members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 21856223 31 83825 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4829 0 name 1 0 2157 87598 0 superkingdom 290 7050 1783275 0 59 clade phylum 2 51967 77 0 4 0 1 77 498845 2 Candidatus Korarchaeum genus 0 498846 73 Candidatus Korarchaeum cryptofilum 1 species 4951 28889 0 44 phylum 1 4951 183924 0 1 class 44 Thermoprotei 0 2266 1365 13 order 7 Thermoproteaceae family 1 554 2267 13 0 91 76886 0 genus 1 0 91 76887 species Caldivirga maquilingensis 1 genus 1 0 2276 69 Pyrobaculum islandicum 1 species 2277 69 0 2 genus 164450 158 0 78 164451 0 species 1 Vulcanisaeta distributa 0 80 985052 species Vulcanisaeta moutnovskia 1 0 223 2270 2 genus 0 102 184117 species Thermoproteus uzoniensis 1 0 2271 121 Thermoproteus tenax 1 species 1 811 114378 17 0 6 Thermofilaceae family 2268 1 794 0 7 genus 5 Thermofilum Thermofilum pendens 1 species 0 2269 194 1550241 142 0 species 1 Thermofilum uzonense 1 Thermofilum carboxyditrophus species 1483572 206 0 species Thermofilum adornatus 1 0 245 1365176 17 Desulfurococcales order 9 0 114380 1 1177 0 411 2307 family 5 101 1 2308 2 0 Pyrodictium 2 genus species Pyrodictium delaneyi 1 0 99 1273541 54251 83 0 genus 1 83 54252 0 species 1 Pyrolobus fumarii 1 227 54247 0 4 genus Hyperthermus 2 Hyperthermus butylicus 1 species 223 54248 0 0 3 2272 757 1 family 11 Desulfurococcaceae genus 3 Desulfurococcus 0 1 2273 1 170 115 94694 0 species Desulfurococcus amylolyticus 1 1 Desulfurococcus mucosus species 54 2275 0 1 270 2279 0 2 genus Staphylothermus 3 0 84599 129 species 1 Staphylothermus hellenicus Staphylothermus marinus 1 species 2280 139 0 0 54253 77 genus 1 0 54254 77 species Thermosphaera aggregans 1 2 genus 0 172 54258 0 54259 49 species Ignicoccus islandicus 1 1 Ignicoccus hospitalis species 123 160233 0 0 477695 65 1 genus 1200300 65 0 species 1 Thermogladius calderae 10 Sulfolobales order 1 0 2281 1964 1 118883 1963 0 9 family 1 genus 197 2100760 0 1 Sulfolobus solfataricus species 197 2287 0 0 1 1 822 2284 genus 4 Sulfolobus 43080 507 0 species 1 Sulfolobus islandicus species 1 Sulfolobus acidocaldarius 0 124 2285 0 2641160 190 1 no rank 190 1891280 0 species 1 Sulfolobus sp. A20 genus 2 173 41980 0 1 Metallosphaera cuprina species 0 134 1006005 0 43687 39 1 Metallosphaera sedula species 0 376 12914 genus 1 1 Acidianus hospitalis species 0 563177 376 1 genus 0 69655 395 species 1 Sulfolobus tokodaii 0 395 111955 order 3 871006 444 0 871007 102 0 family 2 2 Acidilobus genus 105850 1 102 1 0 species Acidilobus saccharovorans 1 0 101 242703 255472 342 0 1 family 342 200414 0 genus 1 Caldisphaera lagunensis 1 species 0 342 200415 13 phylum 2022 651137 0 class 5 1643678 596 0 3 Nitrososphaerales order 3 0 1033996 1 376 1 373 1033997 0 8 family Nitrososphaeraceae 2 1 genus 497726 365 0 species Nitrososphaera viennensis 1 365 1034015 0 0 1968909 220 2 order Candidatus Nitrosocaldaceae 2 family 1 0 1 220 1968910 1 genus 219 498374 0 219 2045011 0 1 Candidatus Nitrosocaldus islandicus species 3 no rank 0 651142 446 0 192 1825023 2 genus 1846278 95 0 1 Candidatus Nitrosotenuis sp. AQ6f species 1 Candidatus Nitrosotenuis cloacae species 0 1603555 97 0 1593364 254 1 genus 1410606 254 0 species 1 Candidatus Nitrosopelagicus brevis 31932 1 980 0 2 order Nitrosopumilales 5 1 0 338190 978 1 Nitrosopumilaceae 4 family genus 1 0 337 1993653 0 337 1898749 species 1 Candidatus Nitrosomarinus catalina 338191 640 0 2 genus 1580092 297 0 Candidatus Nitrosopumilus adriaticus 1 species Candidatus Nitrosopumilus sediminis 1 species 0 1229909 343 0 1783276 55 clade 1 phylum 1 0 55 1801631 genus 1 0 2490204 55 0 1920749 55 Candidatus Micrarchaeota archaeon Mia14 1 species Euryarchaeota 230 phylum 4 0 1 80493 28890 183980 1437 0 class 10 0 1437 2231 order 10 2232 1 1437 1 0 Archaeoglobaceae 10 family genus 2 Ferroglobus 0 1 1 112 54260 1 Ferroglobus placidus species 111 54261 0 4 genus 0 740 2233 Archaeoglobus profundus 1 species 114 84156 0 1 Archaeoglobus veneficus species 0 169 58290 0 231 1316941 species Archaeoglobus sulfaticallidus 1 Archaeoglobus fulgidus 1 species 0 226 2234 1 584 190818 2 0 3 Geoglobus genus 113653 392 0 species Geoglobus ahangari 1 0 565033 190 species 1 Geoglobus acetivorans 8665 1 183968 0 10 class Thermococci 41 1 8655 2258 16 0 Thermococcales 40 order family Thermococcaceae 39 1 8639 2259 0 33 genus 29 Thermococcus 0 99 7517 1 2263 1 Thermococcus nautili species 325 195522 0 species Thermococcus barophilus 1 55802 432 0 1 Thermococcus gammatolerans species 187878 265 0 Thermococcus onnurineus 1 species 274 342948 0 1 Thermococcus guaymasensis species 110164 197 0 Thermococcus chitonophagus 1 species 0 54262 203 0 304 54077 1 Thermococcus barossii species species Thermococcus piezophilus 1 0 201 1712654 species Thermococcus cleftensis 1 0 163003 323 no rank 6 0 2627626 1680 2016361 430 0 Thermococcus sp. EXT12c 1 species 136 122420 0 species Thermococcus sp. P6 1 species Thermococcus sp. 4557 1 0 365 1042877 1 Thermococcus sp. AM4 species 252 246969 0 2008440 363 0 1 Thermococcus sp. 5-4 species 0 1674923 134 1 Thermococcus sp. 2319x1 species species Thermococcus siculi 1 273 72803 0 Thermococcus thioreducens 1 species 0 183 277988 0 300 2265 1 Thermococcus litoralis species Thermococcus pacificus 1 species 0 71998 235 Thermococcus gorgonarius 1 species 0 71997 169 0 252 49899 1 Thermococcus profundus species 1 Thermococcus kodakarensis species 208 311400 0 species 1 Thermococcus eurythermalis 0 1505907 274 species Thermococcus celer 1 0 312 2264 1 Thermococcus sibiricus species 182 172049 0 0 53952 198 1 Thermococcus peptonophilus species 0 263 582419 Thermococcus paralvinellae 1 species 365 187880 0 species 1 Thermococcus radiotolerans 1 genus 83867 127 0 1 Palaeococcus pacificus species 127 971279 0 8 Pyrococcus genus 11 0 962 1 2260 species 1 Pyrococcus abyssi 29292 51 0 1609559 105 0 species Pyrococcus kukulkanii 1 1 Pyrococcus horikoshii species 53953 124 0 0 2629106 372 2 no rank 0 1183377 191 1 Pyrococcus sp. ST04 species 342949 181 0 1 Pyrococcus sp. NA2 species 0 2261 152 species Pyrococcus furiosus 1 0 147 1008460 species 1 Pyrococcus yayanosii 0 4721 2283796 clade 21 19 Thermoplasmata class 19 0 4409 1 183967 1 no rank 839 1234666 0 species methanogenic archaeon ISO4-H5 1 839 1495144 0 0 6 2301 2136 1 order 11 Thermoplasmatales no rank 1 0 1919231 1001 species Thermoplasmatales archaeon BRNA1 1 1001 1054217 0 family Picrophilaceae 2 0 2 46630 234 1 genus 1 0 46631 232 0 82076 232 Picrophilus torridus 1 species 0 1 1 344 46659 family Thermoplasmataceae 3 0 2302 343 genus 2 0 2303 206 species Thermoplasma acidophilum 1 0 137 50339 Thermoplasma volcanium 1 species 189 1747776 0 family 2 6 0 1747777 1 189 2 Cuniculiplasma genus 0 1673428 183 Cuniculiplasma divulgatum 1 species 362 90142 0 2 family 0 362 74968 2 genus species 1 Ferroplasma acidarmanus 179 97393 0 species Ferroplasma acidiphilum 1 74969 183 0 order Methanomassiliicoccales 6 1235850 1 1415 0 2 638 2517203 0 2 family 1291539 638 1 16 0 2 Candidatus Methanomethylophilus genus 1291540 622 0 Candidatus Methanomethylophilus alvus 1 species 3 Methanomassiliicoccaceae family 4 0 1577788 1 775 1 genus 0 288 1607807 1 Candidatus Methanoplasma termitum species 288 1577791 0 0 483 1080709 1 genus Candidatus Methanomassiliicoccus intestinalis 1 species 0 483 1406512 clade 2 0 312 1803510 0 312 379546 genus 2 0 259 379547 species 1 Aciduliprofundum boonei 0 2633939 53 1 no rank species 1 Aciduliprofundum sp. MAR08-339 673860 53 0 clade 115 2290931 52108 0 class Methanomicrobia 50 0 28 224756 22074 1 0 51 2191 1 5927 order 15 Methanomicrobiales 0 6 3090 1 2194 family 6 Methanomicrobiaceae 528 230355 0 1 genus Methanolacinia petrolearia 1 species 54120 528 0 Methanoculleus 4 genus 45989 2556 1 43 0 1049 83986 0 species Methanoculleus bourgensis 1 Methanoculleus marisnigri 1 species 2198 847 0 1 no rank 0 2619537 617 86622 617 0 1 Methanoculleus sp. MAB1 species 1 1654 1198451 5 0 6 Methanoregulaceae family genus 3 Methanoregula 0 5 395331 1 1206 Methanoregula boonei 1 species 0 465 358766 736 882104 0 species Methanoregula formicica 1 genus 2 Methanosphaerula 443 1 475087 0 2 475088 441 0 1 Methanosphaerula palustris species 0 88404 789 family 1 0 789 2192 1 genus 1 Methanocorpusculum labreanum species 0 789 83984 0 196137 343 family 1 1 genus 0 343 2202 343 2203 0 Methanospirillum hungatei 1 species order Methanocellales 5 0 29 570264 1375 1 0 3 570265 1346 1 family Methanocellaceae 4 0 6 1 1343 570266 genus 3 Methanocella 1020 1175445 0 species Methanocella arvoryzae 1 Methanocella conradii 1 species 317 1175444 0 0 19 1 14744 94695 order 29 Methanosarcinales 1 1301 143067 0 16 family Methanosaetaceae 4 genus Methanothrix 3 0 7 2222 1285 1 0 2223 525 species 1 Methanothrix soehngenii 753 301375 0 species Methanosaeta harundinacea 1 Methanosarcinaceae 24 family 1 13424 2206 15 0 1 genus 0 2321 367 367 2322 0 1 Methanohalobium evestigatum species 0 101191 799 1 genus 101192 799 0 1 Methanomethylovorans hollandica species genus 1 509 196136 0 0 39669 509 1 Methanosalsum zhilinae species Methanococcoides 3 genus 23 0 874 1 2225 species 1 Methanococcoides burtonii 29291 475 0 0 2226 376 species Methanococcoides methylutens 1 genus Methanosarcina 13 2207 1 9091 0 27 species 1 Methanosarcina lacustris 436 170861 0 1854 2208 0 1 Methanosarcina barkeri species species Methanosarcina thermophila 1 0 499 2210 species Methanosarcina siciliae 1 0 38027 879 1 Methanosarcina horonobensis species 418008 782 0 0 2644672 2174 no rank 4 1434100 501 0 1 Methanosarcina sp. MTP4 species 1 Methanosarcina sp. WH1 species 1434102 549 0 0 1434103 544 species Methanosarcina sp. WWM596 1 1434099 580 0 Methanosarcina sp. Kolksee 1 species 1 Methanosarcina acetivorans species 0 2214 886 0 2209 955 species 1 Methanosarcina mazei 599 2215 0 species Methanosarcina vacuolata 1 4 0 2220 1 989 Methanolobus 2 genus 0 985 420950 species Methanolobus psychrophilus 1 2 genus 0 780 2175 Methanohalophilus mahii 1 species 2176 404 0 0 376 2177 species 1 Methanohalophilus halophilus class Halobacteria 65 0 219 183963 30034 1 113 0 1 11825 2235 27 Halobacteriales order 2236 1 3852 14 0 10 Halobacteriaceae family 1656823 1 285 4 0 Halanaeroarchaeum 2 genus 1604004 281 0 species Halanaeroarchaeum sulfurireducens 1 Halobacterium 4 genus 1 2409 2239 47 0 2242 456 0 species Halobacterium salinarum 1 Halobacterium hubeiense 1 species 0 1407499 872 no rank 1 2668073 1034 0 1 Halobacterium sp. DL1 species 0 751944 1034 genus Halalkalicoccus 2 704 1 332246 0 23 species Halalkalicoccus jeotgali 1 681 413810 0 1980514 440 0 genus 1 1873524 440 0 species 1 Halodesulfurarchaeum formicicum 1 7860 1963268 100 0 16 Haloarculaceae family 1005 1 1073987 6 0 Halorientalis 2 genus 0 999 2648975 no rank 1 species Halorientalis sp. IM1011 1 999 1932360 0 0 3 63743 1 1064 genus 3 Natronomonas 0 445 416273 species 1 Natronomonas moolapensis 1 Natronomonas pharaonis species 2257 616 0 genus Halorhabdus 3 0 8 1512 1 146825 0 802 146826 species 1 Halorhabdus utahensis species 1 Halorhabdus tiamatea 702 430914 0 3166 1 2237 0 156 genus Haloarcula 5 species Haloarcula marismortui 1 2238 834 0 1 Haloarcula taiwanensis species 1932004 604 0 0 767 2624677 1 no rank 1592728 767 0 Haloarcula sp. CBA1115 1 species species 1 Haloarcula hispanica 0 51589 805 Halomicrobium 2 genus 32 0 1013 1 203135 981 57705 0 species Halomicrobium mukohataei 1 order 19 Natrialbales 0 90 1644060 8994 1 Natrialbaceae 18 family 108 0 1 8904 1644061 0 1269201 750 genus 1 750 2621923 0 1 no rank Salinarchaeum sp. Harcht-Bsk1 1 species 0 750 1333523 1 547 2256 0 1 genus 2 Natronobacterium 0 546 44930 species 1 Natronobacterium gregoryi genus 3 Haloterrigena 0 49 121871 1 1704 0 62320 1116 species Haloterrigena turkmenica 1 Haloterrigena daqingensis 1 species 588898 539 0 3 0 1 617 63742 Natrialba 2 genus 614 13769 0 Natrialba magadii 1 species 2 0 1109 1 387342 Halopiger 2 genus Halopiger xanaduensis 1 species 387343 1107 0 684 29287 0 genus 1 0 29288 684 Natronococcus occultus 1 species 1 1409 88723 18 0 3 Natrinema genus 1 Natrinema pellirubrum species 0 69525 710 2622230 681 0 no rank 1 0 681 406552 species 1 Natrinema sp. J7-2 1 genus 638 353799 0 Halostagnicola larsenii 1 species 638 353800 0 2 0 203193 1338 1 Halobiforma 2 genus 0 1336 229731 species Halobiforma lacisalsi 1 1 8996 1644055 106 0 Haloferacales 18 order 1 no rank 2678336 749 0 1 halophilic archaeon DL31 species 749 756883 0 8 Haloferacaceae family 4400 1 1644056 15 0 genus 1 0 293431 289 293091 289 0 Haloquadratum walsbyi 1 species 0 11 1 512 60846 genus Halogeometricum 2 0 60847 501 species Halogeometricum borinquense 1 1 3584 2251 0 58 genus 4 Haloferax species 1 Haloferax mediterranei 603 2252 0 Haloferax gibbonsii 1 species 0 1489 35746 1 Haloferax volcanii species 2246 1434 0 27 0 1 3741 1963271 8 Halorubraceae family 56688 2135 1 71 0 Halorubrum 3 genus 0 2247 960 species Halorubrum lacusprofundi 1 0 1104 29284 1 Halorubrum trapanicum species Salinigranum 2 genus 14 0 832 1 1644057 755307 818 0 1 Salinigranum rubrum species Halopenitus 2 genus 1 747 1209988 7 0 1048396 740 0 species Halopenitus persicus 1 42 clade 0 13558 2283794 class 25 Methanobacteria 1 7708 183925 0 5 0 7 1 7703 2158 order 24 Methanobacteriales 0 2178 509 1 family 2179 509 0 1 genus Methanothermus fervidus 1 species 2180 509 0 0 25 1 7187 2159 family Methanobacteriaceae 22 2157 1 2160 4 0 8 Methanobacterium genus 352 868131 0 Methanobacterium paludis 1 species 1 Methanobacterium formicicum species 0 364 2162 118062 373 0 1 Methanobacterium congolense species 232 59277 0 species 1 Methanobacterium subterraneum 0 877455 316 1 Methanobacterium lacus species 0 516 2627676 2 no rank 1 Methanobacterium sp. MB1 species 0 1379702 251 0 265 1911685 1 Methanobacterium sp. MZ-A1 species 4 0 406 1 145260 5 Methanothermobacter genus no rank 1 104 2631116 0 0 866790 104 Methanothermobacter sp. CaT2 1 species 86 145261 0 species Methanothermobacter wolfeii 1 1 Methanothermobacter thermautotrophicus species 83 145262 0 species Methanothermobacter marburgensis 1 0 129 145263 0 707 2316 genus 1 2317 707 0 species Methanosphaera stadtmanae 1 genus Methanobrevibacter 7 0 43 2172 3892 1 681 230361 0 1 Methanobrevibacter millerae species 2 no rank 987 2638681 0 1 Methanobrevibacter sp. YE315 species 1609968 526 0 461 224719 0 species 1 Methanobrevibacter sp. AbM4 654 83816 0 species Methanobrevibacter ruminantium 1 species 1 Methanobrevibacter smithii 2173 817 0 1 Methanobrevibacter olleyae species 294671 710 0 0 50 183939 1 5850 class Methanococci 17 16 Methanococcales order 1 5800 2182 1 0 family 7 Methanococcaceae 0 3 1 3361 2183 Methanococcus 5 genus 2986 1 2184 6 0 species 1 Methanococcus maripaludis 39152 1937 0 Methanococcus vannielii 1 species 2187 324 0 0 42879 331 species 1 Methanococcus aeolicus 0 2188 388 1 Methanococcus voltae species 0 372 155862 1 genus 372 155863 0 species Methanothermococcus okinawensis 1 8 family 0 2438 196117 196118 1 1963 0 5 genus 7 Methanocaldococcus 0 341 83171 species Methanocaldococcus fervens 1 species Methanocaldococcus vulcanius 1 0 406 73913 species 1 Methanocaldococcus jannaschii 2190 296 0 no rank 1 340 2641196 0 644281 340 0 1 Methanocaldococcus sp. FS406-22 species 0 67760 239 1 Methanocaldococcus infernus species 1301915 336 0 Methanocaldococcus bathoardescens 1 species 1 genus 0 196119 475 475 2189 0 species 1 Methanotorris igneus 2 21684800 1 137 0 Bacteria 4507 superkingdom 0 200783 6955 phylum 23 23 Aquificae class 187857 1 6955 18 0 0 2 1 5805 32069 order Aquificales 17 1 no rank 0 90150 565 1 genus 0 412592 565 Thermosulfidibacter takaii 1 species 0 565 412593 0 64898 3148 family 10 1 genus 256 939 0 0 256 940 1 Hydrogenobacter thermophilus species genus 6 Hydrogenobaculum 0 33 168657 2218 1 5 no rank 0 2622382 2185 0 547146 453 species Hydrogenobaculum sp. SN 1 Hydrogenobaculum sp. 3684 1 species 0 453 547143 547144 454 0 1 Hydrogenobaculum sp. HO species 0 453 547145 Hydrogenobaculum sp. SHO 1 species 380749 372 0 1 Hydrogenobaculum sp. Y04AAS1 species 2 genus 415 75905 0 0 136094 188 Thermocrinis albus 1 species 227 75906 0 1 Thermocrinis ruber species 259 2713 0 genus 1 0 259 63363 species Aquifex aeolicus 1 5 Hydrogenothermaceae family 224027 1 2090 7 0 0 3 212790 1 1553 genus Sulfurihydrogenibium 3 no rank 1 0 2619248 926 species Sulfurihydrogenibium sp. YO3AOP1 1 0 436114 926 0 624 309806 Sulfurihydrogenibium azorense 1 species genus 1 0 530 182899 0 309805 530 Persephonella marina 1 species 1132 1 1485951 6 0 Desulfurobacteriales 5 order 558314 1 1126 0 17 family 4 Desulfurobacteriaceae 0 422 171868 1 genus 0 422 228745 1 Thermovibrio ammonificans species 2 0 64159 687 1 Desulfurobacterium 2 genus 64160 685 0 species Desulfurobacterium thermolithotrophum 1 0 2803 74152 phylum 8 641853 504 0 3 class 3 Elusimicrobiales order 2 0 641854 1 504 2 Elusimicrobiaceae family 502 1 641876 3 0 423604 499 0 1 genus Elusimicrobium minutum 1 species 0 423605 499 no rank 1 0 99260 674 674 167965 0 1 uncultured Termite group 1 bacterium species 4 class 0 1625 447830 1 1625 1783344 0 3 order Endomicrobiales 4 3 Endomicrobiaceae family 1 1622 1783343 5 0 genus 2 1617 1408194 0 0 1408204 700 species Candidatus Endomicrobium trichonymphae 1 1 Endomicrobium proavitum species 1408281 917 0 377 clade 4429849 1783270 0 8 phylum 0 8132 142182 0 74 1 8132 219685 class 8 Gemmatimonadetes 0 225 8058 1 219686 order Gemmatimonadales 7 Gemmatimonadaceae 6 family 219687 7833 1 56 0 64 0 173479 3873 1 3 Gemmatimonas genus Gemmatimonas aurantiaca 1 species 0 173480 2015 0 1379270 1794 species Gemmatimonas phototrophica 1 Gemmatirosa 2 genus 3904 1 1706036 24 0 species 1 Gemmatirosa kalamazoonesis 0 3880 861299 phylum 2 0 456828 729 genus 2 Candidatus Cloacimonas 0 5 456826 729 1 456827 724 0 1 Candidatus Cloacimonas acidaminovorans species 0 2837 65842 5 phylum 204430 1 2837 0 15 class Fibrobacteria 5 218872 2822 1 13 0 4 Fibrobacterales order family 3 Fibrobacteraceae 0 4 204431 1 2809 genus 2 Fibrobacter 0 10 1 2805 832 0 2795 833 Fibrobacter succinogenes 1 species 362 clade 68336 4418151 0 1 4395131 976 76 0 Bacteroidetes 333 phylum class Bacteroidia 73 0 173 1 4150115 200643 0 22 1 7452 1970189 order Marinilabiliales 11 0 9 1970190 1 1291 family 3 Salinivirgaceae 1 1282 1970191 0 5 genus 2 Salinivirga 1277 1307839 0 1 Salinivirga cyanobacteriivorans species Prolixibacteraceae 3 family 1 3000 1471398 12 0 Draconibacterium 2 genus 30 0 1471399 2988 1 species Draconibacterium orientale 1 0 2958 1168034 family 1 0 1573805 1663 1663 2060722 0 genus 1 1663 1717717 0 Marinifilaceae bacterium SPP2 1 species 3 Marinilabiliaceae family 558415 1 1476 19 0 genus 2 Alkalitalea 0 1 1193324 1 1457 889453 1456 0 1 Alkalitalea saponilacus species 1168 0 1 4142490 171549 61 Bacteroidales order 1 128181 171552 0 15 family Prevotellaceae 11 128166 1 838 300 0 Prevotella 10 genus 10014 52227 0 Prevotella dentalis 1 species 4550 839 0 species 1 Prevotella ruminicola no rank 1 1806 2638335 0 1 Prevotella sp. oral taxon 299 species 652716 1806 0 28129 4543 0 species Prevotella denticola 1 1177574 3019 0 species 1 Prevotella jejuni 2238 76123 0 species 1 Prevotella enoeca species Prevotella melaninogenica 1 0 28132 3130 Prevotella fusca 1 species 589436 3590 0 94976 28131 0 species Prevotella intermedia 1 family Bacteroidaceae 11 0 60 1 2262011 815 genus 10 Bacteroides 2261951 1 816 0 57559 Bacteroides caccae 1 species 47678 105006 0 species Bacteroides cellulosilyticus 1 0 246787 814377 species Bacteroides ovatus 1 0 28116 255999 species 1 Bacteroides heparinolyticus 0 28113 61583 species Bacteroides fragilis 1 0 249410 817 0 175023 1796613 1 Bacteroides caecimuris species Bacteroides thetaiotaomicron 1 species 0 818 410995 species Bacteroides helcogenes 1 290053 77444 0 28119 54555 0 species Bacteroides zoogleoformans 1 1 96492 2005519 12 0 3 Barnesiellaceae family 397864 1 96480 106 0 2 Barnesiella genus Barnesiella viscericola 1 species 96374 397865 0 1 0 2005520 1 16044 Dysgonamonadaceae 7 family genus Petrimonas 2 0 16 3887 1 307628 1 Petrimonas mucosa species 3871 1642646 0 24 0 9461 1 294702 2 Proteiniphilum genus species 1 Proteiniphilum saccharofermentans 0 9437 1642647 Fermentimonas 2 genus 1784836 1 2695 4 0 species Fermentimonas caenicola 1 0 1562970 2691 5 Rikenellaceae family 27 0 1 141400 171550 Mucinivorans 2 genus 4 0 1 2630 1611681 species Mucinivorans hirudinis 1 0 1433126 2626 1 138743 239759 0 60 genus Alistipes 2 0 214856 138683 species 1 Alistipes finegoldii 1580 185291 0 no rank 1 1400053 1580 0 species 1 Bacteroidales bacterium CF 3 Odoribacteraceae family 83802 1 1853231 4 0 283168 1 83798 10 0 Odoribacter 2 genus 83788 28118 0 species Odoribacter splanchnicus 1 171551 1 7892 83 0 4 Porphyromonadaceae family 1 7809 836 15 0 3 Porphyromonas genus 1 Porphyromonas gingivalis species 0 837 5744 0 28123 2050 species Porphyromonas asaccharolytica 1 family Tannerellaceae 7 0 142 2005525 1 646314 203 0 375288 1 625358 3 Parabacteroides genus 823 252627 0 1 Parabacteroides distasonis species 1 no rank 2649774 372528 0 0 372528 2025876 1 Parabacteroides sp. CT06 species 0 23 1 20814 195950 genus Tannerella 3 0 7824 2620507 no rank 1 7824 712710 0 species Tannerella sp. oral taxon HOT-286 1 0 28112 12967 Tannerella forsythia 1 species 1 2570 2005523 0 6 family Paludibacteraceae 3 0 68 346096 1 2564 genus Paludibacter 2 species Paludibacter propionicigenes 1 2496 185300 0 0 333046 755036 5 no rank 0 70 511434 1 1612 genus Candidatus Azobacteroides 2 Candidatus Azobacteroides pseudotrichonymphae 1 species 0 511435 1542 3 genus 909656 753424 0 0 511143 821 species Bacteroides vulgatus 1 193263 357276 0 species Bacteroides dorei 1 Bacteroides salanitronis 1 species 0 376805 49018 53 0 1 2402 1937959 8 Saprospiria class 0 11 1 2349 1936988 order Saprospirales 7 1 0 1 612 89374 Saprospiraceae 3 family Saprospira 2 genus 611 1 1007 1 0 1008 610 0 species Saprospira grandis 1 Haliscomenobacteraceae 3 family 1937961 1726 1 3 0 genus Haliscomenobacter 2 1 1723 2349 0 2 1721 2350 0 species Haliscomenobacter hydrossis 1 Cytophagia 59 class 224 0 1 64903 768503 0 540 768507 1 64679 order Cytophagales 58 89373 1 14827 82 0 Cytophagaceae 17 family 0 13 1 912 319458 genus 2 Leadbetterella 1 Leadbetterella byssophila species 899 316068 0 Dyadobacter 2 genus 16 0 120831 2593 1 species 1 Dyadobacter fermentans 0 2577 94254 861914 1 1308 0 7 genus 2 Fibrella no rank 1 0 2620963 1301 Fibrella sp. ES10-3-2-2 1 species 0 1834519 1301 107 7172 1 36 0 Spirosoma 6 genus 0 1677 564064 species 1 Spirosoma rigui Spirosoma sp. HA7 1 species 0 1203 2057025 1 Spirosoma aerolatum species 1211326 1157 0 1413 1379870 0 Spirosoma radiotolerans 1 species species 1 Spirosoma montaniterrae 1178516 1686 0 genus Runella 2 0 10 105 1493 1 0 106 1483 Runella slithyformis 1 species Cytophaga 2 genus 9 0 978 1267 1 1258 985 0 Cytophaga hutchinsonii 1 species 8 0 1 1485 1937968 Bernardetiaceae 3 family genus 2 Bernardetia 0 1 1 1477 1937972 1476 999 0 Bernardetia litoralis 1 species family Flammeovirgaceae 4 0 26 1 3356 200667 no rank 1 340671 1851 0 1 Flammeovirgaceae bacterium 311 species 1851 1257021 0 genus Flammeovirga 2 0 2 59739 1 1479 1 no rank 0 2637820 1477 Flammeovirga sp. MY04 1 species 0 1477 1191459 family Cyclobacteriaceae 10 4620 1 563798 0 34 0 1 390846 1157 1 genus Echinicola 2 1156 390884 0 Echinicola vietnamensis 1 species 68288 1 1648 0 12 genus 3 Cyclobacterium 104 767 0 species Cyclobacterium marinum 1 0 869 320787 species 1 Cyclobacterium amurskyense 2 Belliella genus 3 0 232244 1 823 species 1 Belliella baltica 0 820 232259 genus 2 Algoriphagus 246875 958 1 0 3 species Algoriphagus sp. M8-2 1 1727163 955 0 2 family 0 1853234 1639 59740 1639 1 10 0 Persicobacter 2 genus 0 2664020 1629 1 no rank species 1 Persicobacter sp. JZB09 1085624 1629 0 0 1083 2762301 family 2 genus 2 Marivirga 0 19 869806 1 1083 0 1006 1064 species 1 Marivirga tractuosa 0 154 1 36506 1853232 family Hymenobacteraceae 16 25 0 323449 3689 1 Pontibacter 3 genus 1 Pontibacter akesuensis species 2072 388950 0 1 Pontibacter korlensis species 0 1592 400092 genus Rufibacter 4 0 21 4653 1 1379908 species 1 Rufibacter tibetensis 512763 1500 0 3132 2639626 0 2 no rank 0 1379910 1859 1 Rufibacter sp. DG31D species 0 1273 1379909 1 Rufibacter sp. DG15C species 0 248 28010 1 89966 genus 8 Hymenobacter 0 19513 2615202 no rank 5 0 5199 1356852 Hymenobacter sp. APR13 1 species 1 Hymenobacter sp. DG25B species 2967 1385664 0 species Hymenobacter sp. PAMC 26628 1 0 1484118 5031 1 Hymenobacter sp. PAMC 26554 species 0 4036 1484116 Hymenobacter sp. DG25A 1 species 2280 1385663 0 Hymenobacter sedentarius 1 species 1411621 4446 0 3803 1446467 0 Hymenobacter swuensis 1 species family 3 Amoebophilaceae 623 1 1501348 0 3 genus 1 395 281119 0 0 281120 395 Candidatus Amoebophilus asiaticus 1 species 225 273135 0 genus 1 1 no rank 2641185 225 0 species Cardinium endosymbiont of Encarsia pergandiella 1 249402 225 0 class 145 Flavobacteriia 1 132229 117743 0 86 order 144 Flavobacteriales 0 120 200644 1 132143 1296 0 1 81328 49546 101 Flavobacteriaceae family 52959 1 5531 0 5 genus Polaribacter 6 0 196858 3086 no rank 3 313598 919 0 1 Polaribacter sp. MED152 species 1 Polaribacter sp. BM10 species 1058 1529069 0 species Polaribacter sp. ALD11 1 2058137 1109 0 996801 1224 0 1 Polaribacter reichenbachii species 1216 1774273 0 Polaribacter vadi 1 species 2 Aequorivita genus 1 0 153265 1 675 101385 674 0 species 1 Aequorivita sublithincola 1 genus 336276 854 0 0 2615019 854 no rank 1 species 1 Olleya sp. Bg11-27 2058135 854 0 899 112040 0 1 genus 0 63186 899 1 Zobellia galactanivorans species 0 393005 906 genus 1 906 2069432 0 species Tamlana sp. UJ94 1 0 1 2772 1 291183 genus 4 Lacinutrix 0 1817 2647285 no rank 2 0 978 983544 Lacinutrix sp. 5H-3-7-4 1 species species 1 Lacinutrix sp. Bg11-31 0 2057808 839 1 Lacinutrix venerupis species 1486034 954 0 2 no rank 0 2132 61432 0 1092 531844 Flavobacteriaceae bacterium 3519-10 1 species 1 Flavobacteriaceae bacterium UJ101 species 0 1150389 1040 1 genus 0 389486 568 0 568 2648869 no rank 1 Sediminicola sp. YIK13 1 species 1453352 568 0 3444 1 104264 3 0 Cellulophaga 4 genus Cellulophaga baltica 1 species 76594 1076 0 1021 59600 0 species Cellulophaga algicola 1 0 1344 979 Cellulophaga lytica 1 species 3 Muricauda genus 1 1751 111500 2 0 980 111501 0 species 1 Muricauda ruestringensis 0 769 516051 1 Muricauda lutaonensis species 1214 1209327 0 genus 1 Flavivirga eckloniae 1 species 1803846 1214 0 1020 1518147 0 genus 1 species Wenyingzhuangia fucanilytica 1 0 1020 1790137 9 Flavobacterium genus 33 0 237 1 10670 species Flavobacterium indicum 1 312277 844 0 3180 986 0 Flavobacterium johnsoniae 1 species 0 96345 871 1 Flavobacterium psychrophilum species 1455 1492737 0 Flavobacterium gilvum 1 species species 1 Flavobacterium columnare 1879 996 0 784 55197 0 species 1 Flavobacterium branchiophilum 0 1306519 1119 1 Flavobacterium commune species Flavobacterium crassostreae 1 species 505 1763534 0 4 0 252306 1 1333 Robiginitalea 2 genus 1 Robiginitalea biformata species 1329 252307 0 1 genus 0 358023 1074 species 1 Lutibacter profundi 0 1074 1622118 Nonlabens 5 genus 7 0 2533 1 363408 species Nonlabens sediminis 1 0 521 319236 Nonlabens dokdonensis 1 species 0 328515 739 0 1266 2615035 2 no rank 1 Nonlabens sp. MIC269 species 0 488 1476901 2058134 778 0 species 1 Nonlabens sp. MB-3u-79 1 genus 739 216431 0 0 739 313588 1 Croceibacter atlanticus species 0 19 1 906 143222 genus 2 Salegentibacter 1 no rank 0 2633436 887 887 1729720 0 species 1 Salegentibacter sp. T436 Gramella 5 genus 1 3697 292691 38 0 0 1486245 1089 Gramella flava 1 species 1 Gramella sp. SH35 species 0 904 2126553 411153 1012 0 species 1 Gramella forsetii 654 1913577 0 1 Gramella sp. LPB0144 species 1 1943 326319 0 4 genus 4 Dokdonia 1378 2615033 0 2 no rank 0 584 313590 species 1 Dokdonia sp. MED134 1 Dokdonia sp. 4H-3-7-5 species 794 983548 0 species Dokdonia donghaensis 1 326320 561 0 6344 1 76831 74 0 Myroides 5 genus 1 Myroides odoratimimus species 0 3404 76832 0 2642485 1985 no rank 2 1583100 979 0 species Myroides sp. A21 1 species Myroides sp. ZB35 1 0 1006 1458492 1 Myroides profundi species 881 480520 0 286104 2124 1 0 1 genus 3 Winogradskyella 2615021 2123 0 no rank 2 species 1 Winogradskyella sp. PG-2 0 754409 966 species Winogradskyella sp. J14-2 1 1936080 1157 0 genus 1 831 1176327 0 no rank 1 0 2636237 831 Aureitalea sp. RR4-38 1 species 831 2094025 0 0 1204360 743 genus 1 743 762954 0 species Siansivirga zeaxanthinifaciens 1 genus 1 0 1023 1649495 1 no rank 2622645 1023 0 0 1936081 1023 Seonamhaeicola sp. S2-3 1 species 64 0 1 11635 1016 15 Capnocytophaga genus 1 Capnocytophaga sputigena species 1591 1019 0 0 45243 775 Capnocytophaga haemolytica 1 species Capnocytophaga stomatis 1 species 898 1848904 0 Capnocytophaga canimorsus 1 species 28188 1028 0 6 no rank 2640652 4265 0 species 1 Capnocytophaga sp. H2931 589 1945657 0 0 800 209053 species Capnocytophaga sp. ChDC OS43 1 species Capnocytophaga sp. oral taxon 323 1 0 1705617 745 1316596 762 0 Capnocytophaga sp. oral taxon 878 1 species 0 557 1945658 1 Capnocytophaga sp. H4358 species 812 1316593 0 1 Capnocytophaga sp. oral taxon 864 species 0 820 1018 species 1 Capnocytophaga ochracea 826 327575 0 Capnocytophaga leadbetteri 1 species 744 28189 0 1 Capnocytophaga cynodegmi species 0 1017 624 species Capnocytophaga gingivalis 1 1009 261827 0 1 genus 0 1009 1736674 species 1 Algibacter alginicilyticus genus 1 0 871 178469 0 871 616991 1 Arenibacter algicola species 2 genus 856 225842 0 856 2644710 0 2 no rank 1336794 499 0 species 1 Formosa sp. Hel1_33_131 0 357 1336795 1 Formosa sp. Hel3_A1_48 species 0 2 104267 1 3794 genus Tenacibaculum 5 107401 667 0 Tenacibaculum maritimum 1 species 0 1231 584609 1 Tenacibaculum jejuense species species 1 Tenacibaculum dicentrarchi 669041 917 0 species 1 Tenacibaculum todarodis 977 1850252 0 0 633 83612 1 genus species 1 Psychroflexus torquis 0 57029 633 1 genus 0 2700084 1221 Lutibacter sp. LPB0138 1 species 1850246 1221 0 1 3222 252356 0 9 genus Maribacter 5 species 1 Maribacter cobaltidurans 0 1178778 736 no rank 3 2615042 2477 0 species Maribacter sp. HTCC2170 1 313603 740 0 885 1836467 0 species 1 Maribacter sp. T28 species Maribacter sp. 1_2014MBL_MicDiv 1 1644130 852 0 Zunongwangia 2 genus 1 1065 417127 6 0 Zunongwangia profunda 1 species 0 398743 1059 2 246874 0 family 1 Cryomorphaceae family 21 0 2762318 45033 Elizabethkingia 6 genus 113 0 308865 1 8879 238 1586 0 species Elizabethkingia meningoseptica 1 1115 1756150 0 species 1 Elizabethkingia genomosp. 