members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4800 10302736 11595 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321Klebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 29 0 name 0 1 0 303 superkingdom 67325 2157 0 232 55217 phylum 1 4 Euryarchaeota 28890 2290931 clade 25779 114 0 0 62 class 14218 1 33 Halobacteria 183963 2235 Halobacteriales order 2665 26 10 1 0 10 family 955 5 1 0 Halobacteriaceae 2236 0 genus 150 2 1 1 332246 Halalkalicoccus 1 species 149 0 Halalkalicoccus jeotgali 413810 1980514 0 1 genus 64 0 species 64 1 1873524 Halodesulfurarchaeum formicicum Halobacterium 2239 12 1 4 668 genus 0 0 1 232 species Halobacterium hubeiense 1407499 2668073 no rank 245 1 0 Halobacterium sp. DL1 751944 1 245 species 0 1 179 species 0 Halobacterium salinarum 2242 0 1 1 2 genus 68 Halanaeroarchaeum 1656823 0 species 67 1 1604004 Halanaeroarchaeum sulfurireducens 0 15 family 1700 1 4 Haloarculaceae 1963268 1073987 Halorientalis 1 1 genus 174 2 0 0 173 no rank 1 2648975 1932360 Halorientalis sp. IM1011 0 173 species 1 63743 0 2 genus 378 0 1 species 196 Natronomonas pharaonis 2257 416273 Natronomonas moolapensis 182 species 1 0 203135 Halomicrobium genus 200 2 1 1 0 57705 Halomicrobium mukohataei 0 199 species 1 Halorhabdus 146825 0 3 250 genus 1 4 1 121 species 0 Halorhabdus tiamatea 430914 1 125 species 0 Halorhabdus utahensis 146826 genus 694 5 7 1 0 2237 Haloarcula 2238 Haloarcula marismortui 0 species 162 1 2624677 1 no rank 174 0 Haloarcula sp. CBA1115 1592728 0 1 174 species 0 1 species 160 Haloarcula taiwanensis 1932004 0 1 species 191 Haloarcula hispanica 51589 1 51 16 order 5732 0 Natrialbales 1644060 Natrialbaceae 1644061 0 15 5681 family 1 22 1 genus 432 0 387342 Halopiger xanaduensis 387343 1 species 432 0 0 923 genus 2 121871 0 1 species 307 Haloterrigena turkmenica 62320 Haloterrigena daqingensis 588898 0 1 616 species Halobiforma 203193 1 1 2 580 genus 0 Halobiforma lacisalsi 229731 0 1 species 579 240 genus 1 0 2256 Natronobacterium gregoryi 44930 1 species 240 0 Natrialba 63742 2 genus 2359 1 1 0 2358 species 1 0 13769 Natrialba magadii 0 227 genus 1 1269201 227 no rank 1 0 2621923 227 species 1 0 1333523 Salinarchaeum sp. Harcht-Bsk1 353799 0 1 genus 156 353800 Halostagnicola larsenii 0 156 species 1 88723 2 453 genus 0 2622230 0 1 no rank 206 206 species 1 0 406552 Natrinema sp. J7-2 0 247 species 1 69525 Natrinema pellirubrum genus 289 2 1 1 0 29287 Natronococcus 0 species 288 1 29288 Natronococcus occultus order 5788 19 77 1 0 1644055 Haloferacales family 4324 9 28 1 0 1644056 Haloferacaceae 0 3 1 2 genus 2884 Haloquadratum 293431 Haloquadratum walsbyi 293091 1 species 2881 0 genus 1219 4 14 1 0 2251 Haloferax 0 1 225 species Haloferax mediterranei 2252 1 443 species 0 Haloferax volcanii 2246 Haloferax gibbonsii 35746 0 1 species 537 1 1 2 193 genus 0 Halogeometricum 60846 0 1 192 species Halogeometricum borinquense 60847 Halorubraceae 1963271 0 1 6 8 1206 family 0 1 7 2 459 genus Salinigranum 1644057 0 452 species 1 755307 Salinigranum rubrum 0 2 1 genus 506 3 56688 Halorubrum 1 197 species 0 Halorubrum lacusprofundi 2247 0 1 species 307 Halorubrum trapanicum 29284 1209988 Halopenitus 1 2 genus 235 2 0 1 species 233 0 Halopenitus persicus 1048396 0 1 no rank 181 2678336 1 181 species 0 halophilic archaeon DL31 756883 224756 Methanomicrobia 0 class 11561 52 1 18 0 order 9647 28 10 1 94695 Methanosarcinales 0 3 family 532 143067 532 genus 3 9 1 0 2222 Methanothrix Methanosaeta harundinacea 301375 0 1 species 233 Methanothrix soehngenii 2223 0 1 290 species Methanosarcinaceae 2206 0 24 family 9105 14 1 265 genus 2 1 6 0 101191 Methanomethylovorans 0 259 species 1 101192 Methanomethylovorans hollandica 1 genus 417 0 196136 39669 Methanosalsum zhilinae species 417 1 0 0 1 178 genus 2220 420950 Methanolobus psychrophilus species 178 1 0 2207 Methanosarcina 6681 genus 13 10 1 0 2208 Methanosarcina barkeri 0 species 1585 1 1 388 species 0 Methanosarcina thermophila 2210 species 508 1 0 2215 Methanosarcina vacuolata Methanosarcina acetivorans 2214 0 1 species 445 Methanosarcina lacustris 170861 1 species 424 0 1 734 species 0 Methanosarcina mazei 2209 species 411 1 0 418008 Methanosarcina horonobensis 0 1 species 528 Methanosarcina siciliae 38027 0 1648 no rank 4 2644672 Methanosarcina sp. MTP4 1434100 0 1 448 species 1 331 species 0 Methanosarcina sp. WWM596 1434103 1 species 514 0 Methanosarcina sp. Kolksee 1434099 Methanosarcina sp. WH1 1434102 1 355 species 0 genus 490 1 0 2321 0 1 species 490 Methanohalobium evestigatum 2322 0 1 1 genus 512 3 2175 Methanohalophilus 0 231 species 1 2177 Methanohalophilus halophilus 280 species 1 0 2176 Methanohalophilus mahii 0 genus 548 2 2225 Methanococcoides methylutens 2226 0 1 species 265 Methanococcoides burtonii 29291 1 species 283 0 570264 Methanocellales 0 order 393 5 1 3 570265 Methanocellaceae 0 1 2 family 390 4 570266 Methanocella genus 388 3 18 1 0 1175444 Methanocella conradii 142 species 1 0 1175445 Methanocella arvoryzae 228 species 1 0 order 1503 18 12 1 0 2191 Methanomicrobiales 2194 Methanomicrobiaceae 680 family 7 5 1 0 Methanolacinia 230355 0 2 185 genus 1 5 54120 Methanolacinia petrolearia 180 species 1 0 45989 Methanoculleus 1 8 genus 490 4 0 0 1 no rank 158 2619537 Methanoculleus sp. MAB1 86622 1 158 species 0 1 species 173 0 Methanoculleus marisnigri 2198 83986 Methanoculleus bourgensis 151 species 1 0 0 2 family 101 88404 Methanocorpusculum 2192 0 4 1 2 genus 101 0 1 species 97 Methanocorpusculum labreanum 83984 0 265 family 2 196137 Methanospirillum 2202 9 1 2 genus 265 0 Methanospirillum hungatei 2203 0 1 species 256 Methanoregulaceae 1198451 0 1 8 6 445 family 0 2 1 2 genus 168 Methanosphaerula 475087 0 species 166 1 475088 Methanosphaerula palustris Methanoregula 395331 3 269 genus 1 4 0 Methanoregula boonei 358766 1 species 141 0 0 1 124 species Methanoregula formicica 882104 0 1074 class 12 1 2 183980 Archaeoglobi Archaeoglobales 2231 0 11 order 1072 1 1 10 1071 family 4 1 0 Archaeoglobaceae 2232 6 1 genus 745 5 0 2233 Archaeoglobus 1 species 155 0 Archaeoglobus fulgidus 2234 Archaeoglobus veneficus 58290 1 133 species 0 0 196 species 1 84156 Archaeoglobus profundus 1316941 Archaeoglobus sulfaticallidus 0 255 species 1 1 3 3 genus 186 0 Geoglobus 190818 0 species 79 1 113653 Geoglobus ahangari 565033 Geoglobus acetivorans 104 species 1 0 genus 136 1 0 54260 0 1 species 136 Ferroglobus placidus 54261 2283794 0 45 clade 20283 0 class 10080 26 1 6 183925 Methanobacteria 0 9 1 10074 order 25 2158 Methanobacteriales 0 678 family 2 2178 2179 Methanothermus genus 678 2 1 1 0 2180 Methanothermus fervidus 677 species 1 0 9 1 22 9387 family 0 Methanobacteriaceae 2159 Methanobacterium 2160 0 8 genus 2750 37 1 species 404 1 0 2162 Methanobacterium formicicum Methanobacterium congolense 118062 0 1 386 species 0 497 species 1 868131 Methanobacterium paludis 2627676 0 2 no rank 587 species 286 1 0 1379702 Methanobacterium sp. MB1 species 301 1 0 1911685 Methanobacterium sp. MZ-A1 0 315 species 1 59277 Methanobacterium subterraneum 0 species 524 1 877455 Methanobacterium lacus 1017 genus 1 0 2316 Methanosphaera stadtmanae 2317 1 1017 species 0 0 5 genus 535 19 1 Methanothermobacter 