279 Pseudomonas sp. LPH1 0 species 1898684 1 174 Pseudomonas sp. FDAARGOS_380 0 species 1 2018067 0 species 1636610 1 186 Pseudomonas sp. PONIH3 0 species 1 2083053 207 Pseudomonas sp. SWI44 0 species 1981174 1 236 Pseudomonas sp. M30-35 0 species 1 1028989 183 Pseudomonas sp. StFLB209 269 Pseudomonas sp. ATCC 13867 0 species 1294143 1 0 species 1283291 1 384 Pseudomonas sp. URMO17WK12:I11 0 species 1649877 1 186 Pseudomonas sp. CCOS 191 162 Pseudomonas sp. LH1G9 0 1 2083055 species Pseudomonas sp. UW4 181 species 1 1207075 0 0 1 1259844 species 163 Pseudomonas sp. FGI182 248 Pseudomonas sp. TCU-HL1 0 1856685 1 species 182 Pseudomonas sp. VLB120 0 1 69328 species 225 Pseudomonas sp. SWI36 0 species 2083052 1 187 Pseudomonas versuta 0 1 1788301 species 0 219572 1 species 147 Pseudomonas antarctica 266 Pseudomonas knackmussii 0 species 1 65741 Pseudomonas entomophila 207 1 312306 species 0 6 136841 species group 0 4564 289 Pseudomonas resinovorans 0 1 53412 species Pseudomonas alcaligenes 271 1 43263 species 0 species subgroup 1 1232139 0 456 Pseudomonas furukawaii 456 species 1 1149133 0 1983 Pseudomonas aeruginosa 0 species 287 1 0 1 300 species 1065 Pseudomonas mendocina 0 53408 1 species 500 Pseudomonas citronellolis 0 65 468 42 family 1 22246 Moraxellaceae 65 0 11 497 genus 1 3649 Psychrobacter no rank 6 196806 0 2103 377 Psychrobacter sp. P2G3 0 1699622 1 species species 349106 1 0 Psychrobacter sp. PRwf-1 410 0 species 1028416 1 329 Psychrobacter sp. DAB_AL43B 0 species 1 1699624 361 Psychrobacter sp. P11G5 species 1 571800 0 Psychrobacter sp. G 333 293 Psychrobacter sp. AntiMn-1 0 species 1720344 1 0 334543 1 species 303 Psychrobacter arcticus 443 Psychrobacter alimentarius 0 1 261164 species 45610 1 species 0 Psychrobacter urativorans 393 342 Psychrobacter cryohalolentis 0 330922 1 species Moraxella 1 1853 5 475 genus 9 0 0 34062 1 species 770 Moraxella osloensis 0 1 480 species 524 Moraxella catarrhalis Moraxella bovoculi 343 1 386891 species 0 Moraxella ovis 207 species 1 29433 0 genus 25 469 171 0 Acinetobacter 16679 1 108981 1 species 0 Acinetobacter schindleri 371 Acinetobacter bereziniae 730 1 106648 species 0 0 1 40214 species 370 Acinetobacter johnsonii Acinetobacter haemolyticus 679 1 29430 species 0 0 5 909768 species group 7212 0 species 106654 1 779 Acinetobacter nosocomialis 575 Acinetobacter lactucae 0 species 1785128 1 1065 Acinetobacter calcoaceticus 0 species 471 1 0 species 1 470 2458 Acinetobacter baumannii 0 48296 1 species 2335 Acinetobacter pittii 1148157 1 species 0 Acinetobacter oleivorans 624 931 Acinetobacter equi 0 1 1324350 species Acinetobacter junii 712 1 40215 species 0 Acinetobacter indicus 240 1 756892 species 0 0 species 1 202950 509 62977 1 strain 0 Acinetobacter sp. ADP1 509 433 Acinetobacter larvae 0 species 1789224 1 40216 1 species 0 Acinetobacter radioresistens 345 0 species 487316 1 413 Acinetobacter soli no rank 7 196816 0 2939 Acinetobacter sp. NCu2D-2 399 1 1608473 species 0 1 1646498 species 0 Acinetobacter sp. TTH0-4 487 0 1407071 1 species 443 Acinetobacter sp. TGL-Y2 0 species 1636603 1 430 Acinetobacter sp. ACNIH1 0 1 2079596 species 416 Acinetobacter sp. SWBY1 0 species 1 1758189 424 Acinetobacter sp. ACNIH2 species 1808001 1 0 Acinetobacter sp. LoGeW2-3 340 20 0 43 135623 order 1 109653 Vibrionales 106 0 family 42 641 109633 1 Vibrionaceae genus 1 246861 0 269 0 673 1 species 269 Grimontia hollisae 662 30 genus 591 0 Vibrio 1 100965 329 Vibrio fluvialis 0 1 676 species 83750 0 species group 717610 10 0 2 2315253 species subgroup 2367 0 species 150340 1 865 Vibrio antiquarius 1502 Vibrio diabolicus 0 1 50719 species 9449 Vibrio alginolyticus 0 species 663 1 species 1 670 0 Vibrio parahaemolyticus 2147 Vibrio campbellii 22310 680 1 species 0 696485 1 species 0 Vibrio owensii 4902 species 1 766224 0 Vibrio jasicida 1737 Vibrio rotiferianus 1646 1 190895 species 0 0 species 691 1 686 Vibrio natriegens 1 669 species 0 Vibrio harveyi 38506 0 species 190893 1 7074 Vibrio coralliilyticus species 1 687 0 Vibrio gazogenes 425 339 Vibrio breoganii 0 species 1 553239 305 Vibrio qinghaiensis 0 species 1 2025808 0 29494 1 species 462 Vibrio furnissii 674 1 species 0 Vibrio mimicus 386 0 1 666 species 563 Vibrio cholerae 0 1435069 1 species 415 Vibrio tritonius 45658 1 species 0 Vibrio scophthalmi 560 323 Vibrio nigripulchritudo 0 species 1 28173 Vibrio hyugaensis 1159 species 1 1534743 0 563 2 2614977 no rank 0 Vibrio sp. 2521-89 191 species 2014742 1 0 0 species 1116375 1 372 Vibrio sp. EJY3 1 672 species 0 Vibrio vulnificus 1320 Vibrio anguillarum 811 1 55601 species 0 495 Vibrio tasmaniensis 0 species 1 212663 1 1891919 species group 0 594 Vibrio tubiashii 594 species 1 29498 0 52443 1 species 0 Vibrio tapetis 501 0 10 genus 657 4 4198 1 Photobacterium Photobacterium gaetbulicola 275 species 1 1295392 0 640 Photobacterium profundum 0 species 1 74109 3273 Photobacterium damselae 0 1 38293 species 511678 4 genus 0 15 Aliivibrio 1 2044 668 1 species 0 Aliivibrio fischeri 655 0 species 1 40269 587 Aliivibrio salmonicida 0 species 80852 1 787 Aliivibrio wodanis 2051 1 Paraphotobacterium 0 3 genus 2042066 2 2048 Paraphotobacterium marinum 0 species 1755811 1 1 75754 Enterobacterales 202 0 91347 248 order Yersiniaceae 10416 1 family 1903411 39 30 0 genus 4 34037 0 9 Rahnella 553 1 395 2 2635087 no rank 0 species 1 1805933 0 Rouxiella sp. ERMR1:05 224 species 741091 1 0 Rahnella sp. Y9602 171 0 1 34038 species 149 Rahnella aquatilis 1745211 2 genus 5 0 Chania 1 174 0 1639108 1 species 169 Chania multitudinisentens Serratia 4550 1 genus 613 16 0 148 350 Serratia plymuthica 0 species 82996 1 species 1 28151 0 Serratia proteamaculans 144 1330 Serratia marcescens 0 1 615 species 0 species 1 61652 215 Serratia rubidaea 1468 2647522 8 no rank 0 1758196 1 species 0 Serratia sp. SSNIH1 136 Serratia sp. MYb239 191 species 2033438 1 0 species 1 671990 0 Serratia sp. FGI94 164 124 Serratia sp. AS12 0 1 768490 species 488142 1 species 0 Serratia sp. SCBI 276 Serratia sp. ATCC 39006 235 104623 1 species 0 0 species 1327989 1 218 Serratia sp. FS14 Serratia sp. AS13 124 1 768493 species 0 242 Serratia liquefaciens 0 species 1 614 Serratia fonticola 466 species 47917 1 0 Serratia ficaria 187 1 61651 species 0 1 190 Gibbsiella 0 1 2 929812 genus 189 Gibbsiella quercinecans 0 species 1 929813 Rouxiella 1 1 1565532 genus 0 4918 1 Yersinia 0 95 genus 629 13 1 29486 species 0 Yersinia ruckeri 284 231 Yersinia kristensenii 0 1 28152 species 0 no rank 1 2653513 225 0 1839800 1 species 225 Yersinia sp. FDAARGOS_228 Yersinia aleksiciae 188 1 263819 species 0 3 1649845 species group 0 1571 Yersinia pestis 468 species 1 632 0 species 367190 1 0 Yersinia similis 482 633 1 species 0 Yersinia pseudotuberculosis 621 Yersinia intermedia 251 species 1 631 0 298 Yersinia rohdei 0 1 29485 species Yersinia frederiksenii 641 species 29484 1 0 Yersinia aldovae 215 29483 1 species 0 0 630 1 species 919 Yersinia enterocolitica 9 0 family 1903410 20 3856 1 