4 species 1 Elizabethkingia genomosp. 3 1140 1756149 0 species 1 Elizabethkingia anophelis 1117645 3143 0 1782 172045 0 Elizabethkingia miricola 1 species 1 genus 0 1739 34084 Riemerella anatipestifer 1 species 0 1739 34085 15571 2782232 0 10 no rank 1 genus 2285 2782228 0 species Chryseobacterium taklimakanense 1 0 2285 536441 genus Chryseobacterium 9 0 87 1 13286 59732 species Chryseobacterium camelliae 1 0 1265445 1513 1 Chryseobacterium glaciei species 1685010 1341 0 0 2593645 4099 3 no rank 1721091 1162 0 1 Chryseobacterium sp. IHB B 17019 species species 1 Chryseobacterium sp. T16E-39 2015076 1776 0 1161 878220 0 1 Chryseobacterium sp. StRB126 species species 1 Chryseobacterium piperi 0 1221 558152 1324352 2335 0 1 Chryseobacterium gallinarum species species Chryseobacterium indologenes 1 0 2690 253 genus Ornithobacterium 2 1 18293 28250 0 88 1 Ornithobacterium rhinotracheale species 28251 18205 0 0 6 1 551 1013 genus Weeksella 2 0 1014 545 species 1 Weeksella virosa family 2 780 1333713 0 Owenweeksia 2 genus 2 0 267986 780 1 species Owenweeksia hongkongensis 1 253245 778 0 1853230 967 0 family 2 332102 967 1 18 0 2 Fluviicola genus 0 191579 949 Fluviicola taffensis 1 species 0 313602 619 3 no rank 2 Candidatus Sulcia genus 9 0 467 1 336809 336810 458 0 1 Candidatus Sulcia muelleri species 152 1940138 0 genus 1 152 1415657 0 1 Candidatus Walczuchella monophlebidarum species 10 Blattabacteriaceae family 1 2905 39782 3 0 Blattabacterium 9 genus 34098 1 2902 129 0 Blattabacterium cuenoti 1 species 393 1653831 0 0 1888 2647581 6 no rank 0 271 367488 1 Blattabacterium sp. (Periplaneta americana) species 393 1316444 0 1 Blattabacterium sp. (Nauphoeta cinerea) species 1 Blattabacterium sp. (Blatta orientalis) species 0 211 367806 39768 258 0 species 1 Blattabacterium sp. (Mastotermes darwiniensis) 0 1186051 386 1 Blattabacterium sp. (Blaberus giganteus) species species Blattabacterium sp. (Blattella germanica) 1 624186 369 0 1 Blattabacterium punctulatus species 164514 492 0 5 0 1755828 1 389 Ichthyobacteriaceae 3 family 384 1 1755829 0 2 genus 2 Ichthyobacterium 382 242600 0 Ichthyobacterium seriolicida 1 species 12361 1 1100069 0 306 order Bacteroidetes Order II. Incertae sedis 7 1 12055 563843 0 120 family 6 Rhodothermaceae 4678 1196022 0 no rank 1 species Rhodothermaceae bacterium RA 1 1779382 4678 0 Rhodothermus 2 genus 29548 1 5595 66 0 29549 5529 0 Rhodothermus marinus 1 species Salinibacter 2 genus 19 0 146918 1662 1 0 1643 146919 1 Salinibacter ruber species 24 Sphingobacteriia class 20970 1 117747 15 0 23 Sphingobacteriales order 200666 1 20955 43 0 22 Sphingobacteriaceae family 20912 1 84566 133 0 Sphingobacterium 6 genus 28453 1 6002 41 0 1 Sphingobacterium mizutaii species 892 1010 0 4 no rank 0 2609468 5069 Sphingobacterium sp. B29 1 species 0 1346 1933220 Sphingobacterium sp. ML3W 1 species 0 1213 1538644 species Sphingobacterium sp. 21 1 0 1206 743722 2003121 1304 0 1 Sphingobacterium sp. G1-14 species genus 2 Solitalea 0 3 929509 1204 1 995 1201 0 species 1 Solitalea canadensis 6 Pedobacter genus 18 0 6869 1 84567 363852 1242 0 1 Pedobacter ginsengisoli species 1282 2628915 0 1 no rank 1 Pedobacter sp. PACM 27299 species 1727164 1282 0 0 984 1295 species 1 Pedobacter heparinus 1 Pedobacter cryoconitis species 188932 1762 0 0 430522 1270 1 Pedobacter steynii species 1 1362 1649482 0 2 genus Pseudopedobacter 2 species Pseudopedobacter saltans 1 0 1360 151895 Mucilaginibacter 4 genus 21 0 423349 1 3930 1644 1550579 0 species Mucilaginibacter gotjawali 1 0 1290 2617802 1 no rank species Mucilaginibacter sp. PAMC 26640 1 1290 1300914 0 0 975 1234841 species 1 Mucilaginibacter sp. BJC16-A31 no rank 1 84568 1412 0 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 0 1986952 1412 class Chitinophagia 16 12075 1 1853228 0 8 order Chitinophagales 15 0 59 1853229 1 12067 1 12008 563835 0 66 family Chitinophagaceae 14 genus 1 0 398041 937 1 Flavisolibacter tropicus species 0 937 1492898 Filimonas 2 genus 12 0 1581 1 649460 0 1569 477680 Filimonas lacunae 1 species genus 3 Niabella 1 2927 379899 0 40 1388 446683 0 Niabella soli 1 species species 1 Niabella ginsenosidivorans 1499 1176587 0 1 2168 354354 2 0 2 Niastella genus 1 Niastella koreensis species 2166 354356 0 genus 3 Chitinophaga 79328 3227 1 0 8 1 Chitinophagaceae bacterium 13 species 2029983 1056 0 species 1 Chitinophaga pinensis 2163 79329 0 2 Arachidicoccus genus 1769012 1102 1 2 0 2636138 1100 0 no rank 1 1850526 1100 0 species 1 Arachidicoccus sp. BS20 0 1134404 2387 phylum 7 class 7 Ignavibacteria 0 3 795747 1 2387 1 2384 795748 4 0 6 Ignavibacteriales order 1 879 1334117 0 1 family 3 Melioribacteraceae 0 4 1 878 1134403 genus 2 Melioribacter species 1 Melioribacter roseus 1134405 874 0 1501 795749 0 family 2 1 1501 795750 1 0 Ignavibacterium 2 genus species Ignavibacterium album 1 591197 1500 0 22 phylum 0 20633 1090 0 145 191410 20633 1 class Chlorobia 22 1 20488 191411 0 203 order Chlorobiales 21 89 0 1 20285 191412 20 Chlorobiaceae family 274493 7088 0 8 no rank 1 2750 1099 15 0 Pelodictyon 3 genus 0 1905 1100 1 Pelodictyon luteolum species 0 830 34090 Pelodictyon phaeoclathratiforme 1 species 19 0 1091 4338 1 5 Chlorobium genus 0 1906 1096 species 1 Chlorobium phaeobacteroides 997 1094 0 species 1 Chlorobium phaeovibrioides 432 337090 0 species Chlorobium chlorochromatii 1 species 1 Chlorobium limicola 0 1092 984 genus 4 Chlorobaculum 0 97 8103 1 256319 0 2361 274539 Chlorobaculum parvum 1 species 3246 274537 0 species Chlorobaculum limnaeum 1 0 1097 2399 species 1 Chlorobaculum tepidum 973 1 100715 4 0 Chloroherpeton 2 genus 0 969 100716 species Chloroherpeton thalassium 1 14 0 4032 1 1101 Prosthecochloris 5 genus species Prosthecochloris aestuarii 1 0 1102 784 2632826 3234 0 3 no rank 793 1868325 0 species Prosthecochloris sp. CIB 2401 1 1974213 958 0 species Prosthecochloris sp. HL-130-GSB 1 1483 281093 0 1 Prosthecochloris sp. GSB1 species phylum 2049 Proteobacteria 0 1466 1 3556421 1224 0 1 1807140 1 4646 class 7 Acidithiobacillia order 6 Acidithiobacillales 1 4645 225057 0 38 Acidithiobacillaceae 5 family 79 0 225058 1 4607 119977 1 4528 0 44 genus Acidithiobacillus 4 0 1499 160808 Acidithiobacillus ferrivorans 1 species 0 33059 1422 species Acidithiobacillus caldus 1 species Acidithiobacillus ferrooxidans 1 0 1563 920 28211 770315 1 3121 0 Alphaproteobacteria 566 class Magnetococcales 4 order 11 0 1 1139 1191478 family Magnetococcaceae 3 0 6 1 1128 1191479 genus 2 Magnetococcus 0 3 1122 1 162171 Magnetococcus marinus 1 species 1119 1124597 0 1 1083 1921002 19 0 Holosporales 8 order 1 280 1777752 2 0 3 Candidatus Paracaedibacteraceae family genus Candidatus Paracaedibacter 2 278 1 1521255 0 1 277 91604 0 1 Candidatus Paracaedibacter acanthamoebae species 0 4 1 344 2100208 family 3 Caedimonadaceae 1 0 1509243 1 340 2 Candidatus Nucleicultrix genus 1509244 339 0 1 Candidatus Nucleicultrix amoebiphila species 44746 440 0 family 1 440 204454 0 no rank 1 0 440 86106 1 endosymbiont of Acanthamoeba sp. UWC8 species order Sphingomonadales 82 1 120335 204457 0 821 family 22 Erythrobacteraceae 24577 1 335929 0 500 no rank 6 0 7260 2800788 1 3336 1111 103 0 Porphyrobacter 3 genus 0 3233 2683265 2 no rank 1896196 1549 0 Porphyrobacter sp. LM 6 1 species 2023229 1684 0 Porphyrobacter HT-58-2 1 species 0 140 1041 3924 1 genus 3 Erythrobacter 1 Porphyrobacter neustonensis species 0 1112 1591 Erythrobacter litoralis 1 species 0 39960 2193 3 Croceicoccus genus 83 0 1295327 3675 1 2106 450378 0 species Croceicoccus marinus 1 Croceicoccus naphthovorans 1 species 1348774 1486 0 255 0 1 3388 361177 Altererythrobacter 4 genus species 1 Altererythrobacter atlanticus 0 1449 1267766 0 667 476157 Altererythrobacter ishigakiensis 1 species Altererythrobacter epoxidivorans 1 species 0 1017 361183 genus 2 2800681 2226 0 Erythrobacter gangjinensis 1 species 0 1417 502682 0 1648404 809 species 1 Erythrobacter atlanticus 2800682 1865 0 genus 1 Altererythrobacter namhicola 1 species 645517 1865 0 0 2800686 2187 genus 2 species 1 Altererythrobacter mangrovi 1982042 868 0 692370 1319 0 1 Altererythrobacter dongtanensis species 2 genus 1855416 2364 0 species 1 Erythrobacter flavus 192812 1151 0 1 Erythrobacter seohaensis species 0 266951 1213 1112 2800685 0 1 genus 543877 1112 0 1 Altererythrobacter marensis species 0 1327 41297 1 94937 family 59 Sphingomonadaceae Sphingomonas 15 genus 13687 30369 1 634 0 2748 397260 0 1 Sphingomonas sanxanigenens species 1986 1560345 0 1 Sphingomonas panacis species no rank 6 196159 11705 0 0 1857 1961362 Sphingomonas sp. NIC1 1 species species 1 Sphingomonas sp. LM7 1938607 2079 0 1390395 2489 0 species Sphingomonas sp. LK11 1 2411 745310 0 species Sphingomonas sp. MM-1 1 0 1229 1030157 1 Sphingomonas sp. KC8 species 0 1640 1327635 1 Sphingomonas sp. Cra20 species species 1 Sphingomonas koreensis 0 2219 93064 2109 1549858 0 species 1 Sphingomonas taxi 1741 152682 0 1 Sphingomonas melonis species Sphingomonas hengshuiensis 1 species 1898 1609977 0 Sphingomonas wittichii 2 species 2584 0 1 5329 160791 strain Sphingomonas sp. DC-6 1 2745 1283312 0 2685927 1554 0 genus 1 0 1921510 1554 1 Sphingomonas sp. JJ-A5 species 1649486 1 2090 61 0 2 Rhizorhabdus genus 2029 1850238 0 species Rhizorhabdus dicambivorans 1 2 Blastomonas genus 21 0 150203 1643 1 no rank 1 0 2626550 1622 Blastomonas sp. RAC04 1 species 1842535 1622 0 0 319 1 14480 165697 genus Sphingopyxis 10 117207 1575 0 1 Sphingopyxis alaskensis species 0 33052 1405 1 Sphingopyxis terrae species species Sphingopyxis fribergensis 1 1515612 1529 0 1 Sphingopyxis granuli species 0 267128 1537 5092 2614943 0 no rank 4 species Sphingopyxis sp. LPB0140 1 1913578 585 0 species 1 Sphingopyxis sp. MG 1866325 1437 0 0 292913 1196 1 Sphingopyxis sp. 113P3 species 1 Sphingopyxis sp. QXT-31 species 1357916 1874 0 3023 33050 0 species 1 Sphingopyxis macrogoltabida 2709685 855 0 genus 1 species 1 Sphingorhabdus flavimaris 0 855 266812 1705 1 72173 16 0 Citromicrobium 2 genus 0 1689 2630544 no rank 1 0 1689 1634516 Citromicrobium sp. JL477 1 species 5 Novosphingobium genus 165696 1 9193 164 0 48935 1683 0 Novosphingobium aromaticivorans 1 species 205844 2046 0 species Novosphingobium pentaromativorans 1 species Novosphingobium resinovorum 1 0 158500 2778 0 2522 2644732 no rank 1 0 2522 702113 1 Novosphingobium sp. PP1Y species 2 Zymomonas genus 541 1813 1 276 0 1 Zymomonas mobilis species 1537 542 0 0 599 165695 1 27763 genus 15 Sphingobium 6 no rank 0 11349 2611147 0 1716 407020 Sphingobium sp. MI1205 1 species 627192 1646 0 species Sphingobium sp. SYK-6 1 0 1665 1843368 species 1 Sphingobium sp. RAC03 species 1 Sphingobium sp. YBL2 0 484429 2619 1500 1855519 0 1 Sphingobium sp. EP60837 species Sphingobium sp. TKS 1 species 2203 1315974 0 1332080 1508 0 species 1 Sphingobium baderi species Sphingobium indicum 1 0 2294 332055 species 1 Sphingobium herbicidovorans 1240 76947 0 0 332056 1778 1 Sphingobium japonicum species Sphingobium yanoikuyae 1 species 0 13690 2250 0 46429 2493 1 Sphingobium chlorophenolicum species 120107 2151 0 1 Sphingobium cloacae species species 1 Sphingobium hydrophobicum 1673076 2101 0 1434046 1 2145 0 34 genus 3 Sphingorhabdus 2614947 2111 0 no rank 2 0 1187 2077182 1 Sphingorhabdus sp. YGSMI21 species species 1 Sphingorhabdus sp. M41 0 924 1806885 order 8 Pelagibacterales 54526 2329 1 0 1 0 2045213 446 genus 1 0 446 1925548 1 Candidatus Fonsibacter ubiquis species family 6 Pelagibacteraceae 0 8 1 1882 1655514 no rank 2 1655516 987 0 species 1 alpha proteobacterium HIMB59 744985 570 0 alpha proteobacterium HIMB5 1 species 0 417 859653 3 0 1 887 198251 Candidatus Pelagibacter 3 genus 0 2647897 329 1 no rank Candidatus Pelagibacter sp. IMCC9063 1 species 0 1002672 329 0 555 198252 species 1 Candidatus Pelagibacter ubique order Rhizobiales 212 356 1 329773 0 3497 family 6 Methylocystaceae 1 4634 31993 0 44 102 0 1 2665 133 Methylocystis 3 genus 0 655015 1449 1 Methylocystis bryophila species 0 1114 2625913 no rank 1 species 1 Methylocystis sp. SC2 1114 187303 0 0 64 1 1925 425 genus 2 Methylosinus species 1 Methylosinus trichosporium 1861 426 0 26 Bradyrhizobiaceae family 41294 1 65206 781 0 genus 11 Bradyrhizobium 0 1031 1 32550 374 1 Bradyrhizobium diazoefficiens species 4720 1355477 0 0 375 4557 species Bradyrhizobium japonicum 1 2253 1274631 0 species Bradyrhizobium icense 1 0 3187 44255 species 1 Bradyrhizobium oligotrophicum 6 no rank 0 16802 2631580 species 1 Bradyrhizobium sp. ORS 285 3075 115808 0 376 2671 0 species Bradyrhizobium sp. 1 Bradyrhizobium sp. ORS 278 1 species 2633 114615 0 288000 3197 0 1 Bradyrhizobium sp. BTAi1 species Bradyrhizobium sp. SK17 1 species 2552 2057741 0 Bradyrhizobium sp. CCGE-LA001 1 species 0 2674 1223566 5 Bosea genus 1 11025 85413 164 0 0 8419 2653178 no rank 3 0 2595 2015316 1 Bosea sp. AS-1 species 1792307 2615 0 Bosea sp. PAMC 26642 1 species 1842539 3209 0 species Bosea sp. RAC05 1 1 Bosea vaviloviae species 0 1526658 2442 2 Rhodopseudomonas genus 176 0 1073 15195 1 1076 15019 0 species Rhodopseudomonas palustris 1 Variibacter 2 genus 1649510 1 1366 28 0 Variibacter gotjawalensis 1 species 1333996 1338 0 Nitrobacter 3 genus 1 2591 911 34 0 0 1260 912 species Nitrobacter hamburgensis 1 species 1 Nitrobacter winogradskyi 913 1297 0 40136 1698 1 0 27 genus 2 Oligotropha 1671 40137 0 1 Oligotropha carboxidovorans species 1 107125 82115 0 1069 family 55 Rhizobiaceae 78466 227290 0 no rank 36 genus Rhizobium 27 1 54779 379 0 3349 0 2613769 23956 no rank 21 Rhizobium sp. IE4771 1 species 0 1459 1301032 327 2020313 0 Rhizobium sp. TAL182 1 species Rhizobium sp. ACO-34A 1 species 1571470 2219 0 Rhizobium sp. Y9 1 species 0 2342 1914541 2352 1869170 0 species 1 Rhizobium sp. S41 0 1981173 1204 Rhizobium sp. NXC14 1 species species 1 Rhizobium sp. N741 1703967 7 0 species 1 Rhizobium sp. NT-26 0 1415 1125847 0 4 1703968 1 Rhizobium sp. N871 species 0 10 1703962 species Rhizobium sp. N1341 1 1703969 1673 0 species 1 Rhizobium sp. N324 0 28 1703964 Rhizobium sp. N621 1 species species Rhizobium sp. N6212 1 28 1703965 0 1 Rhizobium sp. NXC24 species 2048897 2022 0 Rhizobium sp. CIAT894 1 species 0 2019 2020312 species Rhizobium sp. IRBG74 1 2275 424182 0 0 213 1703966 species Rhizobium sp. N731 1 2701 2028343 0 species Rhizobium sp. 10195 1 1439 2020311 0 species 1 Rhizobium sp. Kim5 species 1 Rhizobium sp. N113 1703960 6 0 1 Rhizobium sp. N1314 species 0 213 1703961 3973 396 0 species Rhizobium phaseoli 1 398 2522 0 species Rhizobium tropici 1 29449 5998 0 1 Rhizobium etli species Rhizobium gallicum 1 species 0 2754 56730 384 12227 0 Rhizobium leguminosarum 1 species 19711 1 357 313 0 7 Agrobacterium genus species group 2 1183400 10738 0 species 1 Agrobacterium tumefaciens 8368 358 0 2370 1176649 0 species 1 Agrobacterium fabrum 1 Agrobacterium rhizogenes species 0 3226 359 2 no rank 0 3531 2632611 0 861208 2040 Agrobacterium sp. H13-3 1 species species 1 Agrobacterium sp. RAC06 0 1491 1842536 Agrobacterium vitis 1 species 1903 373 0 genus 2 Neorhizobium 0 20 1 3976 1525371 0 3956 399 species 1 Neorhizobium galegae 3436 1 323620 19 0 Shinella 2 genus 3417 2643062 0 no rank 1 0 3417 879274 Shinella sp. HZN7 1 species 227292 22697 0 10 no rank Ensifer 3 genus 26 0 1 4229 106591 106592 2308 0 species Ensifer adhaerens 1 species Ensifer sojae 1 0 716925 1895 Sinorhizobium 7 genus 1 18468 28105 454 0 4601 663276 0 species group 1 380 4601 0 Sinorhizobium fredii 1 species 0 4673 2613772 2 no rank species Sinorhizobium sp. RAC02 1 0 2864 1842534 794846 1809 0 species Sinorhizobium sp. CCBAU 05631 1 194963 2541 0 1 Sinorhizobium americanum species 1 Sinorhizobium meliloti species 0 382 4464 Sinorhizobium medicae 1 species 0 110321 1735 1 1457 34019 0 13 genus 6 Liberibacter species 1 Liberibacter crescens 0 1273132 417 Candidatus Liberibacter solanacearum 1 species 0 272 556287 species 1 Candidatus Liberibacter asiaticus 0 34021 144 34020 339 0 Candidatus Liberibacter africanus 1 species 0 272 309868 1 Candidatus Liberibacter americanus species 0 4 119043 1 1270 family 3 Rhodobiaceae 43 0 256616 1 1266 Parvibaculum 2 genus species Parvibaculum lavamentivorans 1 1223 256618 0 0 90 11731 1 255475 family Aurantimonadaceae 7 0 175 1 9207 293088 genus Martelella 4 species Martelella endophytica 1 0 1486262 2959 Martelella mediterranea 1 species 0 293089 3061 1 no rank 3012 2629616 0 3012 686597 0 1 Martelella sp. AD-3 species genus 2 Aureimonas 0 43 2434 1 414371 0 2615206 2391 no rank 1 species Aureimonas sp. AU20 1 2391 1349819 0 49 0 1 12919 118882 20 Brucellaceae family genus Brucella 14 0 2408 234 6637 1 0 62 444163 1 Brucella microti species species 1 Brucella ovis 31 236 0 species Brucella canis 1 36855 326 0 1 Brucella suis species 93 29461 0 717 981386 0 species Brucella vulpis 1 235 271 0 species 1 Brucella abortus 0 120577 426 species Brucella ceti 1 no rank 4 0 1788 2632610 0 1891098 68 Brucella sp. 2002734562 1 species Brucella sp. 141012304 1 species 1885919 700 0 1844051 573 0 Brucella sp. 09RB8910 1 species species 1 Brucella sp. 09RB8471 447 1149952 0 species Brucella melitensis 1 111 29459 0 species Brucella pinnipedialis 1 0 120576 404 55 0 6233 1 528 5 Ochrobactrum genus species 1 Ochrobactrum pituitosum 0 1402 571256 species Ochrobactrum anthropi 1 529 1741 0 271865 1600 0 species 1 Ochrobactrum sp. A44 Ochrobactrum pseudogrignonense 1 species 419475 1435 0 35 0 1 4540 2036754 Chelatococcaceae 4 family Chelatococcus 3 genus 28209 4505 1 248 0 0 444444 1669 1 Chelatococcus daeguensis species 2588 2638111 0 1 no rank 2588 1702325 0 species Chelatococcus sp. CO-6 1 1 11245 335928 196 0 7 Xanthobacteraceae family 0 83 1 3779 279 genus Xanthobacter 2 280 3696 0 species Xanthobacter autotrophicus 1 6 1 4075 84 0 Azorhizobium 2 genus 0 3991 7 Azorhizobium caulinodans 1 species 86 0 1 3195 152053 2 Starkeya genus species Starkeya novella 1 0 3109 921 family Hyphomicrobiaceae 19 1 22447 45401 0 284 Filomicrobium 2 genus 1 705 119044 11 0 0 694 1608628 species Candidatus Filomicrobium marinum 1 79 0 1 2924 29407 Rhodoplanes 2 genus 2619116 2845 0 no rank 1 species Rhodoplanes sp. Z2-YC6860 1 0 2845 674703 genus 2 Blastochloris 0 61 1 2531 59282 0 1079 2470 1 Blastochloris viridis species 1 6296 81 0 55 genus Hyphomicrobium 4 0 1427356 2327 Hyphomicrobium nitrativorans 1 species 0 1734 2619925 no rank 1 1 Hyphomicrobium sp. MC1 species 717785 1734 0 53399 2180 0 species 1 Hyphomicrobium denitrificans 2 Pelagibacterium genus 26 0 1 1393 1082930 0 1367 531813 species 1 Pelagibacterium halotolerans genus Devosia 4 46913 6720 1 0 197 196773 6523 0 3 no rank 0 1655 2083786 Devosia sp. I507 1 species species 1 Devosia sp. H5989 0 1643450 2096 0 1736675 2772 1 Devosia sp. A16 species genus 2 Rhodomicrobium 0 19 1068 1594 1 1069 1575 0 species Rhodomicrobium vannielii 1 Phyllobacteriaceae 20 family 187 0 1 30700 69277 genus Aminobacter 2 0 59 31988 2884 1 Aminobacter aminovorans 1 species 0 2825 83263 genus 2 Chelativorans 0 23 449972 1 2013 no rank 1 2643807 1990 0 0 266779 1990 Chelativorans sp. BNC1 1 species genus Mesorhizobium 9 68287 1 20915 0 629 no rank 1 2375 325217 0 0 278153 2375 species 1 Mesorhizobium sp. WSM1497 species 1 Mesorhizobium japonicum 2066070 2339 0 0 536018 2095 1 Mesorhizobium australicum species 0 381 2669 Mesorhizobium loti 1 species 0 3307 39645 species Mesorhizobium ciceri 1 1670800 1859 0 species 1 Mesorhizobium sp. B7 species 1 Mesorhizobium opportunistum 0 3220 593909 species Mesorhizobium amorphae 1 2422 71433 0 245876 1 1455 22 0 Nitratireductor 2 genus 1 Nitratireductor basaltis species 0 472175 1433 1 1670 274591 23 0 2 Hoeflea genus no rank 1 2614931 1647 0 1620421 1647 0 species Hoeflea sp. IMCC20628 1 2 Phyllobacterium genus 28100 1576 1 27 0 1 Phyllobacterium zundukense species 0 1549 1867719 6340 1 772 16 0 Bartonellaceae 18 family genus 17 Bartonella 773 1 6324 0 73 species 1 Bartonella bacilliformis 774 311 0 0 1318743 289 Bartonella ancashensis 1 species 354 33045 0 species 1 Bartonella grahamii 1 Bartonella australis species 203 388640 0 Bartonella quintana 1 species 207 803 0 species 1 Bartonella henselae 38323 281 0 403 56426 0 Bartonella clarridgeiae 1 species 0 85701 600 1 Bartonella tribocorum species 0 263 33047 species Bartonella vinsonii 1 1802 1686310 0 species Bartonella apis 1 6 no rank 2645622 1538 0 Bartonella sp. Raccoon60 1 species 0 210 1933912 species Bartonella sp. JB15 1 250 1933906 0 1933910 213 0 species 1 Bartonella sp. A1379B 1933904 416 0 species Bartonella sp. WD16.2 1 species Bartonella sp. 1-1C 1 0 199 515256 species Bartonella sp. JB63 1 0 250 1933907 family 5 Beijerinckiaceae 0 20 1 2202 45404 genus 2 Methylocella 0 6 120652 1454 1 species Methylocella silvestris 1 0 199596 1448 0 5 532 1 728 genus Beijerinckia 2 0 533 723 1 Beijerinckia indica species 119045 1 40700 0 255 family 15 Methylobacteriaceae genus 9 Methylobacterium 0 1196 23129 1 407 1 Methylobacterium aquaticum species 270351 3262 0 3 no rank 2615210 8208 0 species 1 Methylobacterium sp. AMS5 925818 2212 0 2661 1479019 0 species Methylobacterium sp. C1 1 426117 3335 0 species 1 Methylobacterium sp. 4-46 species 1 Methylobacterium radiotolerans 0 31998 2942 2082 418223 0 Methylobacterium phyllosphaerae 1 species 114616 2983 0 Methylobacterium nodulans 1 species 0 2456 334852 species 1 Methylobacterium oryzae 0 63 186650 1 3085 genus 2 Microvirga 0 1882682 3022 species 1 Microvirga ossetica 3 genus 2282523 14231 0 Methylobacterium populi 1 species 0 5051 223967 29429 1989 0 species 1 Methylobacterium zatmanii 408 7191 0 species Methylobacterium extorquens 1 119042 5217 0 6 no rank 1734920 1 1584 44 0 2 Pseudorhodoplanes genus species Pseudorhodoplanes sinuspersici 1 1235591 1540 0 1 1384 1484898 0 59 genus 2 Methyloceanibacter 0 1384459 1325 species Methyloceanibacter caenitepidi 1 Hartmannibacter 2 genus 23 0 1 2249 1572860 species 1 Hartmannibacter diazotrophicus 1482074 2226 0 2 order 0 2800059 1409 2 family 0 2800061 1409 7 0 1 1409 74317 Maricaulis 2 genus 74318 1402 0 1 Maricaulis maris species order 66 Rhodospirillales 0 1241 204441 118906 1 73636 1 41295 1330 0 30 Rhodospirillaceae family 0 446 1 28097 191 genus Azospirillum 5 5278 528244 0 Azospirillum thiophilum 1 species 1 Azospirillum lipoferum species 0 10541 193 1 Azospirillum humicireducens species 2553 1226968 0 Azospirillum brasilense 1 species 192 9279 0 13134 1 16953 0 374 genus 5 Magnetospirillum 0 4329 55518 Magnetospirillum gryphiswaldense 1 species species 1 Magnetospirillum magneticum 4032 84159 0 0 2617991 8218 2 no rank 1639348 4044 0 species Magnetospirillum sp. ME-1 1 1663591 4174 0 species 1 Magnetospirillum sp. XM-1 genus Haematospirillum 2 0 35 1 647 1804663 0 612 1549855 1 Haematospirillum jordaniae species 2 Nitrospirillum genus 1543705 5743 1 42 0 Nitrospirillum amazonense 1 species 0 28077 5701 genus 3 Thalassospira 0 25 3354 1 168934 Thalassospira sp. CSC3H3 1 species 0 2048283 1598 0 220697 1731 Thalassospira xiamenensis 1 species genus Rhodospirillum 3 1081 6374 1 0 95 0 2351 1085 species 1 Rhodospirillum rubrum 0 34018 3928 species 1 Rhodospirillum centenum genus 2 Niveispirillum 0 100 1543704 2854 1 species 1 Niveispirillum cyanobacteriorum 1612173 2754 0 2 Tistrella genus 109 0 1 4177 171436 171437 4068 0 Tistrella mobilis 1 species 1 genus 386 1263978 0 0 1263979 386 Candidatus Endolissoclinum faulkneri 1 species genus 2 Pararhodospirillum 1612157 2133 1 0 20 0 2113 1084 1 Pararhodospirillum photometricum species 0 10 1 1588 1182780 genus Magnetospira 2 1 no rank 0 1578 2685734 1 Magnetospira sp. QH-2 species 0 1288970 1578 645 0 1 44029 433 35 Acetobacteraceae family 0 241 1 8495 1434011 genus 5 Komagataeibacter 0 1403 33995 1 Komagataeibacter europaeus species 0 28448 3823 1 Komagataeibacter xylinus species 0 1921 265960 1 Komagataeibacter nataicola species 0 1107 1177712 Komagataeibacter medellinensis 1 species 3 Acidiphilium genus 522 1 3897 87 0 species 1 Acidiphilium multivorum 0 62140 1912 1 Acidiphilium cryptum species 0 524 1898 0 11 91914 1003 1 genus 2 Asaia 0 992 91915 Asaia bogorensis 1 species genus Roseomonas 3 8039 1 125216 0 236 0 2617492 3755 1 no rank 0 2018065 3755 species Roseomonas sp. FDAARGOS_362 1 1 Roseomonas gilardii species 0 4048 257708 genus Gluconobacter 3 0 25 1 3316 441 0 949 318683 1 Gluconobacter albidus species species 1 Gluconobacter oxydans 442 2342 0 genus 2 Granulibacter 364409 1 2805 0 65 species Granulibacter bethesdensis 1 0 2740 364410 Neoasaia 2 genus 1427 1 320496 6 0 species 1 Neoasaia chiangmaiensis 0 320497 1421 0 109 434 9254 1 genus 8 Acetobacter 1 Acetobacter persici species 1076596 1474 0 640 65959 0 1 Acetobacter pomorum species 151157 1153 0 1 subgenus 0 435 1153 species 1 Acetobacter aceti species 1 Acetobacter oryzifermentans 536 1633874 0 species Acetobacter tropicalis 1 104102 1448 0 Acetobacter pasteurianus 1 species 2580 438 0 Acetobacter senegalensis 1 species 1314 446692 0 0 26 89583 1 2949 genus Gluconacetobacter 2 33996 2923 0 species Gluconacetobacter diazotrophicus 1 genus Kozakia 2 0 13 153497 1 1175 Kozakia baliensis 1 species 0 1162 153496 0 1 1602345 1 1024 genus 2 Parasaccharibacter 1510841 1023 0 Parasaccharibacter apium 1 species 0 82117 7713 no rank 8 2 clade 0 62654 572 genus Candidatus Puniceispirillum 2 767891 572 1 0 1 0 571 767892 Candidatus Puniceispirillum marinum 1 species 3060 1 1632780 66 0 Phreatobacter 2 genus species 1 Phreatobacter sp. S-12 0 2994 1868589 0 31 213485 1 1733 genus 2 Micavibrio 0 349221 1702 species Micavibrio aeruginosavorus 1 1 2348 991903 27 0 2 Polymorphum genus 991904 2321 0 species Polymorphum gilvum 1 0 2800060 3023 5 order 69657 1 3023 75 0 5 Hyphomonadaceae family 2723 736 0 1 genus 736 2724 0 species Hirschia baltica 1 3 Hyphomonas genus 34 0 85 2212 1 2630699 744 0 1 no rank Hyphomonas sp. Mor2 1 species 0 744 1906738 1434 81032 0 1 Hyphomonas neptunium species 32 0 1 10603 766 Rickettsiales 54 order 2 Candidatus Midichloriaceae family 275 1 1328881 6 0 genus 1 0 269 411566 species 1 Candidatus Midichloria mitochondrii 0 234827 269 0 5 1 4983 775 family Rickettsiaceae 27 genus 1 0 2115980 302 0 302 2115978 1 Candidatus Phycorickettsia trachydisci species tribe 25 0 4676 33988 genus 2 Orientia 0 5 69474 374 1 784 369 0 Orientia tsutsugamushi 1 species 1 4302 780 577 0 Rickettsia 23 genus 0 1129742 750 2 species group species 1 Rickettsia bellii 33990 488 0 0 262 788 species Rickettsia canadensis 1 672 114292 0 species group 2 370 782 0 species Rickettsia prowazekii 1 species Rickettsia typhi 1 302 785 0 0 114295 424 1 no rank 424 337479 0 1 Rickettsia endosymbiont of Bemisia tabaci species 0 114277 1879 species group 17 1 Rickettsia felis species 42862 354 0 species 1 Rickettsia akari 0 226 786 0 781 27 species Rickettsia conorii 1 0 132 47589 species 1 Rickettsia peacockii Rickettsia japonica 1 species 35790 51 0 species Rickettsia rhipicephali 1 115 33992 0 species 1 Rickettsia australis 0 289 787 species Rickettsia monacensis 1 0 189 109232 35794 28 0 Rickettsia slovaca 1 species 0 35792 22 species Rickettsia parkeri 1 species Rickettsia philipii 1 0 43 1105106 species Rickettsia rickettsii 1 783 65 0 35788 82 0 1 Rickettsia africae species 33989 111 0 1 Rickettsia amblyommatis species Rickettsia massiliae 1 species 0 35791 55 Rickettsia heilongjiangensis 1 species 37 226665 0 Rickettsia montanensis 1 species 53 33991 0 Anaplasmataceae 23 family 1 4817 942 9 0 943 1 2319 17 0 6 Ehrlichia genus species group 4 0 1834 106178 species Ehrlichia muris 1 0 35795 305 species Ehrlichia ruminantium 1 0 779 730 0 945 347 species Ehrlichia chaffeensis 1 452 944 0 Ehrlichia canis 1 species no rank 1 0 468 106181 0 468 391036 species 1 Ehrlichia sp. HF 952 1749 0 tribe 8 Wolbachia 8 genus 41 0 1749 1 953 2640676 1708 0 no rank 7 1 Wolbachia endosymbiont of Drosophila melanogaster species 224 163164 0 66084 218 0 1 Wolbachia sp. wRi species 0 519 77038 species Wolbachia endosymbiont of Drosophila simulans 1 species 1 Wolbachia endosymbiont of Brugia malayi 250 80849 0 246273 181 0 species 1 Wolbachia endosymbiont of Cimex lectularius Wolbachia endosymbiont of Onchocerca volvulus 1 species 0 77551 160 species Wolbachia endosymbiont of Onchocerca ochengi 1 156 100901 0 0 1 1 350 33993 genus Neorickettsia 4 species Neorickettsia risticii 1 950 104 0 0 131 33994 species 1 Neorickettsia helminthoeca 1 Neorickettsia sennetsu species 951 114 0 genus 4 Anaplasma 0 2 768 390 1 species group 1 106179 141 0 0 141 948 species Anaplasma phagocytophilum 1 1 Anaplasma marginale species 0 148 770 769 99 0 species Anaplasma centrale 1 1 no rank 496 1699067 0 0 496 1528098 species 1 Rickettsiales bacterium Ac37b 5 0 255473 1 528 4 Parvularculales order 5 0 255474 1 523 3 Parvularculaceae family 1 518 208215 0 17 genus 2 Parvularcula species Parvularcula bermudensis 1 0 501 208216 Caulobacterales 20 order 294 0 204458 1 37986 0 662 76892 1 37692 family Caulobacteraceae 19 29 