145260 1 95 species 0 Methanothermobacter thermautotrophicus 145262 Methanothermobacter marburgensis 145263 0 1 species 190 2631116 0 133 no rank 1 0 133 species 1 866790 Methanothermobacter sp. CaT2 0 98 species 1 145261 Methanothermobacter wolfeii 12 1 7 genus 5076 0 Methanobrevibacter 2172 2638681 no rank 1380 2 0 0 species 653 1 1609968 Methanobrevibacter sp. YE315 0 727 species 1 224719 Methanobrevibacter sp. AbM4 Methanobrevibacter olleyae 294671 1 1154 species 0 Methanobrevibacter millerae 230361 0 1 904 species 2173 Methanobrevibacter smithii 0 1038 species 1 83816 Methanobrevibacter ruminantium 0 species 588 1 10203 class 19 1 4 0 183939 Methanococci 0 7 1 18 10199 order Methanococcales 2182 Methanococcaceae 2183 0 10 1 7 family 5572 155862 587 genus 1 0 0 species 587 1 155863 Methanothermococcus okinawensis Methanococcus 2184 0 11 1 5 genus 4975 0 1 species 751 Methanococcus voltae 2188 2187 Methanococcus vannielii species 708 1 0 42879 Methanococcus aeolicus 730 species 1 0 39152 Methanococcus maripaludis species 2775 1 0 Methanocaldococcaceae 196117 0 1 15 10 family 4620 0 genus 3962 7 27 1 196118 Methanocaldococcus 0 1 685 species Methanocaldococcus jannaschii 2190 Methanocaldococcus bathoardescens 1301915 0 1 733 species 0 1 species 678 Methanocaldococcus vulcanius 73913 1 species 678 0 Methanocaldococcus fervens 83171 0 no rank 727 1 2641196 644281 Methanocaldococcus sp. FS406-22 0 727 species 1 0 1 species 434 Methanocaldococcus infernus 67760 196119 Methanotorris genus 643 2 1 1 0 0 642 species 1 2189 Methanotorris igneus 2283796 20 3966 clade 0 1803510 0 474 clade 3 Aciduliprofundum 379546 0 3 474 genus 3 1 species 305 1 0 379547 Aciduliprofundum boonei 2633939 0 1 166 no rank species 166 1 0 673860 Aciduliprofundum sp. MAR08-339 0 class 3492 17 183967 4 1110 order 0 1235850 2517203 1 family 249 0 1291539 genus 249 1 0 1291540 Candidatus Methanomethylophilus alvus 0 species 249 1 1577788 Methanomassiliicoccaceae 0 5 1 861 family 3 1607807 genus 254 1 0 Candidatus Methanoplasma termitum 1577791 0 1 species 254 0 602 genus 1 1080709 0 1 602 species Candidatus Methanomassiliicoccus intestinalis 1406512 Thermoplasmatales 2301 3 1 12 2148 order 0 46630 0 2 346 family 0 genus 346 2 1 3 46631 Picrophilus 82076 Picrophilus torridus 0 species 343 1 46659 0 family 373 2 genus 373 2 0 2302 Thermoplasma acidophilum 2303 1 species 163 0 50339 Thermoplasma volcanium species 210 1 0 1919231 1 no rank 234 0 Thermoplasmatales archaeon BRNA1 1054217 0 1 species 234 1747776 Cuniculiplasmataceae 5 1 family 443 3 0 1 6 genus 438 2 0 1747777 Cuniculiplasma 1 species 432 0 Cuniculiplasma divulgatum 1673428 90142 0 3 family 749 Ferroplasma 74968 3 genus 749 16 1 0 0 species 375 1 97393 Ferroplasma acidarmanus Ferroplasma acidiphilum 74969 1 358 species 0 no rank 234 1 0 1234666 0 1 234 species methanogenic archaeon ISO4-H5 1495144 0 class 4111 40 183968 Thermococcales 2258 0 2 1 40 order 4111 Thermococcaceae 2259 0 2 1 39 4109 family 2900 genus 29 31 1 0 2263 Thermococcus species 44 1 0 1712654 Thermococcus piezophilus 311400 Thermococcus kodakarensis species 57 1 0 2264 Thermococcus celer 62 species 1 0 0 47 species 1 1505907 Thermococcus eurythermalis 1 species 38 0 Thermococcus gorgonarius 71997 species 59 1 0 110164 Thermococcus guaymasensis Thermococcus profundus 49899 0 1 46 species 0 species 47 1 71998 Thermococcus pacificus 0 1 species 255 Thermococcus sibiricus 172049 0 46 species 1 54077 Thermococcus barossii 1 species 51 0 Thermococcus onnurineus 342948 0 1 513 species Thermococcus siculi 72803 Thermococcus barophilus 55802 0 1 325 species 2627626 0 no rank 415 6 Thermococcus sp. 4557 1042877 0 1 49 species 2008440 Thermococcus sp. 5-4 0 39 species 1 species 61 1 0 2016361 Thermococcus sp. EXT12c Thermococcus sp. 2319x1 1674923 1 159 species 0 1 species 38 0 Thermococcus sp. P6 122420 246969 Thermococcus sp. AM4 69 species 1 0 0 species 163 1 2265 Thermococcus litoralis Thermococcus thioreducens 277988 0 1 species 59 163003 Thermococcus cleftensis 0 39 species 1 0 36 species 1 187880 Thermococcus radiotolerans Thermococcus nautili 195522 1 44 species 0 Thermococcus paralvinellae 582419 1 species 276 0 0 species 153 1 54262 Thermococcus chitonophagus 0 species 38 1 53952 Thermococcus peptonophilus Thermococcus gammatolerans 187878 0 1 56 species 6 1 8 genus 1032 0 Pyrococcus 2260 169 species 1 0 2261 Pyrococcus furiosus 1 82 species 0 Pyrococcus yayanosii 1008460 0 species 134 1 53953 Pyrococcus horikoshii 0 species 116 1 1609559 Pyrococcus kukulkanii Pyrococcus abyssi 29292 1 107 species 0 2629106 0 no rank 418 2 0 186 species 1 342949 Pyrococcus sp. NA2 Pyrococcus sp. ST04 1183377 0 1 232 species 83867 0 genus 175 1 0 1 175 species Palaeococcus pacificus 971279 1783276 clade 82 1 0 1801631 1 82 phylum 0 0 genus 82 1 2490204 Candidatus Micrarchaeota archaeon Mia14 1920749 0 1 species 82 0 12026 clade 70 1783275 1 phylum 69 0 51967 498845 0 1 genus 69 Candidatus Korarchaeum cryptofilum 498846 0 1 species 69 6248 phylum 52 0 28889 0 6248 class 52 1 1 183924 Thermoprotei 871006 5 order 706 0 Caldisphaeraceae 255472 3 648 family 1 2 0 1 1 646 genus 2 0 200414 Caldisphaera 0 645 species 1 200415 Caldisphaera lagunensis 871007 0 family 58 2 Acidilobus 105850 2 1 2 58 genus 0 1 species 56 0 Acidilobus saccharovorans 242703 2281 0 10 3486 order 0 10 family 3486 5 1 Sulfolobaceae 118883 0 1 422 genus 12914 Acidianus hospitalis 563177 0 1 422 species 2 genus 246 0 41980 1 160 species 0 Metallosphaera cuprina 1006005 1 86 species 0 Metallosphaera sedula 43687 2284 Sulfolobus 0 1557 genus 4 7 1 2641160 0 no rank 460 1 0 1 species 460 Sulfolobus sp. A20 1891280 0 800 species 1 43080 Sulfolobus islandicus 0 1 290 species Sulfolobus acidocaldarius 2285 1 742 genus 0 69655 Sulfolobus tokodaii 111955 0 1 742 species 0 514 genus 1 2100760 Sulfolobus solfataricus 2287 0 1 species 514 0 19 1112 order 3 1 Desulfurococcales 114380 0 13 887 family 1 12 Desulfurococcaceae 2272 1 1 genus 114 3 0 54258 Ignicoccus 54259 Ignicoccus islandicus 64 species 1 0 species 49 1 0 160233 Ignicoccus hospitalis 1 3 2 45 genus 0 Thermogladius 477695 Thermogladius calderae 1200300 0 1 species 42 0 3 539 genus 3 1 Staphylothermus 2279 219 species 1 0 84599 Staphylothermus hellenicus Staphylothermus marinus 2280 0 1 species 317 1 1 3 genus 130 0 Desulfurococcus 2273 0 species 30 1 2275 Desulfurococcus mucosus Desulfurococcus amylolyticus 94694 0 1 99 species 54253 0 genus 47 1 0 1 species 47 Thermosphaera aggregans 54254 family 222 5 1 7 0 2307 Pyrodictiaceae 1 100 genus 0 54247 0 1 species 100 Hyperthermus butylicus 54248 0 1 68 genus 54251 0 1 species 68 Pyrolobus fumarii 54252 2308 Pyrodictium 0 1 1 47 genus 2 species 46 1 0 1273541 Pyrodictium delaneyi 17 943 order 2 1 0 Thermoproteales 2266 Thermoproteaceae 2267 11 family 647 2 1 0 164450 Vulcanisaeta genus 274 3 1 3 0 Vulcanisaeta distributa 164451 0 1 106 species 0 species 165 1 985052 Vulcanisaeta moutnovskia 0 2 133 genus 1 2 Caldivirga 76886 1 species 131 0 Caldivirga maquilingensis 76887 genus 108 2 1 2 0 2276 Pyrobaculum 0 106 species 1 2277 Pyrobaculum islandicum 2 1 3 genus 130 0 Thermoproteus 2270 1 77 species 0 Thermoproteus tenax 2271 