Pectobacteriaceae genus 204037 6 53 0 Dickeya 1152 1 0 1 1089444 species 303 Dickeya solani 1 204042 species 0 Dickeya zeae 338 0 species 1 1778540 150 Dickeya fangzhongdai species 1 204039 0 Dickeya dianthicola 140 0 1 204038 species 168 Dickeya dadantii 5 84565 genus 0 33 Sodalis 1 983 0 1486991 1 species 233 Candidatus Sodalis pierantonius 0 species 1 1239307 204 Sodalis praecaptivus 177 Sodalis glossinidius 0 1 63612 species species 1929246 1 0 Sodalis endosymbiont of Henestaris halophilus 336 0 42 122277 6 genus 1 1495 Pectobacterium 357 Pectobacterium parmentieri 0 species 1905730 1 534 Pectobacterium carotovorum 0 species 554 1 182 Pectobacterium atrosepticum 0 species 1 29471 Pectobacterium polaris 175 1 2042057 species 0 species 1 55208 0 Pectobacterium wasabiae 205 2 71655 genus 0 3 Brenneria 1 217 0 1109412 1 species 214 Brenneria goodwinii Erwiniaceae 1 15718 28 1903409 family 38 0 379 0 2100764 2 genus species 1 665913 0 Pantoea calida 203 0 1 665914 species 176 Pantoea gaviniae genus 2 82986 4 0 Tatumella 166 1 Tatumella citrea 162 species 1 53336 0 Wigglesworthia 1 1857 2 51228 genus 23 0 1834 Wigglesworthia glossinidia 0 1 51229 species Pantoea 2593 1 genus 53335 11 77 0 species group 1 1654067 0 292 species 1 549 0 Pantoea agglomerans 292 148 Pantoea rwandensis 0 1 1076550 species species 553 1 0 Pantoea ananatis 224 2630326 3 no rank 0 551 0 species 1484157 1 207 Pantoea sp. PSNIH2 1 592316 species 0 Pantoea sp. At-9b 185 species 1 1484158 0 Pantoea sp. PSNIH1 159 160 Pantoea alhagi 0 species 1 1891675 364 Pantoea vagans 0 1 470934 species 0 species 1 1235990 619 Candidatus Pantoea carbekii 0 species 1 66269 158 Pantoea stewartii Erwinia 1348 1 genus 8 551 0 23 species 1619313 1 0 Erwinia gerundensis 185 148 Erwinia tasmaniensis 0 species 338565 1 no rank 2622719 1 0 126 126 Erwinia sp. Ejp617 0 215689 1 species 1922217 1 species 0 Candidatus Erwinia sp. ErCipseudotaxifoliae 313 182337 1 species 0 Erwinia billingiae 234 0 552 1 species 160 Erwinia amylovora species 79967 1 0 Erwinia pyrifoliae 159 32199 2 genus 0 20 Buchnera 1 9337 1 9 species 0 Buchnera aphidicola 9317 0 22 1903412 14 family 1 5888 Hafniaceae Hafnia 588 1 genus 568 3 11 0 2621980 1 no rank 0 132 species 1848580 1 0 Hafnia sp. CBA7124 132 Hafnia alvei 445 species 569 1 0 1 181 Obesumbacterium 4 0 82982 2 genus Obesumbacterium proteus 177 1 82983 species 0 0 50 635 8 genus 1 5097 Edwardsiella 169 Edwardsiella ictaluri 0 species 1 67780 Edwardsiella hoshinae 155 1 93378 species 0 0 species 1821960 1 234 Edwardsiella anguillarum 0 1263550 1 species 187 Edwardsiella piscicida 3934 Edwardsiella tarda 0 species 636 1 2676541 2 no rank 0 368 Edwardsiella sp. LADL05-105 179 species 1 1650654 0 Edwardsiella sp. EA181011 189 species 1578828 1 0 7017 1 Morganellaceae 0 22 family 22 1903414 genus 6 626 11 0 Xenorhabdus 1613 1 Xenorhabdus hominickii 347 species 1 351679 0 Xenorhabdus poinarii 279 species 1 40577 0 0 1 40576 species 473 Xenorhabdus bovienii 242 Xenorhabdus nematophila 0 1 628 species 1 351671 species 0 Xenorhabdus doucetiae 261 3 0 genus 2 637 857 1 Arsenophonus Arsenophonus symbiont of Lipoptena fortisetosa 854 1 634113 species 0 genus 2 581 5 0 Morganella 320 1 0 species 1 582 315 Morganella morganii Photorhabdus 1 1113 29487 4 genus 14 0 Photorhabdus temperata 332 species 1 574560 0 397 Photorhabdus luminescens 0 species 29488 1 0 291112 1 species 370 Photorhabdus asymbiotica 3 583 genus 6 0 Proteus 1 1701 594 Proteus vulgaris 0 585 1 species 1101 Proteus mirabilis 0 584 1 species 5 0 586 4 genus 1 1391 Providencia 1 126385 species 0 Providencia alcalifaciens 297 Providencia stuartii 569 1 588 species 0 587 1 species 0 Providencia rettgeri 520 Budviciaceae 1 290 2 1903416 family 0 1 0 genus 1 82984 289 0 species 82985 1 289 Pragia fontium 32100 1 Enterobacteriaceae 0 228 family 120 543 2 158483 genus 1 0 Cedecea 1 469 Cedecea neteri 468 1 158822 species 0 0 5 36866 no rank 1002 species 1 2066051 0 Enterobacteriaceae bacterium ENNIH1 157 502 Plautia stali symbiont 0 1 891974 species Enterobacteriaceae bacterium ENNIH3 133 species 1920128 1 0 1920109 1 species 0 Enterobacteriaceae bacterium ENNIH2 107 1 693444 species 0 Enterobacteriaceae bacterium strain FGI 57 103 0 9 genus 5 1330547 669 1 Kosakonia species 497725 1 0 Kosakonia oryzae 148 161 Kosakonia sacchari 0 1 1158459 species 125 Kosakonia cowanii 0 species 1 208223 species 283686 1 0 Kosakonia radicincitans 226 5 0 2 409304 genus 1 727 Candidatus Ishikawaella Candidatus Ishikawaella capsulata 722 species 1 168169 0 1 488 Candidatus Riesia 2 0 401618 2 genus 0 401619 1 species 486 Candidatus Riesia pediculicola 1 4776 Klebsiella 81 0 10 570 genus Klebsiella quasivariicola 162 2026240 1 species 0 Klebsiella quasipneumoniae 202 1463165 1 species 0 0 1 548 species 662 Klebsiella aerogenes 0 species 1 244366 334 Klebsiella variicola 1 573 species 0 Klebsiella pneumoniae 1864 Klebsiella michiganensis 410 1134687 1 species 0 2 2608929 no rank 0 328 0 1934254 1 species 152 Klebsiella sp. M5al 1905288 1 species 0 Klebsiella sp. LTGPAF-6F 176 1 571 species 0 Klebsiella oxytoca 733 8 0 genus 1330546 3 452 1 Pluralibacter 176 [Enterobacter] lignolyticus 0 species 1 1334193 Pluralibacter gergoviae 268 1 61647 species 0 1330545 4 genus 0 7 Lelliottia 1 485 0 1 69220 species 108 Lelliottia nimipressuralis 0 species 61646 1 259 Lelliottia amnigena 0 1907578 1 species 111 Lelliottia jeotgali 143 genus 1 579 0 143 Kluyvera intermedia 0 61648 1 species genus 1335483 1 0 123 123 Shimwellia blattae 0 563 1 species Leclercia 412 1 genus 83654 4 0 8 139 Leclercia adecarboxylata 0 species 1 83655 0 no rank 2627398 2 265 151 Leclercia sp. LSNIH3 0 1 1920116 species 114 Leclercia sp. LSNIH1 0 species 1 1920114 genus 413496 8 38 0 Cronobacter 1047 1 1 413501 species 0 Cronobacter muytjensii 135 Cronobacter universalis 133 species 535744 1 0 0 413497 1 species 115 Cronobacter dublinensis 1 413502 species 0 Cronobacter turicensis 131 0 species 28141 1 243 Cronobacter sakazakii 1 1163710 species 0 Cronobacter condimenti 128 124 Cronobacter malonaticus 0 species 1 413503 genus 590 3 0 5 Salmonella 3446 1 54736 1 species 0 Salmonella bongori 236 0 1 28901 species 3205 Salmonella enterica Shigella 1 225 4 620 genus 9 0 2629414 1 no rank 0 65 65 Shigella sp. PAMC 28760 0 species 1 1813821 0 623 1 species 49 Shigella flexneri 102 Shigella dysenteriae 0 1 622 species 1 3725 Enterobacter 0 177 547 22 genus 0 species group 12 354276 2685 Enterobacter ludwigii 109 species 299767 1 0 species 69218 1 0 Enterobacter cancerogenus 101 1 1812935 species 0 Enterobacter cloacae complex 'Hoffmann cluster IV' 74 species 1 61645 0 Enterobacter asburiae 301 259 0 2757714 3 no rank 112 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 species 1 2077137 Enterobacter cloacae complex bacterium 62 2027919 1 species 0 0 1 1915310 species 85 Enterobacter cloacae complex sp. ECNIH7 Enterobacter hormaechei 1 592 158836 3 species 419 0 Enterobacter cloacae complex 'Hoffmann cluster