0 1 3024 20 Phenylobacterium 2 genus species 1 Phenylobacterium zucineum 0 284016 2995 7 Brevundimonas genus 245 0 1 11947 41275 no rank 3 6076 2622653 0 species 1 Brevundimonas sp. GW460-12-10-14-LB2 1671 1827469 0 0 1938605 2137 Brevundimonas sp. LM2 1 species 1532555 2268 0 species 1 Brevundimonas sp. DS20 0 41276 1694 1 Brevundimonas vesicularis species 0 588932 1689 1 Brevundimonas naejangsanensis species 0 74313 2243 1 Brevundimonas subvibrioides species genus Asticcacaulis 2 76890 1 2372 0 15 0 2357 78587 Asticcacaulis excentricus 1 species 291 0 1 18447 75 Caulobacter 6 genus 2101 69395 0 1 Caulobacter henricii species 3661 2648921 0 no rank 1 1 Caulobacter sp. K31 species 366602 3661 0 0 88688 3468 Caulobacter segnis 1 species 69666 2715 0 species Caulobacter mirabilis 1 species Caulobacter vibrioides 1 0 155892 6211 no rank 1 1240 81440 0 species 1 Caulobacteraceae bacterium OTSz_A_272 0 1240 1759059 order Rhodobacterales 92 204455 1 132367 0 867 family 91 Rhodobacteraceae 1 131500 31989 0 2576 26 0 367771 1 3233 Marinovum 2 genus 1 Marinovum algicola species 3207 42444 0 genus 3 Sulfitobacter 0 31 1 4172 60136 no rank 1 1778 196795 0 1917485 1778 0 species Sulfitobacter sp. AM1-D1 1 1402135 2363 0 species 1 Sulfitobacter pseudonitzschiae 0 5 1 2093 53945 genus 4 Octadecabacter Octadecabacter temperatus 1 species 570 1458307 0 0 918 1217908 species 1 Octadecabacter antarcticus Octadecabacter arcticus 1 species 0 53946 600 no rank 2 2852 58840 0 Rhodobacteraceae bacterium 1 species 0 831 1904441 species 1 Rhodobacteraceae bacterium QY30 0 2033435 2021 0 14 74030 1 1634 genus 2 Roseovarius species Roseovarius mucosus 1 0 1620 215743 0 30 1 6809 875170 genus 5 Celeribacter 1411902 1921 0 1 Celeribacter manganoxidans species species 1 Celeribacter indicus 1208324 2505 0 0 1758178 1588 species 1 Celeribacter ethanolicus 765 1397108 0 1 Celeribacter marinus species 1 2574 1609958 5 0 2 Confluentimicrobium genus 2643318 2569 0 1 no rank Confluentimicrobium sp. EMB200-NS6 1 species 2569 1609966 0 genus Ketogulonicigenium 3 0 32 1 3101 92944 92945 1537 0 species 1 Ketogulonicigenium vulgare 0 1532 92947 Ketogulonicigenium robustum 1 species 263377 5574 0 genus 2 1 no rank 0 2705 2640570 species 1 Yangia sp. CCB-MM3 1792508 2705 0 0 2869 1229727 1 Thiobacimonas profunda species 57 0 1 4280 227873 Pannonibacter 2 genus 0 121719 4223 1 Pannonibacter phragmitetus species 23 0 1 2342 191028 2 Leisingera genus 0 2319 133924 Leisingera methylohalidivorans 1 species 4 Labrenzia genus 1 6105 478070 133 0 Labrenzia aggregata 1 species 0 187304 1906 0 4066 2648686 no rank 2 species 1 Labrenzia sp. VG12 1921 2021862 0 species 1 Labrenzia sp. CP4 0 2145 1674922 Dinoroseobacter 2 genus 5 0 309512 2012 1 215813 2007 0 Dinoroseobacter shibae 1 species genus 2 Jannaschia 1322 1 188905 0 10 1312 2645469 0 no rank 1 0 1312 290400 1 Jannaschia sp. CCS1 species Loktanella 1 genus 0 16 245186 3431 1 58842 14 0 2 Sagittula genus 3417 2624628 0 1 no rank Sagittula sp. P11 1 species 2009329 3417 0 0 172 1 12652 302485 genus 5 Phaeobacter 1 Phaeobacter inhibens species 4359 221822 0 species 1 Phaeobacter porticola 0 1844006 1069 0 3501 1580596 1 Phaeobacter piscinae species 0 60890 3551 species Phaeobacter gallaeciensis 1 2211641 1483 0 genus 1 1 Loktanella vestfoldensis species 0 1483 245188 genus 9 Paracoccus 0 488 1 20697 265 0 1765 246570 1 no rank Paracoccus sp. BM15 1 species 1765 1529068 0 3239 266 0 species 1 Paracoccus denitrificans 147645 3603 0 Paracoccus yeei 1 species Paracoccus aminophilus 1 species 1577 34003 0 0 2219 1945662 species Paracoccus contaminans 1 Paracoccus zhejiangensis 1 species 0 1077935 2868 species 1 Paracoccus sp. CBA4604 0 2065379 2401 0 2537 34004 species 1 Paracoccus aminovorans genus 2 Pelagibaca 0 13 360528 1 2900 1250539 2887 0 1 Pelagibaca abyssi species genus 2 Roseibacterium 159345 1 1738 0 15 Roseibacterium elongatum 1 species 0 159346 1723 genus 1 0 1284657 425 1 Planktomarina temperata species 425 1284658 0 genus Ruegeria 3 0 17 1 3787 97050 0 1244 2625375 no rank 1 0 1244 292414 1 Ruegeria sp. TM1040 species 2526 89184 0 Ruegeria pomeroyi 1 species Antarctobacter 2 genus 6 0 74032 1897 1 0 1891 74033 1 Antarctobacter heliothermus species Thioclava 2 genus 11 0 1 2085 285107 species 1 Thioclava nitratireducens 0 2074 1915078 0 436357 46 genus Thalassococcus 1 genus Defluviimonas 2 1097466 2522 1 0 10 2512 1335048 0 Defluviimonas alba 1 species 0 3 119541 1224 1 genus Rhodobaca 2 1221 441209 0 species 1 Rhodobaca barguzinensis 1310 1 299261 0 2 genus 2 Tateyamaria 299262 1308 0 1 Tateyamaria omphalii species genus 1 1649279 1505 0 0 379347 1505 1 Ruegeria mobilis species genus 2 Halocynthiibacter 1 507 1579315 0 6 0 501 1579316 Halocynthiibacter arcticus 1 species Rhodobacter 5 genus 235 0 11888 1 1060 3820 196779 0 no rank 2 0 2355 2033869 species Rhodobacter sp. CZR27 1 Rhodobacter sp. LPB0142 1 species 0 1850250 1465 species Rhodobacter sphaeroides 1 5595 1063 0 0 2238 1061 Rhodobacter capsulatus 1 species 702 1759396 0 genus 1 0 702 2622455 1 no rank species 1 Marivivens sp. JLT3646 0 702 1920883 34008 7451 1 0 90 genus Rhodovulum 4 2 no rank 0 2631432 3844 0 2196 308754 species Rhodovulum sp. MB263 1 1 Rhodovulum sp. P5 species 1564506 1648 0 Rhodovulum sulfidophilum 1 species 0 35806 3517 0 11 2555 1 2433 genus Roseobacter 3 1283 42443 0 1 Roseobacter litoralis species 1 Roseobacter denitrificans species 2434 1261 0 0 68525 368308 203 subphylum 29547 97441 1 225 0 73 Epsilonproteobacteria class 1 95808 213849 2333 0 Campylobacterales 67 order 72294 1 81625 5154 0 Campylobacteraceae 41 family 5 no rank 0 7002 2321108 1939 2321187 0 genus 1 species Arcobacter sp. LPB0137 1 0 1939 1850254 genus Arcobacter 3 0 20 28196 1 3361 Arcobacter butzleri 1 species 28197 1981 0 0 28199 1360 1 Arcobacter nitrofigilis species 2321207 1702 0 1 no rank 0 944547 1702 species Arcobacter sp. L 1 51 0 57665 1 4023 Sulfurospirillum 9 genus 44674 360 0 Sulfurospirillum barnesii 1 species 0 359 194424 Sulfurospirillum halorespirans 1 species 577 66821 0 1 Sulfurospirillum multivorans species 366522 580 0 1 Sulfurospirillum cavolei species Sulfurospirillum deleyianum 1 species 0 376 65553 no rank 3 0 2618290 1720 0 1986224 575 1 Sulfurospirillum sp. SL2-1 species 1 Sulfurospirillum sp. JPD-1 species 0 622 220622 1 Sulfurospirillum sp. UCH001 species 523 1581011 0 0 694 194 65446 1 genus 26 Campylobacter species Campylobacter lari 1 0 201 1924 no rank 4 2593542 2230 0 1500960 677 0 species 1 Campylobacter sp. RM16704 1660074 620 0 1 Campylobacter sp. RM8964 species 562 1660076 0 1 Campylobacter sp. RM12175 species 1 Campylobacter sp. RM6137 species 0 371 1660073 Campylobacter curvus 1 species 397 200 0 0 197 8264 1 Campylobacter jejuni species Campylobacter cuniculorum 1 species 0 374106 476 Campylobacter hyointestinalis 1 species 801 198 0 1965231 960 0 species 1 Campylobacter pinnipediorum Campylobacter coli 1 species 195 38283 0 1 Campylobacter helveticus species 428 28898 0 0 497724 561 species Campylobacter subantarcticus 1 0 1052 199 species 1 Campylobacter concisus Campylobacter avium 1 species 0 359 522485 0 686 1031542 species 1 Campylobacter volucris 0 260714 550 species 1 Campylobacter insulaenigrae 824 827 0 species 1 Campylobacter gracilis Campylobacter fetus 1 species 196 1416 0 0 444 1244531 Campylobacter iguaniorum 1 species species Campylobacter peloridis 1 590 488546 0 species Campylobacter ureolyticus 1 827 676 0 2036 75658 0 species 1 Campylobacter lanienae 0 206 1228 species 1 Campylobacter sputorum 564 76517 0 species 1 Campylobacter hominis family 5 0 3380 2771472 Nitratifractor 2 genus 1328 1 269260 6 0 1 Nitratifractor salsuginis species 269261 1322 0 genus Sulfurovum 3 0 11 265570 2052 1 species Sulfurovum lithotrophicum 1 1152 206403 0 1 no rank 0 2646778 889 1 Sulfurovum sp. NBC37-1 species 387093 889 0 5 family 2771471 1975 0 607 1 286130 1 0 Sulfuricurvum 2 genus Sulfuricurvum kujiense 1 species 0 606 148813 Sulfurimonas 3 genus 202746 1 1368 13 0 39766 629 0 species Sulfurimonas denitrificans 1 0 726 202747 species Sulfurimonas autotrophica 1 72293 1 6495 0 16 family Helicobacteraceae 15 26 0 209 6113 1 Helicobacter 12 genus species 1 Helicobacter felis 0 214 289 1 Helicobacter bilis species 0 370 37372 species 1 Helicobacter pylori 0 2376 210 0 212 152 species 1 Helicobacter acinonychis species 1 Helicobacter mustelae 382 217 0 species Helicobacter cetorum 1 138563 533 0 1 Helicobacter cinaedi species 0 330 213 1 no rank 275 2593540 0 Helicobacter sp. MIT 01-6242 1 species 0 222136 275 32025 436 0 species 1 Helicobacter hepaticus 0 1591088 471 species 1 Helicobacter himalayensis 0 473 76936 1 Helicobacter typhlonius species 366 1 843 0 7 genus 2 Wolinella Wolinella succinogenes 1 species 0 359 844 order 5 235899 1408 0 2 family 449 2795691 0 genus 2 Nitratiruptor 449 1 269258 0 1 no rank 1 0 448 2624044 species Nitratiruptor sp. SB155-2 1 387092 448 0 Nautiliaceae 3 family 2 0 1 959 224467 Nautilia 2 genus 22 0 957 1 191291 Nautilia profundicola 1 species 0 244787 935 678 0 28221 1 270867 130 Deltaproteobacteria class order 20 Desulfobacterales 0 130 213118 19250 1 family Desulfobulbaceae 9 213121 1 8606 0 21 genus 2 Desulfurivibrio 427922 1 2657 0 18 species Desulfurivibrio alkaliphilus 1 0 427923 2639 1 1080 53318 0 2 genus 2 Desulfocapsa 0 65555 1078 Desulfocapsa sulfexigens 1 species genus Desulfotalea 2 109168 997 1 0 2 Desulfotalea psychrophila 1 species 0 995 84980 2 Desulfobulbus genus 37 0 3851 1 893 species Desulfobulbus sp. ORNL 1 3814 1986146 0 48 0 213119 1 10514 Desulfobacteraceae 10 family 1479 1 2295 2 0 2 Desulfobacterium genus 1 Desulfobacterium autotrophicum species 1477 2296 0 0 14 1 1627 28222 genus Desulfobacula 2 1 Desulfobacula toluolica species 1613 28223 0 896 1 4976 52 0 Desulfococcus 3 genus species Desulfococcus multivorans 1 0 2223 897 0 181663 2701 species Desulfococcus oleovorans 1 218207 1 2384 9 0 Desulfatibacillum 2 genus 259354 2375 0 Desulfatibacillum alkenivorans 1 species 666 0 69541 1 51395 24 Desulfuromonadales order 9 Desulfuromonadaceae family 1 15197 213421 270 0 890 1 5885 0 47 genus 3 Desulfuromonas 0 2614637 2814 no rank 1 species Desulfuromonas sp. DDH964 1 0 2814 1823759 3024 1603606 0 Desulfuromonas soudanensis 1 species 18 9042 1 82 0 5 Pelobacter genus 0 3638 29543 1 Pelobacter propionicus species species Pelobacter acetylenicus 1 2134 29542 0 Pelobacter carbinolicus 1 species 0 1675 19 2620299 1513 0 no rank 1 1513 1842532 0 species 1 Pelobacter sp. SFB93 0 263 213422 1 35532 family 14 Geobacteraceae 527 0 28231 32440 1 11 Geobacter genus 1 Geobacter sulfurreducens species 0 35554 2933 0 345632 2994 1 Geobacter pickeringii species 0 313985 3258 1 Geobacter lovleyi species species 1 Geobacter anodireducens 0 1340425 3628 225194 3471 0 species Geobacter bemidjiensis 1 28232 2921 0 1 Geobacter metallireducens species 2 no rank 0 2627627 8761 species Geobacter sp. M18 1 0 443143 4627 0 4134 443144 1 Geobacter sp. M21 species Geobacter daltonii 1 species 1973 1203471 0 species 1 Geobacter uraniireducens 351604 1974 0 genus Geoalkalibacter 2 0 8 392332 2829 1 Geoalkalibacter subterraneus 1 species 0 483547 2821 order 6 Desulfurellales 0 11 213113 1 1419 family 5 Desulfurellaceae 0 1 1 1408 117942 33001 794 1 13 0 Desulfurella 2 genus 1 Desulfurella acetivorans species 0 781 33002 Hippea 2 genus 8 0 613 1 84404 605 84405 0 Hippea maritima 1 species 1 5181 213462 42 0 11 Syntrophobacterales order family 3 Syntrophobacteraceae 0 83 1 1694 213465 29 0 29526 1611 1 2 Syntrophobacter genus 0 119484 1582 1 Syntrophobacter fumaroxidans species family Syntrophaceae 7 213468 1 3445 0 15 1368 1 60892 2 0 Desulfobacca 2 genus 0 60893 1366 1 Desulfobacca acetoxidans species genus 2 Desulfomonile 0 5 2357 807 1 0 2358 802 1 Desulfomonile tiedjei species genus 2 Syntrophus 0 9 1255 1 43773 species Syntrophus aciditrophicus 1 0 316277 1246 order 38 Myxococcales 0 1448 1 109789 29 8 suborder 80812 17268 0 28 0 1055686 1 3310 Sandaracinaceae 3 family 2 Sandaracinus genus 1055688 1 3282 50 0 3232 927083 0 Sandaracinus amylolyticus 1 species Polyangiaceae 5 family 13958 1 49 94 0 genus 2 Chondromyces 0 14 50 1 2762 species 1 Chondromyces crocatus 0 52 2748 39643 1 11102 56 0 2 Sorangium genus Sorangium cellulosum 1 species 0 11046 56 0 224462 5248 3 suborder 3 Kofleriaceae family 66 0 224464 1 5248 0 55 162027 1 5182 genus 2 Haliangium species 1 Haliangium ochraceum 0 80816 5127 26 suborder 0 85825 80811 0 32 1524213 2911 1 family 3 Vulgatibacteraceae 1524214 2879 1 0 40 genus 2 Vulgatibacter 0 2839 1391653 1 Vulgatibacter incomptus species family 9 Archangiaceae 0 476 39 22736 1 5968 1 42 0 82 genus Cystobacter 2 5886 43 0 species Cystobacter fuscus 1 2 Melittangium genus 48 0 5155 1 44 Melittangium boletus 1 species 0 5107 83453 genus 2 Archangium 1 6383 47 0 64 species Archangium gephyra 1 0 6319 48 Stigmatella 2 genus 32 0 4754 1 40 0 4722 41 species 1 Stigmatella aurantiaca family 5 Anaeromyxobacteraceae 0 223 1 17497 1524215 0 376 161492 17274 1 genus 4 Anaeromyxobacter 2620896 8616 0 2 no rank 0 4658 447217 1 Anaeromyxobacter sp. K species 404589 3958 0 1 Anaeromyxobacter sp. Fw109-5 species 1 Anaeromyxobacter dehalogenans species 161493 8282 0 1 42681 31 251 0 9 Myxococcaceae family 0 1040 1 28395 32 genus Myxococcus 5 Myxococcus xanthus 1 species 0 5087 34 1 Myxococcus hansupus species 1297742 5257 0 species Myxococcus fulvus 1 0 11945 33 5066 83455 0 species Myxococcus stipitatus 1 3 Corallococcus genus 278 0 1 14035 83461 184914 7100 0 1 Corallococcus coralloides species Myxococcus macrosporus 1 species 0 6657 35 47 0 453227 1 5285 4 Desulfarculales order 1 5238 453228 0 48 family 3 Desulfarculaceae Desulfarculus 2 genus 453229 1 5190 32 0 0 453230 5158 species Desulfarculus baarsii 1 Desulfovibrionales 26 order 213115 1 77870 760 0 213117 1026 1 0 3 family Desulfohalobiaceae 3 Desulfohalobium 2 genus 12 0 45662 1023 1 species 1 Desulfohalobium retbaense 45663 1011 0 Desulfovibrionaceae 18 family 554 0 194924 1 69627 Lawsonia 2 genus 41707 1 973 9 0 0 964 29546 Lawsonia intracellularis 1 species genus 1 0 2582840 3879 species 1 Desulfovibrio africanus 0 3879 873 genus 9 Desulfovibrio 872 49762 1 0 512 Desulfovibrio desulfuricans 1 species 9013 876 0 881 11619 0 species 1 Desulfovibrio vulgaris 1 Desulfovibrio fairfieldensis species 5940 44742 0 1 Candidatus Desulfovibrio trichonymphae species 0 1594 1725232 901 10041 0 Desulfovibrio piger 1 species 0 2593640 2647 no rank 1 species Desulfovibrio sp. G11 1 2647 631220 0 3048 58180 0 species 1 Desulfovibrio alaskensis 0 184917 5348 Desulfovibrio magneticus 1 species 0 2202 2794998 genus 1 0 880 2202 Desulfovibrio salexigens 1 species genus Pseudodesulfovibrio 4 0 136 1 12257 2035811 57320 2090 0 species Pseudodesulfovibrio profundus 1 1 Pseudodesulfovibrio indicus species 5702 1716143 0 0 4329 182210 Pseudodesulfovibrio aespoeensis 1 species 0 144 1 6457 213116 family 4 Desulfomicrobiaceae 61 0 898 6313 1 Desulfomicrobium 3 genus 0 132132 2991 Desulfomicrobium orale 1 species 0 899 3261 1 Desulfomicrobium baculatum species class 901 Gammaproteobacteria 1 1717464 1236 0 2993 623 0 1 54363 135619 68 Oceanospirillales order family Saccharospirillaceae 4 255527 1 1894 0 2 genus 1 789 230494 0 species 1 Reinekea forsetii 789 1336806 0 Gynuella 2 genus 4 0 1445504 1103 1 0 1099 1445505 Gynuella sunshinyii 1 species Kangiellaceae 6 family 1 1398 1920240 9 0 0 30 261963 1 1389 genus Kangiella 5 0 306 1144748 species 1 Kangiella sediminilitoris species Kangiella koreensis 1 334 261964 0 species 1 Kangiella geojedonensis 0 356 914150 species 1 Kangiella profundi 1561924 363 0 family 9 Alcanivoracaceae 1 8888 224372 0 104 0 21 2025617 1 1180 genus Ketobacter 2 0 1159 1917421 species Ketobacter alkanivorans 1 1 7604 59753 132 0 Alcanivorax 6 genus species 1 Alcanivorax dieselolei 285091 2069 0 0 2638842 585 1 no rank 0 1113728 585 species 1 Alcanivorax sp. NBRC 101098 561 59754 0 species Alcanivorax borkumensis 1 Alcanivorax xenomutans 1 species 1942 1094342 0 0 1306787 2315 1 Alcanivorax pacificus species 516 0 28256 1 32974 Halomonadaceae 31 family Cobetia 2 genus 4 0 204286 1 2282 species Cobetia marina 1 28258 2278 0 genus 15 Halomonas 0 461 1 20418 2745 species 1 Halomonas huangheensis 1066 1178482 0 species Halomonas chromatireducens 1 0 507626 1890 species 1 Halomonas aestuarii 1897729 2686 0 8 no rank 0 2609666 9411 1 Halomonas sp. GT species 1971364 701 0 Halomonas sp. 1513 1 species 2987 1883416 0 species Halomonas sp. KO116 1 0 927 1504981 0 1949203 816 species Halomonas sp. 'Soap Lake #6' 1 817 1962264 0 species 1 Halomonas sp. 'Soap Lake #7' 0 1118153 419 1 Halomonas sp. GFAJ-1 species species Halomonas sp. SF2003 1 0 1797 2136172 species Halomonas sp. R57-5 1 947 1610576 0 species 1 Halomonas campaniensis 213554 600 0 0 475662 2634 1 Halomonas beimenensis species 1 Halomonas hydrothermalis species 0 115561 1670 0 21 1 3481 504090 genus Kushneria 3 1784 698828 0 species 1 Kushneria konosiri 1 Kushneria marisflavi species 0 1676 157779 26 0 376488 1865 1 Halotalea 2 genus 1839 376489 0 Halotalea alkalilenta 1 species 4 no rank 114403 382 0 0 114185 20 1 genus 20 114186 0 Candidatus Carsonella ruddii 1 species 1 0 207 1 1495768 2 Candidatus Evansia genus 1495769 206 0 1 Candidatus Evansia muelleri species genus 1 0 235572 155 0 91844 155 species Candidatus Portiera aleyrodidarum 1 genus Chromohalobacter 2 0 50 42054 1823 1 Chromohalobacter salexigens 1 species 0 158080 1773 2 Salinicola genus 404432 2207 1 26 0 1771309 2181 0 Salinicola tamaricis 1 species 1 1768 224379 0 13 family 3 Hahellaceae 158481 1 1755 0 10 genus 2 Hahella species Hahella chejuensis 1 0 158327 1745 family 12 Oceanospirillaceae 1 6190 135620 0 54 1 1010 1537406 11 0 Bacterioplanes 2 genus species 1 Bacterioplanes sanyensis 0 999 1249553 36 0 28253 1830 1 4 Marinomonas genus no rank 1 0 196814 599 0 599 400668 species Marinomonas sp. MWYL1 1 species 1 Marinomonas posidonica 0 543 936476 1 Marinomonas mediterranea species 0 119864 652 Marinobacterium 2 genus 1 2203 48075 31 0 Marinobacterium aestuarii 1 species 2172 1821621 0 545 1 188907 1 0 Oleispira 2 genus 0 188908 544 species 1 Oleispira antarctica 1 genus 0 187492 548 187493 548 0 species 1 Thalassolituus oleivorans 2 family 628 191033 0 141450 1 628 18 0 2 Oleiphilus genus 1 Oleiphilus messinensis species 610 141451 0 order 44 Vibrionales 135623 1 34731 0 44 Vibrionaceae 43 family 1 34687 641 298 0 28 0 511678 1977 1 Aliivibrio 4 genus 668 874 0 species 1 Aliivibrio fischeri species 1 Aliivibrio salmonicida 0 40269 468 0 80852 607 1 Aliivibrio wodanis species 2 Grimontia genus 1 758 246861 15 0 673 743 0 species 1 Grimontia hollisae 28038 1 662 0 546 genus Vibrio 30 10249 717610 0 species group 10 0 2315253 1501 species subgroup 2 150340 567 0 Vibrio antiquarius 1 species 934 50719 0 Vibrio diabolicus 1 species species Vibrio natriegens 1 0 1092 691 0 566 766224 species Vibrio jasicida 1 Vibrio parahaemolyticus 1 species 670 1635 0 0 447 190895 Vibrio rotiferianus 1 species 0 1411 680 species 1 Vibrio campbellii 0 669 928 Vibrio harveyi 1 species species 1 Vibrio alginolyticus 1946 663 0 0 723 696485 Vibrio owensii 1 species 2 no rank 0 1345 2614977 0 1116375 684 species Vibrio sp. EJY3 1 0 661 2014742 species Vibrio sp. 2521-89 1 0 445 1891919 species group 1 species 1 Vibrio tubiashii 29498 445 0 0 674 1300 Vibrio mimicus 1 species 0 190893 1496 1 Vibrio coralliilyticus species Vibrio tasmaniensis 1 species 524 212663 0 Vibrio tritonius 1 species 0 1435069 820 526 52443 0 species Vibrio tapetis 1 29494 828 0 species 1 Vibrio furnissii 0 654 553239 species 1 Vibrio breoganii 0 666 1358 1 Vibrio cholerae species 1 Vibrio vulnificus species 0 672 2264 species Vibrio hyugaensis 1 0 467 1534743 0 687 688 Vibrio gazogenes 1 species 1 Vibrio nigripulchritudo species 0 28173 821 0 676 1542 1 Vibrio fluvialis species Vibrio anguillarum 1 species 55601 986 0 2025808 446 0 Vibrio qinghaiensis 1 species 0 45658 733 species Vibrio scophthalmi 1 4 Photobacterium genus 1 2911 657 20 0 species Photobacterium gaetbulicola 1 1295392 1212 0 733 74109 0 Photobacterium profundum 1 species 946 38293 0 species 1 Photobacterium damselae Paraphotobacterium 2 genus 2 0 2042066 1 705 1 Paraphotobacterium marinum species 0 1755811 703 3664 33811 0 2 no rank species gamma proteobacterium HdN1 1 1332 83406 0 endosymbiont of unidentified scaly snail isolate Monju 1 species 0 2332 1248727 1 61843 135622 0 256 order 106 Alteromonadales family 4 Psychromonadaceae 1 1397 267894 0 9 0 1 67572 1388 1 genus 3 Psychromonas 2614957 484 0 no rank 1 species 1 Psychromonas sp. CNPT3 0 314282 484 species 1 Psychromonas ingrahamii 0 357794 903 9 Colwelliaceae family 13 0 267889 1 4580 0 4 1518149 600 1 genus Thalassotalea 2 species Thalassotalea crassostreae 1 0 596 1763536 0 9 1 3967 28228 genus Colwellia 6 species 1 Colwellia beringensis 1967665 722 0 1 Colwellia psychrerythraea species 741 28229 0 no rank 3 0 2495 196834 Colwellia sp. PAMC 20917 1 species 1816218 666 0 0 58049 1008 species 1 Colwellia sp. MT41 Colwellia sp. PAMC 21821 1 species 0 1816219 821 0 35 267888 1 12452 family Pseudoalteromonadaceae 25 53246 12417 1 0 331 genus Pseudoalteromonas 24 0 668 314281 1 Pseudoalteromonas tunicata species 1 Pseudoalteromonas phenolica species 513 161398 0 0 414 247523 1 Pseudoalteromonas aliena species species 1 Pseudoalteromonas agarivorans 0 176102 408 640 43657 0 1 Pseudoalteromonas luteoviolacea species 0 819 288 1 Pseudoalteromonas atlantica species 228 366 0 species Pseudoalteromonas haloplanktis 1 species 1 Pseudoalteromonas marina 0 267375 307 400 152297 0 species 1 Pseudoalteromonas issachenkonii 0 819 43658 1 Pseudoalteromonas rubra species 43659 420 0 species 1 Pseudoalteromonas tetraodonis no rank 5 0 2279 194690 1 Pseudoalteromonas sp. NC201 species 0 501 1514074 species Pseudoalteromonas sp. Bsw20308 1 529 283699 0 407 1761891 0 Pseudoalteromonas sp. 13-15 1 species species 1 Pseudoalteromonas sp. SM9913 0 234831 421 421 1720343 0 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 28107 507 0 species Pseudoalteromonas espejiana 1 1 Pseudoalteromonas spongiae species 913 298657 0 1 Pseudoalteromonas arctica species 394751 435 0 0 166935 326 Pseudoalteromonas translucida 1 species 422 28109 0 1 Pseudoalteromonas nigrifaciens species 1348114 860 0 species 1 Pseudoalteromonas piratica 570 43662 0 species 1 Pseudoalteromonas piscicida 267891 1 684 0 8 family Moritellaceae 3 2 Moritella genus 676 1 58050 5 0 Moritella viscosa 1 species 0 80854 671 family 30 Alteromonadaceae 72275 1 23058 0 180 2 0 1621534 1 539 Paraglaciecola 2 genus species 1 Paraglaciecola psychrophila 0 537 326544 1 1251 1751872 25 0 Lacimicrobium 2 genus Lacimicrobium alkaliphilum 1 species 0 1526571 1226 0 48 226 5239 1 genus 10 Alteromonas species Alteromonas stellipolaris 1 0 553 233316 species Alteromonas macleodii 1 0 28108 1424 no rank 3 881 2614992 0 1777491 333 0 species Alteromonas sp. Mac1 1 278 2058133 0 species Alteromonas sp. MB-3u-76 1 1917158 270 0 species Alteromonas sp. RW2A1 1 species Alteromonas australica 1 714 589873 0 314275 881 0 1 Alteromonas mediterranea species Alteromonas addita 1 species 287094 370 0 species 1 Alteromonas naphthalenivorans 368 715451 0 261825 881 1 0 7 genus 2 Agarivorans 874 680279 0 1 Agarivorans gilvus species genus Marinobacter 10 2742 13976 1 0 151 species 1 Marinobacter salarius 0 1420917 2373 0 1874317 914 Marinobacter salinus 1 species 2743 2064 0 species 1 Marinobacter hydrocarbonoclasticus Marinobacter psychrophilus 1 species 330734 863 0 1 Marinobacter adhaerens species 0 1033846 1431 1420916 1535 0 1 Marinobacter similis species no rank 3 0 83889 4645 species 1 Marinobacter sp. LQ44 0 2141 1749259 490759 922 0 species 1 Marinobacter sp. BSs20148 0 1582 1671721 Marinobacter sp. CP1 1 species Glaciecola 3 genus 4 0 89404 992 1 0 300231 618 species 1 Glaciecola nitratireducens 1 no rank 0 370 2618684 370 983545 0 species Glaciecola sp. 4H-3-7+YE-5 1 Idiomarinaceae 6 family 49 0 267893 1 1702 135575 1653 1 0 8 genus Idiomarina 5 0 135577 474 1 Idiomarina loihiensis species 1 Idiomarina piscisalsi species 1096243 218 0 2 no rank 953 2614829 0 326 2055892 0 Idiomarina sp. X4 1 species 2100422 627 0 species 1 Idiomarina sp. OT37-5b 12 0 1 2661 267892 3 Ferrimonadaceae family 22 0 2649 1 44011 2 Ferrimonas genus Ferrimonas balearica 1 species 0 2627 44012 123 0 1 15053 267890 25 Shewanellaceae family genus Shewanella 24 0 188 22 1 14930 Shewanella psychrophila 1 species 0 225848 734 1 Shewanella halifaxensis species 271098 620 0 species 1 Shewanella piezotolerans 423 404011 0 0 948 359303 species 1 Shewanella loihica 459 70864 0 species Shewanella pealeana 1 0 1447 60478 species 1 Shewanella amazonensis 56812 541 0 1 Shewanella frigidimarina species 1 Shewanella woodyi species 604 60961 0 0 70863 507 species Shewanella oneidensis 1 Shewanella baltica 1 species 0 62322 1536 0 2018305 589 species 1 Shewanella bicestrii species 1 Shewanella putrefaciens 24 714 0 Shewanella denitrificans 1 species 0 192073 399 6 no rank 0 2903 196818 503 60481 0 species 1 Shewanella sp. MR-7 0 2029986 387 species 1 Shewanella sp. WE21 1 Shewanella sp. MR-4 species 60480 520 0 491 351745 0 1 Shewanella sp. W3-18-1 species species Shewanella sp. Pdp11 1 0 431 2059264 571 94122 0 1 Shewanella sp. ANA-3 species Shewanella marisflavi 1 species 649 260364 0 0 93973 488 Shewanella japonica 1 species 1 Shewanella violacea species 60217 564 0 1 Shewanella sediminis species 0 617 271097 no rank 13 6627 118884 0 349742 1501 1 0 9 genus Sedimenticola 2 0 1543721 1492 1 Sedimenticola thiotaurini species 3 0 655184 1 924 Candidatus Thioglobus 3 genus 510 1427364 0 species Candidatus Thioglobus singularis 1 0 1705394 411 1 Candidatus Thioglobus autotrophicus species genus Thiolapillus 2 1 1491 1608298 0 22 0 1076588 1469 Thiolapillus brandeum 1 species 0 668 198346 1 clade Candidatus Baumannia cicadellinicola 1 species 0 186490 668 genus Pseudohongiella 2 0 1 1524249 1 1067 0 1249552 1066 species Pseudohongiella spirulinae 1 clade 3 0 32036 976 302 113267 0 species 1 Bathymodiolus septemdierum thioautotrophic gill symbiont 0 410330 400 Calyptogena okutanii thioautotrophic gill symbiont 1 species genus 1 0 1541743 274 386487 274 0 species Candidatus Ruthia magnifica 1 118969 1 8267 0 7 order 21 Legionellales 0 9 1 972 118968 family 5 Coxiellaceae 0 212 134284 no rank 1 1592897 212 0 Coxiella-like endosymbiont 1 species genus 3 Coxiella 0 3 751 1 776 species 1 Coxiella burnetii 0 620 777 0 2676648 128 1 no rank 325775 128 0 Coxiella endosymbiont of Amblyomma americanum 1 species 14 0 444 7288 1 15 Legionellaceae family 452 1 465 1 0 Tatlockia 2 genus 1 Tatlockia micdadei species 451 451 0 12 Legionella genus 445 6822 1 43 0 0 2096 446 species 1 Legionella pneumophila 1 Legionella clemsonensis species 1867846 488 0 0 608 66969 species Legionella waltersii 1 0 199 2005262 species Legionella endosymbiont of Polyplax serrata 1 1 Legionella lansingensis species 45067 324 0 Legionella longbeachae 1 species 0 450 582 species 1 Legionella oakridgensis 29423 650 0 1 Legionella spiritensis species 0 387 452 species Legionella hackeliae 1 449 610 0 species 1 Legionella fallonii 0 96230 380 species 1 Legionella sainthelensi 455 28087 0 104 0 1 4485 1692040 6 Acidiferrobacterales order 1 4381 1692041 99 0 5 Acidiferrobacteraceae family Sulfurifustis 2 genus 1692042 1 1992 31 0 Sulfurifustis variabilis 1 species 0 1675686 1961 46 0 2290 1 1744881 2 Sulfuricaulis genus 1 Sulfuricaulis limicola species 0 1620215 2244 1 1792 1775403 114 0 4 Nevskiales order 8 568386 0 1 Sinobacteraceae family 0 2689614 1670 2 family genus 2 Steroidobacter 0 9 469322 1 1670 Steroidobacter denitrificans 1 species 465721 1661 0 Xanthomonadales 54 order 119943 1 135614 1251 0 1300 0 32033 1 98560 Xanthomonadaceae 39 family 0 5 1955 1 83614 genus 2 Luteimonas Luteimonas sp. 100111 1 species 0 1950 2006110 83618 8752 1 0 118 genus 3 Pseudoxanthomonas 314722 6011 0 species Pseudoxanthomonas suwonensis 1 Pseudoxanthomonas spadix 1 species 0 2623 415229 775 0 40323 1 34640 Stenotrophomonas 9 genus no rank 4 196198 9787 0 1904944 2720 0 species Stenotrophomonas sp. LM091 1 Stenotrophomonas sp. WZN-1 1 species 2189 2005046 0 species Stenotrophomonas sp. KCTC 12332 1 0 1793721 2058 0 1827305 2820 species 1 Stenotrophomonas sp. MYb57 0 995085 15326 species group 1 0 40324 15326 species 1 Stenotrophomonas maltophilia Stenotrophomonas acidaminiphila 1 species 128780 4514 0 species Stenotrophomonas rhizophila 1 0 2159 216778 0 2079 83617 1 Stenotrophomonas nitritireducens species Xanthomonas 17 genus 38341 1 338 1930 0 species 1 Xanthomonas phaseoli 0 1272 1985254 2 species group 0 7066 643453 species Xanthomonas fuscans 1 0 366648 1803 1 Xanthomonas citri species 0 346 5263 56454 1956 0 species 1 Xanthomonas hortorum 0 3206 347 Xanthomonas oryzae 1 species 1883 442694 0 species 1 Xanthomonas perforans 0 1199 366650 species Xanthomonas alfalfae 1 species Xanthomonas fragariae 1 0 1251 48664 0 339 4997 Xanthomonas campestris 1 species 0 29447 1019 species 1 Xanthomonas albilineans 0 1447 56459 Xanthomonas vasicola 1 species 1 Xanthomonas axonopodis species 0 1243 53413 species Xanthomonas euvesicatoria 1 1283 456327 0 1 Xanthomonas sacchari species 2871 56458 0 0 343 4000 1 Xanthomonas translucens species Xanthomonas vesicatoria 1 species 0 56460 1718 0 182 68 1 12624 genus 5 Lysobacter 0 69 3177 Lysobacter enzymogenes 1 species species 1 Lysobacter capsici 0 3598 435897 Lysobacter gummosus 1 species 0 2407 262324 species Lysobacter antibioticus 1 3260 84531 0 genus 2 Xylella 0 15 948 1 2370 0 2371 933 species Xylella fastidiosa 1 Rhodanobacteraceae 14 family 20132 1 1775411 166 0 0 2233801 1201 1 genus species Xanthomonadales bacterium D13 1 0 1201 2021234 2 Frateuria genus 70411 1 1799 61 0 0 81475 1738 species Frateuria aurantia 1 288 0 231454 1 8765 4 Dyella genus species Dyella jiangningensis 1 1379159 2639 0 species Dyella thiooxydans 1 0 445710 2881 Dyella japonica 1 species 231455 2957 0 2 Luteibacter genus 15 0 1 1834 242605 species 1 Luteibacter rhizovicinus 242606 1819 0 genus 2 Dokdonella 323413 3043 1 0 33 Dokdonella koreensis 1 species 323415 3010 0 Rhodanobacter 2 genus 3324 1 75309 48 0 666685 3276 0 species 1 Rhodanobacter denitrificans 135618 1 9430 210 0 Methylococcales 13 order 0 99 403 1 9220 family 12 Methylococcaceae 1719 1 413 0 97 genus 2 Methylococcus Methylococcus capsulatus 1 species 1622 414 0 genus 2 Methylovulum 0 4 762296 1 1029 species 1 Methylovulum psychrotolerans 1704499 1025 0 genus Methylomonas 5 0 106 5546 1 416 Methylomonas methanica 1 species 0 421 1056 0 1692 2608980 1 no rank 1 Methylomonas sp. DH-1 species 1727196 1692 0 702114 1667 0 species Methylomonas koyamae 1 1538553 1025 0 Methylomonas denitrificans 1 species Methylomicrobium 2 genus 1 827 39773 2 0 species 1 Methylomicrobium alcaliphilum 825 271065 0 Pseudomonadales 129 order 72274 1 292621 1393 0 Pseudomonadaceae 86 family 1659 0 1 265880 135621 genus 80 Pseudomonas 0 9865 286 255245 1 1 Pseudomonas cremoricolorata species 0 1910 157783 0 198620 2687 species Pseudomonas koreensis 1 1594 216142 0 Pseudomonas rhizosphaerae 1 species 9 species group 136843 32009 0 76761 1356 0 1 Pseudomonas veronii species 0 1642 200450 Pseudomonas trivialis 1 species species Pseudomonas azotoformans 1 47878 3574 0 Pseudomonas fluorescens 1 species 17341 294 0 Pseudomonas protegens 1 species 0 380021 2757 0 1130 47879 species 1 Pseudomonas corrugata species 1 Pseudomonas mandelii 0 1336 75612 0 76758 1540 species Pseudomonas orientalis 1 species Pseudomonas poae 1 1333 200451 0 1853130 1121 0 Pseudomonas silesiensis 1 species Pseudomonas cerasi 1 species 0 1824 1583341 6 species group 136841 36502 0 53408 6133 0 1 Pseudomonas citronellolis species 0 287 11647 Pseudomonas aeruginosa 1 species 53412 2721 0 species 1 Pseudomonas resinovorans species subgroup 1 0 3811 1232139 species 1 Pseudomonas furukawaii 1149133 3811 0 Pseudomonas alcaligenes 1 species 3097 43263 0 1 Pseudomonas mendocina species 300 9093 0 0 1788301 1047 species 1 Pseudomonas versuta 0 21817 136849 species group 8 no rank 1 2775504 1097 0 0 1206777 1097 1 Pseudomonas sp. Lz4W species 1452 46257 0 species 1 Pseudomonas avellanae species subgroup 2 3713 251698 0 0 1830 29438 species 1 Pseudomonas savastanoi species Pseudomonas amygdali 1 47877 1883 0 1111 36746 0 species Pseudomonas cichorii 1 33069 1744 0 species 1 Pseudomonas viridiflava 0 9600 251695 species subgroup 1 9600 317 0 1 Pseudomonas syringae species species 1 Pseudomonas syringae group genomosp. 