184117 Thermoproteus uzoniensis 0 51 species 1 114378 5 family 294 0 0 1 9 genus 294 5 2268 Thermofilum 0 67 species 1 1550241 Thermofilum uzonense Thermofilum adornatus 1365176 0 1 species 80 Thermofilum pendens 2269 0 1 species 59 0 1 species 79 Thermofilum carboxyditrophus 1483572 Thaumarchaeota 651137 0 1 1 17 5709 phylum 7 1 order 2672 7 0 31932 Nitrosopumilales 10 1 2665 family 6 0 338190 Nitrosopumilaceae 0 4 1 2 1087 genus Candidatus Nitrosomarinus 1993653 Candidatus Nitrosomarinus catalina 1898749 0 1 1083 species 3 genus 1568 7 1 0 Nitrosopumilus 338191 Candidatus Nitrosopumilus adriaticus 1580092 0 1 864 species Candidatus Nitrosopumilus sediminis 1229909 0 1 697 species 5 1315 no rank 0 651142 1593364 Candidatus Nitrosopelagicus 9 1 genus 816 2 0 0 species 807 1 1410606 Candidatus Nitrosopelagicus brevis 0 3 genus 499 1 7 Candidatus Nitrosotenuis 1825023 Candidatus Nitrosotenuis sp. AQ6f 1846278 0 1 213 species Candidatus Nitrosotenuis cloacae 1603555 1 279 species 0 1643678 Nitrososphaeria 0 1 1 class 1721 4 0 917 order 2 1 1 1968909 Candidatus Nitrosocaldales 1968910 0 1 916 family 916 genus 1 0 498374 Candidatus Nitrosocaldus islandicus 2045011 0 1 916 species 1033996 order 803 1 0 1033997 0 1 family 803 497726 0 genus 803 1 0 803 species 1 1034015 Nitrososphaera viennensis 2 Bacteria superkingdom 10223816 4467 49 1 0 1783270 301108 clade 388 0 65842 0 phylum 644 4 0 class 644 4 204430 218872 Fibrobacterales 1 1 order 644 4 0 Fibrobacteraceae 204431 0 2 1 3 643 family 832 Fibrobacter genus 641 2 2 1 0 Fibrobacter succinogenes 833 1 639 species 0 68336 clade 298021 375 0 Bacteroidetes 976 346 phylum 289739 1 50 0 117747 Sphingobacteriia class 19063 24 15 1 0 0 42 1 order 19048 23 200666 Sphingobacteriales 1 80 family 19006 22 0 84566 Sphingobacteriaceae no rank 1932 1 0 84568 1932 species 1 0 1986952 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 Mucilaginibacter 423349 0 4 2351 genus 1 13 1 no rank 566 0 2617802 Mucilaginibacter sp. PAMC 26640 1300914 1 566 species 0 species 848 1 0 1234841 Mucilaginibacter sp. BJC16-A31 Mucilaginibacter gotjawali 1550579 1 species 924 0 Pseudopedobacter 1649482 0 1 13 2 1572 genus Pseudopedobacter saltans 151895 0 1 1559 species 0 1 6 genus 1482 2 929509 Solitalea 995 Solitalea canadensis 0 1476 species 1 6428 genus 6 46 1 0 84567 Pedobacter 0 1446 species 1 188932 Pedobacter cryoconitis Pedobacter steynii 430522 0 1 1053 species 0 1 no rank 1451 2628915 0 1451 species 1 1727164 Pedobacter sp. PACM 27299 984 Pedobacter heparinus 0 species 949 1 1483 species 1 0 363852 Pedobacter ginsengisoli 6 5161 genus 1 42 0 Sphingobacterium 28453 2609468 no rank 4254 4 0 0 1 1024 species Sphingobacterium sp. B29 1933220 0 species 1083 1 2003121 Sphingobacterium sp. G1-14 1 1345 species 0 Sphingobacterium sp. ML3W 1538644 0 1 802 species Sphingobacterium sp. 21 743722 0 species 865 1 1010 Sphingobacterium mizutaii 1 8 order 1408 6 0 1100069 Bacteroidetes Order II. Incertae sedis 563843 Rhodothermaceae 1400 family 5 1 11 0 29548 0 1 genus 392 29549 Rhodothermus marinus 392 species 1 0 1196022 0 1 484 no rank 1779382 Rhodothermaceae bacterium RA 484 species 1 0 Salinibacter 146918 2 genus 513 2 1 0 146919 Salinibacter ruber 0 species 511 1 Saprospiria 1937959 0 1 6 8 1473 class 0 1467 order 7 1 3 1936988 Saprospirales 1937961 Haliscomenobacteraceae family 934 3 3 1 0 5 1 931 genus 2 0 2349 Haliscomenobacter Haliscomenobacter hydrossis 2350 1 926 species 0 3 530 family 1 1 0 Saprospiraceae 89374 0 2 genus 529 1 1 Saprospira 1007 Saprospira grandis 1008 1 528 species 0 Bacteroidia 200643 71 class 21656 1 36 0 order 16924 58 94 1 0 171549 Bacteroidales 0 1 1 3 family 877 Paludibacteraceae 2005523 346096 Paludibacter 4 1 genus 876 2 0 Paludibacter propionicigenes 185300 1 species 872 0 171552 Prevotellaceae 0 1 4 family 3261 11 Prevotella 838 0 10 genus 3257 1 23 0 1 302 species Prevotella jejuni 1177574 Prevotella ruminicola 839 0 1 species 311 Prevotella fusca 589436 1 species 279 0 76123 Prevotella enoeca 0 species 181 1 28129 Prevotella denticola 0 species 148 1 Prevotella dentalis 52227 1 species 199 0 Prevotella melaninogenica 28132 0 1 species 323 942 species 1 0 28131 Prevotella intermedia 2638335 no rank 549 1 0 0 1 species 549 Prevotella sp. oral taxon 299 652716 171550 Rikenellaceae 0 1 1 434 family 4 0 1 3 2 213 genus Mucinivorans 1611681 1433126 Mucinivorans hirudinis species 210 1 0 239759 0 genus 220 1 1 220 species 0 Alistipes finegoldii 214856 0 9 1 4527 family 11 815 Bacteroidaceae 0 44 1 genus 4518 10 816 Bacteroides 412 species 1 0 1796613 Bacteroides caecimuris 1 268 species 0 Bacteroides heparinolyticus 28113 1 513 species 0 Bacteroides cellulosilyticus 246787 0 1 species 653 Bacteroides ovatus 28116 28119 Bacteroides zoogleoformans species 280 1 0 species 589 1 0 818 Bacteroides thetaiotaomicron 290053 Bacteroides helcogenes 342 species 1 0 464 species 1 0 47678 Bacteroides caccae Bacteroides fragilis 817 1 953 species 0 185291 0 1 no rank 414 1400053 Bacteroidales bacterium CF 0 species 414 1 2 1 160 family 3 0 2005519 Barnesiellaceae genus 158 2 1 3 0 397864 Barnesiella 0 species 155 1 397865 Barnesiella viscericola 171551 Porphyromonadaceae 0 5 1 family 643 4 Porphyromonas 836 0 12 1 3 638 genus 28123 Porphyromonas asaccharolytica 0 204 species 1 species 422 1 0 837 Porphyromonas gingivalis Tannerellaceae 2005525 7 1168 family 20 1 0 0 3 genus 454 1 1 Tannerella 195950 0 1 no rank 145 2620507 0 1 species 145 Tannerella sp. oral taxon HOT-286 712710 28112 Tannerella forsythia 0 species 308 1 0 1 9 3 694 genus Parabacteroides 375288 0 1 339 species Parabacteroides distasonis 823 1 346 no rank 0 2649774 2025876 Parabacteroides sp. CT06 species 346 1 0 no rank 3278 5 0 333046 0 2 genus 1773 5 1 Candidatus Azobacteroides 511434 0 1768 species 1 511435 Candidatus Azobacteroides pseudotrichonymphae 909656 0 genus 1505 3 821 Bacteroides vulgatus 493 species 1 0 0 species 443 1 376805 Bacteroides salanitronis 569 species 1 0 357276 Bacteroides dorei 6 1585 family 0 2005520 genus 366 2 10 1 0 294702 Proteiniphilum Proteiniphilum saccharofermentans 1642647 0 1 species 356 0 1 3 2 257 genus Petrimonas 307628 1642646 Petrimonas mucosa 254 species 1 0 Fermentimonas 1784836 0 1 11 2 genus 962 Fermentimonas caenicola 1562970 0 1 species 951 1853231 0 family 483 2 283168 Odoribacter 1 1 483 genus 2 0 species 482 1 0 28118 Odoribacter splanchnicus 1970189 Marinilabiliales 0 1 25 order 4696 12 Salinivirgaceae 1970190 0 5 1 3 974 family Salinivirga 1970191 1 1 2 969 genus 0 0 1 968 species Salinivirga cyanobacteriivorans 1307839 Marinifilaceae 1573805 4 1 2 family 1640 0 0 1 genus 1636 2060722 1717717 Marinifilaceae bacterium SPP2 0 1636 species 1 0 974 family 3 5 1 558415 Marinilabiliaceae 0 1 8 969 genus 2 1193324 Alkalitalea 1 species 961 0 Alkalitalea saponilacus 889453 0 3 family 1083 7 1 Prolixibacteraceae 1471398 0 genus 1076 2 8 1 1471399 Draconibacterium 0 species 1068 1 1168034 Draconibacterium orientale 0 class 211190 158 127 1 117743 Flavobacteriia Flavobacteriales 200644 1 190 157 order 211063 0 1853230 0 2 family 1496 2 genus 1496 6 1 0 Fluviicola 332102 species 1490 1 0 191579 Fluviicola taffensis 1755828 