III' 101 1 1812934 subspecies 0 0 subspecies 1296536 1 72 Enterobacter xiangfangensis Enterobacter kobei 86 1 208224 species 0 550 1 species 0 Enterobacter cloacae 1163 863 2608935 9 no rank 0 112 Enterobacter sp. 638 0 399742 1 species 74 Enterobacter sp. Crenshaw 0 1 1977566 species species 2051905 1 0 Enterobacter sp. CRENT-193 82 77 Enterobacter sp. HK169 0 species 1 1868135 0 1166130 1 species 144 Enterobacter sp. R4-368 species 1914861 1 0 Enterobacter sp. SA187 130 1 1827481 species 0 Enterobacter sp. ODB01 74 Enterobacter sp. FY-07 93 1 1692238 species 0 77 Enterobacter sp. E20 0 species 1 1560339 3 160674 genus 4 0 Raoultella 1 621 1 54291 species 0 Raoultella ornithinolytica 462 species 575 1 0 Raoultella planticola 155 124 1 1048757 genus 0 species 1 1048758 0 Candidatus Moranella endobia 124 6411 20 191675 no rank 0 6411 20 84563 clade 0 0 1 1906660 2 genus 1 430 Candidatus Mikella Candidatus Mikella endobia 429 species 1778264 1 0 0 clade 1 199891 335 0 1835721 1 species 335 secondary endosymbiont of Trabutina mannipara 185 1 Candidatus Hoaglandella 1 0 genus 1906659 2 184 Candidatus Hoaglandella endobia 0 species 1 1778263 818 0 146507 4 clade 0 species 1199245 1 153 secondary endosymbiont of Ctenarytaina eucalypti 2 568987 genus 0 5 Candidatus Hamiltonella 1 362 Candidatus Hamiltonella defensa 357 species 1 138072 0 0 species 1 134287 303 secondary endosymbiont of Heteropsylla cubana 0 1 1906661 genus 351 1 1070130 species 0 Candidatus Gullanella endobia 351 4 0 1682492 2 genus 1 917 Candidatus Tachikawaea 913 Candidatus Tachikawaea gelatinosa 0 1410383 1 species 0 1 1906657 genus 120 0 species 1 1778262 120 Candidatus Doolittlea endobia clade 7 84564 0 3255 genus 203804 7 31 0 Candidatus Blochmannia 3255 1 0 species 1 203907 599 Candidatus Blochmannia floridanus 0 species 251535 1 631 Candidatus Blochmannia vafer 468 Candidatus Blochmannia pennsylvanicus 0 species 1 101534 0 species 1 251542 500 Candidatus Blochmannia chromaiodes 1026 711328 2 no rank 0 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 540 1 1505597 species 0 0 species 1505596 1 486 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 2752 1 Citrobacter 80 0 genus 544 14 325 Citrobacter farmeri 0 1 67824 species 247 no rank 2 2644389 0 species 1920110 1 0 Citrobacter sp. CFNIH10 156 1702170 1 species 0 Citrobacter sp. FDAARGOS_156 91 0 35703 1 species 325 Citrobacter amalonaticus 1512 7 1344959 species group 0 species 2077149 1 0 Citrobacter freundii complex sp. CFNIH9 114 species 1 2077147 0 Citrobacter freundii complex sp. CFNIH3 92 122 Citrobacter freundii complex sp. CFNIH4 0 2077148 1 species species 57706 1 0 Citrobacter braakii 213 Citrobacter werkmanii 195 species 1 67827 0 1 2066049 species 0 Citrobacter freundii complex sp. CFNIH2 122 0 species 1 546 654 Citrobacter freundii 142 Citrobacter koseri 0 species 1 545 0 1 67825 species 121 Citrobacter rodentium genus 561 5 17 0 Escherichia 3775 1 276 Escherichia albertii 0 208962 1 species Escherichia marmotae 116 1 1499973 species 0 0 1 564 species 98 Escherichia fergusonii 3268 Escherichia coli 0 1 562 species 2 451511 no rank 0 267 Plesiomonas 267 1 genus 702 2 0 5 0 species 1 703 262 Plesiomonas shigelloides 5 1240482 order 0 1761 1 1761 Orbaceae 0 7 5 1240483 family genus 1335631 2 0 15 Frischella 763 1 Frischella perrara 748 species 1 1267021 0 991 1 Gilliamella 0 8 genus 1193503 2 Gilliamella apicola 983 1196095 1 species 0 6990 0 no rank 118884 14 2298 1 Candidatus Thioglobus 0 32 genus 3 655184 1538 Candidatus Thioglobus singularis 0 1 1427364 species 0 1 1705394 species 728 Candidatus Thioglobus autotrophicus 1214 0 1 198346 clade Candidatus Baumannia cicadellinicola 1214 species 186490 1 0 2319 0 32036 4 clade 113267 1 species 0 Bathymodiolus septemdierum thioautotrophic gill symbiont 561 Candidatus Ruthia 758 1 genus 1541743 2 0 14 species 1 386487 0 Candidatus Ruthia magnifica 744 Calyptogena okutanii thioautotrophic gill symbiont 1000 species 410330 1 0 1 280 Thiolapillus 0 2 1608298 2 genus 0 1 1076588 species 278 Thiolapillus brandeum genus 1524249 2 2 0 Pseudohongiella 452 1 Pseudohongiella spirulinae 450 1249552 1 species 0 genus 2 349742 0 6 Sedimenticola 427 1 Sedimenticola thiotaurini 421 species 1 1543721 0 Legionellales 1 12623 118969 21 order 22 0 1639 1 Coxiellaceae 0 17 family 118968 5 571 no rank 1 134284 0 0 1592897 1 species 571 Coxiella-like endosymbiont 776 3 genus 15 0 Coxiella 1 1051 524 0 no rank 1 2676648 species 1 325775 0 Coxiella endosymbiont of Amblyomma americanum 524 Coxiella burnetii 512 1 777 species 0 15 444 family 21 0 Legionellaceae 1 10962 5 0 465 2 genus 1 593 Tatlockia 1 451 species 0 Tatlockia micdadei 588 Legionella 1 10348 445 12 genus 96 0 1151 Legionella endosymbiont of Polyplax serrata 0 species 2005262 1 601 Legionella lansingensis 0 species 45067 1 0 species 66969 1 719 Legionella waltersii Legionella clemsonensis 755 species 1 1867846 0 Legionella hackeliae 678 species 1 449 0 species 446 1 0 Legionella pneumophila 2696 897 Legionella fallonii 0 species 96230 1 Legionella spiritensis 350 species 1 452 0 1 29423 species 0 Legionella oakridgensis 538 Legionella sainthelensi 987 1 28087 species 0 0 1 450 species 880 Legionella longbeachae 135619 72 order 0 87 Oceanospirillales 1 18102 974 1 Saccharospirillaceae 0 5 family 255527 5 16 0 genus 1445504 2 537 1 Gynuella Gynuella sunshinyii 521 1 1445505 species 0 432 1 Reinekea 0 4 genus 2 230494 Reinekea forsetii 428 1336806 1 species 0 family 3 191033 8 0 Oleiphilaceae 527 1 0 2 141450 2 genus 1 519 Oleiphilus Oleiphilus messinensis 517 1 141451 species 0 Kangiellaceae 1 1587 6 1920240 family 7 0 1 1580 Kangiella 0 32 5 261963 genus Kangiella sediminilitoris 446 1144748 1 species 0 0 1561924 1 species 381 Kangiella profundi Kangiella geojedonensis 359 species 1 914150 0 species 261964 1 0 Kangiella koreensis 362 0 17 family 13 135620 3992 1 Oceanospirillaceae genus 188907 2 0 5 Oleispira 523 1 0 1 188908 species 518 Oleispira antarctica 48075 2 genus 0 1 Marinobacterium 1 508 species 1821621 1 0 Marinobacterium aestuarii 507 Thalassolituus 1 643 2 187492 genus 3 0 1 187493 species 0 Thalassolituus oleivorans 640 1864 1 Marinomonas 0 13 genus 28253 4 575 Marinomonas mediterranea 0 species 1 119864 936476 1 species 0 Marinomonas posidonica 509 767 0 1 196814 no rank 1 400668 species 0 Marinomonas sp. MWYL1 767 Bacterioplanes 437 1 genus 2 1537406 0 1 species 1 1249553 0 Bacterioplanes sanyensis 436 Halomonadaceae 8045 1 family 32 28256 0 77 Halotalea 1 338 376488 2 genus 0 3 0 species 1 376489 335 Halotalea alkalilenta 114403 6 no rank 0 1607 235572 2 genus 0 6 Candidatus Portiera 1 662 656 Candidatus Portiera aleyrodidarum 0 species 1 91844 0 1 114185 2 genus 1 318 Candidatus Carsonella Candidatus Carsonella ruddii 317 114186 1 species 0 Candidatus Evansia 627 1 genus 1495768 2 0 4 species 1 1495769 0 Candidatus Evansia muelleri 623 1 0 genus 2 204286 378 1 Cobetia Cobetia marina 377 28258 1 species 0 2 404432 genus 0 6 Salinicola 1 370 364 Salinicola tamaricis 0 1 1771309 species 0 genus 1 42054 293 0 species 158080 1 293 Chromohalobacter salexigens 11 0 504090 3 genus 1 531 Kushneria 1 157779 species 0 Kushneria marisflavi 249 271 Kushneria konosiri 0 species 1 698828 0 75 genus 2745 15 4451 1 Halomonas 374 Halomonas huangheensis 0 species 1 1178482 275 Halomonas campaniensis 0 species 213554 1 445 Halomonas beimenensis 0 species 1 475662 2404 0 8 2609666 no rank Halomonas sp. 