3 0 251701 3100 no rank 30 196821 52275 0 species 1 Pseudomonas sp. URMO17WK12:I11 2615 1283291 0 species Pseudomonas sp. NC02 1 1470 2067572 0 0 1532 1931241 Pseudomonas sp. S-6-2 1 species 0 1737 1338689 species 1 Pseudomonas sp. JY-Q Pseudomonas sp. TCU-HL1 1 species 1856685 2496 0 species Pseudomonas sp. TKP 1 1415630 1539 0 1898684 1987 0 species 1 Pseudomonas sp. LPH1 1 Pseudomonas sp. LH1G9 species 2083055 1916 0 Pseudomonas sp. FDAARGOS_380 1 species 1895 2018067 0 1259844 1870 0 1 Pseudomonas sp. FGI182 species 1930532 1526 0 species Pseudomonas sp. CC6-YY-74 1 0 830 1981174 species Pseudomonas sp. M30-35 1 1 Pseudomonas sp. DR 5-09 species 0 1619 1534110 1993 69328 0 1 Pseudomonas sp. VLB120 species species 1 Pseudomonas sp. CCOS 191 1959 1649877 0 species Pseudomonas sp. MYb193 1 1036 1827300 0 0 1207075 1288 species Pseudomonas sp. UW4 1 species 1 Pseudomonas sp. HLS-6 2049589 1281 0 0 2109 1500686 Pseudomonas sp. Os17 1 species Pseudomonas sp. ATCC 13867 1 species 0 3123 1294143 species 1 Pseudomonas sp. GR 6-02 1332 1659194 0 0 1612 2083052 1 Pseudomonas sp. SWI36 species 2083051 1333 0 1 Pseudomonas sp. SWI6 species species 1 Pseudomonas sp. MRSN12121 1983 1611770 0 species Pseudomonas sp. LG1D9 1 0 2083054 1323 2069256 1424 0 Pseudomonas sp. XWY-1 1 species Pseudomonas sp. SWI44 1 species 1390 2083053 0 Pseudomonas sp. St29 1 species 2001 1500687 0 2025 1636610 0 1 Pseudomonas sp. PONIH3 species Pseudomonas sp. StFLB209 1 species 0 2031 1028989 12826 136842 0 species group 2 2684 296 0 species Pseudomonas fragi 1 species Pseudomonas chlororaphis 1 587753 10142 0 1 Pseudomonas antarctica species 1292 219572 0 1 Pseudomonas parafulva species 0 157782 3071 species 1 Pseudomonas alkylphenolica 237609 1187 0 species group 2 0 136846 16596 74829 2155 0 species Pseudomonas balearica 1 0 14441 578833 species subgroup 1 0 14441 316 species Pseudomonas stutzeri 1 species group 6 39844 136845 0 3647 47880 0 1 Pseudomonas fulva species 47885 2884 0 Pseudomonas oryzihabitans 1 species Pseudomonas plecoglossicida 1 species 0 1691 70775 5073 76759 0 1 Pseudomonas monteilii species species 1 Pseudomonas putida 0 303 22438 0 78327 4111 species 1 Pseudomonas mosselii Pseudomonas alcaliphila 1 species 0 2238 101564 0 244566 1126 species 1 Pseudomonas lurida 0 930166 3335 1 Pseudomonas brassicacearum species species Pseudomonas psychrotolerans 1 2456 237610 0 0 2802 65741 species Pseudomonas knackmussii 1 0 2067 312306 Pseudomonas entomophila 1 species 1 Pseudomonas frederiksbergensis species 104087 3754 0 8250 351 0 subfamily 3 118 0 352 8250 1 3 Azotobacter genus 1 Azotobacter vinelandii species 3390 354 0 1 Azotobacter chroococcum species 353 4742 0 genus Oblitimonas 2 0 10 1849530 1 726 1697053 716 0 Oblitimonas alkaliphila 1 species family Moraxellaceae 42 0 183 468 1 25348 0 260 469 1 18379 genus 25 Acinetobacter 202950 609 0 1 species strain 1 Acinetobacter sp. ADP1 0 62977 609 Acinetobacter schindleri 1 species 0 108981 548 species 1 Acinetobacter haemolyticus 0 29430 651 0 401 40214 species 1 Acinetobacter johnsonii Acinetobacter radioresistens 1 species 434 40216 0 1 Acinetobacter soli species 457 487316 0 1 Acinetobacter oleivorans species 1148157 494 0 1 Acinetobacter larvae species 0 502 1789224 794 756892 0 species Acinetobacter indicus 1 species group 5 909768 7346 0 species 1 Acinetobacter calcoaceticus 1083 471 0 Acinetobacter baumannii 1 species 2826 470 0 1 Acinetobacter lactucae species 479 1785128 0 1957 48296 0 species Acinetobacter pittii 1 0 106654 1001 1 Acinetobacter nosocomialis species 834 106648 0 Acinetobacter bereziniae 1 species no rank 7 196816 3594 0 1 Acinetobacter sp. NCu2D-2 species 1608473 561 0 species 1 Acinetobacter sp. ACNIH1 545 1636603 0 1 Acinetobacter sp. SWBY1 species 0 2079596 354 1808001 598 0 species Acinetobacter sp. LoGeW2-3 1 0 462 1646498 1 Acinetobacter sp. TTH0-4 species 0 1758189 470 Acinetobacter sp. ACNIH2 1 species species 1 Acinetobacter sp. TGL-Y2 1407071 604 0 0 1324350 918 species 1 Acinetobacter equi 1 Acinetobacter junii species 40215 537 0 50 0 497 4085 1 11 Psychrobacter genus 6 no rank 0 2432 196806 0 1720344 316 species Psychrobacter sp. AntiMn-1 1 species 1 Psychrobacter sp. DAB_AL43B 1028416 425 0 0 330 571800 1 Psychrobacter sp. G species 1 Psychrobacter sp. P2G3 species 0 461 1699622 species Psychrobacter sp. PRwf-1 1 349106 344 0 1 Psychrobacter sp. P11G5 species 0 556 1699624 Psychrobacter urativorans 1 species 429 45610 0 0 330922 410 species Psychrobacter cryohalolentis 1 1 Psychrobacter arcticus species 334543 399 0 Psychrobacter alimentarius 1 species 0 365 261164 Moraxella 5 genus 17 0 1 2701 475 0 29433 404 Moraxella ovis 1 species 732 386891 0 species Moraxella bovoculi 1 species Moraxella catarrhalis 1 0 476 480 Moraxella osloensis 1 species 1072 34062 0 1 15193 72273 16 0 36 Thiotrichales order Thiotrichaceae 5 family 3 0 1 962 135617 6 0 1021 580 1 2 Beggiatoa genus species 1 Beggiatoa leptomitoformis 574 288004 0 genus 2 Thioploca 379 1 40751 0 1 1 Thioploca ingrica species 378 40754 0 0 94 1 10172 34064 family Francisellaceae 15 genus 2 Allofrancisella 0 2 1869285 1 574 species 1 Allofrancisella guangzhouensis 594679 572 0 12 Francisella genus 262 1 9504 64 0 species 1 Francisella sp. TX077308 0 676 573569 1 Francisella halioticida species 549298 693 0 species 1 Francisella persica 573 954 0 0 2092 263 species 1 Francisella tularensis 1 Francisella philomiragia species 0 1480 28110 2 no rank 2610885 1063 0 0 504 1547445 species 1 Francisella sp. FSC1006 species Francisella sp. MA067296 1 0 559 475375 Francisella sp. CA97-1460 1 species 777 1542390 0 1 Francisella noatunensis species 0 902 657445 1 Francisella hispaniensis species 0 541 622488 species Francisella sp. TX077310 1 0 643 573570 Piscirickettsiaceae 15 family 20 0 135616 4043 1 34067 1116 1 0 6 genus 4 Cycloclasticus Cycloclasticus zancles 1 species 0 386 1329899 no rank 2 0 2621467 724 385025 329 0 species Cycloclasticus sp. P1 1 Cycloclasticus sp. PY97N 1 species 0 395 728003 Thiomicrospira 3 genus 933 1 739 25 0 0 92245 372 Thiomicrospira aerophila 1 species species Thiomicrospira cyclica 1 342 147268 0 genus 2 Hydrogenovibrio 0 17 28884 1 339 species Hydrogenovibrio crunogenus 1 322 39765 0 2 0 762 1 1237 2 Piscirickettsia genus 760 1238 0 species Piscirickettsia salmonis 1 40222 1067 1 0 1 genus 3 Methylophaga 0 720 754476 species Methylophaga nitratireducenticrescens 1 1 Methylophaga frappieri species 346 754477 0 1914 0 91347 897772 1 248 Enterobacterales order 39 Yersiniaceae family 196 0 1903411 71809 1 0 8 1745211 1 925 genus Chania 2 1 Chania multitudinisentens species 917 1639108 0 24 1565532 0 1 Rouxiella genus 613 1 50289 2461 0 16 Serratia genus 0 615 12792 species 1 Serratia marcescens no rank 8 0 17280 2647522 Serratia sp. SCBI 1 species 2301 488142 0 0 671990 2657 1 Serratia sp. FGI94 species 1 Serratia sp. MYb239 species 2033438 2560 0 species Serratia sp. ATCC 39006 1 0 104623 1030 0 768493 1505 species 1 Serratia sp. AS13 1 Serratia sp. AS12 species 0 768490 1504 0 3065 1327989 species 1 Serratia sp. FS14 2658 1758196 0 1 Serratia sp. SSNIH1 species 0 28151 1555 Serratia proteamaculans 1 species 0 2997 61651 1 Serratia ficaria species species Serratia rubidaea 1 0 2904 61652 species Serratia plymuthica 1 0 4443 82996 1 Serratia liquefaciens species 614 2198 0 species 1 Serratia fonticola 3659 47917 0 genus Yersinia 13 629 12516 1 0 1018 1649845 2245 0 species group 3 0 367190 490 1 Yersinia similis species 1 Yersinia pseudotuberculosis species 0 1088 633 species Yersinia pestis 1 632 667 0 1 no rank 0 2653513 628 species Yersinia sp. FDAARGOS_228 1 1839800 628 0 29485 686 0 1 Yersinia rohdei species 1 Yersinia enterocolitica species 2685 630 0 29483 624 0 species 1 Yersinia aldovae 1942 29484 0 species Yersinia frederiksenii 1 species Yersinia intermedia 1 631 722 0 1 Yersinia ruckeri species 0 29486 563 0 836 263819 Yersinia aleksiciae 1 species 567 28152 0 species Yersinia kristensenii 1 0 1 929812 1 2250 genus Gibbsiella 2 1 Gibbsiella quercinecans species 2249 929813 0 108 0 34037 1 5609 4 Rahnella genus Rahnella aquatilis 1 species 34038 1987 0 0 3514 2635087 no rank 2 0 1805933 1597 1 Rouxiella sp. ERMR1:05 species Rahnella sp. Y9602 1 species 741091 1917 0 22 Morganellaceae family 55 0 14254 1 1903414 Xenorhabdus 6 genus 50 0 626 3903 1 450 351679 0 1 Xenorhabdus hominickii species species 1 Xenorhabdus bovienii 0 40576 1308 570 40577 0 species 1 Xenorhabdus poinarii species Xenorhabdus doucetiae 1 351671 848 0 1 Xenorhabdus nematophila species 0 677 628 2097 1 586 107 0 Providencia 4 genus 893 588 0 species Providencia stuartii 1 649 587 0 1 Providencia rettgeri species 1 Providencia alcalifaciens species 126385 448 0 0 90 1 2899 581 genus 2 Morganella 0 2809 582 1 Morganella morganii species 2 Arsenophonus genus 1 472 637 2 0 634113 470 0 Arsenophonus symbiont of Lipoptena fortisetosa 1 species 583 1 2564 136 0 Proteus 3 genus 585 833 0 Proteus vulgaris 1 species species Proteus mirabilis 1 584 1595 0 genus 4 Photorhabdus 0 24 29487 2264 1 0 838 29488 species Photorhabdus luminescens 1 species Photorhabdus temperata 1 0 654 574560 species Photorhabdus asymbiotica 1 748 291112 0 1903409 1 37081 175 0 28 Erwiniaceae family Pantoea 11 genus 1176 0 53335 1 18686 species 1 Pantoea rwandensis 0 1076550 1160 0 2630326 5996 no rank 3 Pantoea sp. At-9b 1 species 592316 1662 0 2550 1484157 0 1 Pantoea sp. PSNIH2 species 0 1784 1484158 Pantoea sp. PSNIH1 1 species Pantoea alhagi 1 species 1891675 1442 0 Candidatus Pantoea carbekii 1 species 0 1235990 259 0 1055 66269 species Pantoea stewartii 1 0 553 1912 Pantoea ananatis 1 species Pantoea vagans 1 species 0 470934 2684 0 1654067 3002 1 species group 0 3002 549 Pantoea agglomerans 1 species 0 4646 2100764 2 genus 0 665913 2798 species Pantoea calida 1 1 Pantoea gaviniae species 0 1848 665914 82986 1 869 33 0 2 Tatumella genus 1 Tatumella citrea species 0 53336 836 0 10 32199 1 3384 genus 2 Buchnera species Buchnera aphidicola 1 0 3374 9 genus 8 Erwinia 1 8751 551 0 203 Candidatus Erwinia sp. ErCipseudotaxifoliae 1 species 0 1922217 125 0 1619313 2401 1 Erwinia gerundensis species 79967 1175 0 species 1 Erwinia pyrifoliae species 1 Erwinia tasmaniensis 338565 1138 0 182337 1404 0 Erwinia billingiae 1 species 1085 552 0 Erwinia amylovora 1 species no rank 1 0 2622719 1220 0 215689 1220 1 Erwinia sp. Ejp617 species 0 2 51228 1 570 genus 2 Wigglesworthia 0 51229 568 species 1 Wigglesworthia glossinidia no rank 2 0 451511 1690 702 1690 1 0 52 genus Plesiomonas 2 1638 703 0 Plesiomonas shigelloides 1 species 543 715903 1 4525 0 119 Enterobacteriaceae family genus Citrobacter 14 0 3618 1 56443 544 0 2644389 3850 2 no rank Citrobacter sp. FDAARGOS_156 1 species 0 1645 1702170 1 Citrobacter sp. CFNIH10 species 0 1920110 2205 species Citrobacter amalonaticus 1 4983 35703 0 0 37604 1344959 7 species group species 1 Citrobacter freundii complex sp. CFNIH4 0 5149 2077148 2077147 5755 0 species Citrobacter freundii complex sp. CFNIH3 1 2077149 2548 0 1 Citrobacter freundii complex sp. CFNIH9 species 3848 57706 0 species 1 Citrobacter braakii Citrobacter freundii 1 species 0 546 15882 0 2066049 1704 1 Citrobacter freundii complex sp. CFNIH2 species 1 Citrobacter werkmanii species 0 2718 67827 0 67824 1633 Citrobacter farmeri 1 species 0 2647 545 1 Citrobacter koseri species 2108 67825 0 Citrobacter rodentium 1 species 1 genus 1335483 2145 0 Shimwellia blattae 1 species 0 563 2145 genus Cronobacter 8 0 454 413496 1 16949 1163710 1653 0 1 Cronobacter condimenti species 0 413503 2071 species 1 Cronobacter malonaticus species 1 Cronobacter universalis 0 1945 535744 1 Cronobacter turicensis species 413502 1499 0 4960 28141 0 species Cronobacter sakazakii 1 0 413501 2211 species 1 Cronobacter muytjensii 0 2156 413497 Cronobacter dublinensis 1 species 20 no rank 191675 3742 0 84563 3742 0 20 clade 1 genus 0 367 1682492 0 367 1410383 species 1 Candidatus Tachikawaea gelatinosa 1906660 1 259 2 0 Candidatus Mikella 2 genus 257 1778264 0 1 Candidatus Mikella endobia species 1 genus 0 1906661 361 361 1070130 0 species Candidatus Gullanella endobia 1 0 1 1 219 1906657 genus Candidatus Doolittlea 2 0 1778262 218 species 1 Candidatus Doolittlea endobia 4 clade 0 829 146507 genus Candidatus Hamiltonella 2 0 3 1 284 568987 1 Candidatus Hamiltonella defensa species 138072 281 0 0 1199245 332 species 1 secondary endosymbiont of Ctenarytaina eucalypti 0 134287 213 secondary endosymbiont of Heteropsylla cubana 1 species clade 1 0 136 199891 secondary endosymbiont of Trabutina mannipara 1 species 0 136 1835721 genus 2 Candidatus Hoaglandella 1 105 1906659 0 1 species 1 Candidatus Hoaglandella endobia 0 1778263 104 7 clade 0 84564 1466 Candidatus Blochmannia 7 genus 4 0 1466 1 203804 101534 192 0 Candidatus Blochmannia pennsylvanicus 1 species 0 251542 181 Candidatus Blochmannia chromaiodes 1 species 0 251535 327 species Candidatus Blochmannia vafer 1 0 203907 325 species 1 Candidatus Blochmannia floridanus 0 437 711328 2 no rank 243 1505597 0 species 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 1505596 194 species 1 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1330545 1 12324 47 0 Lelliottia 4 genus species 1 Lelliottia nimipressuralis 7976 69220 0 species 1 Lelliottia jeotgali 1796 1907578 0 61646 2505 0 species 1 Lelliottia amnigena 0 358 83654 1 7947 genus Leclercia 4 species 1 Leclercia adecarboxylata 2231 83655 0 2627398 5358 0 no rank 2 species 1 Leclercia sp. LSNIH1 2729 1920114 0 Leclercia sp. LSNIH3 1 species 1920116 2629 0 158483 5650 1 0 17 genus Cedecea 2 158822 5633 0 species Cedecea neteri 1 5 Kosakonia genus 1330547 1 8371 78 0 1 Kosakonia radicincitans species 2573 283686 0 1 Kosakonia oryzae species 497725 1700 0 0 1798 1158459 Kosakonia sacchari 1 species species Kosakonia cowanii 1 0 208223 2222 0 243 1048757 genus 1 1048758 243 0 species Candidatus Moranella endobia 1 1 genus 0 324 401618 species Candidatus Riesia pediculicola 1 401619 324 0 160674 1 10515 256 0 Raoultella 3 genus 0 7478 54291 Raoultella ornithinolytica 1 species species 1 Raoultella planticola 0 2781 575 5 no rank 36866 9784 0 2146 693444 0 Enterobacteriaceae bacterium strain FGI 57 1 species species 1 Enterobacteriaceae bacterium ENNIH3 2187 1920128 0 species Plautia stali symbiont 1 0 1696 891974 species Enterobacteriaceae bacterium ENNIH2 1 2087 1920109 0 1668 2066051 0 Enterobacteriaceae bacterium ENNIH1 1 species 1 genus 0 579 1660 species Kluyvera intermedia 1 61648 1660 0 4 Shigella genus 620 14435 1 890 0 species Shigella flexneri 1 3294 623 0 2629414 5750 0 1 no rank species Shigella sp. PAMC 28760 1 5750 1813821 0 0 622 4501 Shigella dysenteriae 1 species 3272 0 1 76066 570 Klebsiella 10 genus Klebsiella michiganensis 1 species 0 1134687 6061 species 1 Klebsiella aerogenes 7691 548 0 Klebsiella oxytoca 1 species 571 13449 0 3110 2026240 0 species Klebsiella quasivariicola 1 1463165 4792 0 1 Klebsiella quasipneumoniae species species 1 Klebsiella variicola 244366 6698 0 23771 573 0 1 Klebsiella pneumoniae species no rank 2 2608929 7222 0 1934254 3926 0 Klebsiella sp. M5al 1 species 1 Klebsiella sp. LTGPAF-6F species 3296 1905288 0 genus 3 Pluralibacter 0 33 1330546 1 8661 0 61647 5847 Pluralibacter gergoviae 1 species [Enterobacter] lignolyticus 1 species 1334193 2781 0 genus Candidatus Ishikawaella 2 1 361 409304 0 1 168169 360 0 species Candidatus Ishikawaella capsulata 1 721 0 1 73757 561 5 Escherichia genus 2557 564 0 species 1 Escherichia fergusonii species 1 Escherichia marmotae 0 1499973 1593 0 562 65202 Escherichia coli 1 species 1 Escherichia albertii species 208962 3684 0 73 0 1 23038 590 Salmonella 3 genus 28901 21573 0 Salmonella enterica 1 species Salmonella bongori 1 species 0 1392 54736 547 1 378963 0 8665 genus 22 Enterobacter no rank 9 81391 2608935 0 1 Enterobacter sp. 638 species 1120 399742 0 species 1 Enterobacter sp. HK169 1868135 9107 0 Enterobacter sp. Crenshaw 1 species 10574 1977566 0 species 1 Enterobacter sp. R4-368 1166130 1928 0 species Enterobacter sp. SA187 1 1914861 1718 0 Enterobacter sp. ODB01 1 species 0 1827481 33502 0 1560339 9794 1 Enterobacter sp. E20 species species Enterobacter sp. FY-07 1 0 1650 1692238 species Enterobacter sp. CRENT-193 1 0 11998 2051905 288907 354276 0 12 species group 0 550 119994 species Enterobacter cloacae 1 22928 1812935 0 species 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 21081 0 158836 37360 1 Enterobacter hormaechei 3 species 0 1812934 4804 subspecies 1 Enterobacter cloacae complex 'Hoffmann cluster III' 1296536 11475 0 subspecies Enterobacter xiangfangensis 1 299767 21626 0 1 Enterobacter ludwigii species Enterobacter kobei 1 species 0 34643 208224 species Enterobacter asburiae 1 0 15617 61645 34774 2757714 0 no rank 3 7206 1915310 0 species Enterobacter cloacae complex sp. ECNIH7 1 0 6588 2027919 1 Enterobacter cloacae complex bacterium species species 1 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 20980 2077137 1 Enterobacter cancerogenus species 1965 69218 0 1903416 1 608 0 1 family Budviciaceae 3 82984 1 607 0 3 genus Pragia 2 1 Pragia fontium species 0 604 82985 1 33116 1903410 197 0 20 Pectobacteriaceae family genus Pectobacterium 6 0 505 1 10316 122277 0 2042057 1974 Pectobacterium polaris 1 species 0 554 4393 1 Pectobacterium carotovorum species 993 55208 0 species 1 Pectobacterium wasabiae species 1 Pectobacterium parmentieri 0 1905730 1000 0 1451 29471 1 Pectobacterium atrosepticum species genus Sodalis 5 0 92 84565 1 5424 1620 63612 0 species Sodalis glossinidius 1 1 Sodalis praecaptivus species 1239307 2266 0 1929246 139 0 species Sodalis endosymbiont of Henestaris halophilus 1 0 1307 1486991 species Candidatus Sodalis pierantonius 1 genus 6 Dickeya 0 575 15254 1 204037 0 1089444 4527 species Dickeya solani 1 Dickeya fangzhongdai 1 species 0 2644 1778540 204039 2375 0 Dickeya dianthicola 1 species 1 Dickeya dadantii species 204038 2848 0 0 204042 2285 species 1 Dickeya zeae genus Brenneria 2 0 26 1 1925 71655 0 1109412 1899 species 1 Brenneria goodwinii family 14 Hafniaceae 21397 1 1903412 0 73 0 762 1 2423 82982 genus 2 Obesumbacterium 1661 82983 0 1 Obesumbacterium proteus species 3 Hafnia genus 98 0 568 2845 1 0 569 1979 Hafnia alvei 1 species no rank 1 0 2621980 768 0 768 1848580 1 Hafnia sp. CBA7124 species 1207 0 1 16056 635 8 Edwardsiella genus Edwardsiella hoshinae 1 species 1136 93378 0 1 Edwardsiella anguillarum species 0 1664 1821960 2676541 3719 0 2 no rank 1578828 2083 0 species 1 Edwardsiella sp. EA181011 1650654 1636 0 species 1 Edwardsiella sp. LADL05-105 0 636 4095 species Edwardsiella tarda 1 1263550 2500 0 Edwardsiella piscicida 1 species Edwardsiella ictaluri 1 species 1735 67780 0 Cellvibrionales 29 order 108 0 15735 1 1706369 1706373 4466 1 42 0 Microbulbiferaceae 5 family 0 42 48073 4424 1 genus Microbulbifer 4 species Microbulbifer aggregans 1 0 1769779 1632 species Microbulbifer thermotolerans 1 1253 252514 0 260552 1497 0 species 1 Microbulbifer agarilyticus 4 Halieaceae family 1706372 1 2093 31 0 3 Halioglobus genus 2062 1 1217416 22 0 species Halioglobus japonicus 1 0 1044 930805 996 930806 0 Halioglobus pacificus 1 species 1706375 1 1759 0 11 family 7 Spongiibacteraceae genus Oceanicoccus 2 0 10 1084558 1 622 species Oceanicoccus sagamiensis 1 0 716816 612 Spongiibacter 2 genus 8 0 1 437 630749 0 2631504 429 1 no rank 429 1620392 0 Spongiibacter sp. IMCC21906 1 species 0 14 1434050 689 1 genus 2 Zhongshania 1 Zhongshania aliphaticivorans species 0 675 1470434 45 0 1 7309 1706371 12 Cellvibrionaceae family 11 0 1310 1 447467 Simiduia 2 genus 1299 447471 0 species 1 Simiduia agarivorans genus 1 523 316625 0 0 523 86304 1 Saccharophagus degradans species Teredinibacter 2 genus 859 1 2425 19 0 Teredinibacter turnerae 1 species 0 2426 840 3789 1 10 39 0 4 Cellvibrio genus no rank 2 2624793 2489 0 0 1598 1987723 1 Cellvibrio sp. PSBB006 species 0 1945512 891 Cellvibrio sp. PSBB023 1 species Cellvibrio japonicus 1 species 1261 155077 0 Agarilytica 2 genus 1 783 2036021 7 0 776 1737490 0 species Agarilytica rhodophyticola 1 Chromatiales 52 order 135613 1 48032 779 0 no rank 2 3091 451214 0 Thiohalobacter 2 genus 1 3091 1273155 61 0 0 585455 3030 species 1 Thiohalobacter thiocyanaticus family 3 Wenzhouxiangellaceae 1676141 1963 1 0 42 genus Wenzhouxiangella 2 0 57 1 1921 1676142 1864 1579979 0 1 Wenzhouxiangella marina species 0 262 17293 1 1046 family Chromatiaceae 18 0 82569 1937 no rank 1 species Chromatiaceae bacterium 2141T.STBD.0c.01a 1 1937 1978339 0 156885 1 1571 0 49 genus Thioflavicoccus 2 Thioflavicoccus mobilis 1 species 1522 80679 0 54 0 85076 2689 1 Marichromatium 2 genus 37487 2635 0 species 1 Marichromatium purpuratum Thiodictyon 2 genus 53392 1 4147 25 0 species Candidatus Thiodictyon syntrophicum 1 4122 1166950 0 0 60 13724 1 2509 genus Thiocystis 2 species 1 Thiocystis violascens 2449 73141 0 1277 1 1227 13 0 4 Nitrosococcus genus Nitrosococcus oceani 1 species 0 297 1229 species 1 Nitrosococcus watsonii 0 473531 480 species 1 Nitrosococcus halophilus 0 133539 487 0 20 85072 1 2615 genus Allochromatium 2 1 Allochromatium vinosum species 0 2595 1049 286 1 1980513 5 0 2 Candidatus Nitrosoglobus genus species Candidatus Nitrosoglobus terrae 1 0 281 1630141 18 Ectothiorhodospiraceae family 254 0 72276 1 20484 6 Thioalkalivibrio genus 216 0 1 10936 106633 1 Thioalkalivibrio paradoxus species 0 108010 1853 species Thioalkalivibrio versutus 1 0 2164 106634 species Thioalkalivibrio sulfidiphilus 1 0 1033854 3618 1 no rank 2621013 1321 0 396595 1321 0 1 Thioalkalivibrio sp. K90mix species species Thioalkalivibrio nitratireducens 1 0 186931 1764 0 19 1 2219 133193 genus Alkalilimnicola 2 species 1 Alkalilimnicola ehrlichii 0 2200 351052 1999 1 1051 0 19 genus 2 Ectothiorhodospira 0 2684909 1980 1 no rank 1 Ectothiorhodospira sp. BSL-9 species 0 1980 1442136 Halorhodospira 2 genus 85108 1 2151 21 0 1 Halorhodospira halophila species 0 1053 2130 2 Acidihalobacter genus 1765964 1 1396 9 0 Acidihalobacter prosperus 1 species 1387 160660 0 1335745 1529 1 19 0 3 Spiribacter genus 986 1335757 0 Spiribacter curvatus 1 species 524 1335746 0 species 1 Spiribacter salinus 0 5 1738654 1 896 family 3 Woeseiaceae 1738655 1 891 0 17 genus 2 Woeseia 0 1548547 874 species 1 Woeseia oceani Halothiobacillaceae 4 family 34 0 1 2089 255526 genus Halothiobacillus 3 1 2055 109262 0 87 1 no rank 0 2636392 1164 species Halothiobacillus sp. LS2 1 0 1164 1860122 Halothiobacillus neapolitanus 1 species 0 927 804 Granulosicoccaceae 3 family 1437 1 449719 4 0 437504 1433 1 1 0 2 Granulosicoccus genus 437505 1432 0 1 Granulosicoccus antarcticus species 1 0 1 380 135615 3 Cardiobacteriales order 379 868 0 2 family 869 1 379 1 0 Dichelobacter 2 genus 870 378 0 Dichelobacter nodosus 1 species order 4 Immundisolibacterales 0 50 3430 1 1934945 80 0 1 3380 1934946 Immundisolibacteraceae 3 family 1 3300 1934947 0 45 genus 2 Immundisolibacter 1 Immundisolibacter cernigliae species 1810504 3255 0 0 1 1 1327 1240482 order Orbales 6 1240483 1 1326 0 10 family Orbaceae 5 2 Frischella genus 553 1 1335631 1 0 species 1 Frischella perrara 1267021 552 0 2 Gilliamella genus 2 0 1 763 1193503 species Gilliamella apicola 1 761 1196095 0 391 0 135624 69321 1 Aeromonadales 29 order family 28 Aeromonadaceae 0 797 84642 1 68930 43947 1 1353 0 13 genus 2 Tolumonas 1340 43948 0 species 1 Tolumonas auensis 0 29 129577 3191 1 genus Oceanimonas 2 0 2636315 3162 1 no rank 1 Oceanimonas sp. GK1 species 0 511062 3162 0 45 347533 1 4222 genus Zobellella 2 347534 4177 0 species 1 Zobellella denitrificans genus 18 Aeromonas 642 1 58440 0 3850 species Aeromonas hydrophila 1 13009 644 0 Aeromonas rivipollensis 1 species 948519 2771 0 species 1 Aeromonas salmonicida 645 4784 0 species Aeromonas veronii 1 5238 654 0 species 1 Aeromonas schubertii 2477 652 0 1843 648 0 species 1 Aeromonas caviae 8 no rank 0 16985 257493 species Aeromonas sp. CA23 1 0 2033032 2830 0 1636607 1917 species Aeromonas sp. ASNIH2 1 2636 1636609 0 Aeromonas sp. ASNIH4 1 species species Aeromonas sp. ASNIH3 1 0 1636608 1854 1758179 2188 0 species Aeromonas sp. ASNIH5 1 2033033 1890 0 species Aeromonas sp. CU5 1 2035 1636606 0 1 Aeromonas sp. ASNIH1 species 1635 1920107 0 1 Aeromonas sp. ASNIH7 species species 1 Aeromonas aquatica 0 558964 2546 species 1 Aeromonas media 0 2633 651 1 Aeromonas dhakensis species 196024 2304 0 927 1 225143 0 4 genus Oceanisphaera 3 282 1903694 0 1 Oceanisphaera sp. AMac2203 species 0 641 1416627 species 1 Oceanisphaera profunda 135625 1 65515 19 0 33 Pasteurellales order family Pasteurellaceae 32 0 478 65496 1 712 1 0 1 1264 2094023 2 Glaesserella genus 1263 738 0 Glaesserella parasuis 1 species 745 2900 1 4 0 Pasteurella 3 genus 1 Pasteurella dagmatis species 0 841 754 1 Pasteurella multocida species 747 2055 0 Basfia 2 genus 697331 859 1 3 0 856 157673 0 1 [Mannheimia] succiniciproducens species 1 2720 75984 36 0 4 Mannheimia genus 1 no rank 729 2645054 0 1432056 729 0 Mannheimia sp. USDA-ARS-USMARC-1261 1 species 1 Mannheimia varigena species 0 1116 85404 0 839 75985 Mannheimia haemolytica 1 species 0 32 4030 1 713 genus Actinobacillus 5 716 775 0 Actinobacillus suis 1 species 755 67854 0 1 Actinobacillus succinogenes species Actinobacillus equuli 1 species 0 952 718 715 1516 0 Actinobacillus pleuropneumoniae 1 species 0 1 214906 989 1 genus Histophilus 2 0 988 731 Histophilus somni 1 species 416916 1 3080 0 13 genus 3 Aggregatibacter 1 Aggregatibacter aphrophilus species 732 1803 0 0 714 1264 1 Aggregatibacter actinomycetemcomitans species 0 42 47344 1 724 genus Haemophilus 6 730 708 0 species 1 [Haemophilus] ducreyi Haemophilus influenzae 1 species 0 4028 727 no rank 1 2609962 1668 0 Haemophilus sp. oral taxon 036 1 species 712310 1668 0 0 2973 249188 1 Haemophilus pittmaniae species species 1 Haemophilus parainfluenzae 0 729 37925 155493 637 1 0 1 genus 2 Gallibacterium 1 Gallibacterium anatis species 0 750 636 1 1195 476528 3 0 Bibersteinia 2 genus 0 47735 1192 species 1 Bibersteinia trehalosi 1416 0 1 687215 28216 Betaproteobacteria 353 class 0 7061 1 562156 80840 order Burkholderiales 236 80841 2358 0 2 no rank species 1 Burkholderiales bacterium GJ-E10 0 1291 1469502 1067 1834205 0 species 1 Burkholderiales bacterium YL45 32666 224471 0 17 no rank 28067 4889 1 129 0 Rubrivivax 2 genus 28068 4760 0 1 Rubrivivax gelatinosus species 88 1 3709 0 138 genus Leptothrix 2 species 1 Leptothrix cholodnii 3571 34029 0 genus Methylibium 2 316612 1 2968 0 78 1 Methylibium petroleiphilum species 0 105560 2890 species 1 [Polyangium] brachysporum 2812 413882 0 0 98 1 2669 318147 genus 2 Paucibacter no rank 1 0 2571 2642959 1 Paucibacter sp. KCTC 42545 species 1768242 2571 0 117 0 32012 4437 1 Thiomonas 2 genus 926 4320 0 1 Thiomonas intermedia species genus Mitsuaria 2 3802 1 65047 0 116 1 no rank 0 2648776 3686 1 Mitsuaria sp. 7 species 