Ichthyobacteriaceae 1142 family 3 1 4 0 0 2 genus 1138 1 31 Ichthyobacterium 1755829 242600 Ichthyobacterium seriolicida species 1107 1 0 0 1 6 family 9663 10 39782 Blattabacteriaceae 34098 Blattabacterium 0 genus 9657 9 76 1 1280 species 1 0 164514 Blattabacterium punctulatus 2647581 0 6 no rank 6925 Blattabacterium sp. (Blatta orientalis) 367806 0 1 species 1033 39768 Blattabacterium sp. (Mastotermes darwiniensis) species 974 1 0 1 species 1210 0 Blattabacterium sp. (Blattella germanica) 624186 Blattabacterium sp. (Periplaneta americana) 367488 1 1097 species 0 0 1 1368 species Blattabacterium sp. (Blaberus giganteus) 1186051 species 1243 1 0 1316444 Blattabacterium sp. (Nauphoeta cinerea) 1 1376 species 0 Blattabacterium cuenoti 1653831 0 1 8 family Cryomorphaceae 246874 4 2640 no rank 0 313602 0 1 2 genus 456 2 1940138 Candidatus Walczuchella 454 species 1 0 1415657 Candidatus Walczuchella monophlebidarum Candidatus Sulcia 336809 2 genus 2184 3 1 0 Candidatus Sulcia muelleri 336810 0 1 2181 species 22 25732 family 0 2762318 13092 no rank 10 0 2782232 1 77 12537 genus 9 0 59732 Chryseobacterium 2593645 0 3 no rank 4596 Chryseobacterium sp. T16E-39 2015076 1 species 1672 0 878220 Chryseobacterium sp. StRB126 0 1502 species 1 0 1 1422 species Chryseobacterium sp. IHB B 17019 1721091 Chryseobacterium piperi 558152 0 1 1563 species species 1091 1 0 1324352 Chryseobacterium gallinarum species 2033 1 0 1685010 Chryseobacterium glaciei Chryseobacterium indologenes 253 1 2624 species 0 Chryseobacterium camelliae 1265445 0 1 species 553 2782228 555 genus 1 0 1 species 555 0 Chryseobacterium taklimakanense 536441 2 genus 2137 1 1 0 Riemerella 34084 1 2136 species 0 Riemerella anatipestifer 34085 308865 Elizabethkingia 1 97 genus 8499 6 0 1 1255 species 0 Elizabethkingia meningoseptica 238 1756150 Elizabethkingia genomosp. 4 0 species 1101 1 1 1765 species 0 Elizabethkingia miricola 172045 1756149 Elizabethkingia genomosp. 3 0 species 1252 1 1 species 3029 0 Elizabethkingia anophelis 1117645 1013 Weeksella 1 1 genus 1084 2 0 1083 species 1 0 1014 Weeksella virosa 2 920 genus 2 1 0 Ornithobacterium 28250 1 918 species 0 Ornithobacterium rhinotracheale 28251 0 1 674 169026 family 112 49546 Flavobacteriaceae 2 genus 1642 2 1 0 Aequorivita 153265 Aequorivita sublithincola 101385 1 1640 species 0 0 73 1 11053 genus 15 1016 Capnocytophaga Capnocytophaga leadbetteri 327575 0 1 species 522 0 1 1106 species Capnocytophaga cynodegmi 28189 Capnocytophaga ochracea 1018 0 1 520 species Capnocytophaga sputigena 1019 0 1 species 1264 28188 Capnocytophaga canimorsus 0 species 1391 1 0 6 4312 no rank 2640652 0 species 557 1 1705617 Capnocytophaga sp. oral taxon 323 Capnocytophaga sp. oral taxon 878 1316596 0 1 species 787 1 640 species 0 Capnocytophaga sp. ChDC OS43 209053 848 species 1 0 1945658 Capnocytophaga sp. H4358 0 1 species 618 Capnocytophaga sp. oral taxon 864 1316593 0 1 species 862 Capnocytophaga sp. H2931 1945657 1 species 363 0 Capnocytophaga haemolytica 45243 1017 Capnocytophaga gingivalis 0 573 species 1 929 species 1 0 1848904 Capnocytophaga stomatis genus 822 1 0 112040 63186 Zobellia galactanivorans species 822 1 0 Maribacter 252356 0 53 1 5 7748 genus 2615042 0 6604 no rank 3 313603 Maribacter sp. HTCC2170 species 1815 1 0 species 2471 1 0 1644130 Maribacter sp. 1_2014MBL_MicDiv Maribacter sp. T28 1836467 1 2318 species 0 0 species 1091 1 1178778 Maribacter cobaltidurans 61432 0 2 no rank 3393 2841 species 1 0 1150389 Flavobacteriaceae bacterium UJ101 Flavobacteriaceae bacterium 3519-10 531844 0 1 species 552 363408 Nonlabens 1 186 genus 7138 5 0 319236 Nonlabens sediminis 1878 species 1 0 2615035 3395 no rank 2 0 1 species 1818 0 Nonlabens sp. MIC269 1476901 0 1 1577 species Nonlabens sp. MB-3u-79 2058134 1679 species 1 0 328515 Nonlabens dokdonensis genus 2351 2 1 1 0 1204360 Siansivirga 0 1 2350 species Siansivirga zeaxanthinifaciens 762954 Croceibacter 216431 0 2 2360 genus 6 1 313588 Croceibacter atlanticus 0 2354 species 1 Formosa 225842 3 3931 genus 1 2 0 0 3929 no rank 2 2644710 1336794 Formosa sp. Hel1_33_131 0 species 1690 1 1 species 2239 0 Formosa sp. Hel3_A1_48 1336795 3 1 2 1257 genus 0 Arenibacter 178469 616991 Arenibacter algicola 0 species 1254 1 326319 Dokdonia 0 41 1 genus 4958 4 0 1 species 1684 Dokdonia donghaensis 326320 2615033 no rank 3233 2 0 Dokdonia sp. MED134 313590 1 1538 species 0 983548 Dokdonia sp. 4H-3-7-5 1695 species 1 0 Lacinutrix 291183 0 72 1 4 9758 genus 0 6603 no rank 2 2647285 0 1 species 3348 Lacinutrix sp. Bg11-31 2057808 983544 Lacinutrix sp. 5H-3-7-4 0 3255 species 1 1 3083 species 0 Lacinutrix venerupis 1486034 104267 Tenacibaculum 0 12785 genus 5 26 1 Tenacibaculum maritimum 107401 0 1 2614 species 669041 Tenacibaculum dicentrarchi 2642 species 1 0 1 species 3571 0 Tenacibaculum todarodis 1850252 584609 Tenacibaculum jejuense 0 3932 species 1 111500 Muricauda 0 1669 genus 3 6 1 111501 Muricauda ruestringensis 0 1097 species 1 516051 Muricauda lutaonensis 0 species 566 1 286104 Winogradskyella 0 13 1 genus 5554 3 2 5541 no rank 0 2615021 species 2223 1 0 1936080 Winogradskyella sp. J14-2 754409 Winogradskyella sp. PG-2 3318 species 1 0 292691 Gramella 8 1 4795 genus 5 0 2126553 Gramella sp. SH35 species 1139 1 0 Gramella flava 1486245 1 species 794 0 411153 Gramella forsetii species 1582 1 0 0 1 1272 species Gramella sp. LPB0144 1913577 Myroides 76831 0 1 136 5 5427 genus species 1357 1 0 480520 Myroides profundi 2642485 2 2588 no rank 0 Myroides sp. ZB35 1458492 0 1 1295 species Myroides sp. A21 1583100 0 1 species 1293 0 1346 species 1 76832 Myroides odoratimimus 1 10 2 genus 3943 0 Lutibacter 358023 0 1 species 3933 Lutibacter profundi 1622118 0 1 1 2 genus 1825 Salegentibacter 143222 2633436 1 no rank 1824 0 1729720 Salegentibacter sp. T436 0 1824 species 1 0 2667 genus 2 1 1 336276 Olleya 0 2666 no rank 1 2615019 0 1 2666 species Olleya sp. Bg11-27 2058135 Psychroflexus 83612 0 2 2132 genus 1 2 species 2130 1 0 57029 Psychroflexus torquis 0 genus 4229 1 2700084 Lutibacter sp. LPB0138 1850246 0 1 4229 species 389486 0 974 genus 1 1 974 no rank 0 2648869 Sediminicola sp. YIK13 1453352 1 974 species 0 1 1 2 genus 2088 0 Zunongwangia 417127 398743 Zunongwangia profunda species 2087 1 0 393005 0 1919 genus 1 2069432 Tamlana sp. UJ94 0 1919 species 1 1 genus 2432 0 1209327 species 2432 1 0 1803846 Flavivirga eckloniae 0 1 2 3237 genus 2 261827 Algibacter 1 species 3235 0 Algibacter alginicilyticus 1736674 2 274 genus 3 1 0 Robiginitalea 252306 species 271 1 0 252307 Robiginitalea biformata 4 1 genus 3156 2 0 1649495 Seonamhaeicola 2622645 no rank 3152 1 0 0 species 3152 1 1936081 Seonamhaeicola sp. S2-3 0 genus 9065 4 1 51 104264 Cellulophaga Cellulophaga lytica 979 1 species 3216 0 Cellulophaga baltica 76594 0 1 2958 species 0 1 2840 species Cellulophaga algicola 59600 0 2755 genus 2 1 3 1518147 Wenyingzhuangia Wenyingzhuangia fucanilytica 1790137 1 2752 species 0 6 1 2 genus 870 0 Aureitalea 1176327 2636237 0 1 864 no rank 0 864 species 1 2094025 Aureitalea sp. RR4-38 Flavobacterium 237 48 1 9 20650 genus 0 Flavobacterium gilvum 1492737 0 1 species 1840 55197 Flavobacterium branchiophilum 1871 species 1 0 986 Flavobacterium