'Soap Lake #7' 272 1962264 1 species 0 328 Halomonas sp. 1513 0 species 1883416 1 1 1610576 species 0 Halomonas sp. R57-5 302 species 1 1949203 0 Halomonas sp. 'Soap Lake #6' 272 Halomonas sp. SF2003 383 species 2136172 1 0 0 species 1971364 1 294 Halomonas sp. GT 1118153 1 species 0 Halomonas sp. GFAJ-1 234 319 Halomonas sp. KO116 0 1504981 1 species Halomonas aestuarii 352 species 1897729 1 0 species 1 507626 0 Halomonas chromatireducens 249 0 115561 1 species 277 Halomonas hydrothermalis 224372 9 family 23 0 Alcanivoracaceae 1 2438 Alcanivorax 1935 1 genus 59753 6 63 0 species 1 1094342 0 Alcanivorax xenomutans 386 379 Alcanivorax dieselolei 0 1 285091 species 349 no rank 1 2638842 0 Alcanivorax sp. NBRC 101098 349 species 1113728 1 0 Alcanivorax pacificus 403 species 1 1306787 0 1 59754 species 0 Alcanivorax borkumensis 355 1 480 Ketobacter 0 24 2025617 2 genus 1917421 1 species 0 Ketobacter alkanivorans 456 0 8 family 3 224379 452 1 Hahellaceae 158481 2 genus 31 0 Hahella 1 444 413 Hahella chejuensis 0 158327 1 species 0 order 3 135615 328 0 7 family 868 3 328 1 Cardiobacteriaceae Dichelobacter 1 321 869 2 genus 5 0 316 Dichelobacter nodosus 0 species 1 870 Xanthomonadales 1 19775 53 135614 order 93 0 Rhodanobacteraceae 2230 1 family 14 1775411 0 31 1 208 Frateuria 4 0 2 70411 genus Frateuria aurantia 204 species 81475 1 0 4 0 genus 2 75309 376 1 Rhodanobacter 666685 1 species 0 Rhodanobacter denitrificans 372 0 3 genus 2 242605 200 1 Luteibacter species 1 242606 0 Luteibacter rhizovicinus 197 206 0 genus 1 2233801 0 species 2021234 1 206 Xanthomonadales bacterium D13 Dyella 1 786 4 231454 genus 0 15 248 Dyella thiooxydans 0 445710 1 species 0 species 231455 1 260 Dyella japonica Dyella jiangningensis 263 1 1379159 species 0 323413 2 genus 6 0 Dokdonella 1 423 Dokdonella koreensis 417 species 323415 1 0 0 146 38 32033 family 1 17452 Xanthomonadaceae genus 68 5 0 14 Lysobacter 2657 1 Lysobacter capsici 788 435897 1 species 0 0 69 1 species 408 Lysobacter enzymogenes 0 species 262324 1 471 Lysobacter gummosus 976 Lysobacter antibioticus 0 species 84531 1 225 genus 83614 1 0 225 Luteimonas sp. 100111 0 2006110 1 species 3 0 2 2370 genus 1 1044 Xylella 0 species 2371 1 1041 Xylella fastidiosa 1 806 Pseudoxanthomonas 0 12 3 83618 genus 233 Pseudoxanthomonas spadix 0 415229 1 species 561 Pseudoxanthomonas suwonensis 0 species 314722 1 1 4325 Stenotrophomonas 0 66 40323 9 genus 479 Stenotrophomonas acidaminiphila 0 1 128780 species 0 216778 1 species 215 Stenotrophomonas rhizophila species 1 83617 0 Stenotrophomonas nitritireducens 281 1195 no rank 4 196198 0 0 species 2005046 1 347 Stenotrophomonas sp. WZN-1 178 Stenotrophomonas sp. LM091 0 species 1904944 1 0 species 1793721 1 308 Stenotrophomonas sp. KCTC 12332 1 1827305 species 0 Stenotrophomonas sp. MYb57 362 2089 0 995085 1 species group 0 40324 1 species 2089 Stenotrophomonas maltophilia genus 338 17 0 197 Xanthomonas 8249 1 348 Xanthomonas sacchari 0 species 1 56458 species 1 1985254 0 Xanthomonas phaseoli 179 0 1 366650 species 236 Xanthomonas alfalfae Xanthomonas oryzae 1621 species 1 347 0 species 48664 1 0 Xanthomonas fragariae 400 1061 Xanthomonas campestris 0 species 339 1 232 Xanthomonas perforans 0 species 442694 1 0 species 29447 1 237 Xanthomonas albilineans 171 Xanthomonas vasicola 0 species 56459 1 Xanthomonas axonopodis 174 53413 1 species 0 0 species 343 1 640 Xanthomonas translucens 0 species 1 456327 254 Xanthomonas euvesicatoria 0 species 1 56454 234 Xanthomonas hortorum 643453 2 species group 0 1936 Xanthomonas citri 1502 species 1 346 0 Xanthomonas fuscans 434 species 366648 1 0 Xanthomonas vesicatoria 329 species 56460 1 0 290 1 Nevskiales 0 3 order 1775403 4 2689614 2 family 0 284 284 1 Steroidobacter 0 14 genus 2 469322 465721 1 species 0 Steroidobacter denitrificans 270 Sinobacteraceae 3 family 568386 1 0 1 43762 Alteromonadales 113 0 105 135622 order 267889 9 family 0 22 Colwelliaceae 1 4982 Thalassotalea 696 1 genus 2 1518149 6 0 1 1763536 species 0 Thalassotalea crassostreae 690 4264 1 Colwellia 0 29 genus 6 28228 Colwellia beringensis 879 species 1967665 1 0 2433 0 no rank 3 196834 species 58049 1 0 Colwellia sp. MT41 693 species 1 1816218 0 Colwellia sp. PAMC 20917 890 Colwellia sp. PAMC 21821 850 1 1816219 species 0 1 28229 species 0 Colwellia psychrerythraea 923 Ferrimonadaceae 1 227 267892 3 family 0 7 1 220 Ferrimonas 0 4 2 44011 genus 216 Ferrimonas balearica 0 44012 1 species 10 0 family 25 267888 14740 1 Pseudoalteromonadaceae Pseudoalteromonas 1 14730 24 53246 genus 0 311 1 43662 species 0 Pseudoalteromonas piscicida 341 Pseudoalteromonas tunicata 707 species 314281 1 0 474 Pseudoalteromonas translucida 0 166935 1 species Pseudoalteromonas haloplanktis 496 species 228 1 0 825 Pseudoalteromonas atlantica 0 288 1 species species 1 267375 0 Pseudoalteromonas marina 436 0 species 28107 1 508 Pseudoalteromonas espejiana 597 Pseudoalteromonas arctica 0 species 394751 1 1 1348114 species 0 Pseudoalteromonas piratica 631 1530 Pseudoalteromonas spongiae 0 species 1 298657 0 43658 1 species 343 Pseudoalteromonas rubra Pseudoalteromonas nigrifaciens 511 1 28109 species 0 0 species 152297 1 479 Pseudoalteromonas issachenkonii 616 Pseudoalteromonas phenolica 0 161398 1 species Pseudoalteromonas agarivorans 468 176102 1 species 0 453 Pseudoalteromonas tetraodonis 0 43659 1 species 583 Pseudoalteromonas aliena 0 1 247523 species 0 no rank 5 194690 3861 0 283699 1 species 595 Pseudoalteromonas sp. Bsw20308 0 1 1761891 species 561 Pseudoalteromonas sp. 13-15 498 Pseudoalteromonas sp. SM9913 0 234831 1 species 0 species 1 1720343 643 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1564 Pseudoalteromonas sp. NC201 0 species 1 1514074 0 species 43657 1 560 Pseudoalteromonas luteoviolacea 790 family 267891 2 0 1 790 Moritella 0 2 2 58050 genus 788 Moritella viscosa 0 80854 1 species Shewanellaceae 8658 1 family 25 267890 0 8 99 0 genus 24 22 8650 1 Shewanella Shewanella japonica 584 species 1 93973 0 Shewanella baltica 844 species 1 62322 0 596 Shewanella psychrophila 0 1 225848 species 189 Shewanella loihica 0 359303 1 species 354 Shewanella piezotolerans 0 species 1 404011 196 Shewanella marisflavi 0 species 1 260364 375 Shewanella violacea 0 60217 1 species 0 56812 1 species 537 Shewanella frigidimarina 0 species 1 192073 326 Shewanella denitrificans 510 Shewanella woodyi 0 species 1 60961 Shewanella putrefaciens 397 species 24 1 0 Shewanella halifaxensis 503 271098 1 species 0 217 Shewanella amazonensis 0 species 1 60478 