3686 1658665 0 124 0 3739 1 93681 Roseateles 2 genus 1 Roseateles depolymerans species 76731 3615 0 genus 2 Rhizobacter 0 74 212743 1 3641 species Rhizobacter gummiphilus 1 3567 946333 0 1 211638 119060 1669 0 84 Burkholderiaceae family 0 4953 1 104488 32008 genus 41 Burkholderia 0 337 4794 Burkholderia glumae 1 species 19 species group 52844 87882 0 species Burkholderia ambifaria 1 0 152480 1849 Burkholderia diffusa 1 species 0 488732 1096 species 1 Burkholderia multivorans 4198 87883 0 Burkholderia ubonensis 1 species 0 5223 101571 Burkholderia seminalis 1 species 488731 1433 0 8221 95486 0 1 Burkholderia cenocepacia species 3097 482957 0 Burkholderia lata 1 species 0 1503055 1073 1 Burkholderia territorii species 1565 265293 0 species [Pseudomonas] mesoacidophila 1 0 1207504 1660 species 1 Burkholderia pseudomultivorans 1379 488446 0 species Burkholderia latens 1 species Burkholderia metallica 1 488729 1739 0 0 1724 488447 Burkholderia contaminans 1 species 0 2592 60552 1 Burkholderia vietnamiensis species species Burkholderia stagnalis 1 1824 1503054 0 species Burkholderia cepacia 1 0 292 9017 1 Burkholderia pyrrocinia species 0 60550 1076 species Burkholderia dolosa 1 1468 152500 0 0 95485 2610 species Burkholderia stabilis 1 no rank 11 2613784 19220 0 species Burkholderia sp. PAMC 28687 1 1755 1795874 0 0 2040 758796 species 1 Burkholderia sp. RPE67 1 Burkholderia sp. PAMC 26561 species 1795043 1459 0 species 1 Burkholderia sp. 2002721687 1468409 1311 0 species Burkholderia sp. Bp7605 1 0 1621 1740163 640510 2172 0 1 Burkholderia sp. CCGE1001 species 0 1893 640512 species 1 Burkholderia sp. CCGE1003 0 1740162 1234 Burkholderia sp. Bp5365 1 species 1678678 2102 0 species Burkholderia sp. HB1 1 Burkholderia sp. KJ006 1 species 0 1268 416344 0 1097668 2365 species 1 Burkholderia sp. YI23 111527 14421 0 7 species group 0 1430 13373 Burkholderia mallei 1 species species Burkholderia thailandensis 1 0 3726 57975 1 Burkholderia sp. MSMB617WGS species 0 1637831 1291 species Burkholderia sp. MSMB0852 1 0 1637841 1079 species Burkholderia sp. MSMB0266 1 1168 1637837 0 species Burkholderia pseudomallei 1 0 3968 28450 342113 1759 0 Burkholderia oklahomensis 1 species 1 Burkholderia gladioli species 0 28095 5243 0 3013 41899 Burkholderia plantarii 1 species 579 0 1 24535 48736 5 Ralstonia genus 11340 305 0 species 1 Ralstonia solanacearum 329 5645 0 species 1 Ralstonia pickettii Ralstonia insidiosa 1 species 0 190721 3465 Ralstonia mannitolilytica 1 species 0 3506 105219 0 328 93217 16697 1 genus Pandoraea 10 0 93219 1662 Pandoraea norimbergensis 1 species Pandoraea pulmonicola 1 species 0 93221 2046 656178 2226 0 Pandoraea vervacti 1 species 0 93222 1773 species Pandoraea sputorum 1 0 1722 656179 species 1 Pandoraea faecigallinarum Pandoraea thiooxydans 1 species 0 445709 1420 93220 1961 0 species Pandoraea pnomenusa 1 1 Pandoraea apista species 0 93218 1702 1857 573737 0 Pandoraea oxalativorans 1 species 0 3 1 998 44013 genus Polynucleobacter 4 0 576611 392 1 Polynucleobacter asymbioticus species Polynucleobacter necessarius 1 species 0 576610 255 1835254 348 0 1 Polynucleobacter duraquae species 0 927 106589 1 32134 genus Cupriavidus 9 106590 6476 0 Cupriavidus necator 1 species 0 367825 3706 species 1 Cupriavidus sp. USMAA1020 species Cupriavidus metallidurans 1 3183 119219 0 0 3025 248026 Cupriavidus pinatubonensis 1 species Cupriavidus basilensis 1 species 3429 68895 0 82541 3180 0 1 Cupriavidus gilardii species 0 2640874 8208 2 no rank species 1 Cupriavidus sp. USMAHM13 0 1389192 3878 Cupriavidus sp. USMAA2-4 1 species 0 4330 876364 0 1827195 2367 genus 1 species 1 Burkholderia sp. RPE64 0 758793 2367 1822464 27972 1 0 465 genus 12 Paraburkholderia 0 75105 3939 species 1 Paraburkholderia caribensis 2026199 3207 0 species Paraburkholderia aromaticivorans 1 0 2152 148447 species 1 Paraburkholderia phymatum 2453 169430 0 Paraburkholderia hospita 1 species Paraburkholderia sprentiae 1 species 948107 2447 0 261302 2330 0 species Paraburkholderia phytofirmans 1 Paraburkholderia xenovorans 1 species 2839 36873 0 1 no rank 2615204 1670 0 0 1926494 1670 species Paraburkholderia sp. SOS3 1 0 311230 2067 species 1 Paraburkholderia terrae 134537 2266 0 Paraburkholderia fungorum 1 species 2137 252970 0 species 1 Paraburkholderia phenoliruptrix 0 2571159 778 genus 1 species 1 Paraburkholderia rhizoxinica 412963 778 0 44 Alcaligenaceae family 1 104349 506 952 0 Castellaniella 2 genus 359336 3534 1 98 0 0 3436 75697 species 1 Castellaniella defragrans 517 49281 1 1831 0 Bordetella 17 genus species 1 Bordetella bronchialis 3146 463025 0 103855 3199 0 Bordetella hinzii 1 species 1 no rank 3416 2630031 0 species Bordetella sp. H567 1 0 3416 1697043 species 1 Bordetella genomosp. 6 2866 463024 0 3521 463014 0 Bordetella flabilis 1 species 0 2100 520 species 1 Bordetella pertussis species 1 Bordetella holmesii 1289 35814 0 species 1 Bordetella pseudohinzii 1331258 2882 0 species Bordetella trematum 1 0 2576 123899 1439 521 0 species Bordetella avium 1 0 3494 463040 species Bordetella genomosp. 13 1 0 5545 518 species 1 Bordetella bronchiseptica species 1 Bordetella genomosp. 9 2692 1416803 0 species Bordetella genomosp. 8 1 3366 1416806 0 519 3241 0 species Bordetella parapertussis 1 2678 94624 0 1 Bordetella petrii species genus 3 Taylorella 641 1 29574 0 8 0 29575 339 1 Taylorella equigenitalis species 294 84590 0 species Taylorella asinigenitalis 1 Orrella 2 genus 68 0 1921582 1 4259 species 1 Orrella dioscoreae 0 4191 1851544 23 0 1 2062 290425 Advenella 3 genus species Advenella mimigardefordensis 1 1258 302406 0 Advenella kashmirensis 1 species 0 310575 781 0 3 1100891 394 1 genus Paenalcaligenes 2 Paenalcaligenes hominis 1 species 0 391 643674 genus Alcaligenes 2 0 16 507 2905 1 Alcaligenes faecalis 1 species 0 511 2889 2 Oligella genus 90243 1 608 2 0 0 90245 606 species 1 Oligella urethralis 403 1 1472344 0 3 genus Basilea 2 1 Basilea psittacipulmonis species 0 1472345 400 22 0 1277 1 305976 Pusillimonas 2 genus 1255 2640016 0 no rank 1 0 1255 1007105 species 1 Pusillimonas sp. T7-7 genus 6 Achromobacter 0 1488 222 1 38033 0 2626865 3834 1 no rank 3834 1758194 0 1 Achromobacter sp. AONIH1 species 0 85698 15433 species Achromobacter xylosoxidans 1 217203 6350 0 Achromobacter spanius 1 species 3165 217204 0 species 1 Achromobacter insolitus 0 32002 7763 species 1 Achromobacter denitrificans family 59 Comamonadaceae 0 2325 1 140718 80864 1 2568 364316 0 23 genus 2 Verminephrobacter species 1 Verminephrobacter eiseniae 0 364317 2545 38 0 1 5333 219181 3 Ottowia genus 2109914 2806 0 1 Ottowia sp. KADR8-3 species 1 no rank 0 2645081 2489 1658672 2489 0 1 Ottowia sp. oral taxon 894 species 28065 10289 1 124 0 Rhodoferax 5 genus species 1 Rhodoferax koreense 1842727 3369 0 1 Rhodoferax ferrireducens species 192843 1930 0 1 Rhodoferax saidenbachensis species 0 1484693 2736 species Rhodoferax antarcticus 1 2130 81479 0 1 1977 665874 0 17 genus 3 Limnohabitans no rank 2 0 1960 2626134 0 1678129 547 species 1 Limnohabitans sp. 103DPR2 1413 1678128 0 species 1 Limnohabitans sp. 63ED37-2 137 0 8666 1 47420 4 Hydrogenophaga genus 2 no rank 0 2610897 6773 795665 3665 0 Hydrogenophaga sp. PBC 1 species species 1 Hydrogenophaga sp. RAC07 3108 1842537 0 0 1756 1763535 species 1 Hydrogenophaga crassostreae 0 7 1 1309 1436289 genus 2 Candidatus Symbiobacter 1302 1436290 0 species Candidatus Symbiobacter mobilis 1 283 12440 1 0 99 genus Comamonas 4 0 2998 1082851 species Comamonas serinivorans 1 4023 225992 0 1 Comamonas kerstersii species species Comamonas testosteroni 1 0 285 5320 genus Simplicispira 2 0 16 2437 1 352450 2109915 2421 0 species 1 Simplicispira sp. SC1-8 genus 5 Variovorax 34072 20592 1 0 494 663243 6581 0 2 no rank Variovorax sp. PMC12 1 species 2126319 4867 0 0 1714 1795631 Variovorax sp. PAMC 28711 1 species 8750 34073 0 Variovorax paradoxus 1 species Variovorax boronicumulans 1 species 436515 4767 0 2718 1 238749 24 0 2 Diaphorobacter genus 1546149 2694 0 species Diaphorobacter polyhydroxybutyrativorans 1 0 16 201096 3886 1 genus 2 Alicycliphilus species Alicycliphilus denitrificans 1 179636 3870 0 Polaromonas 3 genus 52972 1 5348 58 0 no rank 1 0 2638319 2502 1 Polaromonas sp. JS666 species 2502 296591 0 0 216465 2788 species 1 Polaromonas naphthalenivorans Delftia 5 genus 835 0 18476 1 80865 no rank 2 8683 2613839 0 species 1 Delftia sp. HK171 1920191 4303 0 742013 4380 0 species 1 Delftia sp. Cs1-4 species 1 Delftia tsuruhatensis 180282 4550 0 1 Delftia acidovorans species 0 80866 4408 1 3376 1649468 139 0 2 Melaminivora genus 0 2641902 3237 1 no rank 1 Melaminivora sp. SC2-9 species 0 3237 2109913 12916 24035 1 0 1229 genus 9 Acidovorax 0 3196 80867 species 1 Acidovorax avenae 2460 721785 0 Acidovorax ebreus 1 species no rank 4 11139 2684926 0 358220 3464 0 species Acidovorax sp. KKS102 1 Acidovorax sp. JS42 1 species 0 2475 232721 0 2512 1858609 species 1 Acidovorax sp. T1 2688 1842533 0 Acidovorax sp. RAC01 1 species 0 2801 553814 1 Acidovorax sp. NA3 species 0 3210 80869 1 Acidovorax citrulli species genus 2 2490452 4188 0 1 Comamonadaceae bacterium A1 species 0 1458425 2162 0 1458426 2026 species Comamonadaceae bacterium B1 1 0 2678886 3216 1 genus species 1 Melaminivora sp. SC2-7 0 2116657 3216 45 0 174951 7539 1 Ramlibacter 2 genus species Ramlibacter tataouinensis 1 94132 7494 0 29 Oxalobacteraceae family 491 0 1 63366 75682 genus 4 Collimonas 0 303 1 9938 202907 2755 279113 0 species Collimonas pratensis 1 0 3797 158899 1 Collimonas fungivorans species species Collimonas arenae 1 279058 3083 0 3 Herminiimonas genus 303379 1 1256 12 0 1809410 524 0 1 Herminiimonas arsenitoxidans species 204773 720 0 species Herminiimonas arsenicoxydans 1 2 Oxalobacter genus 1 1322 846 3 0 0 847 1319 species 1 Oxalobacter formigenes 20334 1 149698 0 571 genus 6 Massilia 0 2609279 8187 2 no rank species 1 Massilia sp. WG5 1707785 3916 0 0 1678028 4271 species Massilia sp. NR 4-1 1 1 Massilia sp. ZMN-3 species 0 4619 2072590 species 1 Massilia sp. B2 0 2045208 2991 species Massilia putida 1 1141883 3966 0 29580 13648 1 208 0 7 Janthinobacterium genus no rank 4 0 8511 2610881 Janthinobacterium sp. B9-8 1 species 768 1236179 0 species Janthinobacterium sp. LM6 1 3251 1938606 0 0 967 375286 species Janthinobacterium sp. Marseille 1 species Janthinobacterium sp. 1_2014MBL_MicDiv 1 0 3525 1644131 Janthinobacterium agaricidamnosum 1 species 0 55508 2178 species 1 Janthinobacterium svalbardensis 368607 2751 0 genus Herbaspirillum 6 0 766 1 16377 963 4514 92645 0 Herbaspirillum frisingense 1 species 1 Herbaspirillum seropedicae species 964 4081 0 species 1 Herbaspirillum rubrisubalbicans 2963 80842 0 2346 341045 0 species 1 Herbaspirillum hiltneri no rank 1 0 2624150 1707 1707 2025949 0 1 Herbaspirillum sp. meg3 species 206 0 24718 1 32003 44 Nitrosomonadales order 5 Gallionellaceae family 1 3020 90627 52 0 1 1957 314343 0 23 genus 2 Sideroxydans species 1 Sideroxydans lithotrophicus 0 63745 1934 Gallionella 2 genus 8 0 1011 1 96 370405 1003 0 Gallionella capsiferriformans 1 species 37 0 206379 1 6161 Nitrosomonadaceae 12 family 10 0 35798 1 2191 4 Nitrosospira genus Nitrosospira lacus 1 species 1288494 752 0 Nitrosospira multiformis 1 species 622 1231 0 807 35799 0 Nitrosospira briensis 1 species genus 7 Nitrosomonas 0 20 3933 1 914 Nitrosomonas europaea 1 species 658 915 0 0 591 916 Nitrosomonas eutropha 1 species 44574 701 0 1 Nitrosomonas communis species species Nitrosomonas ureae 1 0 44577 795 2609265 1168 0 no rank 2 species Nitrosomonas sp. Is79A3 1 0 261292 584 0 153948 584 Nitrosomonas sp. AL212 1 species family 14 Methylophilaceae 32011 5551 1 0 54 2 Methylophilus genus 1 0 16 1 511 1 no rank 2630143 510 0 species Methylophilus sp. TWE2 1 510 1662285 0 genus 3 Candidatus Methylopumilus 0 1 1679002 1 538 0 273 1581680 species 1 Candidatus Methylopumilus turicensis 1581557 264 0 species Candidatus Methylopumilus planktonicus 1 0 18 404 1 1029 genus 2 Methylobacillus 1011 405 0 1 Methylobacillus flagellatus species 0 9 359407 674 1 genus 3 Methylotenera 1 Methylotenera versatilis species 0 385 1055487 359408 280 0 species Methylotenera mobilis 1 3 Methylovorus genus 1 2745 81682 46 0 2634027 1439 0 1 no rank species Methylovorus sp. MP688 1 0 1439 887061 266009 1260 0 species Methylovorus glucosotrophus 1 Thiobacillaceae 3 family 1 2003 2008790 45 0 2 Thiobacillus genus 919 1 1958 19 0 species Thiobacillus denitrificans 1 0 36861 1939 family 4 0 2981 2772226 0 36 1314 1 935200 genus 2 Sulfuricella 1278 649841 0 species 1 Sulfuricella denitrificans 34 0 1667 1 1778653 Sulfuriferula 2 genus 1 no rank 0 1633 2637784 species Sulfuriferula sp. AH1 1 0 1985873 1633 0 95 2008793 1 4796 family 5 Sterolibacteriaceae Sulfuritalea 2 genus 1054211 1 2281 58 0 Sulfuritalea hydrogenivorans 1 species 0 2223 748811 2420 1 378210 36 0 Methyloversatilis 2 genus 1 no rank 2639971 2384 0 species 1 Methyloversatilis sp. RAC08 1842540 2384 0 206389 1 37085 0 776 order 22 Rhodocyclales 3 Azonexaceae family 2008795 1 2302 57 0 2 Dechloromonas genus 73029 2245 1 12 0 259537 2233 0 species Dechloromonas aromatica 1 75787 1 7712 0 230 family 6 Rhodocyclaceae 42 0 1 1974 551759 Aromatoleum 2 genus Aromatoleum aromaticum 1 species 0 551760 1932 75788 1440 0 1 no rank Rhodocyclaceae bacterium 1 species 1898103 1440 0 4068 1 146937 96 0 2 Azospira genus species 1 Azospira oryzae 3972 146939 0 12 Zoogloeaceae family 1 26295 2008794 816 0 genus Azoarcus 5 1 11695 12960 0 609 1 Azoarcus sp. SY39 species 0 2067960 2612 2 no rank 0 5818 2629479 2795 198107 0 Azoarcus sp. CIB 1 species Azoarcus sp. KH32C 1 species 0 3023 748247 418699 2656 0 species Azoarcus olearius 1 33057 13784 1 0 485 genus Thauera 6 2609274 6904 0 no rank 2 2005884 3561 0 Thauera sp. K11 1 species species Thauera sp. MZ1T 1 0 85643 3343 0 1766 96773 species 1 Thauera chlorobenzoica species Thauera humireducens 1 1134435 2624 0 0 2005 59405 species Thauera aromatica 1 no rank 2 0 33809 2446 2040 1904640 0 1 Betaproteobacteria bacterium GR16-43 species 1 beta proteobacterium CB species 543913 406 0 12 no rank 119066 4064 0 0 115 1301080 1 genus 0 1160784 115 1 Candidatus Nasuia deltocephalinicola species 1606 1 33055 0 15 genus 6 Kinetoplastibacterium Candidatus Kinetoplastibacterium desouzaii 1 species 420 994692 0 Candidatus Kinetoplastibacterium galatii 1 species 0 370 994695 0 304 33056 1 Candidatus Kinetoplastibacterium crithidii species 1 Candidatus Kinetoplastibacterium oncopeltii species 253 994696 0 233181 244 0 1 Kinetoplastibacterium blastocrithidii species 1 genus 0 189384 31 189385 31 0 species Candidatus Tremblaya princeps 1 2 Candidatus Profftella genus 1 0 1381133 1 223 species Candidatus Profftella armatura 1 222 669502 0 38 0 2089 1 327159 Candidatus Accumulibacter 2 genus 0 2051 327160 Candidatus Accumulibacter phosphatis 1 species order Neisseriales 36 1 55330 206351 0 686 26931 1 481 0 345 family Neisseriaceae 22 0 15 538 1630 1 genus 2 Eikenella 1 Eikenella corrodens species 0 539 1615 836 1193515 0 1 genus 1196083 836 0 species 1 Snodgrassella alvi 574 421605 0 1 no rank species Neisseriaceae bacterium DSM 100970 1 0 574 2052837 1 20683 482 601 0 Neisseria 12 genus 0 1269 485 species Neisseria gonorrhoeae 1 0 1363 495 species Neisseria elongata 1 1577 1853278 0 species Neisseria sp. 10023 1 species 1 Neisseria meningitidis 487 4662 0 Neisseria lactamica 1 species 486 2080 0 1 Neisseria mucosa species 0 488 1536 1 Neisseria zoodegmatis species 1095 326523 0 1681 490 0 species Neisseria sicca 1 3704 2623750 0 2 no rank 0 997 1853276 species 1 Neisseria sp. 10022 0 2707 655307 species Neisseria sp. KEM232 1 species 1 Neisseria weaveri 0 1115 28091 genus Vitreoscilla 3 59 2506 1 0 75 1 no rank 0 2627922 427 96942 427 0 Vitreoscilla sp. C1 1 species Vitreoscilla filiformis 1 species 63 2004 0 2 Simonsiella genus 357 1 71 1 0 0 72 356 1 Simonsiella muelleri species Chromobacteriaceae 13 family 1499392 1 27713 445 0 4 no rank 0 15548 90153 Chromobacterium 4 genus 364 0 15548 1 535 no rank 1 4394 2641838 0 species Chromobacterium sp. ATCC 53434 1 4394 2059672 0 1 Chromobacterium violaceum species 4726 536 0 species Chromobacterium vaccinii 1 1108595 6064 0 genus 2 Jeongeupia 0 95 885864 2582 1 1 no rank 0 2619593 2487 0 2487 1906741 1 Jeongeupia sp. USM3 species 3237 1 568394 0 117 genus 2 Pseudogulbenkiania 0 3120 2642558 no rank 1 species Pseudogulbenkiania sp. NH8B 1 0 748280 3120 genus 2 Laribacter 0 100 168470 3223 1 168471 3123 0 Laribacter hongkongensis 1 species 187 1 2678 8 0 2 Aquaspirillum genus no rank 1 0 2620219 2670 1 Aquaspirillum sp. LM1 species 0 2670 1938604 0 2 1 4763 1553900 class Oligoflexia 12 1 3448 213481 16 0 5 Bdellovibrionales order family Bdellovibrionaceae 4 213483 3432 1 0 10 Bdellovibrio 3 genus 11 0 3422 1 958 959 3081 0 species 1 Bdellovibrio bacteriovorus species Bdellovibrio exovorus 1 453816 330 0 Bacteriovoracales 6 order 34 0 1 1313 2024979 0 1652132 655 2 family 2 Halobacteriovorax genus 1652133 1 655 3 0 species Halobacteriovorax marinus 1 0 652 97084 1 624 263369 0 5 family 3 Bacteriovoracaceae Bacteriovorax 2 genus 31 0 146784 619 1 960 588 0 1 Bacteriovorax stolpii species 580370 1 2244 2 0 6 Zetaproteobacteria class order 5 Mariprofundales 2242 1 580371 0 21 580372 2221 1 0 20 family Mariprofundaceae 4 0 12 377315 2201 1 genus 3 Mariprofundus 0 1033 1921086 species 1 Mariprofundus aestuarium Mariprofundus ferrinatatus 1 species 0 1921087 1156 phylum 58 203691 79407 0 class Spirochaetia 58 0 199 1 79407 203692 1643688 6142 0 9 order 170 6142 1 0 11 family 9 Leptospiraceae 171 4906 1 74 0 Leptospira 6 genus 0 173 1494 1 Leptospira interrogans species 0 28452 815 species Leptospira alstonii 1 563 172 0 Leptospira biflexa 1 species 174 1038 0 Leptospira borgpetersenii 1 species species 1 Leptospira santarosai 28183 922 0 1225 1 338321 3 0 Turneriella 2 genus Turneriella parva 1 species 29510 1222 0 Spirochaetales 41 order 2143 0 136 1 60909 family Borreliaceae 17 1 6666 1643685 0 5 64895 1 3376 0 111 genus 8 Borreliella Borrelia mayonii 1 species 0 1674146 332 Borreliella burgdorferi 1 species 0 491 139 1 Borreliella bissettii species 537 64897 0 Borreliella garinii 1 species 29519 723 0 0 664662 340 species Borreliella bavariensis 1 0 372 62088 species Borreliella valaisiana 1 470 29518 0 species 1 Borreliella afzelii 3285 1 138 0 59 genus 8 Borrelia 0 711 47466 1 Borrelia miyamotoi species 1 Borrelia parkeri species 0 408 141 species 1 Borrelia hermsii 0 384 140 0 44449 486 species Borrelia recurrentis 1 142 433 0 species Borrelia turicatae 1 0 457 40834 1 Borrelia duttonii species 1 Borrelia anserina species 143 347 0 52100 1 137 0 742 family Spirochaetaceae 23 0 403 157 36705 1 genus Treponema 12 0 3929 81028 species 1 Treponema brennaborense 1 Treponema pedis species 409322 1262 0 0 5039 2638727 1 no rank 5039 1539298 0 Treponema sp. OMZ 838 1 species 241 160 0 1 Treponema pallidum species Treponema denticola 1 species 3155 158 0 species 1 Treponema succinifaciens 167 9827 0 221027 6308 0 species Treponema putidum 1 1290 215591 0 species Treponema caldarium 1 236 53435 0 species Treponema paraluiscuniculi 1 2179 88058 0 species 1 Treponema primitia species 1 Treponema azotonutricium 0 150829 2836 0 27 1 5700 399320 genus Sphaerochaeta 4 Sphaerochaeta pleomorpha 1 species 0 1480 1131707 2635 1131703 0 species 1 Sphaerochaeta globosa Sphaerochaeta coccoides 1 species 273376 1558 0 0 2247 1911556 genus 1 55206 2247 0 1 Sediminispirochaeta smaragdinae species 0 2 1616789 1 1518 genus Salinispira 2 1 Salinispira pacifica species 0 1307761 1516 0 18 146 5188 1 genus Spirochaeta 3 154 3244 0 species 1 Spirochaeta thermophila species 1 Spirochaeta africana 46355 1926 0 0 7 1 12157 1643686 order 7 Brachyspirales family 6 Brachyspiraceae 0 856 1 12150 143786 5 Brachyspira genus 29521 1 11294 729 0 Brachyspira murdochii 1 species 0 84378 1670 159 2325 0 1 Brachyspira hyodysenteriae species species Brachyspira pilosicoli 1 0 4754 52584 0 1816 84377 species 1 Brachyspira intermedia phylum 25 0 51757 32066 class 25 Fusobacteriia 1 51757 203490 0 44 0 62 203491 1 51713 order Fusobacteriales 24 0 105 1 37617 203492 family 12 Fusobacteriaceae 9 Fusobacterium genus 164 0 35580 1 848 Fusobacterium mortiferum 1 species 2417 850 0 0 859 1497 species 1 Fusobacterium necrophorum 0 3413 1583098 species Fusobacterium hwasookii 1 species 1 Fusobacterium ulcerans 3151 861 0 10822 851 0 species Fusobacterium nucleatum 1 species Fusobacterium varium 1 0 856 5388 0 860 6970 species Fusobacterium periodonticum 1 species 1 Fusobacterium gonidiaformans 0 1758 849 Ilyobacter 2 genus 7 0 1932 1 167639 species 1 Ilyobacter polytropus 0 1925 167642 11 Leptotrichiaceae family 1 14034 1129771 34 0 genus 5 Leptotrichia 0 8 32067 1 7270 3 no rank 5642 2633022 0 0 2520 712357 species Leptotrichia sp. oral taxon 212 1 species 1 Leptotrichia sp. oral taxon 847 1661 1785996 0 Leptotrichia sp. oral taxon 498 1 species 0 1461 712368 1620 40542 0 Leptotrichia buccalis 1 species 2 Sneathia genus 2052 1 168808 4 0 1 Sneathia amnii species 0 187101 2048 2632 1 32068 3 0 Sebaldella 2 genus 0 826 2629 Sebaldella termitidis 1 species genus 1 0 34104 2046 Streptobacillus moniliformis 1 species 34105 2046 0 3 phylum 0 435 2138240 3 Coprothermobacteria class 3 0 435 1 2138243 2 Coprothermobacterales order 2 0 2138246 432 1 1 family 0 2138247 430 1 genus 430 68335 0 1 Coprothermobacter proteolyticus species 0 430 35786 12 phylum 0 508458 29485 class 12 Synergistia 0 53 649775 1 29485 order 11 Synergistales 29432 1 649776 0 65 949 0 649777 29367 1 10 Synergistaceae family 595 1 49894 2 0 Acetomicrobium 2 genus species Acetomicrobium mobile 1 593 97477 0 0 11 508459 1 24936 genus 2 Cloacibacillus species Cloacibacillus porcorum 1 0 24925 1197717 81461 1 1314 0 11 genus 2 Thermanaerovibrio species 1 Thermanaerovibrio acidaminovorans 0 1303 81462 983 81466 0 genus 1 0 983 81468 1 Aminobacterium colombiense species 1 0 1 590 336260 Thermovirga 2 genus 0 336261 589 Thermovirga lienii 1 species 68297 2371 0 4 phylum 4 class 203486 2371 0 Dictyoglomales 4 order 4 0 203487 1 2371 family 3 2367 203488 0 0 2 13 2367 1 genus 3 Dictyoglomus 513050 1086 0 Dictyoglomus turgidum 1 species 1 Dictyoglomus thermophilum species 1279 14 0 10 phylum 200930 4220 0 class 10 Deferribacteres 0 7 68337 1 4220 Deferribacterales 9 order 191393 4213 1 21 0 0 40 1 4192 191394 family 8 Deferribacteraceae 1 0 545865 932 1 Calditerrivibrio 2 genus 0 931 477976 species 1 Calditerrivibrio nitroreducens 1015 117999 0 1 genus 0 1015 118000 species Denitrovibrio acetiphilus 1 genus 2 Deferribacter 0 2 1 1338 53572 1336 197162 0 species 1 Deferribacter desulfuricans Flexistipes 2 genus 1 867 2351 7 0 Flexistipes sinusarabici 1 species 2352 860 0 phylum 5 0 1930617 1951 Calditrichae 5 class 1 1951 1962850 26 0 1 1925 1962852 0 13 order Calditrichales 4 family 3 Calditrichaceae 1962854 1912 1 0 4 Caldithrix 2 genus 1 1908 187144 2 0 species 1 Caldithrix abyssi 0 1906 187145 phylum 9 0 1955 200940 class 9 Thermodesulfobacteria 0 6 67799 1 1955 3 0 188710 1 1949 8 Thermodesulfobacteriales order family 7 Thermodesulfobacteriaceae 0 7 1 1946 188711 324 444090 0 genus 1 species Caldimicrobium thiodismutans 1 324 1653476 0 0 1 1 700 241192 genus Thermodesulfatator 2 1 Thermodesulfatator indicus species 171695 699 0 1740 1 915 0 2 genus 3 Thermodesulfobacterium species Thermodesulfobacterium geofontis 1 1295609 568 0 1 Thermodesulfobacterium commune species 0 1741 345 3 no rank 994 2323 0 clade 3 1783234 994 0 phylum 1 95818 320 0 1895827 320 0 1 no rank 2056494 320 0 1 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 species 2 clade 0 674 95901 674 2497643 0 2 class 2 order 0 674 2497644 2 family 674 2497645 0 Candidatus Babela 2 genus 674 1 1551504 9 0 species 1 Candidatus Babela massiliensis 673862 665 0 phylum 13 0 40117 8613 8613 1 203693 36 0 Nitrospira 13 class Nitrospirales 12 order 189778 1 8577 92 0 family 11 Nitrospiraceae 1 8485 189779 0 59 1 genus 28261 1029 0 1 Thermodesulfovibrio yellowstonii species 0 1029 28262 Leptospirillum 4 genus 179 2112 1 10 0 1 species group 0 261385 760 species Leptospirillum sp. Group II 'CF-1' 1 760 1660083 0 species group 1 0 896 261386 Leptospirillum ferriphilum 1 species 0 178606 896 446 655606 0 1 species group 0 180 446 1 Leptospirillum ferrooxidans species 0 35 5285 1 1234 genus 5 Nitrospira species Candidatus Nitrospira inopinata 1 0 1715989 1301 1 Nitrospira japonica species 0 1325564 939 Nitrospira defluvii 1 species 0 330214 1272 0 42253 1738 1 Nitrospira moscoviensis species 5 clade 0 714 2498710 714 67814 0 phylum 5 class 5 Caldisericia 0 1 693071 714 1 Caldisericales 4 order 4 0 693072 713 1 3 Caldisericaceae family 693073 1 709 10 0 genus 2 Caldisericum 699 1 693074 0 6 693 693075 0 Caldisericum exile 1 species 1734 clade 0 13360255 1783272 0 89498 1798711 clade 154 154 Cyanobacteria phylum 89498 1 1117 30 0 1301283 18785 0 45 subclass 0 26 1118 10785 1 order 25 Chroococcales 1890450 1 4336 0 4 family 9 Aphanothecaceae 2 genus 0 28070 1607 1 species 0 2546356 755 strain 1 Cyanothece sp. PCC 7424 755 65393 0 0 2546359 852 species 1 1 Cyanothece sp. PCC 7822 strain 0 852 497965 0 92682 367 2 no rank 0 48 1 367 76023 genus 2 Halothece 0 319 2632878 no rank 1 1 Halothece sp. PCC 7418 species 0 319 65093 0 817 263510 genus 1 0 2546360 817 1 species 43989 817 0 strain 1 Cyanothece sp. ATCC 51142 2 genus 1161 2546365 0 1161 2546366 0 species 2 strain Cyanothece sp. PCC 8802 1 0 395962 581 strain 1 Cyanothece sp. PCC 8801 580 41431 0 genus 1 380 1453359 0 0 380 713887 Candidatus Atelocyanobacterium thalassa 1 species Cyanobacteriaceae 3 family 4 0 1 1103 1890452 0 2 102234 1 1099 genus Cyanobacterium 2 379064 1097 0 species 1 Cyanobacterium aponinum 23 0 1890449 1 1831 Microcystaceae 4 family genus Microcystis 3 1125 1 1808 0 69 0 1224 1126 species 1 Microcystis aeruginosa 0 2643300 515 no rank 1 515 1967666 0 1 Microcystis sp. MC19 species 3489 1 1890464 0 21 family 8 Chroococcaceae 669357 1 2102 9 0 3 Geminocystis genus 0 2625037 2093 no rank 2 1048 1617448 0 species 1 Geminocystis sp. NIES-3709 1615909 1045 0 Geminocystis sp. NIES-3708 1 species 102231 1 564 6 0 2 Gloeocapsa genus 0 558 2623012 no rank 1 0 1173026 558 species Gloeocapsa sp. PCC 7428 1 268175 1 802 0 8 genus 2 Chondrocystis 0 794 2648896 1 no rank species 1 Chondrocystis sp. NIES-4102 0 2005460 794 20 Oscillatoriales order 55 0 8000 1 1150 1892251 1 2305 15 0 3 Coleofasciculaceae family 2 Geitlerinema genus 1 2290 63132 10 0 1 no rank 2280 2648775 0 1173025 2280 0 Geitlerinema sp. PCC 7407 1 species family Gomontiellaceae 2 0 45 1 1031 1892255 1 genus 0 986 241421 species 1 Crinalium epipsammum 986 241425 0 14 0 1892254 2039 1 Oscillatoriaceae 6 family genus 2 Moorea 1155738 615 1 0 2 1155739 613 0 1 Moorea producens species genus Oscillatoria 3 0 3 1 1410 1158 1 Oscillatoria nigro-viridis species 0 812 482564 species Oscillatoria acuminata 1 595 118323 0 26 0 875 1 1892249 3 Cyanothecaceae family genus Cyanothece 2 0 79 849 1 43988 0 770 2649277 no rank 1 395961 770 0 1 Cyanothece sp. PCC 7425 species 1892252 1 1695 7 0 5 Microcoleaceae family 44471 607 1 0 5 genus 2 Microcoleus 2642155 602 0 1 no rank species Microcoleus sp. PCC 7113 1 1173027 602 0 1 1081 1205 0 1 genus Trichodesmium 2 Trichodesmium erythraeum 1 species 1206 1080 0 9 0 52604 1 2107 Pleurocapsales 7 order family 2 563 1890500 0 2 Pleurocapsa genus 44474 563 1 5 0 54308 558 0 1 Pleurocapsa minor species 0 9 1 1535 1890498 family 4 Dermocarpellaceae 1526 1 102115 0 50 genus Stanieria 3 0 102116 861 1 Stanieria cyanosphaera species 2642663 615 0 1 no rank species Stanieria sp. NIES-3757 1 0 1807358 615 0 1890505 707 3 order 1 707 1890528 6 0 3 Chroococcidiopsidaceae family Chroococcidiopsis 2 genus 4 0 54298 701 1 species Chroococcidiopsis thermalis 1 0 697 54299 6 Gloeobacteria class 49 0 307596 5342 1 0 73 307595 1 5293 order Gloeobacterales 5 family Gloeobacteraceae 4 0 31 1890422 1 5220 genus Gloeobacter 3 1 5189 33071 0 68 1 Gloeobacter violaceus species 2861 33072 0 1416614 2260 0 Gloeobacter kilaueensis 1 species 1 no rank 0 407 1983111 1 cyanobacterium endosymbiont of Epithemia turgida species 407 718217 0 order 34 Nostocales 18172 1 1161 0 50 1892263 587 1 0 4 family Hapalosiphonaceae 3 genus Fischerella 2 1190 1 583 0 2 1 no rank 0 581 494603 581 1752063 0 1 Fischerella sp. NIES-3754 species 18 Nostocaceae family 46 0 1162 1 10031 1 6514 1177 54 0 Nostoc 10 genus 4619 2593658 0 7 no rank species Nostoc sp. CENA543 1 600 1869241 0 1 Nostoc sp. PCC 7524 species 0 815 28072 0 1751286 646 species 1 Nostoc sp. NIES-3756 0 1618022 651 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' species 0 571 317936 species 1 Nostoc sp. PCC 7107 1261031 884 0 species 1 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 Nostoc sp. PCC 7120 species 452 103690 0 1 Nostoc punctiforme species 272131 834 0 Nostoc flagelliforme 1 species 1306274 1007 0 Anabaena 4 genus 13 0 1 2303 1163 Anabaena cylindrica 1 species 1165 774 0 no rank 2 0 1516 2619674 Anabaena sp. WA102 1 species 730 1647413 0 species 1 Anabaena sp. 90 46234 786 0 Trichormus 3 genus 9 0 1 1168 264688 0 620 264691 Trichormus variabilis 1 species species 1 Trichormus azollae 539 1164 0 family 8 0 2661849 5495 8 Calothrix genus 1186 5495 1 91 0 0 32054 797 Calothrix parietina 1 species 2619626 4607 0 6 no rank 0 692 2005462 species 1 Calothrix sp. NIES-3974 Calothrix sp. PCC 7507 1 species 501 99598 0 0 2005469 1305 1 Calothrix sp. NIES-4071 species 0 1954171 705 1 Calothrix sp. NIES-2098 species 2005461 927 0 1 Calothrix sp. NIES-4101 species species 1 Calothrix sp. 336/3 477 1337936 0 0 23 1185 1329 1 family Rivulariaceae 3 373984 1 1306 0 2 genus Rivularia 2 1 no rank 2676603 1304 0 1 Rivularia sp. PCC 