johnsoniae species 4904 1 0 Flavobacterium crassostreae 1763534 0 1 species 1220 1306519 Flavobacterium commune 0 1813 species 1 0 1 species 2086 Flavobacterium psychrophilum 96345 312277 Flavobacterium indicum species 2862 1 0 0 1 4006 species Flavobacterium columnare 996 1 117 6 genus 19495 0 Polaribacter 52959 0 4548 species 1 996801 Polaribacter reichenbachii 0 species 4305 1 1774273 Polaribacter vadi 196858 0 3 10525 no rank Polaribacter sp. MED152 313598 0 1 species 3741 species 3719 1 0 1529069 Polaribacter sp. BM10 0 species 3065 1 2058137 Polaribacter sp. ALD11 1333713 0 1166 family 2 Owenweeksia 267986 26 1 2 genus 1166 0 1140 species 1 0 253245 Owenweeksia hongkongensis class 29284 61 43 1 0 768503 Cytophagia Cytophagales 768507 0 60 29241 order 108 1 12 1 family 5706 16 0 89373 Cytophagaceae 861914 0 332 genus 1 1 no rank 332 0 2620963 1 species 332 0 Fibrella sp. ES10-3-2-2 1834519 Runella 105 2 genus 745 1 1 0 0 1 species 744 Runella slithyformis 106 0 genus 837 2 1 15 319458 Leadbetterella Leadbetterella byssophila 316068 0 1 822 species 107 Spirosoma 0 22 1 2086 genus 6 1211326 Spirosoma aerolatum species 446 1 0 Spirosoma radiotolerans 1379870 1 490 species 0 278 species 1 0 564064 Spirosoma rigui Spirosoma montaniterrae 1178516 0 1 316 species Spirosoma sp. HA7 2057025 0 1 species 534 2 genus 1208 27 1 0 Cytophaga 978 0 species 1181 1 985 Cytophaga hutchinsonii Dyadobacter 120831 2 486 genus 1 3 0 1 483 species 0 Dyadobacter fermentans 94254 1853232 Hymenobacteraceae 0 family 4775 16 1 12 Pontibacter 323449 0 3 795 genus 7 1 0 1 463 species Pontibacter korlensis 400092 388950 Pontibacter akesuensis 0 species 325 1 29 1 8 genus 2521 0 Hymenobacter 89966 1446467 Hymenobacter swuensis 332 species 1 0 Hymenobacter sedentarius 1411621 1 384 species 0 2615202 0 1776 no rank 5 Hymenobacter sp. PAMC 26628 1484118 1 506 species 0 Hymenobacter sp. DG25B 1385664 0 1 218 species 1 species 198 0 Hymenobacter sp. DG25A 1385663 1484116 Hymenobacter sp. PAMC 26554 0 species 475 1 379 species 1 0 1356852 Hymenobacter sp. APR13 20 1 1447 genus 4 0 1379908 Rufibacter 2639626 2 836 no rank 0 1379909 Rufibacter sp. DG15C species 420 1 0 0 species 416 1 1379910 Rufibacter sp. DG31D 1 591 species 0 Rufibacter tibetensis 512763 family 1949 2 0 2762301 869806 Marivirga 1949 genus 2 19 1 0 1006 Marivirga tractuosa 1930 species 1 0 0 family 6408 10 18 1 563798 Cyclobacteriaceae 390846 Echinicola 0 7 1 genus 599 2 0 1 species 592 Echinicola vietnamensis 390884 Belliella 232244 9 1 2 1707 genus 0 232259 Belliella baltica 0 species 1698 1 246875 Algoriphagus 6 1 genus 1053 2 0 1727163 Algoriphagus sp. M8-2 0 1047 species 1 Cyclobacterium 68288 0 15 1 3 3031 genus 0 1 1467 species Cyclobacterium marinum 104 Cyclobacterium amurskyense 320787 1 1549 species 0 0 1106 family 3 4 1 1853234 Persicobacteraceae 6 1 1102 genus 2 0 59740 Persicobacter 1096 no rank 1 0 2664020 0 species 1096 1 1085624 Persicobacter sp. JZB09 1 7 family 1038 5 0 1501348 Amoebophilaceae 0 1 3 genus 388 2 273135 Candidatus Cardinium 385 no rank 1 0 2641185 Cardinium endosymbiont of Encarsia pergandiella 249402 1 species 385 0 0 2 genus 643 1 7 Candidatus Amoebophilus 281119 species 636 1 0 281120 Candidatus Amoebophilus asiaticus Bernardetiaceae 1937968 3 family 3239 8 1 0 Bernardetia 1937972 2 genus 3231 1 10 0 1 3221 species 0 Bernardetia litoralis 999 0 family 4912 4 1 8 200667 Flammeovirgaceae 340671 no rank 2369 1 0 1 2369 species 0 Flammeovirgaceae bacterium 311 1257021 0 2535 genus 2 2 1 59739 Flammeovirga 2637820 0 no rank 2533 1 0 1 2533 species Flammeovirga sp. MY04 1191459 1853228 Chitinophagia 0 1 2 5615 class 17 1853229 Chitinophagales 0 order 5613 16 1 8 Chitinophagaceae 563835 15 5605 family 1 61 0 Flavisolibacter 398041 0 2 genus 953 1 1 1492898 Flavisolibacter tropicus 0 952 species 1 1 12 3 genus 935 0 Niabella 379899 1176587 Niabella ginsenosidivorans species 468 1 0 Niabella soli 446683 0 1 species 455 0 1 6 genus 866 2 354354 Niastella 1 species 860 0 Niastella koreensis 354356 Chitinophaga 79328 1 4 3 1248 genus 0 0 1 598 species Chitinophagaceae bacterium 13 2029983 79329 Chitinophaga pinensis 0 646 species 1 Arachidicoccus 1769012 2 genus 925 4 1 0 2636138 0 no rank 921 1 0 species 921 1 1850526 Arachidicoccus sp. BS20 Filimonas 649460 1 11 2 617 genus 0 477680 Filimonas lacunae 0 606 species 1 1134404 8 phylum 3477 0 8 class 3477 9 1 0 Ignavibacteria 795747 14 1 7 3468 order 0 Ignavibacteriales 795748 0 1 1 3 591 family Melioribacteraceae 1334117 1134403 Melioribacter genus 590 2 1 4 0 1134405 Melioribacter roseus 0 species 586 1 Ignavibacteriaceae 795749 3 2863 family 4 1 0 795750 Ignavibacterium 0 2859 genus 2 1 8 591197 Ignavibacterium album 0 2851 species 1 0 21 4805 phylum 1090 0 21 class 4805 20 1 Chlorobia 191410 191411 Chlorobiales 27 1 order 4785 20 0 0 19 family 4758 20 1 Chlorobiaceae 191412 256319 Chlorobaculum 42 1 genus 782 4 0 0 1 193 species Chlorobaculum tepidum 1097 274539 Chlorobaculum parvum 0 268 species 1 274537 Chlorobaculum limnaeum 0 species 279 1 1 520 genus 0 100715 0 1 520 species Chloroherpeton thalassium 100716 1 52 971 genus 5 0 1101 Prosthecochloris 1102 Prosthecochloris aestuarii species 203 1 0 no rank 716 3 0 2632826 0 species 224 1 281093 Prosthecochloris sp. GSB1 1 species 223 0 Prosthecochloris sp. CIB 2401 1868325 1974213 Prosthecochloris sp. HL-130-GSB 269 species 1 0 274493 8 no rank 2465 0 1091 Chlorobium 0 genus 1878 5 1 47 Chlorobium chlorochromatii 337090 1 503 species 0 1094 Chlorobium phaeovibrioides 0 194 species 1 1096 Chlorobium phaeobacteroides species 842 1 0 1092 Chlorobium limicola species 292 1 0 Pelodictyon 1099 1 2 3 genus 587 0 Pelodictyon luteolum 1100 1 species 176 0 Pelodictyon phaeoclathratiforme 34090 1 409 species 0 142182 0 8 1733 phylum Gemmatimonadetes 219685 0 8 1733 class 6 1 Gemmatimonadales 219686 0 10 1 7 order 1727 Gemmatimonadaceae 219687 10 1 6 1717 family 0 967 genus 2 1 1 0 1706036 Gemmatirosa 1 966 species 0 Gemmatirosa kalamazoonesis 861299 173479 Gemmatimonas 740 genus 3 6 1 0 Gemmatimonas phototrophica 1379270 0 1 358 species 1 species 376 0 Gemmatimonas aurantiaca 173480 456828 0 1 710 phylum 456826 1 genus 710 0 0 710 species 1 456827 Candidatus Cloacimonas acidaminovorans 0 5 1 2581 phylum 11 74152 Elusimicrobia 6 class 1381 3 1 0 Endomicrobia 447830 Endomicrobiales 1783344 1 6 5 order 1378 0 1 1 4 family 1372 0 Endomicrobiaceae 1783343 1408194 Endomicrobium 1 1 1371 genus 3 0 1408204 Candidatus Endomicrobium trichonymphae 0 671 species 1 0 species 699 1 1408281 Endomicrobium proavitum 0 no rank 754 1 99260 species 754 1 0 167965 uncultured Termite group 1 bacterium 0 3 441 class 641853 2 1 order 441 3 0 641854 Elusimicrobiales 641876 0 2 439 family genus 439 2 1 1 0 423604 Elusimicrobium 438 species 1 0 423605 Elusimicrobium minutum phylum 36469 57 0 203691 0 57 class 36469 61 1 Spirochaetia 203692 Spirochaetales 136 78 1 40 21778 order 0 1 39 17 15072 family 0 Borreliaceae 1643685 Borrelia 138 0 1 216 8 8317 genus species 1837 1 0 40834 Borrelia duttonii Borrelia miyamotoi 47466 1 1829 species 0 0 1 species 840 Borrelia hermsii 140 141 Borrelia parkeri species 808 1 0 Borrelia turicatae 142 1 species 879 