0 species 70864 1 341 Shewanella pealeana 232 Shewanella oneidensis 0 70863 1 species 0 no rank 6 196818 1678 0 1 2059264 species 307 Shewanella sp. Pdp11 1 351745 species 0 Shewanella sp. W3-18-1 371 260 Shewanella sp. WE21 0 2029986 1 species 0 species 60480 1 222 Shewanella sp. MR-4 0 species 94122 1 253 Shewanella sp. ANA-3 Shewanella sp. MR-7 265 species 60481 1 0 1 271097 species 0 Shewanella sediminis 438 234 Shewanella bicestrii 0 2018305 1 species 30 72275 family 0 29 Alteromonadaceae 1 11728 1751872 2 genus 0 3 Lacimicrobium 1 384 species 1526571 1 0 Lacimicrobium alkaliphilum 381 1008 1 Glaciecola 0 6 genus 3 89404 457 1 2618684 no rank 0 0 species 983545 1 457 Glaciecola sp. 4H-3-7+YE-5 Glaciecola nitratireducens 545 species 1 300231 0 1 3471 Marinobacter 0 127 2742 10 genus 0 no rank 83889 3 1249 1 1671721 species 0 Marinobacter sp. CP1 578 1 490759 species 0 Marinobacter sp. BSs20148 340 species 1749259 1 0 Marinobacter sp. LQ44 331 Marinobacter salinus 293 species 1874317 1 0 284 Marinobacter similis 0 species 1 1420916 1420917 1 species 0 Marinobacter salarius 388 species 1033846 1 0 Marinobacter adhaerens 418 Marinobacter psychrophilus 293 1 330734 species 0 Marinobacter hydrocarbonoclasticus 419 1 2743 species 0 261825 2 genus 2 0 Agarivorans 1 387 species 1 680279 0 Agarivorans gilvus 385 43 0 genus 10 226 5469 1 Alteromonas 899 Alteromonas mediterranea 0 species 1 314275 0 species 715451 1 556 Alteromonas naphthalenivorans species 287094 1 0 Alteromonas addita 504 1249 3 2614992 no rank 0 0 1 1777491 species 450 Alteromonas sp. Mac1 0 species 1917158 1 409 Alteromonas sp. RW2A1 species 2058133 1 0 Alteromonas sp. MB-3u-76 390 Alteromonas macleodii 1192 28108 1 species 0 0 species 589873 1 499 Alteromonas australica Alteromonas stellipolaris 527 species 1 233316 0 Paraglaciecola 980 1 genus 1621534 2 0 1 1 326544 species 0 Paraglaciecola psychrophila 979 0 4 family 4 267894 1446 1 Psychromonadaceae genus 3 67572 5 0 Psychromonas 1442 1 Psychromonas ingrahamii 781 species 357794 1 0 656 1 2614957 no rank 0 0 314282 1 species 656 Psychromonas sp. CNPT3 Idiomarinaceae 1078 1 family 6 267893 1 0 1 1077 Idiomarina 0 22 135575 5 genus Idiomarina piscisalsi 273 species 1096243 1 0 287 Idiomarina loihiensis 0 1 135577 species 0 no rank 2 2614829 495 species 2055892 1 0 Idiomarina sp. X4 301 Idiomarina sp. OT37-5b 194 1 2100422 species 0 Pasteurellales 10123 1 order 32 135625 0 4 0 80 31 712 family 1 10119 Pasteurellaceae 947 1 Actinobacillus 6 0 genus 713 5 173 Actinobacillus succinogenes 0 species 67854 1 718 1 species 0 Actinobacillus equuli 237 Actinobacillus suis 207 species 1 716 0 species 715 1 0 Actinobacillus pleuropneumoniae 324 Aggregatibacter 592 1 genus 416916 3 2 0 304 Aggregatibacter actinomycetemcomitans 0 species 714 1 species 1 732 0 Aggregatibacter aphrophilus 286 155493 2 genus 0 1 Gallibacterium 1 329 0 species 750 1 328 Gallibacterium anatis Histophilus 1 636 2 214906 genus 3 0 0 731 1 species 633 Histophilus somni Mannheimia 1 1182 4 75984 genus 13 0 495 Mannheimia varigena 0 1 85404 species Mannheimia haemolytica 350 1 75985 species 0 0 no rank 2645054 1 324 0 species 1 1432056 324 Mannheimia sp. USDA-ARS-USMARC-1261 3227 1 Haemophilus 0 26 genus 6 724 no rank 1 2609962 0 312 Haemophilus sp. oral taxon 036 312 species 712310 1 0 Haemophilus parainfluenzae 329 species 1 729 0 249188 1 species 0 Haemophilus pittmaniae 264 Haemophilus influenzae 1673 species 1 727 0 623 [Haemophilus] ducreyi 0 730 1 species 471 genus 476528 1 0 0 species 1 47735 471 Bibersteinia trehalosi Pasteurella 1 1814 3 745 genus 0 14 1 747 species 0 Pasteurella multocida 1314 0 754 1 species 486 Pasteurella dagmatis 0 3 genus 2 697331 214 1 Basfia 0 1 157673 species 211 [Mannheimia] succiniciproducens 2 2094023 genus 0 2 Glaesserella 1 627 738 1 species 0 Glaesserella parasuis 625 13 135618 order 0 15 Methylococcales 1 2456 1 2441 Methylococcaceae 0 24 403 12 family genus 39773 2 0 3 Methylomicrobium 484 1 0 1 271065 species 481 Methylomicrobium alcaliphilum 4 0 genus 2 762296 266 1 Methylovulum 262 Methylovulum psychrotolerans 0 1 1704499 species 5 416 genus 0 44 Methylomonas 1 1485 702114 1 species 0 Methylomonas koyamae 297 421 1 species 0 Methylomonas methanica 276 0 species 1538553 1 557 Methylomonas denitrificans no rank 2608980 1 0 311 1727196 1 species 0 Methylomonas sp. DH-1 311 0 3 genus 2 413 182 1 Methylococcus 0 414 1 species 179 Methylococcus capsulatus Aeromonadales 6128 1 order 135624 29 31 0 1 6097 Aeromonadaceae 0 65 28 84642 family Oceanisphaera 1 561 3 225143 genus 0 9 242 Oceanisphaera sp. AMac2203 0 1903694 1 species 0 species 1416627 1 310 Oceanisphaera profunda 43947 2 genus 0 1 Tolumonas 1 204 Tolumonas auensis 203 43948 1 species 0 genus 18 642 0 210 Aeromonas 4653 1 Aeromonas caviae 96 species 648 1 0 0 651 1 species 128 Aeromonas media 1090 Aeromonas hydrophila 0 species 644 1 0 no rank 8 257493 1342 species 1 2033032 0 Aeromonas sp. CA23 196 Aeromonas sp. CU5 152 species 2033033 1 0 110 Aeromonas sp. ASNIH3 0 1 1636608 species 0 1 1758179 species 200 Aeromonas sp. ASNIH5 1 1920107 species 0 Aeromonas sp. ASNIH7 118 species 1636607 1 0 Aeromonas sp. ASNIH2 101 0 species 1636606 1 268 Aeromonas sp. ASNIH1 Aeromonas sp. ASNIH4 197 species 1636609 1 0 117 Aeromonas rivipollensis 0 species 1 948519 species 654 1 0 Aeromonas veronii 502 Aeromonas schubertii 189 species 1 652 0 Aeromonas dhakensis 199 1 196024 species 0 580 Aeromonas salmonicida 0 1 645 species 200 Aeromonas aquatica 0 558964 1 species genus 347533 2 0 6 Zobellella 342 1 336 Zobellella denitrificans 0 347534 1 species 0 3 genus 129577 2 272 1 Oceanimonas 269 0 1 2636315 no rank 269 Oceanimonas sp. GK1 0 species 511062 1 0 phylum 32066 24 23927 30 0 203490 24 class 1 23927 Fusobacteriia Fusobacteriales 23897 1 order 23 203491 0 36 203492 12 family 0 21 Fusobacteriaceae 1 18204 genus 2 167639 0 2 Ilyobacter 655 1 Ilyobacter polytropus 653 167642 1 species 0 genus 848 9 0 79 Fusobacterium 17528 1 Fusobacterium hwasookii 1918 1 1583098 species 0 species 1 861 0 Fusobacterium ulcerans 1059 1048 Fusobacterium mortiferum 0 1 850 species 0 1 849 species 618 Fusobacterium gonidiaformans Fusobacterium nucleatum 6753 species 1 851 0 species 1 856 0 Fusobacterium varium 2164 species 860 1 0 Fusobacterium periodonticum 3473 Fusobacterium necrophorum 416 1 859 species 0 0 24 family 10 1129771 5657 1 Leptotrichiaceae 727 0 1 32068 genus Sebaldella termitidis 727 826 1 species 0 7 0 168808 2 genus 1 713 Sneathia 0 species 1 187101 706 Sneathia amnii 18 0 5 32067 genus 1 3247 Leptotrichia Leptotrichia buccalis 903 species 1 40542 0 2326 3 2633022 no rank 0 species 1785996 1 0 Leptotrichia sp. oral taxon 847 859 686 Leptotrichia sp. oral taxon 212 0 species 712357 1 712368 1 species 0 Leptotrichia sp. oral taxon 498 781 946 genus 34104 1 0 0 species 34105 1 946 Streptobacillus moniliformis 0 clade 2498710 3 297 0 67814 3 phylum 297 Caldisericia 297 1 class 693071 3 3 0 Caldisericales 