7116 species 1304 373994 0 0 1219117 680 no rank 1 Nostocales cyanobacterium HT-58-2 1 species 680 1940762 0 1 43948 1890424 0 453 order Synechococcales 57 2 family 0 1144 2303730 genus Halomicronema 2 170610 1144 1 0 2 0 1209493 1142 1 Halomicronema hongdechloris species 6 Leptolyngbyaceae family 1 4628 1890438 61 0 0 16 47251 1 4567 genus 5 Leptolyngbya species 1 Leptolyngbya boryana 0 748 1184 3 no rank 2650499 3803 0 Leptolyngbya sp. NIES-3755 1 species 0 1752064 892 species 1 Leptolyngbya sp. O-77 0 2235 1080068 species Leptolyngbya sp. PCC 7376 1 111781 676 0 family 5 Prochloraceae 0 13 1213 4704 1 4 Prochlorococcus genus 1218 4691 1 5 0 1219 3869 0 species Prochlorococcus marinus 1 no rank 2 0 817 2627481 334 1501269 0 species Prochlorococcus sp. MIT 0801 1 483 1501268 0 Prochlorococcus sp. MIT 0604 1 species 2 family 732 1890429 0 2 Acaryochloris genus 732 1 155977 1 0 Acaryochloris marina 1 species 155978 731 0 family Pseudanabaenaceae 3 0 4 1 702 1890436 2 Pseudanabaena genus 11 0 1152 1 698 2593292 687 0 1 no rank 82654 687 0 species 1 Pseudanabaena sp. PCC 7367 233 0 1 30019 1890426 Synechococcaceae 33 family genus 26 Synechococcus 0 458 1129 21995 1 1173 32046 0 1 Synechococcus elongatus species 0 2626047 19691 23 no rank 1297 1916956 0 Synechococcus sp. SynAce01 1 species 110662 905 0 1 Synechococcus sp. CC9605 species species 1 Synechococcus sp. KORDI-100 0 1280380 1025 0 2117 321327 1 Synechococcus sp. JA-3-3Ab species 0 1453 321332 species Synechococcus sp. JA-2-3B'a(2-13) 1 585423 1332 0 species 1 Synechococcus sp. KORDI-49 32049 402 0 Synechococcus sp. PCC 7002 1 species species 1 Synechococcus sp. KORDI-52 908 585425 0 0 371 374982 species Synechococcus sp. PCC 73109 1 Synechococcus sp. PCC 7003 1 species 374981 568 0 species Synechococcus sp. PCC 7117 1 195498 378 0 1 Synechococcus sp. PCC 6312 species 379 195253 0 species 1 Synechococcus sp. WH 8109 166314 1158 0 0 84588 976 Synechococcus sp. WH 8102 1 species 29410 967 0 species Synechococcus sp. WH 8103 1 Synechococcus sp. RCC307 1 species 0 316278 1319 species 1 Synechococcus sp. CC9902 370 316279 0 species Synechococcus sp. CC9311 1 0 64471 335 1 Synechococcus sp. PCC 7502 species 308 1173263 0 0 32051 871 Synechococcus sp. WH 7803 1 species 727 1827144 0 1 Synechococcus sp. NIES-970 species 1097 1350461 0 Synechococcus sp. UTEX 2973 1 species species Synechococcus sp. PCC 8807 1 0 195248 428 673 33070 0 species Synechococcus lividus 1 17 0 1 577 13034 Dactylococcopsis 2 genus 1 Dactylococcopsis salina species 0 292566 560 167375 1 6646 0 134 genus Cyanobium 3 1 no rank 0 2627006 3645 Cyanobium sp. NIES-981 1 species 0 1851505 3645 species 1 Cyanobium gracile 2867 59930 0 genus 1 568 146785 0 species 1 Thermosynechococcus elongatus 0 146786 568 1 0 1890428 1566 1 Merismopediaceae 5 family 1 1565 1142 36 0 4 Synechocystis genus 0 2640012 1529 no rank 3 species Synechocystis sp. IPPAS B-1465 1 0 2116702 507 species Synechocystis sp. PCC 6803 1 0 1148 507 1147 515 0 species Synechocystis sp. PCC 6714 1 phylum 36 0 65200 1297 441 0 1 65200 188787 36 Deinococci class 0 200 1 19890 68933 order 17 Thermales 113 0 1 19690 188786 Thermaceae 16 family genus 2 Marinithermus 0 17 186191 1 1293 1276 186192 0 species 1 Marinithermus hydrothermalis Oceanithermus 2 genus 33 0 1 3051 208447 0 3018 187137 1 Oceanithermus profundus species 0 37 3602 1 65551 genus 3 Meiothermus Meiothermus silvanus 1 species 0 1373 52022 Meiothermus ruber 1 species 277 2192 0 genus 8 Thermus 270 11631 1 0 310 species 1 Thermus parvatiensis 0 456163 1179 0 271 1436 1 Thermus aquaticus species 0 1259 56957 1 Thermus oshimai species species Thermus brockianus 1 0 56956 1047 1 Thermus scotoductus species 0 37636 1323 0 2619321 1826 no rank 1 0 1111069 1826 species Thermus sp. CCB_US3_UF1 1 1 Thermus thermophilus species 0 274 3251 0 605 118964 42712 1 order 15 Deinococcales 0 269 183710 1 42107 family Deinococcaceae 14 Deinococcus 13 genus 41838 1 1298 470 0 5687 1182571 0 species 1 Deinococcus swuensis Deinococcus deserti 1 species 310783 2255 0 species 1 Deinococcus radiodurans 0 3900 1299 1 Deinococcus geothermalis species 2409 68909 0 3365 309887 0 Deinococcus maricopensis 1 species species 1 Deinococcus peraridilitoris 2626 432329 0 3187 2623546 0 no rank 1 0 3187 2080419 species Deinococcus sp. NW-56 1 4531 502394 0 1 Deinococcus gobiensis species 0 55148 4053 species 1 Deinococcus proteolyticus 0 3336 1768108 species 1 Deinococcus actinosclerus 2507 1182568 0 species 1 Deinococcus puniceus 1309411 3512 0 species Deinococcus soli Cha et al. 2016 1 order 3 0 2157 2762275 0 7 332247 1 2157 family 3 Trueperaceae 29 0 332248 1 2150 Truepera 2 genus 2121 332249 0 species Truepera radiovictrix 1 730 Firmicutes phylum 1 11356344 1239 568 0 0 3826 33974 no rank 2 Ndongobacter 2 genus 1930845 3826 1 43 0 0 1871025 3783 Ndongobacter massiliensis 1 species Tissierellia 19 class 1 51573 1737404 16 0 1883 1737407 0 no rank 2 genus 2 Ezakiella 1883 1 1582879 0 39 species Ezakiella massiliensis 1 0 1852374 1844 Tissierellales 16 order 811 0 1737405 1 49674 3 Gottschalkiaceae family 19 0 2042895 4057 1 Gottschalkia 2 genus 3 0 1505664 1 4038 0 4035 1556 Gottschalkia acidurici 1 species 1570339 1 44806 0 11761 family Peptoniphilaceae 12 2 Parvimonas genus 1 3959 543311 52 0 3907 33033 0 species 1 Parvimonas micra 24 0 162289 2918 1 2 Peptoniphilus genus 2894 2637196 0 1 no rank 0 2894 1912856 Peptoniphilus sp. ING2-D1G 1 species 0 21 1 4328 165779 genus Anaerococcus 3 33034 2501 0 Anaerococcus prevotii 1 species Anaerococcus mediterraneensis 1 species 1870984 1806 0 150022 1 3325 51 0 Finegoldia 2 genus 3274 1260 0 species 1 Finegoldia magna 0 10 1161127 18515 1 genus Murdochiella 2 0 18505 1852373 species Murdochiella vaginalis 1 909932 1 185738 217 0 31 Negativicutes class 0 186 1 50369 909929 order 14 Selenomonadales 9 Selenomonadaceae family 1843491 1 45051 236 0 Selenomonas 6 genus 461 0 1 40993 970 11232 971 0 species 1 Selenomonas ruminantium 3 no rank 2637378 20280 0 0 5963 1884263 1 Selenomonas sp. oral taxon 920 species 0 7373 712538 1 Selenomonas sp. oral taxon 478 species species 1 Selenomonas sp. oral taxon 136 713030 6944 0 species 1 Selenomonas sputigena 69823 9020 0 genus 2 Megamonas 0 3 158846 1 3822 0 158847 3819 Megamonas hypermegale 1 species 0 12 1843490 1 5132 family 4 Sporomusaceae 3 Pelosinus genus 22 0 5120 1 365348 2339 2629460 0 1 no rank 484770 2339 0 Pelosinus sp. UFO1 1 species 2759 365349 0 Pelosinus fermentans 1 species 11 Veillonellales order 1843489 1 87283 1457 0 2245 0 1 85826 31977 10 Veillonellaceae family 496 0 906 1 17791 Megasphaera 2 genus 907 17295 0 Megasphaera elsdenii 1 species genus 3 Veillonella 29465 60830 1 0 49 species 1 Veillonella parvula 54419 29466 0 0 248315 6362 1 Veillonella rodentium species 2151 1 909928 0 8 genus 2 Negativicoccus 1 Negativicoccus massiliensis species 0 1702287 2143 2 Dialister genus 85 0 1 2809 39948 species Dialister pneumosintes 1 2724 39950 0 0 98 1843488 1 47869 order 5 Acidaminococcales 4 Acidaminococcaceae family 222 0 1 47771 909930 genus Acidaminococcus 3 904 1 47549 0 173 34458 187327 0 1 Acidaminococcus intestini species 1 Acidaminococcus fermentans species 12918 905 0 9992079 1 186801 0 781 class 227 Clostridia Clostridiales 166 order 186802 1 9926245 34600 0 0 73 9573 1 543349 family Symbiobacteriaceae 3 2733 9500 1 0 40 genus Symbiobacterium 2 species Symbiobacterium thermophilum 1 9460 2734 0 5 Eubacteriaceae family 186806 36190 1 72 0 2 Acetobacterium genus 33951 1 3146 36 0 species 1 Acetobacterium woodii 0 3110 33952 1749 0 1730 32972 1 Eubacterium 2 genus Eubacterium limosum 1 species 0 31223 1736 27 Lachnospiraceae family 1 3887335 186803 3299 0 genus Lachnoclostridium 4 1506553 1 182065 0 1310 1 no rank 2608895 56672 0 1834196 56672 0 Lachnoclostridium sp. YL32 1 species Lachnoclostridium phocaeense 1 species 0 1871021 102786 66219 21297 0 1 Lachnoclostridium phytofermentans species 0 75419 2719231 1 genus 0 75419 84030 1 [Clostridium] saccharolyticum species 207244 1 288706 194 0 Anaerostipes 2 genus 288512 649756 0 species 1 Anaerostipes hadrus 0 126 830 58586 1 genus Butyrivibrio 3 0 185008 27062 1 Butyrivibrio hungatei species 31398 43305 0 1 Butyrivibrio proteoclasticus species 186928 464686 0 no rank 2 1 [Eubacterium] rectale species 407754 39491 0 712991 56932 0 species Lachnospiraceae bacterium oral taxon 500 1 2569097 201440 0 1 genus 0 201440 39488 1 [Eubacterium] hallii species 1663717 1 14578 0 20 genus Herbinix 2 0 14558 1679721 species 1 Herbinix luporum 1 genus 209786 2719313 0 [Clostridium] bolteae 1 species 0 209786 208479 73 0 841 1389810 1 2 Roseburia genus 301301 1389737 0 1 Roseburia hominis species genus 1 28050 729832 0 0 729832 39485 species 1 [Eubacterium] eligens 32 0 1 9609 2039240 2 Anaerotignum genus 1 Anaerotignum propionicum species 28446 9577 0 271 0 250179 1 572511 Blautia 3 genus 0 180930 1322 species 1 Blautia hansenii 0 68978 2648079 no rank 1 Blautia sp. YL58 1 species 0 1796616 68978 11 0 698776 9340 1 Cellulosilyticum 2 genus species Cellulosilyticum lentocellum 1 9329 29360 0 family Ruminococcaceae 13 1 4660466 541000 0 1083 2305133 22578 0 1 no rank Ruminococcaceae bacterium CPB6 1 species 22578 1572656 0 genus Faecalibacterium 2 0 1865 1 4368541 216851 4366676 853 0 1 Faecalibacterium prausnitzii species Herbivorax 1 genus 5 1890281 0 0 342 946234 1 124024 genus Flavonifractor 2 292800 123682 0 1 Flavonifractor plautii species 1 107681 1263 283 0 3 Ruminococcus genus species 1 Ruminococcus bicirculans 1160721 79410 0 27988 1264 0 Ruminococcus albus 1 species genus 2 Ethanoligenens 1 26648 253238 0 91 species Ethanoligenens harbinense 1 0 26557 253239 552397 9906 0 1 no rank species 1 [Clostridium] cellulosi 29343 9906 0 1 193560 186804 548 0 12 Peptostreptococcaceae family 1 no rank 1411023 2524 0 0 2524 2081703 Peptostreptococcaceae bacterium oral taxon 929 1 species Clostridioides 2 genus 352 0 1870884 1 172323 species 1 Clostridioides difficile 0 171971 1496 0 12 2839 1 44259 genus 2 Filifactor 143361 2827 0 species Filifactor alocis 1 genus Acetoanaerobium 2 3799 1 186831 0 14 0 3785 1511 species 1 Acetoanaerobium sticklandii Peptoclostridium 2 genus 1 3821 1481960 16 0 1 Peptoclostridium acidaminophilum species 0 1731 3805 genus Paeniclostridium 2 0 4 1 7706 1849828 1 Paeniclostridium sordellii species 0 1505 7702 8 0 1 2170 68298 Syntrophomonadaceae 4 family 0 862 1300 genus 1 species 1 Syntrophomonas wolfei 1300 863 0 0 5 129001 1 862 genus Syntrophothermus 2 86170 857 0 1 Syntrophothermus lipocalidus species 41 Clostridiaceae family 1420 0 307315 1 31979 0 2076 1485 284706 1 genus Clostridium 30 Clostridium sporogenes 1 species 0 1509 4491 species Clostridium cochlearium 1 1494 5250 0 Clostridium saccharoperbutylacetonicum 1 species 0 36745 8328 0 8844 1501 Clostridium pasteurianum 1 species 1 Clostridium bornimense species 6927 1216932 0 species 1 Clostridium saccharobutylicum 7326 169679 0 1 Clostridium acetobutylicum species 0 5055 1488 9695 1502 0 species 1 Clostridium perfringens species Clostridium novyi 1 1542 4482 0 1 Clostridium argentinense species 29341 5236 0 1 Clostridium tyrobutyricum species 0 3986 1519 2 no rank 89486 2614128 0 species Clostridium sp. SY8519 1 1042156 81194 0 0 755731 8292 Clostridium sp. BNL1100 1 species Clostridium tetani 1 species 0 6770 1513 4256 84023 0 species Clostridium autoethanogenum 1 1 Clostridium taeniosporum species 0 394958 5409 0 238834 5483 1 Clostridium estertheticum species 1 Clostridium beijerinckii species 0 9595 1520 Clostridium cellulovorans 1 species 1493 6151 0 species Clostridium aceticum 1 0 3085 84022 9047 1561 0 species Clostridium baratii 1 0 4457 1497 species 1 Clostridium formicaceticum 6554 1548 0 species Clostridium scatologenes 1 1 Clostridium carboxidivorans species 217159 5670 0 0 7798 1534 species Clostridium kluyveri 1 0 46867 5801 species Clostridium chauvoei 1 0 28343 1491 Clostridium botulinum 1 species 4324 1538 0 Clostridium ljungdahlii 1 species 1492 10781 0 species Clostridium butyricum 1 genus Candidatus Arthromitus 4 1 6753 49082 0 223 3 no rank 0 2638829 6530 Candidatus Arthromitus sp. SFB-mouse 1 species 0 49118 1888 2738 1041504 0 1 Candidatus Arthromitus sp. SFB-rat-Yit species species 1 Candidatus Arthromitus sp. SFB-mouse-NL 1904 1508644 0 genus Mordavella 1 488 1981033 0 3 Alkaliphilus genus 28 0 7275 1 114627 208226 4256 0 1 Alkaliphilus metalliredigens species Alkaliphilus oremlandii 1 species 0 2991 461876 2 Geosporobacter genus 41 0 6673 1 390805 species 1 Geosporobacter ferrireducens 1424294 6632 0 49 0 56003 1 216572 Oscillospiraceae 3 family genus Oscillibacter 2 459786 1 55954 0 120 species Oscillibacter valericigenes 1 0 55834 351091 1 65165 186807 0 268 family 29 Peptococcaceae 1 genus 0 3609 2282740 species Desulfotomaculum gibsoniae 1 102134 3609 0 1 genus 0 2282742 1763 0 58138 1763 species 1 Desulfotomaculum acetoxidans 0 87 56112 13438 1 genus 4 Dehalobacter species Dehalobacter restrictus 1 4090 55583 0 2 no rank 9261 2635733 0 1147129 4521 0 species Dehalobacter sp. DCA 1 1 Dehalobacter sp. CF species 0 1131462 4740 2 0 2021 1 278993 Thermincola 2 genus Thermincola potens 1 species 0 2019 863643 4 Desulfosporosinus genus 1 8488 79206 178 0 2195 1563 0 species 1 Desulfosporosinus orientis species Desulfosporosinus meridiei 1 0 79209 3876 0 2239 885581 Desulfosporosinus acidiphilus 1 species 36853 13293 1 151 0 5 Desulfitobacterium genus 0 36854 3095 species 1 Desulfitobacterium dehalogenans 0 142877 2683 species Desulfitobacterium metallireducens 1 4661 49338 0 Desulfitobacterium hafniense 1 species species 1 Desulfitobacterium dichloroeliminans 233055 2703 0 genus 2 Dehalobacterium 0 27 51514 1 6072 species 1 Dehalobacterium formicoaceticum 0 6045 51515 Syntrophobotulus 2 genus 51196 1 3696 4 0 0 51197 3692 species Syntrophobotulus glycolicus 1 0 318 1562 1 9748 genus Desulfotomaculum 5 Desulfotomaculum ruminis 1 species 3524 1564 0 1 Desulfotomaculum nigrificans species 0 1978 1565 Desulfotomaculum reducens 1 species 0 1757 59610 Desulfotomaculum ferrireducens 1 species 2171 1833852 0 genus 2 Candidatus Desulforudis 471826 1 2769 0 40 species Candidatus Desulforudis audaxviator 1 0 2729 471827 31984 5916 1 53 0 Heliobacteriaceae 3 family genus Heliobacterium 2 0 107 2697 5863 1 0 5756 35701 species Heliobacterium modesticaldum 1 12 family 0 101660 2304686 genus 2 Ruminiclostridium 0 1058 1 8075 1508657 1521 7017 0 species [Clostridium] cellulolyticum 1 0 10 236752 2408 1 genus Fastidiosipila 2 species Fastidiosipila sanguinis 1 0 236753 2398 genus 2 Mageeibacillus 0 10 1637257 1 6337 884684 6327 0 species Mageeibacillus indolicus 1 1 genus 2304691 5467 0 0 5467 1510 species [Clostridium] stercorarium 1 1 no rank 0 2305130 58391 0 1834198 58391 1 Ruminiclostridium sp. KB18 species 3 genus 14494 2304692 0 5173 1515 0 species 1 Ruminiclostridium thermocellum Herbivorax saccincola 1 species 3745 1677857 0 [Clostridium] clariflavum 1 species 0 288965 5576 2304693 6488 0 genus 1 0 6488 84032 1 [Clostridium] thermosuccinogenes species 1 67258 990719 42 0 3 Christensenellaceae family 2 Christensenella genus 67216 1 990721 1153 0 1 Christensenella massiliensis species 1805714 66063 0 499034 538999 0 10 no rank Intestinimonas 2 genus 1308 0 1 166875 1392389 0 165567 1297617 1 Intestinimonas butyriciproducens species Clostridiales Family XVII. Incertae Sedis 3 family 1 4527 539000 12 0 2 Thermaerobacter genus 1 4515 73918 15 0 species Thermaerobacter marianensis 1 73919 4500 0 317521 2717089 0 1 genus species 1 Mordavella sp. Marseille-P3756 0 2086584 317521 543314 1 10111 21 0 Clostridiales Family XIII. Incertae Sedis 4 family 4995 143393 0 1 [Eubacterium] sulci species 86331 5095 1 24 0 Mogibacterium 2 genus 0 5071 114527 1 Mogibacterium diversum species order Halanaerobiales 12 1 8446 53433 0 7 1 5100 972 0 17 family Halanaerobiaceae 6 2 Halothermothrix genus 1 1228 32636 15 0 0 31909 1213 Halothermothrix orenii 1 species Halanaerobium 3 genus 1 3855 2330 56 0 species Halanaerobium praevalens 1 0 2331 2023 0 656519 1776 Halanaerobium hydrogeniformans 1 species Halobacteroidaceae 5 family 25 0 53434 1 3339 genus Halobacteroides 2 0 21 42417 1 1495 0 1474 42422 species 1 Halobacteroides halobius 1819 1 28186 17 0 2 Acetohalobium genus Acetohalobium arabaticum 1 species 0 1802 28187 485256 1 1460 0 16 order 4 Natranaerobiales 485255 1 1444 8 0 3 Natranaerobiaceae family 375928 1 1436 88 0 Natranaerobius 2 genus 0 1348 375929 Natranaerobius thermophilus 1 species Thermoanaerobacterales 40 order 51683 1 68295 51 0 543372 1 2462 4 0 Thermoanaerobacterales Family IV. Incertae Sedis 3 family genus Mahella 2 0 10 1 2458 252965 0 2448 252966 species Mahella australiensis 1 Thermoanaerobacteraceae 20 family 1 24898 186814 102 0 7 0 1 2032 249529 Caldanaerobacter 2 genus Caldanaerobacter subterraneus 1 species 0 911092 2025 4777 42857 0 4 no rank 0 7 1 3171 44260 genus Moorella 2 0 3164 1525 species 1 Moorella thermoacetica Ammonifex 2 genus 52 0 1 1606 42837 species Ammonifex degensii 1 1554 42838 0 0 4 1 1713 129957 genus Carboxydothermus 2 1 Carboxydothermus hydrogenoformans species 129958 1709 0 genus 9 Thermoanaerobacter 1 14528 1754 0 745 0 1704 29323 species 1 Thermoanaerobacter brockii species 1 Thermoanaerobacter pseudethanolicus 0 1704 496866 46354 1750 0 Thermoanaerobacter wiegelii 1 species species 1 Thermoanaerobacter kivui 0 2325 2178 0 1263 583357 Thermoanaerobacter mathranii 1 species Thermoanaerobacter italicus 1 species 0 1616 108150 2 no rank 2636821 3568 0 species 1 Thermoanaerobacter sp. X513 0 573062 1896 1672 399726 0 species Thermoanaerobacter sp. X514 1 1 1746 140458 0 35 genus 2 Thermacetogenium species Thermacetogenium phaeum 1 0 1711 85874 227387 1 593 0 1 family Thermodesulfobiaceae 3 2 Thermodesulfobium genus 1 0 1 592 227388 591 184064 0 Thermodesulfobium narugense 1 species 13 Thermoanaerobacterales Family III. Incertae Sedis family 543371 23679 1 43 0 44000 1 15654 0 330 genus 9 Caldicellulosiruptor 1942 31899 0 1 Caldicellulosiruptor bescii species species Caldicellulosiruptor hydrothermalis 1 0 1861 413888 52766 1762 0 species 1 Caldicellulosiruptor lactoaceticus Caldicellulosiruptor owensensis 1 species 0 1698 55205 1933 717609 0 1 Caldicellulosiruptor obsidiansis species species Caldicellulosiruptor kronotskyensis 1 0 1940 413889 1 Caldicellulosiruptor kristjanssonii species 0 52765 2091 0 2097 44001 Caldicellulosiruptor saccharolyticus 1 species 3 Thermoanaerobacterium genus 28895 1 7982 40 0 0 4798 1517 species 1 Thermoanaerobacterium thermosaccharolyticum species 1 Thermoanaerobacterium xylanolyticum 0 3144 29329 0 2770089 3464 4 order 1967 2770092 0 2 family 1 1967 499228 0 1 genus Tepidanaerobacter 2 Tepidanaerobacter acetatoxydans 1 species 0 499229 1966 1497 2770093 0 family 2 2 Thermosediminibacter genus 291988 1497 1 9 0 0 1488 291990 Thermosediminibacter oceani 1 species 1851 84086 0 no rank 1 1851 243899 0 species endosymbiont 'TC1' of Trimyema compressum 1 class Limnochordia 5 1 4254 1676648 0 26 4 Limnochordales order 1676649 1 4228 85 0 Limnochordaceae 3 family 1 4143 1676650 41 0 genus 2 Limnochorda 1 4102 1676651 0 50 1555112 4052 0 1 Limnochorda pilosa species 91061 1 1066677 601 0 Bacilli 433 class 164 Lactobacillales order 1 566431 186826 8049 0 Enterococcaceae 19 family 338 0 81852 1 64062 genus 3 Vagococcus 0 17 1 2695 2737 0 519472 1535 1 Vagococcus teuberi species Vagococcus penaei 1 species 0 1143 633807 genus 12 Enterococcus 0 3082 1350 1 57349 species Enterococcus faecium 1 1352 29800 0 0 2005703 2334 species 1 Enterococcus wangshanyuanii 2261 53345 0 1 Enterococcus durans species 1 Enterococcus thailandicus species 1502 417368 0 1 Enterococcus mundtii species 1953 53346 0 1351 9304 0 1 Enterococcus faecalis species 1141 37734 0 1 Enterococcus casseliflavus species 0 1741 1354 Enterococcus hirae 1 species no rank 3 0 4231 2608891 2057791 1268 0 Enterococcus sp. CR-Ec1 1 species 1 Enterococcus sp. FDAARGOS_375 species 0 2060307 1623 0 1340 2060306 species Enterococcus sp. FDAARGOS_163 1 51668 2255 1 0 6 genus 2 Tetragenococcus species Tetragenococcus halophilus 1 2249 51669 0 1 genus 0 33969 1425 species Melissococcus plutonius 1 0 1425 33970 58 Lactobacillaceae family 1 86339 33958 791 0 3 genus 0 2767842 3220 1 Lactobacillus pentosus species 1589 846 0 488 60520 0 species 1 Lactobacillus paraplantarum species 1 Lactobacillus plantarum 1590 1886 0 genus 2 2767889 1973 0 0 730 375175 species 1 Lactobacillus backii Lactobacillus coryniformis 1 species 0 1243 1610 2642 0 1578 28309 1 Lactobacillus 16 genus 1 Lactobacillus gallinarum species 0 1563 52242 Lactobacillus gasseri 1 species 2160 1596 0 0 705 267818 species 1 Lactobacillus kefiranofaciens 0 6038 1604 species 1 Lactobacillus amylovorus 4 no rank 2620435 2477 0 2108362 507 0 Lactobacillus sp. D1501 1 species 691 2099789 0 1 Lactobacillus sp. CBA3606 species 1 Lactobacillus sp. wkB8 species 1545702 724 0 0 2099788 555 1 Lactobacillus sp. CBA3605 species 0 795 1600 species 1 Lactobacillus acetotolerans 0 83683 796 Lactobacillus amylolyticus 1 species 0 109790 948 1 Lactobacillus jensenii species Lactobacillus acidophilus 1 species 1332 1579 0 1587 1697 0 species 1 Lactobacillus helveticus Lactobacillus delbrueckii 1 species 1584 4244 0 Lactobacillus johnsonii 1 species 2912 33959 0 1603 2767881 0 genus 2 837 53444 0 Lactobacillus lindneri 1 species 0 766 1625 species 1 Lactobacillus sanfranciscensis 3 genus 0 2767893 2122 1138822 685 0 Lactobacillus curieae 1 species species Lactobacillus buchneri 1 855 1581 0 582 152331 0 Lactobacillus parabuchneri 1 species genus 2 2697 2767885 0 Lactobacillus curvatus 1 species 28038 1111 0 species 1 Lactobacillus sakei 1599 1586 0 1 genus 2767892 843 0 Lactobacillus paracollinoides 1 species 240427 843 0 1 5500 1253 37 0 Pediococcus 6 genus 1065 1670797 0 1 species group species Pediococcus acidilactici 1 1065 1254 0 species 1 Pediococcus pentosaceus 1255 1421 0 1087 187452 0 Pediococcus claussenii 1 species 0 827 114090 species Pediococcus inopinatus 1 0 51663 1063 Pediococcus damnosus 1 species genus 1 0 674 2767890 species 1 Lactobacillus hokkaidonensis 0 1193095 674 4 genus 0 2767887 11016 species 1 Lactobacillus salivarius 0 4608 1624 0 1096 89059 Lactobacillus acidipiscis 1 species 1601 1181 0 Lactobacillus agilis 1 species species Lactobacillus ruminis 1 4131 1623 0 2767886 3284 0 3 genus 0 845 267363 species Lactobacillus zymae 1 0 1207 637971 1 Lactobacillus koreensis species 0 1580 1232 species Lactobacillus brevis 1 genus 1 0 669 2767877 1 Lactobacillus kunkeei species 0 148814 669 2767876 4480 0 genus 1 4480 1603 0 1 Lactobacillus amylophilus species 3 genus 0 2742598 5461 1503 97478 0 Lactobacillus mucosae 1 species 1598 2259 0 species 1 Lactobacillus reuteri 1 Lactobacillus fermentum species 1699 1613 0 genus 3 2759736 5766 0 0 1582 2677 Lactobacillus casei 1 species 0 47715 1346 species 1 Lactobacillus rhamnosus 0 1743 1597 1 Lactobacillus paracasei species 0 2767879 7931 genus 6 species 1 Lactobacillus alimentarius 0 1602 1269 Lactobacillus crustorum 1 species 0 392416 1454 1 Lactobacillus ginsenosidimutans species 0 1007676 1273 0 1369 1074467 species Lactobacillus heilongjiangensis 1 Lactobacillus allii 1 species 1209 1847728 0 species Lactobacillus farciminis 1 0 1357 1612 family Carnobacteriaceae 11 0 37 1 9921 186828 0 41 1 5897 2747 genus 5 Carnobacterium species 1 Carnobacterium maltaromaticum 2751 2110 0 0 147709 1303 species Carnobacterium inhibens 1 0 257487 2443 no rank 2 species Carnobacterium sp. CP1 1 0 1564681 1026 Carnobacterium sp. 17-4 1 species 1417 208596 0 0 29 1 2291 1470540 genus Jeotgalibaca 3 1 no rank 1369 2621505 0 species Jeotgalibaca sp. PTS2502 1 1903686 1369 0 893 708126 0 Jeotgalibaca dankookensis 1 species 5 0 191769 1 1696 2 Marinilactibacillus genus 1 no rank 0 2632303 1691 1 Marinilactibacillus sp. 15R species 1911586 1691 0 5852 0 1300 367586 1 Streptococcaceae 49 family 42 0 1357 9383 1 5 Lactococcus genus 1364 928 0 species 1 Lactococcus piscium 1 Lactococcus raffinolactis species 1366 979 0 species Lactococcus lactis 1 0 1358 6042 1392 1363 0 species 1 Lactococcus garvieae 43 Streptococcus genus 6596 0 1301 352351 1 Streptococcus gallolyticus 1 species 315405 3018 0 0 1634 1309 1 Streptococcus mutans species Streptococcus pseudopneumoniae 1 species 1105 257758 0 species Streptococcus oralis 1 0 1303 4410 0 1318 59006 species Streptococcus parasanguinis 1 932 400065 0 Streptococcus merionis 1 species 0 1888195 635 Streptococcus himalayensis 1 species 1 Streptococcus parauberis species 1317 1348 0 0 1305 2379 1 Streptococcus sanguinis species 4161 28037 0 species Streptococcus mitis 1 species 1 Streptococcus gordonii 0 1302 4948 Streptococcus agalactiae 1 species 0 1311 24579 1 Streptococcus pantholopis species 0 1445 1811193 7 no rank 2608887 26510 0 1126 1319 0 1 Streptococcus sp. 'group B' species Streptococcus sp. NPS 308 1 species 1902136 1177 0 0 1759399 4156 species 1 Streptococcus sp. A12 0 1839799 7263 Streptococcus sp. FDAARGOS_192 1 species 1156433 5584 0 1 Streptococcus sp. I-P16 species 0 712633 1771 species Streptococcus sp. oral taxon 431 1 5433 1156431 0 Streptococcus sp. I-G2 1 species 967 82348 0 1 Streptococcus pluranimalium species 0 2125 1346 1 Streptococcus iniae species 1349 931 0 species 1 Streptococcus uberis Streptococcus cristatus 1 species 0 1813 45634 species group 3 0 671232 87410 54758 1328 0 species Streptococcus anginosus 1 0 30251 76860 Streptococcus constellatus 1 species 1338 2401 0 species 1 Streptococcus intermedius 1 Streptococcus suis species 0 1307 41554 150055 9557 0 species 1 Streptococcus lutetiensis Streptococcus marmotae 1 species 0 987 1825069 1814128 807 0 Streptococcus halotolerans 1 species Streptococcus pasteurianus 1 species 0 7759 197614 Streptococcus infantarius 1 species 9881 102684 0 59310 873 0 species Streptococcus macedonicus 1 species Streptococcus pyogenes 1 0 3321 1314 1304 23212 0 1 Streptococcus salivarius species 3386 1313 0 species Streptococcus pneumoniae 1 1 Streptococcus thermophilus species 1308 3489 0 species group 2 0 3267 119603 1 Streptococcus dysgalactiae species 0 1019 1334 1336 2248 0 species 1 Streptococcus equi 0 4035 1335 species 1 Streptococcus equinus 0 4302 1326 Streptococcus acidominimus 1 species 81850 20716 1 40 0 Leuconostocaceae 17 family 0 46254 742 1 genus 1 Oenococcus oeni species 0 1247 742 genus Weissella 6 0 28 46255 1 3541 0 909 165096 Weissella koreensis 1 species species 1 Weissella paramesenteroides 618 1249 0 1 Weissella cibaria species 0 865 137591 0 650 1631871 species 1 Weissella jogaejeotgali 471 759620 0 1 Weissella ceti species 16393 1 1243 121 0 Leuconostoc 9 genus 0 2685106 524 1 no rank 1 Leuconostoc sp. C2 species 979982 524 0 0 594 136609 species Leuconostoc kimchii 1 1246 5917 0 species Leuconostoc lactis 1 5449 255248 0 species 1 Leuconostoc garlicum Leuconostoc citreum 1 species 33964 674 0 1255 1245 0 species Leuconostoc mesenteroides 1 0 1244 1011 species Leuconostoc gelidum 1 848 1252 0 species 1 Leuconostoc carnosum 8 Aerococcaceae family 186827 1 8610 16 0 7 Aerococcus genus 1 8594 1375 247 0 0 1376 1407 species 1 Aerococcus urinae 0 87541 1855 1 Aerococcus christensenii species 0 1575 119206 Aerococcus sanguinicola 1 species 1171 51665 0 species 1 Aerococcus urinaeequi 0 957 1377 species 1 Aerococcus viridans 0 1382 128944 species 1 Aerococcus urinaehominis 1148 263855 0 no rank 1 species Lactobacillales bacterium 1 0 1993866 1148 order Bacillales 268 0 1467 1 499645 1385 family Planococcaceae 27 0 233 186818 1 31051 3 0 1606 1 1649 Kurthia 2 genus 1603 2644826 0 no rank 1 Kurthia sp. 11kri321 1 species 1603 1750719 0 Jeotgalibacillus 2 genus 13 0 1 2254 157226 Jeotgalibacillus malaysiensis 1 species 2241 1508404 0 Solibacillus 3 genus 30 0 1 3892 648800 1 no rank 0 1356 2637870 1356 2048654 0 1 Solibacillus sp. R5-41 species 0 2506 76853 species 1 Solibacillus silvestris 5 Sporosarcina genus 59 0 1569 1 7741 species Sporosarcina ureae 1 0 1571 3858 2680 2647733 0 no rank 2 Sporosarcina sp. P33 1 species 1930764 1405 0 species 1 Sporosarcina sp. P37 0 1930546 1275 Sporosarcina psychrophila 1 species 0 1476 1144 14078 1 1372 0 178 genus Planococcus 12 1 Planococcus kocurii species 0 1162 1374 1215089 1146 0 Planococcus halocryophilus 1 species Planococcus rifietoensis 1 species 0 1564 200991 1068 1598147 0 species 1 Planococcus faecalis species Planococcus plakortidis 1 0 934 1038856 1302659 835 0 1 Planococcus sp. L10.15 species 1135 161360 0 species Planococcus antarcticus 1 0 854 414778 1 Planococcus donghaensis species 2464 2662419 0 no rank 2 species 1 Planococcus sp. PAMC 21323 0 1526927 812 Planococcus sp. MB-3u-03 1 species 0 2058136 1652 Planococcus maritimus 1 species 192421 2738 0 genus Rummeliibacillus 2 0 1 648802 1247 1 0 241244 1246 species Rummeliibacillus stabekisii 1 Sporolactobacillaceae 2 family 186821 1 1734 5 0 1 no rank 1729 663587 0 1 [Bacillus] selenitireducens species 1729 85683 0 family 119 Bacillaceae 186817 1 212439 0 553 genus Parageobacillus 2 0 9 1 1607 1906945 0 1598 1426 species Parageobacillus thermoglucosidasius 1 2675229 4281 0 2 genus 1 Bacillus simplex species 2853 1478 0 0 264697 1428 species Bacillus muralis 1 1 9104 400634 82 0 5 Lysinibacillus genus 1747 28031 0 species Lysinibacillus fusiformis 1 2636778 1542 0 1 no rank 1 Lysinibacillus sp. YS11 species 2072025 1542 0 1506 1145276 0 species Lysinibacillus varians 1 species Lysinibacillus sphaericus 1 0 1421 4227 2675230 3699 0 genus 2 Bacillus oceanisediminis 1 species 2178 665099 0 0 859143 1521 species Bacillus kochii 1 1 genus 0 351195 1636 species Salimicrobium jeotgali 1 0 1230341 1636 3 Fictibacillus genus 3337 1 1329200 19 0 1569 1221500 0 1 Fictibacillus phosphorivorans species 0 255247 1749 Fictibacillus arsenicus 1 species genus 6 Anoxybacillus 0 30 1 7027 150247 2513 2639704 0 2 no rank 1490052 1257 0 species 1 Anoxybacillus sp. B2M1 species Anoxybacillus sp. B7M1 1 1490057 1256 0 0 1251 198467 species Anoxybacillus gonensis 1 1 Anoxybacillus amylolyticus species 0 1257 294699 1976 33934 0 species Anoxybacillus flavithermus 1 5 0 175304 1487 1 2 Lentibacillus genus 1472767 1482 0 species Lentibacillus amyloliquefaciens 1 genus 2 Oceanobacillus 182709 1 2707 0 2 species Oceanobacillus iheyensis 1 2705 182710 0 genus 1 1571 1055323 0 1 Aeribacillus pallidus species 1571 33936 0 Virgibacillus 7 genus 79 0 84406 1 8729 0 163877 1317 Virgibacillus necropolis 1 species 0 1365 2017483 species 1 Virgibacillus phasianinus 0 1482 1530 species Virgibacillus halodenitrificans 1 2620237 3073 0 no rank 2 species Virgibacillus sp. SK37 1 403957 1437 0 1 Virgibacillus sp. 6R species 1636 1911587 0 species Virgibacillus pantothenticus 1 1365 1473 0 Amphibacillus 2 genus 29331 1 2336 1 0 species 1 Amphibacillus xylanus 0 1449 2335 Halobacillus 3 genus 1 0 45667 1 2694 1184 1570 0 species Halobacillus halophilus 1 species Halobacillus mangrovi 1 0 402384 1509 1 19724 129337 1127 0 Geobacillus 15 genus 0 1205 1921421 species 1 Geobacillus genomosp. 