0 44449 Borrelia recurrentis 0 1191 species 1 0 1 species 717 Borrelia anserina 143 Borreliella 64895 8 6716 genus 1 383 0 Borrelia mayonii 1674146 0 1 858 species 139 Borreliella burgdorferi 0 860 species 1 0 1 847 species Borreliella bissettii 64897 0 species 693 1 62088 Borreliella valaisiana 1 1463 species 0 Borreliella garinii 29519 Borreliella bavariensis 664662 1 species 717 0 1 895 species 0 Borreliella afzelii 29518 6628 family 22 25 1 0 137 Spirochaetaceae 1616789 0 783 genus 1 1 species 783 0 Salinispira pacifica 1307761 genus 4154 12 18 1 0 157 Treponema 0 1 639 species Treponema pedis 409322 53435 Treponema paraluiscuniculi 0 190 species 1 215591 Treponema caldarium species 452 1 0 Treponema brennaborense 81028 1 species 159 0 0 species 209 1 150829 Treponema azotonutricium 1 species 602 0 Treponema succinifaciens 167 Treponema primitia 88058 1 species 388 0 160 Treponema pallidum 184 species 1 0 601 species 1 0 221027 Treponema putidum 0 no rank 208 1 2638727 0 1 208 species Treponema sp. OMZ 838 1539298 0 1 504 species Treponema denticola 158 Sediminispirochaeta 1911556 1 1 2 334 genus 0 1 333 species 0 Sediminispirochaeta smaragdinae 55206 3 genus 646 0 399320 Sphaerochaeta coccoides 273376 1 species 213 0 Sphaerochaeta globosa 1131703 1 species 183 0 Sphaerochaeta pleomorpha 1131707 1 species 250 0 0 1 5 686 genus 3 146 Spirochaeta 154 Spirochaeta thermophila 0 species 273 1 46355 Spirochaeta africana species 408 1 0 Brachyspirales 1643686 0 1 26 7 order 9035 family 9009 6 11 1 0 143786 Brachyspiraceae 29521 Brachyspira genus 8998 5 43 1 0 1 species 1863 0 Brachyspira murdochii 84378 159 Brachyspira hyodysenteriae 0 2294 species 1 species 2181 1 0 84377 Brachyspira intermedia Brachyspira pilosicoli 52584 0 1 2617 species 1643688 5595 order 9 0 9 family 5595 41 1 0 Leptospiraceae 170 242 genus 2 1 1 0 338321 Turneriella 29510 Turneriella parva 0 species 241 1 171 Leptospira 0 11 1 5312 genus 6 Leptospira borgpetersenii 174 0 1 species 877 1 species 2220 0 Leptospira interrogans 173 0 1 species 599 Leptospira alstonii 28452 Leptospira santarosai 28183 0 1 species 540 1065 species 1 0 172 Leptospira biflexa 40117 0 14 3885 phylum 0 1 42 class 3885 14 203693 Nitrospira Nitrospirales 189778 0 13 order 3843 1 24 189779 Nitrospiraceae 3819 family 12 1 12 0 Leptospirillum 179 0 14 1 4 774 genus 655606 1 316 species group 0 180 Leptospirillum ferrooxidans species 316 1 0 0 1 234 species group 261385 1660083 Leptospirillum sp. Group II 'CF-1' 234 species 1 0 0 210 species group 1 261386 178606 Leptospirillum ferriphilum 0 210 species 1 Nitrospira 1234 1 12 5 833 genus 0 1325564 Nitrospira japonica 163 species 1 0 Nitrospira defluvii 330214 0 1 species 231 Candidatus Nitrospira inopinata 1715989 1 165 species 0 1 species 262 0 Nitrospira moscoviensis 42253 0 2 2200 genus 1 1 Thermodesulfovibrio 28261 Thermodesulfovibrio yellowstonii 28262 0 1 2199 species 200930 10 phylum 5931 0 0 10 class 5931 21 1 Deferribacteres 68337 0 9 5910 order 1 16 Deferribacterales 191393 0 8 5894 family 23 1 Deferribacteraceae 191394 Deferribacter 53572 2 genus 2993 5 1 0 0 2988 species 1 197162 Deferribacter desulfuricans 1 13 genus 700 2 0 117999 Denitrovibrio 0 1 687 species Denitrovibrio acetiphilus 118000 Calditerrivibrio 545865 0 2 1156 genus 4 1 Calditerrivibrio nitroreducens 477976 0 1 1152 species 1 1022 genus 0 2351 0 1022 species 1 2352 Flexistipes sinusarabici 200783 0 28 phylum 11440 0 28 class 11440 1 25 Aquificae 187857 0 21 order 9573 1 11 Aquificales 32069 0 1 9 6 family 4411 Hydrogenothermaceae 224027 212790 Sulfurihydrogenibium 0 3477 genus 3 38 1 2619248 1 no rank 1841 0 Sulfurihydrogenibium sp. YO3AOP1 436114 0 1 1841 species Sulfurihydrogenibium azorense 309806 0 1 species 1598 2 1 925 genus 2 0 182899 Persephonella 0 1 species 923 Persephonella marina 309805 0 12 family 4658 1 14 Aquificaceae 64898 1 genus 232 0 939 940 Hydrogenobacter thermophilus 232 species 1 0 Hydrogenobaculum 168657 6 genus 3816 1 117 0 2622382 no rank 3699 5 0 Hydrogenobaculum sp. 3684 547143 1 species 745 0 547146 Hydrogenobaculum sp. SN 0 species 744 1 Hydrogenobaculum sp. Y04AAS1 380749 1 species 720 0 Hydrogenobaculum sp. SHO 547145 0 1 745 species 745 species 1 0 547144 Hydrogenobaculum sp. HO 75905 0 2 384 genus 136094 Thermocrinis albus 189 species 1 0 0 1 195 species Thermocrinis ruber 75906 Aquifex 2713 1 1 2 212 genus 0 0 211 species 1 63363 Aquifex aeolicus 90150 2 no rank 493 0 Thermosulfidibacter 412592 2 493 genus 1 5 0 species 488 1 0 412593 Thermosulfidibacter takaii Desulfurobacteriales 1485951 0 6 1842 order 1 6 0 1836 family 5 7 1 558314 Desulfurobacteriaceae 0 2 1 171 genus 2 171868 Thermovibrio Thermovibrio ammonificans 228745 0 1 species 169 Desulfurobacterium 64159 2 1658 genus 4 1 0 0 species 1654 1 64160 Desulfurobacterium thermolithotrophum clade 21683 96 0 1783257 204428 0 26 6467 phylum Chlamydiia 204429 26 class 6467 1 22 0 Chlamydiales 51291 0 8 1 14 order 4480 0 13 family 4472 1 10 Chlamydiaceae 809 12 4462 no rank 0 1113537 810 Chlamydia 0 4462 genus 12 52 1 0 488 species 1 83558 Chlamydia pneumoniae 0 438 species 1 1457141 Chlamydia avium 367 species 1 0 83555 Chlamydia abortus 83556 Chlamydia felis 432 species 1 0 Chlamydia psittaci 83554 1 535 species 0 Chlamydia suis 83559 1 species 207 0 Chlamydia muridarum 83560 0 1 species 271 0 1 species 453 Chlamydia gallinacea 1457153 813 Chlamydia trachomatis 326 species 1 0 0 458 species 1 85991 Chlamydia pecorum Chlamydia caviae 83557 1 435 species 0 Parachlamydiales 1963360 11 1965 order 6 1 0 family 336 2 0 92714 71666 Waddlia 0 genus 336 2 1 1 0 1 335 species Waddlia chondrophila 71667 Simkaniaceae 92712 3 family 407 1 1 0 Simkania 34093 0 3 1 2 406 genus 0 1 403 species Simkania negevensis 83561 0 5 family 1216 4 1 Parachlamydiaceae 92713 0 4 1 genus 746 2 83551 Parachlamydia 0 1 species 742 Parachlamydia acanthamoebae 83552 1 3 genus 466 2 0 282132 Candidatus Protochlamydia 0 species 463 1 389348 Candidatus Protochlamydia naegleriophila phylum 423 3 0 256845 3 class 423 1 12 0 Lentisphaeria 1313211 278082 Victivallales 0 11 1 order 411 2 1674876 400 no rank 1 0 1 400 species 0 Victivallales bacterium CCUG 44730 2094242 134625 5 phylum 411 0 1 2 411 class 5 0 1921781 Kiritimatiellae 1921782 Kiritimatiellales 0 1 6 order 409 4 3 family 403 1 3 0 Kiritimatiellaceae 1921783 2 genus 400 9 1 0 Kiritimatiella 1921784 species 391 1 0 1307763 Kiritimatiella glycovorans 9 1 phylum 5914 28 0 74201 Verrucomicrobia Methylacidiphilae 1955630 6 1174 class 1 2 0 717963 Methylacidiphilales 1 2 order 1172 5 0 717964 Methylacidiphilaceae 0 family 1170 4 1 1 Methylacidiphilum 511745 0 5 1 3 1169 genus species 729 1 0 591154 Methylacidiphilum fumariolicum Methylacidiphilum infernorum 511746 0 1 435 species 134549 Spartobacteria 0 1 1 class 241 3 Candidatus Xiphinematobacter 134550 7 1 2 genus 240 0 2648876 0 1 233 no rank 233 species 1 0 1704307 Candidatus Xiphinematobacter sp. Idaho Grape 2 no rank 943 0 417295 2026799 Verrucomicrobia bacterium 0 species 539 1 1637999 Verrucomicrobia bacterium IMCC26134 0 species 404 1 203494 0 5 738 class 48461 Verrucomicrobiales 0 738 order 5 8 1 0 6 1 4 family 730 Akkermansiaceae 1647988 