1 294 693072 2 order 1 0 1 693073 family 0 293 0 genus 1 693074 293 293 Caldisericum exile 0 species 1 693075 57723 19 phylum 0 1821 2 1562566 class 0 193 Chloracidobacterium 1 193 458032 2 genus 0 1 0 1 458033 species 192 Chloracidobacterium thermophilum 0 13 204432 17 class 1 1628 Acidobacteriia 0 5 order 4 332160 363 1 Solibacterales Solibacteraceae 1 358 332161 3 family 6 0 0 5 332162 2 genus 1 352 Candidatus Solibacter species 332163 1 0 Candidatus Solibacter usitatus 347 1252 1 Acidobacteriales 16 0 order 204433 12 1 1236 Acidobacteriaceae 0 10 11 204434 family Candidatus Koribacter 1 196 658061 2 genus 1 0 Candidatus Koribacter versatilis 195 species 658062 1 0 4 0 3 940557 genus 1 391 Granulicella 230 Granulicella tundricola 0 species 1 940615 157 Granulicella mallensis 0 940614 1 species 1 233 Acidobacterium 1 0 33973 2 genus 232 Acidobacterium capsulatum 0 species 33075 1 0 4 genus 3 392733 406 1 Terriglobus species 870903 1 0 Terriglobus saanensis 228 174 Terriglobus roseus 0 species 392734 1 389 phylum 3 1930617 0 class 1962850 3 0 2 Calditrichae 389 1 2 1962852 order 2 0 Calditrichales 1 387 0 family 1962854 1 385 1 187144 genus 0 385 0 1 187145 species 385 Caldithrix abyssi 212 200938 4 phylum 0 212 0 class 118001 4 0 2 4 189769 order 1 212 Chrysiogenales Chrysiogenaceae 1 210 3 189770 family 2 0 Desulfurispirillum 208 1 genus 2 393029 0 8 0 936456 1 species 200 Desulfurispirillum indicum 0 phylum 57 203691 17187 class 57 203692 44 0 Spirochaetia 17187 1 2522 0 9 1643688 order 1 2522 Leptospiraceae 7 0 170 9 family 1 2339 Leptospira 0 12 6 171 genus 1046 Leptospira interrogans 0 species 173 1 418 Leptospira borgpetersenii 0 1 174 species Leptospira alstonii 255 1 28452 species 0 198 Leptospira santarosai 0 species 1 28183 0 1 172 species 410 Leptospira biflexa Turneriella 176 1 genus 338321 2 0 3 0 1 29510 species 173 Turneriella parva 10241 1 Spirochaetales 23 0 order 136 40 3108 1 Spirochaetaceae 0 28 family 137 22 0 1 genus 2 1911556 204 1 Sediminispirochaeta 203 Sediminispirochaeta smaragdinae 0 1 55206 species 333 0 1616789 1 genus 0 species 1 1307761 333 Salinispira pacifica 385 0 genus 2 146 1 154 species 0 Spirochaeta thermophila 165 220 Spirochaeta africana 0 species 1 46355 1 1823 Treponema 17 0 12 157 genus Treponema brennaborense 113 species 1 81028 0 0 species 1 158 223 Treponema denticola 140 Treponema primitia 0 88058 1 species 245 Treponema putidum 0 221027 1 species 0 1 409322 species 288 Treponema pedis Treponema caldarium 202 species 215591 1 0 68 Treponema pallidum 0 160 1 species 0 2638727 1 no rank 111 Treponema sp. OMZ 838 111 species 1 1539298 0 0 1 167 species 255 Treponema succinifaciens 1 53435 species 0 Treponema paraluiscuniculi 79 Treponema azotonutricium 82 150829 1 species 0 genus 4 399320 0 3 Sphaerochaeta 335 1 Sphaerochaeta pleomorpha 128 species 1 1131707 0 0 species 273376 1 122 Sphaerochaeta coccoides Sphaerochaeta globosa 82 species 1131703 1 0 family 17 1643685 0 17 Borreliaceae 7110 1 genus 8 64895 207 0 Borreliella 3089 1 Borrelia mayonii 392 1 1674146 species 0 354 Borreliella bissettii 0 species 64897 1 Borreliella bavariensis 353 species 1 664662 0 0 29518 1 species 424 Borreliella afzelii 649 Borreliella garinii 0 1 29519 species 316 Borreliella valaisiana 0 62088 1 species species 1 139 0 Borreliella burgdorferi 394 8 138 genus 0 118 Borrelia 1 4004 Borrelia turicatae 435 species 1 142 0 1 143 species 0 Borrelia anserina 368 392 Borrelia parkeri 0 species 141 1 Borrelia hermsii 431 species 140 1 0 species 47466 1 0 Borrelia miyamotoi 826 Borrelia recurrentis 596 44449 1 species 0 40834 1 species 0 Borrelia duttonii 838 order 7 1643686 0 10 Brachyspirales 4380 1 Brachyspiraceae 1 4370 143786 6 family 0 8 genus 29521 5 0 23 Brachyspira 4362 1 Brachyspira murdochii 1020 species 84378 1 0 159 1 species 0 Brachyspira hyodysenteriae 1044 species 84377 1 0 Brachyspira intermedia 988 Brachyspira pilosicoli 1287 species 1 52584 0 1147 0 phylum 5 68297 1147 0 class 5 203486 1 1147 Dictyoglomales 1 0 5 203487 order 4 203488 family 0 6 Dictyoglomaceae 1 1146 1140 1 Dictyoglomus 1 0 genus 13 3 604 Dictyoglomus turgidum 0 species 513050 1 1 14 species 0 Dictyoglomus thermophilum 535 5286 0 phylum 200783 26 5286 1 Aquificae 21 0 class 26 187857 1 4323 Aquificales 9 0 20 32069 order 229 90150 1 no rank 0 1 412592 genus 0 229 0 species 412593 1 229 Thermosulfidibacter takaii family 224027 6 0 3 Hydrogenothermaceae 2032 1 Persephonella 501 1 genus 182899 2 5 0 0 species 309805 1 496 Persephonella marina 1 1528 Sulfurihydrogenibium 16 0 212790 3 genus 801 0 2619248 1 no rank 0 436114 1 species 801 Sulfurihydrogenibium sp. YO3AOP1 711 Sulfurihydrogenibium azorense 0 species 309806 1 family 12 64898 2 0 Aquificaceae 2053 1 1 2713 genus 0 91 91 Aquifex aeolicus 0 species 1 63363 1 176 Thermocrinis 1 0 75905 3 genus 0 species 75906 1 77 Thermocrinis ruber 98 Thermocrinis albus 0 species 1 136094 150 0 939 1 genus species 1 940 0 Hydrogenobacter thermophilus 150 6 168657 genus 69 0 Hydrogenobaculum 1 1634 1565 5 2622382 no rank 0 0 species 1 547143 316 Hydrogenobaculum sp. 3684 301 Hydrogenobaculum sp. Y04AAS1 0 species 380749 1 0 species 547144 1 316 Hydrogenobaculum sp. HO 316 Hydrogenobaculum sp. SHO 0 species 547145 1 1 547146 species 0 Hydrogenobaculum sp. SN 316 5 1485951 order 0 942 0 3 family 558314 5 942 1 Desulfurobacteriaceae 0 4 genus 2 64159 826 1 Desulfurobacterium Desulfurobacterium thermolithotrophum 822 1 64160 species 0 Thermovibrio 1 113 171868 2 genus 3 0 228745 1 species 0 Thermovibrio ammonificans 110 2062 0 phylum 200940 9 0 8 67799 9 class 1 2062 Thermodesulfobacteria Thermodesulfobacteriales 2054 1 order 8 188710 0 3 1 2051 Thermodesulfobacteriaceae 0 9 7 188711 family Thermodesulfobacterium 1 1408 3 1740 genus 0 1 Thermodesulfobacterium geofontis 1039 1295609 1 species 0 Thermodesulfobacterium commune 368 species 1 1741 0 0 genus 1 444090 329 329 Caldimicrobium thiodismutans 0 species 1653476 1 genus 2 241192 5 0 Thermodesulfatator 305 1 1 171695 species 0 Thermodesulfatator indicus 300 0 277 2157 superkingdom 31234 0 clade 1783275 54 5164 2600 0 39 28889 phylum 0 1 183924 39 class 1 2600 Thermoprotei 312 order 3 871006 0 871007 2 family 1 0 Acidilobaceae 1 12 11 105850 1 genus 0 0 species 242703 1 11 Acidilobus saccharovorans 1 255472 family 0 300 300 0 genus 200414 1 0 species 1 200415 300 Caldisphaera lagunensis 425 0 order 13 114380 0 2 9 2272 family 1 325 Desulfurococcaceae 34 genus 54253 1 0 34 Thermosphaera aggregans 0 54254 1 species 194 2 2279 genus 0 species 1 84599 0 Staphylothermus hellenicus 67 Staphylothermus marinus 127 species 2280 1 0 11 477695 1 genus 0 0 species 1 1200300 11 Thermogladius calderae 43 0 2 2273 genus 0 2275 1 species 11 Desulfurococcus mucosus Desulfurococcus amylolyticus 32 1 94694 species 0 genus 2 54258 0 41 0 1 160233 species 18 Ignicoccus hospitalis Ignicoccus islandicus 23 54259 1 species 0 1 100 Pyrodictiaceae 2 0 2307 4 family 30 0 54251 1 genus Pyrolobus fumarii 