3 6 no rank 0 2642459 6169 species Geobacillus sp. C56-T3 1 691437 892 0 1 Geobacillus sp. Y4.1MC1 species 0 581103 1489 1 Geobacillus sp. Y412MC52 species 550542 700 0 0 757 544556 Geobacillus sp. Y412MC61 1 species 654 1233873 0 Geobacillus sp. GHH01 1 species Geobacillus sp. WCH70 1 species 1677 471223 0 0 1595 33940 species Geobacillus thermodenitrificans 1 0 1633 129338 1 Geobacillus subterraneus species 4 species group 1505648 6072 0 species 1 Geobacillus thermocatenulatus 0 1297 33938 species 1 Geobacillus thermoleovorans 0 33941 2455 0 652 1462 Geobacillus kaustophilus 1 species Geobacillus lituanicus 1 species 1668 169283 0 0 1422 1923 Geobacillus stearothermophilus 1 species 2675234 9946 0 5 genus species 1 Bacillus pseudofirmus 2261 79885 0 Bacillus krulwichiae 1 species 1425 199441 0 species Bacillus clausii 1 0 2839 79880 1 Bacillus halodurans species 0 86665 1663 0 300825 1758 Bacillus lehensis 1 species 459532 2286 1 0 5 genus Terribacillus 2 2281 586416 0 species 1 Terribacillus aidingensis 5852 0 1386 129715 1 Bacillus 58 genus 0 18736 185979 no rank 19 2049935 311 0 1 Bacillus sp. Lzh-5 species 429 1628753 0 species 1 Bacillus sp. LM 4-2 1827146 1472 0 species Bacillus sp. IHB B 7164 1 1093 1774743 0 species 1 Bacillus sp. SDLI1 0 1409 440 Bacillus sp. (in: Bacteria) 1 species 931 1446792 0 species 1 Bacillus sp. Pc3 1565991 2066 0 species 1 Bacillus sp. X1(2014) species Bacillus sp. H15-1 1 1679 1856406 0 0 419 1574141 Bacillus sp. YP1 1 species 0 1570330 322 species 1 Bacillus sp. BH072 1 Bacillus sp. 275 species 0 1941347 714 645 1127744 0 species Bacillus sp. JS 1 0 98228 1337 1 Bacillus sp. OxB-1 species 0 1238 756828 species 1 Bacillus sp. WP8 2009331 543 0 species Bacillus sp. MD-5 1 1 Bacillus sp. SJ-10 species 0 971 563169 Bacillus sp. 1s-1 1 species 1675 2026248 0 0 666686 1548 species 1 Bacillus sp. 1NLA3E 0 1837130 903 1 Bacillus sp. FJAT-14266 species 24639 653685 0 9 species group 1938374 7395 0 species subgroup 3 0 1390 3456 species 1 Bacillus amyloliquefaciens 659243 1070 0 species 1 Bacillus siamensis species 1 Bacillus velezensis 2869 492670 0 1853 119858 0 species Bacillus sonorensis 1 1956 1648923 0 1 Bacillus paralicheniformis species 0 316 72361 species Bacillus vallismortis 1 8401 1423 0 1 Bacillus subtilis species 0 1452 2013 1 Bacillus atrophaeus species 0 1402 2705 species 1 Bacillus licheniformis 230 79881 0 species 1 Bacillus gibsonii species Bacillus cohnii 1 0 1711 33932 4071 1404 0 Bacillus megaterium 1 species Bacillus beveridgei 1 species 0 632773 1471 species group 1 0 1792192 1493 293387 1493 0 species Bacillus altitudinis 1 2406 561879 0 species 1 Bacillus safensis 1 Bacillus infantis species 324767 2303 0 0 1178537 1288 1 Bacillus xiamenensis species Bacillus methanolicus 1 species 0 1471 1436 412384 1633 0 Bacillus aryabhattai 1 species 1 Bacillus endophyticus species 0 135735 1963 1581 86664 0 Bacillus flexus 1 species 0 5115 1408 Bacillus pumilus 1 species 1402 1413 0 species Bacillus cellulosilyticus 1 0 1398 4846 1 Bacillus coagulans species species Bacillus glycinifermentans 1 2529 1664069 0 1603 1479 0 species 1 Bacillus smithii Bacillus horikoshii 1 species 1794 79883 0 10 species group 0 86661 40076 species 1 Bacillus cytotoxicus 0 580165 1721 1 Bacillus anthracis species 0 1514 1392 11977 1428 0 Bacillus thuringiensis 1 species 12365 1396 0 Bacillus cereus 1 species 0 1452 155322 species 1 Bacillus toyonensis 2750818 4986 0 no rank 3 1839798 2034 0 species 1 Bacillus sp. FDAARGOS_235 1892404 1353 0 species 1 Bacillus sp. ABP14 0 1599 2053832 Bacillus sp. HBCD-sjtu 1 species 0 4682 1405 Bacillus mycoides 1 species species 1 Bacillus bombysepticus 1379 658666 0 Bacillus weihaiensis 1 species 0 1547283 1537 Listeriaceae 9 family 55 0 11501 1 186820 5 0 1376 1 2755 2 Brochothrix genus Brochothrix thermosphacta 1 species 2756 1371 0 Listeria 6 genus 126 0 1637 1 10070 species 1 Listeria welshimeri 1643 1313 0 Listeria ivanovii 1 species 0 2193 1638 0 3728 1639 species Listeria monocytogenes 1 0 1285 1640 species Listeria seeligeri 1 species 1 Listeria innocua 1425 1642 0 no rank 9 0 539002 9627 2 no rank 2247 539738 0 6 0 1378 1 2247 Gemella 2 genus 0 2241 2624949 no rank 1 species 1 Gemella sp. oral taxon 928 0 1785995 2241 7380 539742 0 no rank 7 0 195 1 7380 33986 genus Exiguobacterium 7 2644629 4919 0 4 no rank 0 1265 1224749 species 1 Exiguobacterium sp. ZWU0009 species Exiguobacterium sp. MH3 1 1016 1399115 0 Exiguobacterium sp. AT1b 1 species 0 360911 1388 Exiguobacterium sp. U13-1 1 species 1849031 1250 0 1 Exiguobacterium antarcticum species 0 132920 925 332410 1341 0 Exiguobacterium sibiricum 1 species 1 14645 186823 0 61 family 9 Alicyclobacillaceae genus Alicyclobacillus 2 29330 1 4463 0 123 0 405212 4340 Alicyclobacillus acidocaldarius 1 species 77 0 1 3049 1129704 3 Kyrpidia genus 1465 2055160 0 1 Kyrpidia sp. EA-1 species 0 33943 1507 Kyrpidia tusciae 1 species genus Tumebacillus 3 0 64 7072 1 432330 Tumebacillus algifaecis 1 species 0 1214604 2542 species 1 Tumebacillus avium 0 4466 1903704 Paenibacillaceae 46 family 186822 1 158042 404 0 36 Paenibacillus genus 1256 0 44249 1 139192 0 44251 6619 species Paenibacillus durus 1 1 Paenibacillus bovis species 0 1616788 3644 species Paenibacillus stellifer 1 0 169760 6455 Paenibacillus odorifer 1 species 0 189426 2352 species Paenibacillus beijingensis 1 0 1126833 4161 2026 59893 0 1 Paenibacillus peoriae species species 1 Paenibacillus larvae 1464 2617 0 species 1 Paenibacillus graminis 5495 189425 0 13 no rank 0 185978 48421 Paenibacillus sp. 32O-W 1 species 4193 1695218 0 species Paenibacillus sp. FSL H7-0357 1 4612 1536774 0 Paenibacillus sp. BIHB4019 1 species 1870819 3275 0 1 Paenibacillus sp. FSL R5-0912 species 1536771 5289 0 species Paenibacillus sp. FSL R5-0345 1 2195 1536770 0 4939 1536772 0 species Paenibacillus sp. FSL R7-0273 1 0 5140 1536773 1 Paenibacillus sp. FSL R7-0331 species 0 1536769 5914 species Paenibacillus sp. FSL P4-0081 1 species Paenibacillus sp. FSL H7-0737 1 0 2405 1536775 0 481743 3362 Paenibacillus sp. Y412MC10 1 species 1 Paenibacillus sp. JDR-2 species 0 3529 324057 species 1 Paenibacillus sp. IHBB 10380 1648 1566358 0 1 Paenibacillus sp. lzh-N1 species 0 1920 2069255 1 Paenibacillus xylanexedens species 0 2756 528191 species 1 Paenibacillus naphthalenovorans 0 2069 162209 1 Paenibacillus ihbetae species 1870820 4275 0 1 Paenibacillus mucilaginosus species 0 7716 61624 6706 1406 0 1 Paenibacillus polymyxa species 1 Paenibacillus sabinae species 0 365617 3402 Paenibacillus terrae 1 species 2125 159743 0 1763538 1752 0 species Paenibacillus crassostreae 1 species 1 Paenibacillus borealis 5576 160799 0 species group 1 0 4879 2044880 0 4879 483937 species 1 Paenibacillus riograndensis 1 Paenibacillus yonginensis species 0 4602 1462996 0 2314 172713 Paenibacillus kribbensis 1 species 414771 5477 0 species Paenibacillus donghaensis 1 1178515 2497 0 1 Paenibacillus swuensis species 85151 3248 0 no rank 3 3 Aneurinibacillus genus 3248 1 55079 16 0 1 no rank 2642329 1387 0 1 Aneurinibacillus sp. XH2 species 0 1450761 1387 1 Aneurinibacillus soli species 1500254 1845 0 2 Thermobacillus genus 76632 1 7881 98 0 species Thermobacillus composti 1 0 7783 377615 4 Brevibacillus genus 1 7317 55080 60 0 1 Brevibacillus brevis species 0 1393 2748 1 Brevibacillus formosus species 0 1829 54913 0 2680 1465 Brevibacillus laterosporus 1 species family Staphylococcaceae 42 1 56569 90964 0 2057 4246 1 69965 0 34 genus 4 Macrococcus 0 1169 1855823 species 1 Macrococcus canis 2619255 1407 0 1 no rank 1 Macrococcus sp. IME1552 species 1898474 1407 0 0 1636 69966 1 Macrococcus caseolyticus species genus 33 Staphylococcus 0 890 1279 47239 1 Staphylococcus epidermidis 1 species 0 1877 1282 Staphylococcus simulans 1 species 1286 1496 0 1 Staphylococcus stepanovicii species 0 643214 1198 species Staphylococcus simiae 1 1541 308354 0 1 Staphylococcus lutrae species 859 155085 0 species Staphylococcus haemolyticus 1 1454 1283 0 0 1485 1296 Staphylococcus sciuri 1 species 0 985002 1430 1 Staphylococcus argenteus species 1210 29384 0 1 Staphylococcus kloosii species 1062 46127 0 Staphylococcus felis 1 species Staphylococcus xylosus 1 species 1891 1288 0 1 Staphylococcus nepalensis species 0 214473 1048 1 Staphylococcus hyicus species 0 1199 1284 0 1290 1483 Staphylococcus hominis 1 species species Staphylococcus pettenkoferi 1 0 170573 856 species 1 Staphylococcus succinus 0 61015 1109 species Staphylococcus lugdunensis 1 28035 1136 0 1162 29385 0 species 1 Staphylococcus saprophyticus 29388 1234 0 species Staphylococcus capitis 1 species 1 Staphylococcus aureus 0 4977 1280 283734 1600 0 1 Staphylococcus pseudintermedius species 942 985762 0 species 1 Staphylococcus agnetis 0 91994 1305 no rank 1 1305 1715860 0 species 1 Staphylococcus sp. AntiMn-1 810 70258 0 species 1 Staphylococcus piscifermentans species Staphylococcus warneri 1 1684 1292 0 1406 29382 0 Staphylococcus cohnii 1 species 0 45972 2885 species Staphylococcus pasteuri 1 species Staphylococcus schleiferi 1 0 1295 1196 Staphylococcus carnosus 1 species 1124 1281 0 0 246432 1640 Staphylococcus equorum 1 species 70255 1190 0 Staphylococcus condimenti 1 species 860 1294 0 Staphylococcus muscae 1 species genus Auricoccucs 2 0 134 1 1271 2005363 1137 1849491 0 1 Auricoccus indicus species 142 0 1 1756 45669 Salinicoccus 2 genus 0 407035 1614 species Salinicoccus halodurans 1 1 0 1 2570 186824 Thermoactinomycetaceae 4 family genus 1 Laceyella 25 292635 0 genus 2 Novibacillus 0 85 1677050 1 2544 1471761 2459 0 species Novibacillus thermophilus 1 526524 1 49778 12 0 11 Erysipelotrichia class 49766 1 526525 0 66 order Erysipelotrichales 10 0 128 128827 49700 1 family Erysipelotrichaceae 9 72 0 4812 1 1647 Erysipelothrix 3 genus 0 2300 1514105 Erysipelothrix larvae 1 species Erysipelothrix rhusiopathiae 1 species 0 1648 2440 2 Faecalibaculum genus 51 0 1 13388 1729679 1 Faecalibaculum rodentium species 13337 1702221 0 1 13626 191303 0 22 genus 2 Turicibacter 2638206 13604 0 1 no rank species 1 Turicibacter sp. H121 1712675 13604 0 1 no rank 17746 544447 0 0 17746 1834207 species 1 Erysipelotrichaceae bacterium I46 1 65192 544448 0 6 phylum Tenericutes 102 31969 58083 1 0 78 class 97 Mollicutes 2085 22132 1 0 60 order Mycoplasmatales 44 22072 1 2092 0 93 family 43 Mycoplasmataceae 0 2767358 6629 genus 12 0 394 29553 species 1 Mycoplasma bovirhinis 0 315 2113 1 Mycoplasma californicum species 1 Mycoplasma canis species 0 545 29555 Mycoplasma bovigenitalium 1 species 357 2112 0 1 Mycoplasma fermentans species 0 886 2115 species Mycoplasma agalactiae 1 2110 780 0 1 Mycoplasma arginini species 0 2094 603 28903 929 0 species 1 Mycoplasma bovis Mycoplasma cynos 1 species 0 171284 575 2107 527 0 species Mycoplasma pulmonis 1 361 48003 0 species 1 Mycoplasma pullorum species Mycoplasma synoviae 1 0 357 2109 275 0 2093 14092 1 Mycoplasma 27 genus species 1 Mycoplasma ovis 97 171632 0 0 86660 268 Mycoplasma dispar 1 species 0 280 2128 species Mycoplasma flocculare 1 species Mycoplasma suis 1 0 57372 289 species Mycoplasma hyorhinis 1 0 2100 480 2098 1139 0 species 1 Mycoplasma hominis 1 Mycoplasma gallisepticum species 2096 414 0 0 204 984991 species Mycoplasma parvum 1 3 species group 0 3970 656088 species 1 Mycoplasma capricolum 1040 2095 0 1 Mycoplasma leachii species 984 2105 0 Mycoplasma mycoides 1 species 1946 2102 0 2683645 665 0 no rank 1 665 1749074 0 Mycoplasma sp. (ex Biomphalaria glabrata) 1 species species Mycoplasma crocodyli 1 50052 607 0 1 Mycoplasma yeatsii species 0 51365 947 Mycoplasma pneumoniae 1 species 0 151 2104 species Mycoplasma genitalium 1 187 2097 0 122 136241 0 Mycoplasma haemocanis 1 species 28227 899 0 species Mycoplasma penetrans 1 species 1 Mycoplasma hyopneumoniae 0 395 2099 1 Mycoplasma canadense species 600 29554 0 29501 80 0 species 1 Mycoplasma haemofelis 0 2118 504 species Mycoplasma mobile 1 Mycoplasma wenyonii 1 species 65123 67 0 0 2123 629 species Mycoplasma putrefaciens 1 457 2111 0 species Mycoplasma arthritidis 1 45362 366 0 species 1 Mycoplasma bovoculi 1 0 1258 1 2129 Ureaplasma 3 genus 0 616 2130 Ureaplasma urealyticum 1 species Ureaplasma parvum 1 species 134821 641 0 13 Acholeplasmatales order 186329 1 9841 11 0 family 12 Acholeplasmataceae 9830 1 2146 0 50 5 Acholeplasma genus 140 0 2147 7063 1 0 61635 1258 species Acholeplasma brassicae 1 Acholeplasma laidlawii 1 species 0 2148 1953 35623 1657 0 species Acholeplasma oculi 1 2055 38986 0 species Acholeplasma palmae 1 33926 1 2717 0 97 genus Candidatus Phytoplasma 6 0 85630 444 1 species group 444 37692 0 species Candidatus Phytoplasma mali 1 574 85632 0 species group 1 59748 574 0 species 1 Candidatus Phytoplasma australiense 0 85620 1602 3 species group 1 Aster yellows witches'-broom phytoplasma species 0 229545 446 0 484 202462 species 1 Maize bushy stunt phytoplasma 100379 672 0 species 1 Onion yellows phytoplasma order 39 Entomoplasmatales 0 53 1 26032 186328 18 0 33925 1 8407 14 Entomoplasmataceae family genus 8 Mesoplasma 0 142 46239 1 5922 species 1 Mesoplasma syrphidae 225999 1042 0 0 1206 138853 Mesoplasma lactucae 1 species Mesoplasma coleopterae 1 species 324078 569 0 1 Mesoplasma florum species 0 2151 1225 2149 590 0 Mesoplasma entomophilum 1 species species 1 Mesoplasma chauliocola 0 216427 584 species 1 Mesoplasma tabanidae 564 219745 0 1 2467 46238 61 0 Entomoplasma 5 genus species Entomoplasma melaleucae 1 753 81459 0 1 Entomoplasma freundtii species 0 492 74700 601 215578 0 species Entomoplasma somnilux 1 0 560 214888 Entomoplasma luminosum 1 species family Spiroplasmataceae 24 0 33 17572 1 2131 2132 1 17539 0 687 genus Spiroplasma 23 216937 802 0 species 1 Spiroplasma floricola 0 781 216934 species Spiroplasma corruscae 1 species Spiroplasma syrphidicola 1 753 216945 0 0 978 2145 Spiroplasma taiwanense 1 species 1100 2637901 0 2 no rank 1914410 550 0 Spiroplasma sp. NBRC 100390 1 species 0 1898044 550 Spiroplasma sp. TU-14 1 species Spiroplasma litorale 1 species 853 216942 0 0 1001 216946 species Spiroplasma turonicum 1 Spiroplasma helicoides 1 species 678 216938 0 1 Spiroplasma apis species 0 689 2137 1114980 620 0 Spiroplasma atrichopogonis 1 species 846 2139 0 species 1 Spiroplasma clarkii 706 2136 0 species Spiroplasma monobiae 1 0 848 362837 Spiroplasma cantharicola 1 species 0 838 2133 species Spiroplasma citri 1 1 Spiroplasma chrysopicola species 216933 548 0 216944 715 0 species Spiroplasma sabaudiense 1 47834 918 0 1 Spiroplasma kunkelii species 1 Spiroplasma diminutum species 900 216936 0 species 1 Spiroplasma culicicola 960 216935 0 Spiroplasma eriocheiris 1 species 0 315358 723 595 2144 0 1 Spiroplasma mirum species no rank 2 0 713063 5179 1911684 2519 0 Tenericutes bacterium MO-XQ 1 species 0 2660 1911683 1 Tenericutes bacterium MZ-XQ species no rank 2 0 2799557 1924 2 Candidatus Izimaplasma genus 1912503 1924 1 7 0 1 no rank 2624196 1917 0 species Candidatus Izimaplasma sp. HR1 1 1917 1541959 0 228 0 1 1749411 201174 657 Actinobacteria phylum 11381 0 1 1421562 1760 Actinobacteria 602 class 1 5108 414714 0 15 order Catenulisporales 4 family Catenulisporaceae 3 414877 1 5093 0 58 genus Catenulispora 2 1 5035 414878 0 20 species 1 Catenulispora acidiphila 5015 304895 0 order 33 Propionibacteriales 0 271 1 51245 85009 1 33068 31957 682 0 19 Propionibacteriaceae family 0 36 1 5372 1912216 genus Cutibacterium 4 Cutibacterium acnes 1 species 1747 1353 0 1 Cutibacterium granulosum species 0 1492 33011 Cutibacterium avidum 1 species 2491 33010 0 1 3877 1912215 0 16 genus 2 Acidipropionibacterium Acidipropionibacterium acidipropionici 1 species 1748 3861 0 1 genus 3306 203133 0 no rank 1 0 3306 2633994 1871034 3306 0 Propionimicrobium sp. Marseille-P3275 1 species genus 2 Microlunatus 2057 1 29404 0 31 Microlunatus phosphovorus 1 species 29405 2026 0 genus Tessaracoccus 5 0 187 1 10334 72763 species Tessaracoccus flavus 1 0 1971 1610493 species Tessaracoccus aquimaris 1 0 3084 1332264 399497 2090 0 Tessaracoccus flavescens 1 species 0 2635419 3002 no rank 1 Tessaracoccus sp. T2.5-30 1 species 3002 1909732 0 genus Propionibacterium 3 5604 1 1743 0 48 Propionibacterium freudenreichii 1 species 0 4746 1744 0 2608905 810 1 no rank 671223 810 0 Propionibacterium sp. oral taxon 193 1 species 1836 2801844 0 genus 1 0 1750 1836 species Pseudopropionibacterium propionicum 1 0 435 1 17906 85015 family 13 Nocardioidaceae 1 2340 116071 14 0 2 Micropruina genus 0 2326 75385 1 Micropruina glycogenica species genus 4 Nocardioides 1 7240 1839 0 83 1 Nocardioides dokdonensis species 0 2662 450734 0 2340 2615069 no rank 1 2340 196162 0 species Nocardioides sp. JS614 1 0 2155 2045452 species 1 Nocardioides sp. 78 genus Kribbella 2 0 98 182639 1 2845 Kribbella flavida 1 species 0 182640 2747 0 36 2044 1 3092 genus 2 Pimelobacter 1 Pimelobacter simplex species 0 2045 3056 1 1954 2040 37 0 Aeromicrobium 2 genus Aeromicrobium erythreum 1 species 2041 1917 0 order 26 Bifidobacteriales 394692 1 85004 0 287 25 Bifidobacteriaceae family 15371 0 31953 1 394405 1678 373528 1 0 2583 genus Bifidobacterium 19 1686 43024 1 14880 0 2 Bifidobacterium catenulatum species 1 Bifidobacterium kashiwanohense subspecies 0 630129 28144 0 1691 1812 Bifidobacterium indicum 1 species 1 Bifidobacterium scardovii species 0 6637 158787 species Bifidobacterium dentium 1 0 6661 1689 1694 5948 0 species Bifidobacterium pseudolongum 1 1 Bifidobacterium breve species 1685 32647 0 Bifidobacterium actinocoloniiforme 1 species 0 638619 2039 0 2428 1684 Bifidobacterium asteroides 1 species 216816 87438 0 species 1 Bifidobacterium longum 0 35760 3776 species 1 Bifidobacterium choerinum species Bifidobacterium bifidum 1 0 1681 48042 1 Bifidobacterium pseudocatenulatum species 0 99505 28026 species Bifidobacterium adolescentis 1 1680 12216 0 species 1 Bifidobacterium thermophilum 0 6110 33905 1 Bifidobacterium coryneforme species 0 1638 1687 species 1 Bifidobacterium animalis 28025 4945 0 Bifidobacterium angulatum 1 species 6079 1683 0 1 genus 0 1299 196081 species 1 Scardovia inopinata 1299 78259 0 1633 1 2701 0 1 genus Gardnerella 2 species 1 Gardnerella vaginalis 2702 1632 0 Parascardovia 2 genus 196082 1 2574 2 0 species 1 Parascardovia denticolens 0 2572 78258 90 0 2037 40145 1 20 Actinomycetales order family 19 Actinomycetaceae 2049 1 40055 0 5818 13 0 28263 870 1 Arcanobacterium 2 genus 857 28264 0 species Arcanobacterium haemolyticum 1 genus Trueperella 2 0 16 2503 1 1069494 0 1661 2487 species 1 Trueperella pyogenes 1654 1 21656 489 0 Actinomyces 9 genus 0 8797 2609248 3 no rank Actinomyces sp. oral taxon 897 1 species 2081702 2462 0 1851395 2478 0 1 Actinomyces sp. Chiba101 species 712122 3857 0 species Actinomyces sp. oral taxon 414 1 1 Actinomyces radicidentis species 111015 3163 0 species Actinomyces sp. VUL4_3 1 0 1912795 534 species 1 Actinomyces gaoshouyii 0 1920 1960083 species Actinomyces pacaensis 1 1852377 3533 0 1 Actinomyces oris species 544580 3220 0 1653174 1 1702 5 0 2 Actinotignum genus species 1 Actinotignum schaalii 1697 59505 0 3143 2529408 0 genus 1 0 52773 3143 species 1 Actinomyces meyeri 214 0 1 4363 2050 Mobiluncus 2 genus 0 2051 4149 species 1 Mobiluncus curtisii order 82 Streptomycetales 0 542 85011 262435 1 family 81 Streptomycetaceae 2062 1 261893 0 2103 genus Kitasatospora 5 0 172 2063 1 15660 no rank 1 0 2633591 4667 1 Kitasatospora sp. MMS16-BH015 species 0 2018025 4667 species Kitasatospora setae 1 2066 4600 0 1 Kitasatospora aureofaciens species 0 3343 1894 Kitasatospora albolonga 1 species 0 2878 68173 1 244130 1883 0 9048 genus 75 Streptomyces 1 Streptomyces lavendulae species 0 1914 2682 Streptomyces bingchenggensis 1 species 0 4544 379067 3399 553510 0 species Streptomyces gilvosporeus 1 2406 193462 0 species 1 Streptomyces niveus 0 33903 2572 species 1 Streptomyces avermitilis 1038928 2804 0 species Streptomyces xinghaiensis 1 68249 5801 0 species Streptomyces pactum 1 2633 38300 0 species 1 Streptomyces pristinaespiralis 70811 2593676 0 24 no rank 0 1661694 2370 species Streptomyces sp. Tue 6075 1 3082 2135430 0 Streptomyces sp. P3 1 species 0 2830 1964449 Streptomyces sp. 3211 1 species 0 1262452 3341 species Streptomyces sp. 769 1 Streptomyces sp. RTd22 1 species 4135 1841249 0 3012 1849967 0 1 Streptomyces sp. SAT1 species 1961713 2981 0 species Streptomyces sp. MOE7 1 0 465541 3137 species 1 Streptomyces sp. Mg1 2234 1837283 0 species 1 Streptomyces sp. S8 1 Streptomyces sp. CdTB01 species 0 3731 1725411 1984801 2709 0 species 1 Streptomyces sp. CLI2509 0 1649184 2488 Streptomyces sp. CFMR 7 1 species 234612 2366 0 1 Streptomyces sp. TN58 species 0 1751294 2594 Streptomyces sp. 4F 1 species 3293 1561022 0 species Streptomyces sp. CCM_MD2014 1 0 2010 862751 1 Streptomyces sp. SirexAA-E species 0 2499 1812480 1 Streptomyces sp. fd1-xmd species Streptomyces sp. CMB-StM0423 1 species 3859 2059884 0 1265601 2209 0 species Streptomyces sp. PAMC 26508 1 1972846 2718 0 Streptomyces sp. Sge12 1 species 1 Streptomyces sp. CNQ-509 species 0 444103 3863 species 1 Streptomyces sp. WAC00288 2438 2094021 0 0 206662 3135 species 1 Streptomyces sp. FR-008 0 3777 1495638 species 1 Streptomyces sp. M56 1912 6939 0 species Streptomyces hygroscopicus 1 species Streptomyces lincolnensis 1 1915 3704 0 1 Streptomyces peucetius species 2680 1950 0 species 1 Streptomyces alboflavus 67267 2992 0 Streptomyces leeuwenhoekii 1 species 2952 1437453 0 Streptomyces sp. XZHG99 1 species 2049881 2554 0 408015 3049 0 species Streptomyces xiamenensis 1 species Streptomyces noursei 1 3005 1971 0 75293 3088 0 species 1 Streptomyces autolyticus 0 68214 3043 species 1 Streptomyces griseochromogenes 1355015 2553 0 1 Streptomyces pluripotens species species 1 Streptomyces fulvissimus 0 68202 2086 0 3082 362257 Streptomyces vietnamensis 1 species 1 Streptomyces scabiei species 0 3752 1930 0 1940 2649 1 Streptomyces albireticuli species 0 1477431 5390 species group 2 0 42239 2591 Streptomyces sampsonii 1 species Streptomyces coelicolor 1 species 0 1902 2799 Streptomyces violaceoruber 1 species 2361 1935 0 2967 1916 0 Streptomyces lividans 1 species species Streptomyces rubrolavendulae 1 2195 285473 0 0 3413 92644 species 1 Streptomyces malaysiensis 1 Streptomyces lydicus species 0 47763 8184 Streptomyces ambofaciens 1 species 1889 3075 0 species Streptomyces glaucescens 1 0 1907 2881 0 1616117 3233 Streptomyces formicae 1 species Streptomyces cattleya 1 species 29303 3637 0 0 1969 2764 species 1 Streptomyces chartreusis 2 species group 0 5265 629295 species subgroup 1 2662 1482558 0 1 Streptomyces globisporus species 0 1908 2662 1482596 2603 0 species subgroup 1 0 2603 1911 Streptomyces griseus 1 species 1 Streptomyces alfalfae species 1642299 2989 0 species Streptomyces parvulus 1 0 2948 146923 1 Streptomyces albus species 1888 5808 0 0 3247 164348 species 1 Streptomyces puniciscabiei 0 3022 1926 Streptomyces reticuli 1 species species Streptomyces albulus 1 3167 68570 0 3002 42684 0 species Streptomyces collinus 1 1 Streptomyces cyaneogriseus species 0 68192 3098 0 1901 2885 species Streptomyces clavuligerus 1 species 1 Streptomyces venezuelae 5307 54571 0 1 Streptomyces sp. S10(2016) species 0 1783515 3217 1 Streptomyces pratensis species 0 1905 1169025 Streptomyces violaceusniger 1 species 0 68280 3342 Acidothermales 4 order 1643683 1 920 97 0 85032 1 823 7 0 Acidothermaceae 3 family 28048 1 816 0 12 genus Acidothermus 2 0 28049 804 1 Acidothermus cellulolyticus species order 4 Glycomycetales 1 3165 85014 0 5 3 Glycomycetaceae family 115 0 85034 3160 1 genus Stackebrandtia 2 1 3045 283810 0 30 species Stackebrandtia nassauensis 1 283811 3015 0 1 0 1 2118 622450 Actinopolysporales 4 order 3 Actinopolysporaceae family 65 0 622451 1 2117 1849 1 2052 65 0 Actinopolyspora 2 genus 0 1987 414996 Actinopolyspora erythraea 1 species order Micrococcales 146 0 1911 85006 1 199232 85022 511 0 family 2 genus Jonesia 2 0 6 511 1 43673 43674 505 0 species Jonesia denitrificans 1 9 Intrasporangiaceae family 52 0 8650 1 85021 genus 2 Arsenicicoccus 2848 1 267408 0 41 0 2663846 2807 1 no rank species Arsenicicoccus sp. oral taxon 190 1 2807 1658671 0 1 2253 265976 42 0 2 Serinicoccus genus species 1 Serinicoccus sp. JLT9 0 1758689 2211 76 0 53457 1854 1 2 Janibacter genus 857417 1778 0 species 1 Janibacter indicus 2 Intrasporangium genus 53357 1643 1 8 0 species Intrasporangium calvum 1 53358 1635 0 family 11 Dermabacteraceae 1 17253 85020 0 137 2 Devriesea genus 472568 888 1 15 0 1 Devriesea agamarum species 0 873 472569 6 Brachybacterium genus 262 0 15330 1 43668 0 43669 3525 species 1 Brachybacterium faecium 1 Brachybacterium sp. VR2415 species 2017485 2794 0 species 1 Brachybacterium ginsengisoli 0 1331682 2620 0 2623841 2796 1 no rank species Brachybacterium sp. P6-10-X1 1 1903186 2796 0 0 2017484 3333 species 1 Brachybacterium sp. VM2412 genus 2 Dermabacter 0 4 1 898 36739 894 1630135 0 Dermabacter vaginalis 1 species 85016 1 7916 0 69 family 6 Cellulomonadaceae 0 198 1707 1 7847 genus Cellulomonas 5 0 1711 2230 Cellulomonas flavigena 1 species 0 1663 11 species 1 Cellulomonas gilvus 2237 1708 0 1 Cellulomonas fimi species 2620175 1519 0 1 no rank 1 Cellulomonas sp. PSBB021 species 0 1519 2003551 3 Brevibacteriaceae family 2982 1 85019 49 0 Brevibacterium 2 genus 50 0 1 2933 1696 1 Brevibacterium linens species 0 1703 2883 0 577468 272 no rank 2 genus Tropheryma 2 0 7 2038 1 272 2039 265 0 1 Tropheryma whipplei species 0 19 1 952 85018 family Dermatophilaceae 3 Dermatophilus 2 genus 1 933 1862 11 0 Dermatophilus congolensis 1 species 1863 922 0 79491 1 1268 3465 0 Micrococcaceae 40 family 1 genus 0 980 2078575 0 1618207 980 Arthrobacter sp. IHBB 11108 1 species 1 2756 1742989 0 13 genus 2 Glutamicibacter species Glutamicibacter arilaitensis 1 2743 256701 0 30 0 1868332 1 1631 Neomicrococcus 2 genus 0 556325 1601 1 Neomicrococcus aestuarii species genus 2 Renibacterium 0 1 1645 604 1 species Renibacterium salmoninarum 1 0 1646 603 genus 4 Pseudarthrobacter 6585 1 1742993 0 62 species Pseudarthrobacter sulfonivorans 1 0 121292 2435 species Pseudarthrobacter phenanthrenivorans 1 361575 1516 0 1 Pseudarthrobacter chlorophenolicus species 2572 85085 0 0 11 1 19185 32207 genus 3 Rothia 43675 17460 0 species Rothia mucilaginosa 1 1 Rothia dentocariosa species 1714 2047 0 Kocuria 4 genus 115 0 1 6989 57493 species Kocuria rhizophila 1 72000 2479 0 0 2354 446860 species Kocuria flava 1 species 1 Kocuria palustris 2041 71999 0 1 2163 596707 22 0 2 Sinomonas genus species 1 Sinomonas atrocyanea 0 2141 37927 16 0 1742992 1 1424 Paenarthrobacter 2 genus species 1 Paenarthrobacter aurescens 43663 1408 0 genus Micrococcus 2 2089 1 1269 0 29 1 Micrococcus luteus species 2060 1270 0 15 Arthrobacter genus 31620 1 1663 593 0 25208 235627 0 no rank 12 1 Arthrobacter sp. LS16 species 1690248 2722 0 species Arthrobacter sp. Rue61a 1 0 1118963 1234 species 1 Arthrobacter sp. PAMC 25486 1845 1494608 0 0 290399 2723 1 Arthrobacter sp. FB24 species 2943 1652545 0 1 Arthrobacter sp. YC-RL1 species 0 2211 1849032 species 1 Arthrobacter sp. U41 1431 1771959 0 species Arthrobacter sp. ATCC 21022 1 2079227 1649 0 Arthrobacter sp. PGP41 1 species 0 1516 2020486 1 Arthrobacter sp. YN species species 1 Arthrobacter sp. ZXY-2 0 1750 1806905 1704044 2663 0 Arthrobacter sp. ERGS1:01 1 species 1 Arthrobacter sp. QXT-31 species 0 2521 1357915 1 Arthrobacter crystallopoietes species 0 2317 37928 0 656366 3502 1 Arthrobacter alpinus species 1 2095 125316 22 0 3 Beutenbergiaceae family 1 2073 84756 81 0 2 Beutenbergia genus 0 84757 1992 Beutenbergia cavernae 1 species 0 121 1 6095 145357 family 7 Dermacoccaceae genus Dermacoccus 2 0 15 57495 1855 1 1274 1840 0 Dermacoccus nishinomiyaensis 1 species 1 1799 745364 39 0 Luteipulveratus 2 genus Luteipulveratus mongoliensis 1 species 0 1760 571913 genus 2 Kytococcus 57499 1 2320 0 29 species Kytococcus sedentarius 1 1276 2291 0 family Promicromonosporaceae 9 0 113 1 12138 85017 0 128 1 4696 157920 genus Cellulosimicrobium 3 2624466 1729 0 1 no rank 0 1729 1980001 species 1 Cellulosimicrobium sp. TH-20 Cellulosimicrobium cellulans 1 species 2839 1710 0 genus 3 Isoptericola 0 112 1 4685 254250 0 139208 2253 species Isoptericola variabilis 1 species Isoptericola dokdonensis 1 372663 2320 0 genus Xylanimonas 2 186188 2644 1 0 35 1 Xylanimonas cellulosilytica species 2609 186189 0 16 0 145360 2204 1 3 Sanguibacteraceae family 2 Sanguibacter genus 60919 2188 1 129 0 species Sanguibacter keddieii 1 0 60920 2059 family Microbacteriaceae 47 0 852 1 56762 85023 0 332 1705353 1 genus 708131 332 0 1 Aurantimicrobium minutum species 14 Microbacterium genus 567 0 1 22333 33882 0 1635 300019 1 Microbacterium paludicola species 0 13559 2609290 8 no rank 2103230 1413 0 species Microbacterium sp. str. 