0 17 1 3 724 genus Akkermansia 239934 Akkermansia glycaniphila 1679444 1 species 380 0 1 327 species 0 Akkermansia muciniphila 239935 414999 Opitutae 0 2809 class 11 1 10 Puniceicoccales 415001 4 1065 order 1 8 0 415002 Puniceicoccaceae 0 1057 family 3 3 1 1054 genus 2 1 1 0 442430 Coraliomargarita 0 1053 species 1 395922 Coraliomargarita akajimensis Opitutales 415000 0 6 1734 order 21 1 1 12 family 1713 5 0 134623 Opitutaceae 505 genus 1 0 1961799 1838286 Lacunisphaera limnophila 0 505 species 1 517 genus 2 2 1 0 178440 Opitutus 0 species 515 1 107709 Opitutus terrae 278955 1 679 no rank 0 Opitutaceae bacterium TAV5 794903 1 679 species 0 phylum 8468 34 0 203682 666505 Phycisphaerae 0 1248 class 7 7 1 2483366 0 523 order 2 0 523 family 2 2483367 2 genus 523 0 2483368 1 246 species 0 Phycisphaerae bacterium ST-PulAB-D4 1941349 0 1 277 species Phycisphaerae bacterium L21-RPul-D3 1940790 0 4 718 order 10 1 Phycisphaerales 666506 3 family 708 1 1 0 Phycisphaeraceae 666507 3 1 707 genus 2 0 666508 Phycisphaera Phycisphaera mikurensis 547188 0 1 species 704 0 25 class 5245 1 23 Planctomycetia 203683 568 order 3 0 2691355 Gemmataceae 1914233 0 1 1 3 family 568 Gemmata 113 2 567 genus 11 1 0 0 no rank 556 1 2622970 0 species 556 1 1630693 Gemmata sp. SH-PL17 5 1122 order 0 2691354 2691357 0 891 family 4 1 1 2 434 genus 0 Pirellula 123 433 species 1 0 125 Pirellula staleyi 265488 Rhodopirellula 3 1 457 genus 2 0 species 454 1 0 265606 Rhodopirellula baltica 0 family 231 1 2691358 1 231 genus 0 1676125 1 231 species 0 Thermogutta terrifontis 1331910 1 55 10 2067 order 0 Planctomycetales 112 1 33 9 family 2012 0 Planctomycetaceae 126 3 genus 932 5 1 0 Planctomyces 118 2648843 0 no rank 927 2 0 1 495 species Planctomyces sp. SH-PL62 1636152 1 432 species 0 Planctomyces sp. SH-PL14 1632864 1936111 Fuerstia 1 1 398 genus 2 0 Fuerstia marisgermanicae 1891926 1 species 397 0 0 1 genus 266 1649480 120 Planctopirus limnophila 266 species 1 0 0 2 383 genus 1 8 Rubinisphaera 1649490 1 375 species 0 Rubinisphaera brasiliensis 119 6 1465 order 0 2691356 0 1 12 6 1465 family Isosphaeraceae 1763524 0 genus 505 1 1763521 1387353 Paludisphaera borealis 0 species 505 1 Isosphaera 127 7 1 2 genus 451 0 Isosphaera pallida 128 1 444 species 0 0 1 5 2 genus 497 Singulisphaera 466152 0 492 species 1 466153 Singulisphaera acidiphila 2517206 2 1975 class 0 3 1 1975 order 2 0 1127829 Candidatus Brocadiales 0 family 1972 1 1127830 genus 1972 1 0 380738 Candidatus Kuenenia stuttgartiensis 174633 1 1972 species 0 0 1327 no rank 3 2323 0 3 clade 1327 1783234 95818 130 phylum 1 0 1895827 0 no rank 130 1 0 1 species 130 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 0 2 1197 clade 95901 2 1197 class 0 2497643 2497644 1197 order 2 0 2497645 2 family 1197 0 Candidatus Babela 1551504 5 1 2 1197 genus 0 673862 Candidatus Babela massiliensis 1192 species 1 0 1224 Proteobacteria 0 phylum 1613225 2053 349 1 0 5 685 class 580370 580371 Mariprofundales 0 order 685 5 13 1 0 3 1 family 672 4 580372 Mariprofundaceae 0 669 genus 3 16 1 377315 Mariprofundus 1921087 Mariprofundus ferrinatatus 0 324 species 1 1921086 Mariprofundus aestuarium 329 species 1 0 Gammaproteobacteria 1236 1 1160 907 class 635470 0 1 8 order 21326 33 0 135625 Pasteurellales Pasteurellaceae 712 131 1 32 21318 family 0 0 1 7 genus 463 2 697331 Basfia 456 species 1 0 157673 [Mannheimia] succiniciproducens Gallibacterium 155493 0 1 6 2 genus 786 0 species 780 1 750 Gallibacterium anatis 0 15 1 5 genus 2147 Actinobacillus 713 species 319 1 0 67854 Actinobacillus succinogenes Actinobacillus suis 716 1 species 570 0 Actinobacillus equuli 718 0 1 541 species 0 702 species 1 715 Actinobacillus pleuropneumoniae Mannheimia 75984 0 19 1 4 2377 genus 2645054 0 628 no rank 1 Mannheimia sp. USDA-ARS-USMARC-1261 1432056 1 628 species 0 0 1 species 956 Mannheimia varigena 85404 Mannheimia haemolytica 75985 1 774 species 0 genus 1357 2 1 2 0 214906 Histophilus Histophilus somni 731 0 1 species 1355 Haemophilus 724 0 6 genus 6738 53 1 2609962 0 1 no rank 683 712310 Haemophilus sp. oral taxon 036 species 683 1 0 727 Haemophilus influenzae 0 species 3381 1 0 1 species 1321 [Haemophilus] ducreyi 730 0 779 species 1 729 Haemophilus parainfluenzae 0 1 521 species Haemophilus pittmaniae 249188 2094023 Glaesserella genus 1352 2 1 7 0 1 species 1345 0 Glaesserella parasuis 738 3 3681 genus 19 1 0 Pasteurella 745 Pasteurella dagmatis 754 1 species 983 0 0 1 2679 species Pasteurella multocida 747 1 3 genus 972 2 0 476528 Bibersteinia 47735 Bibersteinia trehalosi species 969 1 0 6 1 genus 1314 3 0 416916 Aggregatibacter 1 671 species 0 Aggregatibacter actinomycetemcomitans 714 Aggregatibacter aphrophilus 732 0 1 species 637 4 490 order 1 10 0 Immundisolibacterales 1934945 0 3 family 480 5 1 Immundisolibacteraceae 1934946 Immundisolibacter 1934947 2 475 genus 11 1 0 0 464 species 1 1810504 Immundisolibacter cernigliae 36 order 46435 1 35 0 Thiotrichales 72273 0 9721 family 15 66 1 135616 Piscirickettsiaceae 0 88 1 genus 4494 4 34067 Cycloclasticus 0 1 1597 species Cycloclasticus zancles 1329899 0 2809 no rank 2 2621467 385025 Cycloclasticus sp. P1 1496 species 1 0 0 1 species 1313 Cycloclasticus sp. PY97N 728003 14 1 1542 genus 3 0 40222 Methylophaga 1 species 885 0 Methylophaga nitratireducenticrescens 754476 0 1 species 643 Methylophaga frappieri 754477 Thiomicrospira 933 0 12 1 3 1207 genus Thiomicrospira cyclica 147268 0 1 species 567 0 628 species 1 92245 Thiomicrospira aerophila Hydrogenovibrio 28884 0 2 714 genus 2 1 39765 Hydrogenovibrio crunogenus 0 species 712 1 1237 Piscirickettsia 0 genus 1698 2 4 1 0 1 1694 species Piscirickettsia salmonis 1238 0 3081 family 5 38 1 135617 Thiotrichaceae 2 1685 genus 6 1 0 Beggiatoa 1021 0 species 1679 1 288004 Beggiatoa leptomitoformis 40751 Thioploca 0 10 1 1358 genus 2 1 1348 species 0 Thioploca ingrica 40754 1 42 15 33598 family 0 Francisellaceae 34064 2069 genus 2 1 5 0 1869285 Allofrancisella 594679 Allofrancisella guangzhouensis species 2064 1 0 Francisella 262 12 31487 genus 308 1 0 657445 Francisella noatunensis 3156 species 1 0 species 3331 1 0 549298 Francisella halioticida 0 1 species 2430 Francisella sp. TX077310 573570 Francisella philomiragia 28110 1 4721 species 0 573569 Francisella sp. TX077308 0 1805 species 1 1 species 1945 0 Francisella hispaniensis 622488 2610885 2 no rank 3926 0 Francisella sp. MA067296 475375 0 1 1752 species Francisella sp. FSC1006 1547445 1 2174 species 0 0 species 5604 1 263 Francisella tularensis Francisella sp. CA97-1460 1542390 1 2566 species 0 Francisella persica 954 0 1 1695 species 0 14 14064 no rank 118884 32036 0 4 clade 4931 species 2061 1 0 410330 Calyptogena okutanii thioautotrophic gill symbiont 1541743 Candidatus Ruthia 0 18 1 1686 genus 2 Candidatus Ruthia magnifica 386487 1 species 1668 0 1 1184 species 0 Bathymodiolus septemdierum thioautotrophic gill symbiont 113267 Candidatus Thioglobus 655184 0 3 genus 4727 45 1 1 3349 species 0 Candidatus Thioglobus singularis 1427364 1705394 Candidatus Thioglobus autotrophicus 0 1333 species 1 198346 2540 clade 1 0 0 species 2540 1 186490 Candidatus Baumannia cicadellinicola 0 9 1 744 genus 2 349742 Sedimenticola 0 1 species 735 