30 54252 1 species 0 19 0 genus 1 2308 19 Pyrodictium delaneyi 0 1273541 1 species 49 0 genus 54247 1 0 1 54248 species 49 Hyperthermus butylicus 0 order 2266 11 358 0 family 6 2267 234 0 164450 2 genus 121 species 985052 1 0 Vulcanisaeta moutnovskia 67 54 Vulcanisaeta distributa 0 1 164451 species 58 0 2 2270 genus 30 Thermoproteus uzoniensis 0 species 184117 1 Thermoproteus tenax 28 2271 1 species 0 25 0 2276 1 genus species 2277 1 0 Pyrobaculum islandicum 25 0 genus 1 76886 30 species 76887 1 0 Caldivirga maquilingensis 30 124 5 114378 family 0 Thermofilum 124 1 genus 2268 5 0 2 Thermofilum adornatus 47 species 1 1365176 0 1483572 1 species 0 Thermofilum carboxyditrophus 44 1 2269 species 0 Thermofilum pendens 12 19 Thermofilum uzonense 0 1 1550241 species 0 1 order 11 2281 1504 1 Sulfolobales 1503 10 118883 family 0 Sulfolobus 660 1 genus 2284 4 2 0 344 Sulfolobus islandicus 0 43080 1 species 178 2641160 1 no rank 0 species 1891280 1 0 Sulfolobus sp. A20 178 Sulfolobus acidocaldarius 136 species 2285 1 0 69655 1 genus 0 301 301 Sulfolobus tokodaii 0 111955 1 species 190 0 genus 1 2100760 species 1 2287 0 Sulfolobus solfataricus 190 215 1 Acidianus 4 0 genus 2 12914 0 species 1 563177 211 Acidianus hospitalis 137 0 genus 2 41980 0 1006005 1 species 97 Metallosphaera cuprina 40 Metallosphaera sedula 0 species 43687 1 31 51967 1 phylum 0 31 genus 498845 1 0 0 498846 1 species 31 Candidatus Korarchaeum cryptofilum 2533 0 phylum 651137 14 518 5 651142 no rank 0 9 0 2 1593364 genus 1 336 Candidatus Nitrosopelagicus Candidatus Nitrosopelagicus brevis 327 species 1 1410606 0 0 2 1825023 3 genus 1 182 Candidatus Nitrosotenuis 86 Candidatus Nitrosotenuis sp. AQ6f 0 1846278 1 species 94 Candidatus Nitrosotenuis cloacae 0 species 1603555 1 0 2 3 1643678 class 1 693 Nitrososphaeria order 1968909 1 0 386 386 1 1968910 family 0 0 1 498374 genus 386 386 Candidatus Nitrosocaldus islandicus 0 species 2045011 1 0 1 1033996 order 305 0 family 1033997 1 305 0 1 497726 genus 305 Nitrososphaera viennensis 305 species 1034015 1 0 1322 order 6 31932 0 family 6 338190 2 0 Nitrosopumilaceae 1322 1 Nitrosopumilus 798 1 genus 3 338191 0 7 Candidatus Nitrosopumilus sediminis 351 1229909 1 species 0 Candidatus Nitrosopumilus adriaticus 440 species 1 1580092 0 1 522 Candidatus Nitrosomarinus 0 2 2 1993653 genus 0 1898749 1 species 520 Candidatus Nitrosomarinus catalina clade 1 1783276 0 44 0 phylum 1 1801631 44 44 genus 2490204 1 0 Candidatus Micrarchaeota archaeon Mia14 44 species 1920749 1 0 phylum 222 28890 0 26026 13122 0 clade 2290931 109 class 224756 51 0 7 Methanomicrobia 5217 1 Methanocellales 1 202 570264 5 order 2 0 0 2 family 4 570265 200 1 Methanocellaceae 1 198 Methanocella 0 4 570266 3 genus species 1 1175444 0 Methanocella conradii 69 0 1175445 1 species 125 Methanocella arvoryzae 1 4186 Methanosarcinales 15 0 27 94695 order 2206 23 family 0 13 Methanosarcinaceae 1 3925 0 genus 1 2220 85 0 1 420950 species 85 Methanolobus psychrophilus 0 2321 1 genus 230 230 Methanohalobium evestigatum 0 2322 1 species 1 123 Methanomethylovorans 0 4 101191 2 genus 0 1 101192 species 119 Methanomethylovorans hollandica 1 2790 Methanosarcina 13 0 2207 13 genus 0 species 418008 1 186 Methanosarcina horonobensis Methanosarcina lacustris 153 1 170861 species 0 2210 1 species 0 Methanosarcina thermophila 206 621 Methanosarcina barkeri 0 species 2208 1 species 2209 1 0 Methanosarcina mazei 273 Methanosarcina acetivorans 171 species 2214 1 0 Methanosarcina siciliae 222 1 38027 species 0 731 0 4 2644672 no rank 0 species 1434099 1 231 Methanosarcina sp. Kolksee 0 1434100 1 species 224 Methanosarcina sp. MTP4 123 Methanosarcina sp. WWM596 0 1434103 1 species Methanosarcina sp. WH1 153 species 1 1434102 0 1 2215 species 0 Methanosarcina vacuolata 214 175 0 genus 196136 1 species 1 39669 0 Methanosalsum zhilinae 175 2 2175 genus 0 256 species 2177 1 0 Methanohalophilus halophilus 125 0 species 2176 1 131 Methanohalophilus mahii 253 2 2225 genus 0 0 29291 1 species 107 Methanococcoides burtonii 1 2226 species 0 Methanococcoides methylutens 146 246 0 143067 3 family 246 1 Methanothrix 2 0 genus 2222 3 Methanothrix soehngenii 136 species 2223 1 0 108 Methanosaeta harundinacea 0 species 1 301375 order 2191 18 0 7 Methanomicrobiales 822 1 139 196137 2 family 0 8 0 2 2202 genus 1 139 Methanospirillum Methanospirillum hungatei 131 species 2203 1 0 67 0 family 88404 2 6 0 2 2192 genus 1 67 Methanocorpusculum 0 83984 1 species 61 Methanocorpusculum labreanum Methanoregulaceae 1 224 1198451 6 family 7 0 genus 475087 2 0 1 Methanosphaerula 95 1 Methanosphaerula palustris 94 species 1 475088 0 Methanoregula 1 122 3 395331 genus 0 1 358766 1 species 0 Methanoregula boonei 58 Methanoregula formicica 63 species 882104 1 0 1 385 Methanomicrobiaceae 0 8 2194 7 family Methanolacinia 1 105 230355 2 genus 0 2 103 Methanolacinia petrolearia 0 species 54120 1 1 272 Methanoculleus 0 8 4 45989 genus species 1 2198 0 Methanoculleus marisnigri 100 102 Methanoculleus bourgensis 0 83986 1 species 2619537 1 no rank 0 62 0 86622 1 species 62 Methanoculleus sp. MAB1 1 7905 Halobacteria 25 0 58 183963 class Natrialbales 3087 1 order 17 1644060 0 26 family 16 1644061 22 0 Natrialbaceae 3061 1 0 genus 1269201 1 178 0 no rank 2621923 1 178 178 Salinarchaeum sp. Harcht-Bsk1 0 1333523 1 species 278 203193 1 genus 0 0 1 229731 species 278 Halobiforma lacisalsi 0 88723 2 genus 289 120 0 1 2622230 no rank 1 406552 species 0 Natrinema sp. J7-2 120 169 Natrinema pellirubrum 0 1 69525 species 63742 2 genus 0 2 Natrialba 1 1088 Natrialba magadii 1086 1 13769 species 0 1 29287 genus 0 189 species 1 29288 0 Natronococcus occultus 189 223 1 387342 genus 0 Halopiger xanaduensis 223 species 1 387343 0 1 139 Halostagnicola 0 1 353799 2 genus 0 353800 1 species 138 Halostagnicola larsenii 2 2256 genus 4 0 Natronobacterium 1 156 152 Natronobacterium gregoryi 0 species 1 44930 121871 3 genus 0 3 Haloterrigena 1 499 252 Haloterrigena daqingensis 0 1 588898 species 244 Haloterrigena turkmenica 0 species 62320 1 Haloferacales 2897 1 order 18 1644055 24 0 0 2 1963271 7 family 1 773 Halorubraceae genus 1644057 2 8 0 Salinigranum 283 1 0 1 755307 species 275 Salinigranum rubrum 1 151 Halopenitus 5 0 2 1209988 genus 0 1048396 1 species 146 Halopenitus persicus 0 genus 2 56688 337 0 1 29284 species 202 Halorubrum trapanicum Halorubrum lacusprofundi 135 2247 1 species 0 no rank 1 2678336 0 114 species 756883 1 0 halophilic archaeon DL31 114 1986 1 Haloferacaceae 12 0 family 1644056 9 3 0 4 2251 genus 1 662 Haloferax Haloferax volcanii 296 species 2246 1 0 Haloferax gibbonsii 236 species 35746 1 0 127 Haloferax mediterranei 0 1 2252 species 1 0 293431 2 genus 1 1209 Haloquadratum species 293091 1 0 Haloquadratum walsbyi 1208 Halogeometricum 1 103 60846 2 genus 4 0 99 Halogeometricum borinquense 0 1 60847 species 1896 1 Halobacteriales 0 11 order 2235 22 0 family 2236 9 728 Halanaeroarchaeum 1 60 1656823 2 genus 6 0 species 1 1604004 0 Halanaeroarchaeum sulfurireducens 