'China' 1 1714373 2175 0 1 Microbacterium sp. No. 7 species 0 1696072 1599 species Microbacterium sp. CGR1 1 species Microbacterium sp. 1.5R 1 1812 1916917 0 1341 1938334 0 1 Microbacterium sp. TPU 3598 species species Microbacterium sp. XT11 1 1443 367477 0 1 Microbacterium sp. PAMC 28756 species 1795053 1906 0 0 1906742 1870 1 Microbacterium sp. BH-3-3-3 species 0 162426 2155 species Microbacterium hominis 1 species 1 Microbacterium testaceum 0 2033 1776 Microbacterium aurum 1 species 36805 1596 0 species 1 Microbacterium chocolatum 84292 1045 0 Agromyces 2 genus 3 0 1 2101 33877 Agromyces aureus 1 species 0 2098 453304 1 4647 69578 0 89 genus Cryobacterium 3 1 Cryobacterium arcticum species 0 2213 670052 2649013 2345 0 1 no rank species Cryobacterium sp. LW097 1 0 1978566 2345 Cnuibacter 2 genus 16 0 1759331 1582 1 0 1619308 1566 1 Cnuibacter physcomitrellae species no rank 2 1655488 550 0 0 1655489 550 2 clade 2 genus 0 529883 550 0 535712 244 species Candidatus Rhodoluna planktonica 1 species Rhodoluna lacicola 1 0 306 529884 107 0 2034 4626 1 4 Curtobacterium genus species Curtobacterium pusillum 1 1495 69373 0 no rank 2 257496 3024 0 0 1905847 1523 1 Curtobacterium sp. BH-2-1-1 species 1501 1561023 0 species Curtobacterium sp. MR_MD2014 1 1 1969 33886 0 30 genus Rathayibacter 3 33888 1451 0 Rathayibacter tritici 1 species species 1 Rathayibacter toxicus 145458 488 0 genus Frondihabitans 2 0 6 447237 2147 1 2626248 2141 0 1 no rank 1795630 2141 0 species Frondihabitans sp. PAMC 28766 1 337004 1254 1 0 9 genus 2 Microcella species 1 Microcella alkaliphila 0 1245 279828 6 Clavibacter genus 351 0 7868 1 1573 1 7517 28447 0 1465 species Clavibacter michiganensis 5 Clavibacter nebraskensis 1 subspecies 0 1513 31963 0 1874630 1410 Clavibacter capsici 1 subspecies 0 1232 33014 Clavibacter insidiosus 1 subspecies 31964 1897 0 Clavibacter sepedonicus 1 subspecies 518733 1 2040 6 0 Microterricola 2 genus 0 2034 412690 species Microterricola viridarii 1 0 488 1434032 1 genus 1 Pontimonas salivibrio species 0 1159327 488 genus Leifsonia 2 0 26 1 3973 110932 0 3947 1575 Leifsonia xyli 1 species 0 23 1643682 9147 1 order Geodermatophilales 8 0 243 1 9124 85030 family 7 Geodermatophilaceae 1 2715 1860 0 27 genus Geodermatophilus 2 0 2688 1861 species Geodermatophilus obscurus 1 genus 2 Blastococcus 0 15 38501 1 2486 0 138336 2471 1 Blastococcus saxobsidens species 39 0 3680 1 88138 2 Modestobacter genus species Modestobacter marinus 1 0 477641 3641 order 4 Kineosporiales 622452 1 2790 0 17 1 2773 83778 0 64 family 3 Kineosporiaceae 2 Kineococcus genus 15 0 33981 1 2709 2694 131568 0 Kineococcus radiotolerans 1 species 4 Nakamurellales order 44 0 1643684 1 3317 3 Nakamurellaceae family 1 3273 85031 99 0 genus Nakamurella 2 1 3174 53460 0 54 Nakamurella multipartita 1 species 0 53461 3120 1643818 2229 0 2 no rank 2229 1 147067 0 20 genus 2 Thermobispora 0 2209 2006 species 1 Thermobispora bispora 1 45931 85008 0 90 order Micromonosporales 20 45841 1 28056 780 0 Micromonosporaceae 19 family Salinispora 3 genus 1 4506 168694 26 0 1 Salinispora arenicola species 0 2307 168697 species 1 Salinispora tropica 0 2173 168695 genus Plantactinospora 4 1 10342 673534 0 158 10184 2631981 0 no rank 3 0 2071627 3477 species Plantactinospora sp. BB1 1 1 Plantactinospora sp. BC1 species 0 2108470 3350 2024580 3357 0 species Plantactinospora sp. KBS50 1 1865 1 18636 344 0 6 Actinoplanes genus 0 1866 3669 species Actinoplanes missouriensis 1 species Actinoplanes friuliensis 1 0 196914 3705 3 no rank 0 10918 2626549 134676 3330 0 1 Actinoplanes sp. SE50/110 species 1 Actinoplanes sp. N902-109 species 649831 4258 0 0 2033844 3330 Actinoplanes sp. SE50 1 species 13 84593 0 Verrucosispora 1 genus 4 Micromonospora genus 1 11564 1873 217 0 0 47850 3996 1 Micromonospora aurantiaca species no rank 1 4175 2617518 0 species 1 Micromonospora sp. L5 0 4175 648999 1 Verrucosispora maris species 0 1003110 3176 order Corynebacteriales 163 85007 1 254152 0 2061 no rank 2 697024 684 0 genus Lawsonella 2 0 30 1 684 1847725 Lawsonella clevelandensis 1 species 0 654 1528099 family 3 Segniliparaceae 0 10 316606 1 1346 29 0 1336 1 286801 Segniliparus 2 genus 0 1307 286802 Segniliparus rotundus 1 species family 57 Mycobacteriaceae 90102 1 1762 0 345 genus 5 7097 670516 0 species Mycobacterium abscessus 1 2610 36809 0 species Mycobacterium stephanolepidis 1 0 1520670 1152 1073 1774 0 Mycobacterium chelonae 1 species species 1 Mycobacterium immunogenum 83262 1241 0 1 Mycobacterium saopaulense species 1021 1578165 0 genus 2 Hoyosella 0 6 697025 862 1 species Hoyosella subflava 1 639313 856 0 13 genus 0 1866885 27496 0 2649 1804 Mycobacterium gilvum 1 species species Mycobacterium smegmatis 1 0 1772 2123 1 Mycobacterium chubuense species 0 1800 1845 0 110539 2124 species 1 Mycobacterium vanbaalenii 1 Mycobacterium litorale species 758802 1846 0 1 Mycobacterium phlei species 0 1771 2687 species 1 Mycobacterium goodii 0 2308 134601 species Mycobacterium neoaurum 1 1852 1795 0 0 2216 1810 Mycobacterium vaccae 1 species 0 1791 2524 species 1 Mycobacterium aurum 0 1478 36814 1 Mycobacterium rhodesiae species 0 1505 1766 Mycobacterium fortuitum 1 species 0 2339 1797 1 Mycobacterium thermoresistibile species genus 34 Mycobacterium 0 4289 1763 1 50680 Mycobacterium ulcerans 1 species 1952 1809 0 species 1 Mycobacterium leprae 1769 424 0 species group 4 0 77643 2933 2186 1 1773 0 812 species Mycobacterium tuberculosis 3 biotype 1 Mycobacterium africanum 0 649 33894 0 1765 725 1 Mycobacterium bovis biotype Mycobacterium canettii 1 species 0 747 78331 0 1856 2249310 species group 1 722731 1856 0 1 Mycobacterium shigaense species 1802 1768 0 species 1 Mycobacterium kansasii 8 species group 9751 120793 0 1 Mycobacterium colombiense species 0 2150 339268 565 0 1767 2430 1 4 Mycobacterium intracellulare species 1203599 489 0 1 Mycobacterium yongonense subspecies 1 Mycobacterium indicus pranii subspecies 0 35617 410 966 222805 0 Mycobacterium chimaera 1 subspecies species Mycobacterium marseillense 1 0 701042 1021 1138383 322 0 species 1 Mycobacterium paraintracellulare 0 1764 3828 1 Mycobacterium avium species 482462 2318 0 Mycobacterium dioxanotrophicus 1 species 0 1983 1781 1 Mycobacterium marinum species species 1 Mycobacterium haemophilum 707 29311 0 2642494 21156 0 no rank 13 1273687 1404 0 Mycobacterium sp. VKM Ac-1817D 1 species 1 Mycobacterium sp. YC-RL4 species 0 2167 1682113 species Mycobacterium sp. JLS 1 164757 1468 0 0 1815 2051552 species Mycobacterium sp. PYR15 1 species 1 Mycobacterium sp. djl-10 0 2906 1879023 Mycobacterium sp. MCS 1 species 1486 164756 0 1545728 1499 0 species 1 Mycobacterium sp. EPa45 1168287 413 0 species Mycobacterium sp. MOTT36Y 1 189918 1524 0 species 1 Mycobacterium sp. KMS 1920667 2194 0 1 Mycobacterium sp. WY10 species Mycobacterium sp. NRRL B-3805 1 species 0 1570328 1852 Mycobacterium sp. JS623 1 species 0 212767 1532 896 1561223 0 species Mycobacterium sp. QIA-37 1 261524 1509 0 species 1 Mycobacterium liflandii 0 1073531 3622 genus 2 species 1 Mycobacterium sinense 0 1780 875328 1842 1788 0 1 Mycobacterium terrae species Tsukamurellaceae 4 family 1 4292 85028 42 0 3 Tsukamurella genus 72 0 2060 4250 1 0 2661 57704 1 Tsukamurella tyrosinosolvens species species Tsukamurella paurometabola 1 1517 2061 0 family Corynebacteriaceae 52 76912 1 1653 0 713 2177 0 1 76199 1716 51 Corynebacterium genus 0 1372 161899 species 1 Corynebacterium singulare Corynebacterium phocae 1 species 0 161895 1187 919 258224 0 species Corynebacterium resistens 1 0 1603 161896 Corynebacterium camporealensis 1 species 0 65058 1073 Corynebacterium ulcerans 1 species 0 38305 3037 Corynebacterium vitaeruminis 1 species 89154 1627 0 Corynebacterium terpenotabidum 1 species species 1 Corynebacterium aurimucosum 1719 169292 0 species 1 Corynebacterium casei 1117 160386 0 0 734 1719 species Corynebacterium pseudotuberculosis 1 Corynebacterium uterequi 1 species 1579 1072256 0 species Corynebacterium diphtheriae 1 1129 1717 0 1263 1404244 0 species Corynebacterium glyciniphilum 1 0 1718 1716 species 1 Corynebacterium glutamicum Corynebacterium doosanense 1 species 0 1121358 1985 0 1231000 1429 Corynebacterium lactis 1 species 0 92706 831 species 1 [Brevibacterium] flavum 1 Corynebacterium kutscheri species 484 35755 0 0 28028 785 species 1 Corynebacterium flavescens 203263 1479 0 1 Corynebacterium aquilae species Corynebacterium sphenisci 1 species 191493 2409 0 0 161879 784 species 1 Corynebacterium kroppenstedtii species Corynebacterium cystitidis 1 0 35757 829 2377 349751 0 Corynebacterium marinum 1 species 575200 1753 0 species Corynebacterium maris 1 611 571915 0 1 Corynebacterium mustelae species 0 725 1050174 species Corynebacterium epidermidicanis 1 2356 1230998 0 species 1 Corynebacterium frankenforstense 0 730 1721 Corynebacterium callunae 1 species 0 1231 156978 1 Corynebacterium imitans species species Corynebacterium humireducens 1 2063 1223514 0 0 981 1697 1 Corynebacterium ammoniagenes species Corynebacterium jeikeium 1 species 0 3001 38289 0 2624378 2335 no rank 2 0 1487956 1213 species 1 Corynebacterium sp. ATCC 6931 0 1122 702967 species Corynebacterium sp. NML98-0116 1 1 Corynebacterium glaucum species 0 187491 1818 43770 2916 0 Corynebacterium striatum 1 species 0 2219 225326 species 1 Corynebacterium halotolerans species Corynebacterium efficiens 1 0 1671 152794 1398 136857 0 Corynebacterium testudinoris 1 species 0 1652495 1143 1 Corynebacterium crudilactis species species 1 Corynebacterium simulans 2442 146827 0 191610 1324 0 species 1 Corynebacterium atypicum 0 108486 2040 Corynebacterium falsenii 1 species species Corynebacterium ureicelerivorans 1 1763 401472 0 species 1 Corynebacterium stationis 1705 995 0 species Corynebacterium urealyticum 1 43771 1538 0 Corynebacterium variabile 1 species 0 1727 1787 0 1408191 1050 species Corynebacterium deserti 1 0 665 42817 species Corynebacterium argentoratense 1 85026 1 11858 0 78 family 9 Gordoniaceae Gordonia 8 genus 218 0 2053 1 11780 Gordonia phthalatica 1 species 0 1792 1136941 1569 1004901 0 Gordonia iterans 1 species 1 Gordonia terrae species 0 2055 2173 species Gordonia bronchialis 1 0 2054 1514 2657482 3001 0 no rank 2 Gordonia sp. KTR9 1 species 1453 337191 0 Gordonia sp. YC-JH1 1 species 0 1548 2059875 species Gordonia polyisoprenivorans 1 0 1513 84595 4 Dietziaceae family 16 0 1 3211 85029 37914 1 3195 35 0 Dietzia 3 genus 0 2617939 1797 1 no rank 0 712270 1797 species 1 Dietzia sp. oral taxon 368 0 1363 499555 species Dietzia timorensis 1 family 31 Nocardiaceae 63686 1 85025 0 391 genus 23 Rhodococcus 0 1521 1827 38305 1 1 Rhodococcus erythropolis species 0 1463 1833 Rhodococcus opacus 1 species 0 4909 37919 1 Rhodococcus jostii species 0 132919 2111 2444 1830 0 species Rhodococcus ruber 1 0 1829 1505 species Rhodococcus rhodochrous 1 Rhodococcus fascians 1 species 1248 1828 0 species Rhodococcus hoagii 1 0 43767 1871 0 192944 16442 no rank 12 species 1 Rhodococcus sp. PBTS 1 0 1653478 1934 species Rhodococcus sp. H-CA8f 1 999 1727214 0 species 1 Rhodococcus sp. PBTS 2 1653479 1422 0 species Rhodococcus sp. WMMA185 1 0 912 679318 0 1320 1564114 species Rhodococcus sp. B7740 1 1367 1570939 0 1 Rhodococcus sp. 2G species species Rhodococcus sp. BH4 1 0 846 1807790 2424 1033922 0 Rhodococcus sp. WB1 1 species 0 1045808 999 species 1 Rhodococcus sp. YL-1 Rhodococcus sp. MTM3W5.2 1 species 1778 1805827 0 species Rhodococcus sp. 008 1 893 1723645 0 1548 935199 0 1 Rhodococcus sp. p52 species 0 334542 1046 species 1 Rhodococcus qingshengii species 1 Rhodococcus aetherivorans 0 2326 191292 1 Rhodococcus pyridinivorans species 103816 1419 0 7 Nocardia genus 1 24990 1817 433 0 455432 3467 0 species Nocardia terpenica 1 0 37332 3154 species Nocardia seriolae 1 135487 5469 0 Nocardia cyriacigeorgica 1 species 0 37330 2280 Nocardia nova 1 species 0 37326 5883 1 Nocardia brasiliensis species 0 37329 4304 species 1 Nocardia farcinica order Streptosporangiales 16 85012 1 30015 0 200 family Streptosporangiaceae 5 2004 1 13052 0 164 genus Nonomuraea 2 0 83 1 7732 83681 1 no rank 2593643 7649 0 1909395 7649 0 1 Nonomuraea sp. ATCC 55076 species 5156 1 2000 104 0 2 Streptosporangium genus 0 5052 2001 species 1 Streptosporangium roseum 174 0 83676 1 12306 7 Nocardiopsaceae family Thermobifida 2 genus 8 0 83677 1 1983 Thermobifida fusca 1 species 2021 1975 0 4 Nocardiopsis genus 152 0 2013 10149 1 0 2622 53437 Nocardiopsis alba 1 species 4099 2014 0 species 1 Nocardiopsis dassonvillei species Nocardiopsis gilva 1 0 280236 3276 4457 1 2012 0 46 family 3 Thermomonosporaceae 76 0 2019 4411 1 Thermomonospora 2 genus 4335 2020 0 species Thermomonospora curvata 1 0 52018 618 no rank 1 species 1 Actinobacteria bacterium IMCC26256 1650658 618 0 2039638 3815 1 0 32 order 12 Candidatus Nanopelagicales family 11 2162846 3783 0 0 21 1 2723 622681 genus Candidatus Planktophila 7 1 Candidatus Planktophila vernalis species 0 385 1884907 284 573600 0 1 Candidatus Planktophila limnetica species 0 1884905 630 1 Candidatus Planktophila versatilis species species 1 Candidatus Planktophila lacus 517 1884913 0 1884904 432 0 1 Candidatus Planktophila sulfonica species 0 454 1884914 species Candidatus Planktophila dulcis 1 0 22 1 1060 2039639 genus 4 Candidatus Nanopelagicus 1 Candidatus Nanopelagicus limnes species 1884634 269 0 species Candidatus Nanopelagicus hibericus 1 1884915 308 0 0 461 1884916 Candidatus Nanopelagicus abundans 1 species 7 Frankiales order 85013 1 10962 120 0 220 0 74712 1 10842 6 Frankiaceae family 0 268 1854 1 10622 genus 5 Frankia 1345 106370 0 species 1 Frankia casuarinae 1 no rank 0 2788 2632575 0 2788 298653 Frankia sp. EAN1pec 1 species Frankia alni 1 species 0 1859 2553 Frankia inefficax 1 species 0 298654 3668 85010 1 88145 244 0 Pseudonocardiales 41 order 0 1226 1 87901 2070 family Pseudonocardiaceae 40 0 18 43356 1 5135 genus 2 Kutzneria 0 5117 43357 species Kutzneria albida 1 0 502 1813 21002 1 genus 7 Amycolatopsis 2881 1814 0 1 Amycolatopsis methanolica species 208439 2519 0 species Amycolatopsis japonica 1 1 Amycolatopsis orientalis species 0 31958 4958 0 6212 2618356 no rank 2 Amycolatopsis sp. BJA-103 1 species 2886 1911175 0 Amycolatopsis sp. AA4 1 species 1896961 3326 0 Amycolatopsis mediterranei 1 species 0 3930 33910 genus Saccharopolyspora 2 1835 1 3511 0 78 1 Saccharopolyspora erythraea species 3433 1836 0 41 0 1 2988 674734 Alloactinosynnema 2 genus 0 2947 2636053 no rank 1 0 2947 1653480 Alloactinosynnema sp. L-07 1 species genus 2 Lentzea 165301 3692 1 0 29 3663 1586287 0 1 Lentzea guizhouensis species genus Prauserella 2 0 20 142577 1 1702 1682 530584 0 species Prauserella marina 1 2029 1 4037 0 10 genus Kibdelosporangium 2 0 860235 4027 Kibdelosporangium phytohabitans 1 species Saccharothrix 2 genus 2071 4901 1 14 0 4887 103731 0 Saccharothrix espanaensis 1 species 254 0 40566 9128 1 Actinosynnema 3 genus 1 Actinosynnema mirum species 4328 40567 0 42197 4546 0 Actinosynnema pretiosum 1 species 1 genus 1851 1125 0 species Saccharomonospora viridis 1 1125 1852 0 Pseudonocardia 8 genus 497 0 1 17215 1847 no rank 6 0 13910 2619320 0 2693 445576 species Pseudonocardia sp. AL041005-10 1 species 1 Pseudonocardia sp. HH130629-09 1641402 2094 0 species 1 Pseudonocardia sp. EC080610-09 2438 1688404 0 0 1096868 2107 1 Pseudonocardia sp. EC080625-04 species 1690815 2124 0 species Pseudonocardia sp. HH130630-07 1 0 1096856 2454 species Pseudonocardia sp. EC080619-01 1 1 Pseudonocardia dioxanivorans species 2808 240495 0 genus 6 Actinoalloteichus 0 210 65496 1 12239 species 1 Actinoalloteichus sp. ADI127-7 0 2721 1612552 340345 1784 0 Actinoalloteichus hymeniacidonis 1 species 2 no rank 5341 2644606 0 0 2547 2072503 species 1 Actinoalloteichus sp. AHMU CJ021 species 1 Actinoalloteichus sp. GBA129-24 0 2794 1612551 species 1 Actinoalloteichus hoggarensis 2183 1470176 0 class Rubrobacteria 6 84995 1 4636 0 39 order 5 Rubrobacterales 1 4597 84996 0 87 0 51 1 4510 84997 family Rubrobacteraceae 4 0 97 4459 1 42255 genus 3 Rubrobacter 42256 1748 0 1 Rubrobacter radiotolerans species species Rubrobacter xylanophilus 1 2614 49319 0 22 0 1497346 1 4231 5 Thermoleophilia class 0 158 588673 1 4209 order 4 Solirubrobacterales 3 Conexibacteraceae family 16 0 320583 4051 1 0 105 4035 1 191494 genus Conexibacter 2 0 3930 191495 species Conexibacter woesei 1 class Acidimicrobiia 7 84992 1 3028 0 16 order 6 Acidimicrobiales 0 79 1 3012 84993 0 34 1 798 84994 family 3 Acidimicrobiaceae 4 0 1 764 53634 2 Acidimicrobium genus species 1 Acidimicrobium ferrooxidans 53635 760 0 family 2 2135 2448023 0 50 0 2135 1 682522 2 Ilumatobacter genus 2085 467094 0 1 Ilumatobacter coccineus species no rank 4 1133 1752188 0 0 350 1848756 species Actinobacteria bacterium IMCC26103 1 Actinobacteria bacterium IMCC26077 1 species 1848755 291 0 0 1848754 242 Actinobacteria bacterium IMCC19121 1 species 250 1848255 0 1 Actinobacteria bacterium IMCC25003 species 32 Coriobacteriia class 1914 0 1 314593 84998 Coriobacteriales 14 order 1418 0 1 186727 84999 family 7 Atopobiaceae 1643824 1 31394 0 723 Olsenella 4 genus 325 0 1 28559 133925 13677 1805478 0 species 1 Olsenella sp. Marseille-P2300 0 5209 2638792 no rank 1 species Olsenella sp. oral taxon 807 1 5209 712411 0 0 133926 9348 Olsenella uli 1 species 1380 1 0 genus 1 Atopobium genus 1 0 2111 2767353 0 2111 1382 species 1 Atopobium parvulum 0 2522 153915 1 84107 family 6 Coriobacteriaceae 6215 84113 0 no rank 1 species 1 Coriobacteriaceae bacterium 68-1-3 1531429 6215 0 Coriobacterium 2 genus 4622 1 33870 9 0 Coriobacterium glomerans 1 species 0 33871 4613 102106 140556 1 97 0 Collinsella 2 genus species Collinsella aerofaciens 1 0 74426 140459 1 125952 1643822 2022 0 Eggerthellales 17 order 1643826 1 123930 0 22674 family 16 Eggerthellaceae genus 2 Denitrobacterium 0 10 5715 1 79603 species Denitrobacterium detoxificans 1 5705 79604 0 84108 1 11290 0 28 genus Slackia 2 11262 84110 0 1 Slackia heliotrinireducens species Adlercreutzia 2 genus 2 0 447020 1 20709 0 20707 446660 1 Adlercreutzia equolifaciens species 0 198 84111 1 31855 genus 3 Eggerthella no rank 1 5201 2648737 0 0 5201 502558 Eggerthella sp. YY7918 1 species species 1 Eggerthella lenta 0 84112 26456 genus Phoenicibacter 2 1981050 2454 1 0 2 1 Phoenicibacter massiliensis species 0 2452 1944646 1 genus 0 84162 1446 84163 1446 0 species 1 Cryptobacterium curtum 0 157 644652 27787 1 genus 3 Gordonibacter Gordonibacter massiliensis 1 species 0 13952 1841863 1 Gordonibacter urolithinfaciens species 0 13678 1335613 1719 67819 0 phylum 5 Fimbriimonadia 5 class 18 0 1 1719 1663419 order 4 Fimbriimonadales 0 27 1663425 1701 1 3 Fimbriimonadaceae family 1663426 1 1674 19 0 0 1 1 1655 1005038 genus 2 Fimbriimonas 0 1654 1005039 1 Fimbriimonas ginsengisoli species 2 no rank 1859062 969 0 genus 2 Thermobaculum 0 54 969 1 262406 Thermobaculum terrenum 1 species 915 166501 0 48 Chloroflexi phylum 7 0 200795 31922 1 8 Anaerolineae class 292625 1 7347 13 0 7 Anaerolineales order 21 0 1 7334 292629 family Anaerolineaceae 6 292628 7313 1 0 44 2 Anaerolinea genus 2 0 1 2237 233189 species Anaerolinea thermophila 1 2235 167964 0 1 no rank 1324991 3515 0 1 Anaerolineaceae bacterium oral taxon 439 species 0 3515 1889813 genus Brevefilum 2 2019482 1 1517 0 1 0 1986204 1516 1 Brevefilum fermentans species class Dehalococcoidia 9 301297 1 5692 0 21 order Dehalococcoidales 5 0 1 1 3217 1202465 4 Dehalococcoidaceae family 1202464 3216 1 19 0 Dehalococcoides 3 genus 1 3197 61434 13 0 61435 2664 0 Dehalococcoides mccartyi 1 species 520 237581 0 1 no rank 0 520 1522671 Dehalococcoides sp. UCH007 1 species 0 10 670486 1 2454 genus 3 Dehalogenimonas 0 1839801 1425 species 1 Dehalogenimonas formicexedens Dehalogenimonas lykanthroporepellens 1 species 552810 1019 0 9 Thermomicrobia class 29 0 189775 1 3595 4 subclass 85000 2854 0 105 0 85001 2854 1 Sphaerobacterales 4 order 3 suborder 0 255728 2749 85002 2749 1 19 0 3 Sphaerobacteraceae family 2730 1 2056 32 0 Sphaerobacter 2 genus Sphaerobacter thermophilus 1 species 0 2057 2698 order 4 Thermomicrobiales 189776 1 712 0 6 189777 1 706 20 0 3 Thermomicrobiaceae family genus 2 Thermomicrobium 499 1 686 0 2 500 684 0 species Thermomicrobium roseum 1 1382928 1 5454 0 81 class Ardenticatenia 5 order 4 Ardenticatenales 1382929 1 5373 0 53 family 3 Ardenticatenaceae 1 5320 1382930 0 38 1988031 1 5282 46 0 Candidatus Promineofilum 2 genus Candidatus Promineofilum breve 1 species 5236 1806508 0 class 5 Caldilineae 1 2791 475962 0 23 475963 1 2768 0 14 order 4 Caldilineales family 3 Caldilineaceae 2754 1 475964 0 22 2 Caldilinea genus 2732 1 233191 23 0 0 2709 133453 Caldilinea aerophila 1 species class Chloroflexia 11 0 29 1 7036 32061 Chloroflexales 10 order 37 0 1 7007 32064 suborder 5 0 3027 1508594 family 5 Chloroflexaceae 0 4 3027 1 1106 4 Chloroflexus genus 1 3023 1107 76 0 152260 854 0 Chloroflexus aggregans 1 species 0 1049 1108 2093 1 species 2 Chloroflexus aurantiacus 0 480224 1044 1 Chloroflexus sp. Y-400-fl strain 0 1508595 3943 4 suborder family 4 Roseiflexaceae 0 59 3943 1 1508635 3 Roseiflexus genus 23 0 1 3884 120961 species 1 Roseiflexus castenholzii 0 2024 120962 1837 2609473 0 no rank 1 1 Roseiflexus sp. RS-1 species 1837 357808 0 2851 200938 0 phylum 5 5 Chrysiogenetes class 2851 1 118001 8 0 Chrysiogenales 4 order 1 2843 189769 40 0 3 Chrysiogenaceae family 1 2803 189770 2 0 genus 2 Desulfurispirillum 1 2801 393029 0 39 1 Desulfurispirillum indicum species 2762 936456 0 57723 19577 1 0 2 phylum 21 Acidobacteria 204432 1 17476 135 0 Acidobacteriia 17 class 332160 1 3618 61 0 4 Solibacterales order 332161 1 3557 0 45 family 3 Solibacteraceae Candidatus Solibacter 2 genus 26 0 332162 1 3512 species Candidatus Solibacter usitatus 1 332163 3486 0 186 0 13723 1 204433 12 Acidobacteriales order family Acidobacteriaceae 11 1 13537 204434 0 178 3 Granulicella genus 52 0 940557 1 4716 940614 2392 0 species Granulicella mallensis 1 940615 2272 0 Granulicella tundricola 1 species genus 2 Candidatus Koribacter 658061 2593 1 0 17 0 2576 658062 species Candidatus Koribacter versatilis 1 genus Terriglobus 3 0 59 392733 3221 1 species 1 Terriglobus roseus 392734 1944 0 870903 1218 0 1 Terriglobus saanensis species 22 0 2829 1 33973 Acidobacterium 2 genus 0 2807 33075 1 Acidobacterium capsulatum species class Blastocatellia 3 0 11 1 2099 1562566 genus Chloracidobacterium 2 0 8 2088 1 458032 species Chloracidobacterium thermophilum 1 0 2080 458033 phylum 43 0 200918 19561 12 0 1 19561 188708 Thermotogae 43 class 4 0 1 1444 1643946 Kosmotogales 6 order Kosmotogaceae 5 family 11 0 1643948 1 1440 1 377 1184396 7 0 2 Mesotoga genus 0 370 1184387 Mesotoga prima 1 species 0 651456 1052 2 genus 1 Kosmotoga pacifica species 0 1330330 507 0 651457 545 Kosmotoga olearia 1 species order 28 Thermotogales 0 18 1 12554 2419 188709 1 7060 0 35 family 17 Thermotogaceae 2335 4439 1 0 151 genus Thermotoga 11 species 1 Thermotoga profunda 0 536 1508420 0 370 93930 species 1 Thermotoga naphthophila species Thermotoga caldifontis 1 1508419 661 0 1 Thermotoga maritima species 0 2336 324 species 1 Thermotoga neapolitana 617 2337 0 2631113 1521 0 4 no rank 126738 585 0 species 1 Thermotoga sp. RQ7 Thermotoga sp. 2812B 1 species 296 1157948 0 species Thermotoga sp. RQ2 1 353 126740 0 287 1157947 0 Thermotoga sp. Cell2 1 species species 1 Thermotoga petrophila 0 259 93929 5 Pseudothermotoga genus 84 0 1 2586 1643951 0 581 57487 Pseudothermotoga hypogea 1 species 466 119394 0 1 Pseudothermotoga thermarum species 38322 718 0 species 1 Pseudothermotoga elfii species 1 Pseudothermotoga lettingae 0 177758 737 family Fervidobacteriaceae 10 0 7 1 5476 1643950 Thermosipho 5 genus 3655 1 2420 5 0 no rank 2 0 2676525 1601 species Thermosipho sp. 1063 1 791 1462747 0 810 1437364 0 species Thermosipho sp. 1070 1 2421 1061 0 species Thermosipho africanus 1 46541 988 0 species Thermosipho melanesiensis 1 Fervidobacterium 4 genus 5 0 2422 1814 1 species Fervidobacterium pennivorans 1 93466 767 0 331 2423 0 species 1 Fervidobacterium islandicum 2424 711 0 species 1 Fervidobacterium nodosum Petrotogales 8 order 8 0 1 5551 1643947 7 family 0 1643949 5543 2 Defluviitoga genus 1 908 1511648 1 0 0 907 1006576 species Defluviitoga tunisiensis 1 genus Petrotoga 2 28236 764 1 0 2 Petrotoga mobilis 1 species 0 762 69499 genus 3 Marinitoga 0 15 160798 3871 1 0 1895 149715 Marinitoga piezophila 1 species no rank 1 2640159 1961 0 1 Marinitoga sp. 1137 species 0 1961 1545835 0 1783257 104489 clade 99 phylum Planctomycetes 38 25344 1 203682 0 5 7 Phycisphaerae class 1 4831 666505 22 0 1 3241 666506 64 0 4 Phycisphaerales order Phycisphaeraceae 3 family 23 0 1 3177 666507 666508 1 3154 44 0 Phycisphaera 2 genus 547188 3110 0 species 1 Phycisphaera mikurensis 2 order 0 1568 2483366 0 1568 2483367 family 2 0 1568 2483368 genus 2 Phycisphaerae bacterium ST-PulAB-D4 1 species 0 648 1941349 0 920 1940790 Phycisphaerae bacterium L21-RPul-D3 1 species 0 108 19779 1 203683 class 27 Planctomycetia 3 order 0 1817 2691355 0 9 1914233 1 1817 family Gemmataceae 3 113 1808 1 5 0 Gemmata 2 genus 0 2622970 1803 1 no rank 1630693 1803 0 Gemmata sp. SH-PL17 1 species order 7 0 2691356 6069 Isosphaeraceae 7 family 105 0 1763524 1 6069 1763521 1 2867 0 23 genus 2 Paludisphaera 1 Paludisphaera borealis species 0 1387353 2844 genus 2 Singulisphaera 0 3 1 1756 466152 0 466153 1753 Singulisphaera acidiphila 1 species Isosphaera 2 genus 8 0 127 1341 1 1 Isosphaera pallida species 1333 128 0 2691354 2108 0 order 5 0 2691357 1303 4 family 123 736 1 1 0 2 Pirellula genus 0 735 125 species 1 Pirellula staleyi genus Rhodopirellula 2 0 1 265488 1 567 566 265606 0 1 Rhodopirellula baltica species 0 2691358 805 family 1 genus 1 0 805 1676125 1 Thermogutta terrifontis species 805 1331910 0 order 11 Planctomycetales 1 9677 112 0 332 126 1 9345 0 35 family Planctomycetaceae 10 1 1187 1649490 0 5 genus 2 Rubinisphaera 1 Rubinisphaera brasiliensis species 0 1182 119 1936111 1397 1 11 0 Fuerstia 2 genus 0 1891926 1386 species Fuerstia marisgermanicae 1 118 1 5674 0 67 genus 3 Planctomyces 0 5607 2648843 2 no rank species 1 Planctomyces sp. SH-PL62 0 3247 1636152 1 Planctomyces sp. SH-PL14 species 2360 1632864 0 1 1052 1649480 0 2 genus 2 Planctopirus species 1 Planctopirus limnophila 120 1050 0 3 class 0 729 2517206 9 0 1127829 729 1 3 Candidatus Brocadiales order 2 family 0 1127830 720 genus 2 Candidatus Kuenenia 1 720 380738 0 3 174633 717 0 Candidatus Kuenenia stuttgartiensis 1 species 3 phylum 0 256845 15205 70 0 1313211 1 15205 Lentisphaeria 3 class 2 Victivallales order 15135 1 278082 3299 0 1 no rank 1674876 11836 0 2094242 11836 0 Victivallales bacterium CCUG 44730 1 species phylum 24 4249 204428 0 24 Chlamydiia class 9 0 1 4249 204429 Parachlamydiales 9 order 1 1522 1963360 8 0 0 7 92713 1 847 family 3 Parachlamydiaceae 386 282132 0 genus 1 Candidatus Protochlamydia naegleriophila 1 species 0 389348 386 0 454 83551 1 genus 0 454 83552 Parachlamydia acanthamoebae 1 species 0 6 92712 1 275 family Simkaniaceae 3 Simkania 2 genus 4 0 269 1 34093 0 83561 265 species Simkania negevensis 1 0 392 92714 2 family genus Waddlia 2 392 1 71666 0 1 391 71667 0 species 1 Waddlia chondrophila 0 2 2718 1 51291 order 14 Chlamydiales 809 1 2716 0 5 family Chlamydiaceae 13 12 no rank 0 2711 1113537 1 2711 810 278 0 Chlamydia 12 genus species Chlamydia pneumoniae 1 83558 344 0 267 1457153 0 Chlamydia gallinacea 1 species species Chlamydia felis 1 0 83556 151 0 153 83554 1 Chlamydia psittaci species 0 125 83557 species 1 Chlamydia caviae 272 813 0 species Chlamydia trachomatis 1 1 Chlamydia abortus species 0 83555 173 229 1457141 0 Chlamydia avium 1 species species 1 Chlamydia muridarum 0 296 83560 1 Chlamydia suis species 294 83559 0 85991 129 0 species Chlamydia pecorum 1 0 2217 134625 5 phylum Kiritimatiellae 5 class 17 0 1 2217 1921781 Kiritimatiellales 4 order 1921782 1 2200 23 0 9 0 2177 1 1921783 3 Kiritimatiellaceae family genus 2 Kiritimatiella 0 112 1 2168 1921784 1 Kiritimatiella glycovorans species 0 2056 1307763 74201 1 57474 16 0 29 Verrucomicrobia phylum class Verrucomicrobiae 6 1 39844 203494 0 22 Verrucomicrobiales 5 order 48461 39822 1 52 0 41 0 39770 1 1647988 Akkermansiaceae 4 family genus Akkermansia 3 239934 1 39729 0 74 36240 239935 0 species 1 Akkermansia muciniphila species Akkermansia glycaniphila 1 0 3415 1679444 class 2 146 134549 0 genus 2 Candidatus Xiphinematobacter 0 2 146 1 134550 no rank 1 0 144 2648876 species 1 Candidatus Xiphinematobacter sp. Idaho Grape 1704307 144 0 2 0 1 648 1955630 6 Methylacidiphilae class 3 0 1 646 717963 Methylacidiphilales 5 order 643 1 717964 1 0 4 Methylacidiphilaceae family genus Methylacidiphilum 3 511745 1 642 0 2 1 Methylacidiphilum infernorum species 0 511746 438 species Methylacidiphilum fumariolicum 1 0 591154 202 417295 4375 0 2 no rank Verrucomicrobia bacterium 1 species 2026799 2203 0 Verrucomicrobia bacterium IMCC26134 1 species 1637999 2172 0 12445 1 414999 111 0 12 Opitutae class 11423 1 415000 243 0 7 Opitutales order family Opitutaceae 6 1 11180 134623 0 233 2 Lacunisphaera genus 57 0 1961799 1 3314 0 1838286 3257 Lacunisphaera limnophila 1 species 1 3151 178440 58 0 Opitutus 2 genus 107709 3093 0 Opitutus terrae 1 species 0 4482 278955 no rank 1 4482 794903 0 Opitutaceae bacterium TAV5 1 species order Puniceicoccales 4 0 8 1 911 415001 family Puniceicoccaceae 3 0 3 1 903 415002 900 1 442430 3 0 2 Coraliomargarita genus species 1 Coraliomargarita akajimensis 897 395922 0