54 Halobacterium 1 482 2239 4 genus 0 5 0 2668073 1 no rank 158 Halobacterium sp. DL1 158 751944 1 species 0 Halobacterium salinarum 127 2242 1 species 0 Halobacterium hubeiense 192 1407499 1 species 0 123 0 332246 1 genus Halalkalicoccus jeotgali 123 413810 1 species 0 6 0 genus 2 1980514 63 1 Halodesulfurarchaeum species 1873524 1 0 Halodesulfurarchaeum formicicum 57 Haloarculaceae 1 1157 1963268 12 family 0 4 0 146825 2 genus 182 Halorhabdus utahensis 83 species 146826 1 0 1 430914 species 0 Halorhabdus tiamatea 99 155 203135 1 genus 0 1 57705 species 0 Halomicrobium mukohataei 155 2237 5 genus 0 1 Haloarcula 1 432 1932004 1 species 0 Haloarcula taiwanensis 110 51589 1 species 0 Haloarcula hispanica 116 112 0 no rank 2624677 1 1 1592728 species 0 Haloarcula sp. CBA1115 112 93 Haloarcula marismortui 0 1 2238 species genus 1 1073987 0 141 1 2648975 no rank 0 141 141 Halorientalis sp. IM1011 0 1932360 1 species 243 genus 2 63743 0 Natronomonas moolapensis 159 species 416273 1 0 species 2257 1 0 Natronomonas pharaonis 84 464 0 class 183980 8 0 8 2231 order 464 464 0 family 2232 8 0 genus 190818 2 108 0 species 113653 1 50 Geoglobus ahangari 58 Geoglobus acetivorans 0 species 1 565033 54 54260 1 genus 0 0 species 1 54261 54 Ferroglobus placidus 2233 5 genus 0 6 Archaeoglobus 1 302 0 58290 1 species 59 Archaeoglobus veneficus species 1316941 1 0 Archaeoglobus sulfaticallidus 75 Archaeoglobus fulgidus 69 species 1 2234 0 Archaeoglobus profundus 93 1 84156 species 0 0 clade 21 2283796 1748 213 clade 1803510 3 0 1 213 Aciduliprofundum 8 0 379546 3 genus 1 2633939 no rank 0 74 species 673860 1 0 Aciduliprofundum sp. MAR08-339 74 0 379547 1 species 131 Aciduliprofundum boonei 1535 0 18 183967 class order 4 1235850 0 469 120 family 2517203 1 0 0 1 1291539 genus 120 Candidatus Methanomethylophilus alvus 120 1291540 1 species 0 Methanomassiliicoccaceae 349 1 family 3 1577788 1 0 0 genus 1 1607807 121 121 Candidatus Methanoplasma termitum 0 species 1577791 1 227 0 genus 1 1080709 Candidatus Methanomassiliicoccus intestinalis 227 1 1406512 species 0 2301 13 order 0 3 Thermoplasmatales 1 928 218 1 Cuniculiplasmataceae 0 3 family 3 1747776 4 0 2 1747777 genus 1 215 Cuniculiplasma 211 Cuniculiplasma divulgatum 0 species 1 1673428 190 0 family 46659 3 0 10 2302 3 genus 1 190 Thermoplasma 0 species 1 2303 72 Thermoplasma acidophilum Thermoplasma volcanium 108 species 1 50339 0 46630 2 family 0 151 1 0 46631 2 genus 1 151 Picrophilus 1 82076 species 0 Picrophilus torridus 150 family 3 90142 0 279 1 279 Ferroplasma 12 0 74968 3 genus 146 Ferroplasma acidiphilum 0 74969 1 species 121 Ferroplasma acidarmanus 0 species 97393 1 no rank 1 1919231 0 87 87 Thermoplasmatales archaeon BRNA1 0 1 1054217 species 138 1234666 1 no rank 0 methanogenic archaeon ISO4-H5 138 species 1495144 1 0 0 clade 2283794 44 8753 0 6 183925 25 class 1 4201 Methanobacteria 3 0 order 24 2158 4195 1 Methanobacteriales 0 2178 1 family 313 0 1 2179 genus 313 0 species 1 2180 313 Methanothermus fervidus 3879 1 Methanobacteriaceae 10 0 family 2159 22 Methanobacterium 1 1072 2160 8 genus 11 0 Methanobacterium formicicum 157 1 2162 species 0 Methanobacterium paludis 199 species 1 868131 0 120 Methanobacterium subterraneum 0 species 1 59277 249 0 2 2627676 no rank Methanobacterium sp. MB1 107 1 1379702 species 0 0 species 1911685 1 142 Methanobacterium sp. MZ-A1 1 118062 species 0 Methanobacterium congolense 150 Methanobacterium lacus 186 1 877455 species 0 1 2142 Methanobrevibacter 2 0 2172 7 genus Methanobrevibacter ruminantium 268 species 1 83816 0 429 Methanobrevibacter smithii 0 species 2173 1 0 2 2638681 no rank 560 0 species 1 1609968 273 Methanobrevibacter sp. YE315 species 224719 1 0 Methanobrevibacter sp. AbM4 287 species 294671 1 0 Methanobrevibacter olleyae 475 Methanobrevibacter millerae 408 species 1 230361 0 Methanothermobacter 1 235 5 145260 genus 0 6 Methanothermobacter marburgensis 74 1 145263 species 0 Methanothermobacter thermautotrophicus 41 145262 1 species 0 59 2631116 1 no rank 0 59 Methanothermobacter sp. CaT2 0 1 866790 species Methanothermobacter wolfeii 55 1 145261 species 0 0 genus 1 2316 420 species 1 2317 0 Methanosphaera stadtmanae 420 4 0 class 183939 19 4552 1 Methanococci 4548 1 Methanococcales 0 1 order 18 2182 Methanococcaceae 1 2450 7 2183 family 0 7 2126 1 Methanococcus 0 3 genus 2184 5 Methanococcus voltae 351 2188 1 species 0 42879 1 species 0 Methanococcus aeolicus 331 303 Methanococcus vannielii 0 species 2187 1 species 39152 1 0 Methanococcus maripaludis 1138 317 genus 1 155862 0 317 Methanothermococcus okinawensis 0 155863 1 species 6 0 family 196117 10 2097 1 Methanocaldococcaceae 16 0 196118 7 genus 1 1822 Methanocaldococcus species 1 83171 0 Methanocaldococcus fervens 313 1 67760 species 0 Methanocaldococcus infernus 243 0 73913 1 species 320 Methanocaldococcus vulcanius species 1 2190 0 Methanocaldococcus jannaschii 295 322 0 1 2641196 no rank 1 644281 species 0 Methanocaldococcus sp. FS406-22 322 Methanocaldococcus bathoardescens 313 1301915 1 species 0 196119 2 genus 1 0 Methanotorris 1 269 268 Methanotorris igneus 0 2189 1 species 1939 0 40 183968 class 0 5 order 2258 40 1939 1 Thermococcales 2259 39 family 0 2 Thermococcaceae 1 1934 17 0 2263 29 genus 1 1355 Thermococcus Thermococcus nautili 36 195522 1 species 0 0 species 54262 1 56 Thermococcus chitonophagus 0 species 1 110164 24 Thermococcus guaymasensis 20 Thermococcus eurythermalis 0 species 1 1505907 Thermococcus profundus 45 1 49899 species 0 35 Thermococcus radiotolerans 0 species 187880 1 Thermococcus gorgonarius 26 71997 1 species 0 species 172049 1 0 Thermococcus sibiricus 100 201 no rank 6 2627626 0 Thermococcus sp. 2319x1 53 species 1 1674923 0 Thermococcus sp. 4557 34 1042877 1 species 0 29 Thermococcus sp. EXT12c 0 species 1 2016361 34 Thermococcus sp. AM4 0 species 1 246969 0 1 2008440 species 26 Thermococcus sp. 5-4 25 Thermococcus sp. P6 0 species 1 122420 0 species 55802 1 145 Thermococcus barophilus Thermococcus onnurineus 37 species 342948 1 0 species 1 163003 0 Thermococcus cleftensis 37 Thermococcus piezophilus 31 1 1712654 species 0 277988 1 species 0 Thermococcus thioreducens 26 species 1 54077 0 Thermococcus barossii 32 26 Thermococcus pacificus 0 species 71998 1 Thermococcus kodakarensis 18 species 1 311400 0 species 187878 1 0 Thermococcus gammatolerans 27 Thermococcus siculi 176 1 72803 species 0 0 species 53952 1 26 Thermococcus peptonophilus 0 582419 1 species 105 Thermococcus paralvinellae 32 Thermococcus celer 0 2264 1 species Thermococcus litoralis 77 1 2265 species 0 8 2260 genus 0 6 Pyrococcus 1 493 0 1609559 1 species 70 Pyrococcus kukulkanii 0 no rank 2629106 2 152 1 1183377 species 0 Pyrococcus sp. ST04 90 Pyrococcus sp. NA2 62 342949 1 species 0 Pyrococcus yayanosii 26 1 1008460 species 0 Pyrococcus furiosus 113 2261 1 species 0 1 29292 species 0 Pyrococcus abyssi 65 61 Pyrococcus horikoshii 0 species 53953 1 83867 1 genus 0 84 971279 1 species 0 Palaeococcus pacificus 84