Sedimenticola thiotaurini 1543721 Pseudohongiella 1524249 0 1 4 2 genus 665 0 1 661 species Pseudohongiella spirulinae 1249552 0 2 genus 457 1 16 Thiolapillus 1608298 Thiolapillus brandeum 1076588 1 species 441 0 13 4178 order 14 1 0 Methylococcales 135618 41 1 12 4164 family 0 Methylococcaceae 403 Methylococcus 413 2 genus 293 2 1 0 Methylococcus capsulatus 414 0 1 species 291 0 463 genus 2 1 6 762296 Methylovulum Methylovulum psychrotolerans 1704499 0 1 457 species 416 Methylomonas 2378 genus 5 1 83 0 no rank 465 1 0 2608980 1727196 Methylomonas sp. DH-1 species 465 1 0 0 1 species 488 Methylomonas methanica 421 Methylomonas denitrificans 1538553 0 1 species 939 0 1 403 species Methylomonas koyamae 702114 Methylomicrobium 39773 0 2 genus 989 12 1 271065 Methylomicrobium alcaliphilum 0 species 977 1 0 47 1 47309 order 43 135623 Vibrionales Vibrionaceae 641 0 42 47262 family 200 1 657 Photobacterium 8902 genus 4 17 1 0 38293 Photobacterium damselae 0 species 7241 1 Photobacterium profundum 74109 1 1185 species 0 1295392 Photobacterium gaetbulicola 0 species 459 1 0 2 genus 3838 1 9 Paraphotobacterium 2042066 Paraphotobacterium marinum 1755811 1 3829 species 0 0 4374 genus 4 1 34 511678 Aliivibrio Aliivibrio wodanis 80852 0 1 1816 species 0 1 species 1052 Aliivibrio salmonicida 40269 0 1 species 1472 Aliivibrio fischeri 668 0 29527 genus 30 477 1 662 Vibrio species 696 1 0 28173 Vibrio nigripulchritudo 720 species 1 0 674 Vibrio mimicus Vibrio gazogenes 687 1 947 species 0 0 1 species 968 Vibrio furnissii 29494 Vibrio breoganii 553239 0 1 587 species 0 535 species 1 676 Vibrio fluvialis 212663 Vibrio tasmaniensis 859 species 1 0 1052 species 1 0 52443 Vibrio tapetis 1891919 0 1 965 species group 0 965 species 1 29498 Vibrio tubiashii Vibrio vulnificus 672 1 species 2637 0 species group 11030 10 0 717610 2315253 0 2 species subgroup 1430 150340 Vibrio antiquarius 0 species 525 1 0 1 species 905 Vibrio diabolicus 50719 Vibrio alginolyticus 663 0 1 2145 species species 1152 1 0 691 Vibrio natriegens 1 species 478 0 Vibrio rotiferianus 190895 669 Vibrio harveyi species 902 1 0 670 Vibrio parahaemolyticus species 1930 1 0 680 Vibrio campbellii 0 1794 species 1 766224 Vibrio jasicida 0 species 528 1 696485 Vibrio owensii species 671 1 0 2025808 Vibrio qinghaiensis species 637 1 0 666 Vibrio cholerae 938 species 1 0 0 1 1397 species Vibrio anguillarum 55601 190893 Vibrio coralliilyticus 0 1672 species 1 1 species 523 0 Vibrio hyugaensis 1534743 2614977 0 867 no rank 2 species 558 1 0 1116375 Vibrio sp. EJY3 0 1 309 species Vibrio sp. 2521-89 2014742 1435069 Vibrio tritonius species 888 1 0 45658 Vibrio scophthalmi species 1132 1 0 genus 421 1 0 246861 Grimontia hollisae 673 0 1 421 species Chromatiales 135613 1 123 52 order 16404 0 1676141 Wenzhouxiangellaceae 596 family 3 1 9 0 Wenzhouxiangella 1676142 0 2 genus 587 7 1 1579979 Wenzhouxiangella marina 0 580 species 1 3 1170 family 1 12 0 Granulosicoccaceae 449719 32 1 genus 1158 2 0 437504 Granulosicoccus 0 1126 species 1 437505 Granulosicoccus antarcticus family 4856 18 1 67 0 72276 Ectothiorhodospiraceae Acidihalobacter 1765964 2 genus 600 3 1 0 0 1 species 597 Acidihalobacter prosperus 160660 Spiribacter 1335745 14 1 3 genus 694 0 1335746 Spiribacter salinus species 313 1 0 0 species 367 1 1335757 Spiribacter curvatus 1051 Ectothiorhodospira 3 1 genus 423 2 0 2684909 0 420 no rank 1 1442136 Ectothiorhodospira sp. BSL-9 420 species 1 0 6 2247 genus 49 1 0 Thioalkalivibrio 106633 2621013 0 372 no rank 1 0 1 372 species Thioalkalivibrio sp. K90mix 396595 Thioalkalivibrio nitratireducens 186931 0 1 388 species Thioalkalivibrio paradoxus 108010 1 species 458 0 Thioalkalivibrio versutus 106634 1 304 species 0 0 1 species 676 Thioalkalivibrio sulfidiphilus 1033854 0 5 1 2 445 genus Alkalilimnicola 133193 440 species 1 0 351052 Alkalilimnicola ehrlichii Halorhodospira 85108 0 2 genus 380 1 1 1 species 379 0 Halorhodospira halophila 1053 0 443 no rank 2 451214 Thiohalobacter 1273155 0 21 1 2 genus 443 585455 Thiohalobacter thiocyanaticus 0 species 422 1 Chromatiaceae 1046 1 56 18 family 8028 0 0 2 506 genus 3 1 Thiocystis 13724 0 503 species 1 73141 Thiocystis violascens 2311 genus 2 31 1 0 53392 Thiodictyon 1166950 Candidatus Thiodictyon syntrophicum 0 2280 species 1 0 27 1 4 2085 genus Nitrosococcus 1227 1229 Nitrosococcus oceani 0 species 575 1 0 species 452 1 133539 Nitrosococcus halophilus 1 species 1031 0 Nitrosococcus watsonii 473531 553 genus 2 3 1 0 156885 Thioflavicoccus 0 1 species 550 Thioflavicoccus mobilis 80679 85072 Allochromatium genus 354 2 1 10 0 Allochromatium vinosum 1049 0 1 species 344 1 15 2 genus 1189 0 Candidatus Nitrosoglobus 1980513 1 species 1174 0 Candidatus Nitrosoglobus terrae 1630141 491 no rank 1 0 82569 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 491 species 1 Marichromatium 85076 0 12 1 2 483 genus 37487 Marichromatium purpuratum species 471 1 0 0 615 family 4 1 5 255526 Halothiobacillaceae 3 610 genus 1 21 0 Halothiobacillus 109262 2636392 0 259 no rank 1 Halothiobacillus sp. LS2 1860122 1 259 species 0 927 Halothiobacillus neapolitanus species 330 1 0 1738654 Woeseiaceae 1 1 573 family 3 0 1738655 Woeseia 572 genus 2 1 14 0 1548547 Woeseia oceani 0 species 558 1 Enterobacterales 91347 0 252 148757 order 399 1 1903410 Pectobacteriaceae family 7073 20 1 26 0 0 1 30 6 genus 2076 Dickeya 204037 0 1 species 250 Dickeya fangzhongdai 1778540 species 228 1 0 204039 Dickeya dianthicola 1089444 Dickeya solani 432 species 1 0 204042 Dickeya zeae 0 843 species 1 1 293 species 0 Dickeya dadantii 204038 122277 Pectobacterium 0 genus 2873 6 1 61 833 species 1 0 1905730 Pectobacterium parmentieri 0 1 975 species Pectobacterium carotovorum 554 Pectobacterium polaris 2042057 1 species 350 0 1 329 species 0 Pectobacterium atrosepticum 29471 0 species 325 1 55208 Pectobacterium wasabiae 84565 Sodalis 48 1 genus 1739 5 0 0 441 species 1 1486991 Candidatus Sodalis pierantonius Sodalis praecaptivus 1239307 1 327 species 0 1 595 species 0 Sodalis endosymbiont of Henestaris halophilus 1929246 328 species 1 0 63612 Sodalis glossinidius 0 4 1 2 359 genus Brenneria 71655 355 species 1 0 1109412 Brenneria goodwinii Hafniaceae 1903412 1 35 14 family 11891 0 0 8 10409 genus 76 1 Edwardsiella 635 1821960 Edwardsiella anguillarum species 503 1 0 636 Edwardsiella tarda 0 species 8251 1 67780 Edwardsiella ictaluri 325 species 1 0 2676541 2 714 no rank 0 1650654 Edwardsiella sp. LADL05-105 353 species 1 0 1 species 361 0 Edwardsiella sp. EA181011 1578828 93378 Edwardsiella hoshinae 0 species 218 1 1263550 Edwardsiella piscicida 322 species 1 0 Obesumbacterium 82982 0 2 1 2 291 genus Obesumbacterium proteus 82983 1 species 289 0 3 1156 genus 19 1 0 Hafnia 568 Hafnia alvei 569 1 836 species 0 1 301 no rank 0 2621980 0 1 species 301 Hafnia sp. CBA7124 1848580 Enterobacteriaceae 543 421 1 123 63251 family 0 1330546 Pluralibacter 0 1 5 genus 723 3 61647 Pluralibacter gergoviae species 436 1 0 1334193 [Enterobacter] lignolyticus 0 species 282 1 no rank 2152 5 0 36866 891974 Plautia stali symbiont 0 1269 species 1 1 species 173 0 Enterobacteriaceae bacterium strain FGI 57 693444 0 1 species 237 Enterobacteriaceae bacterium ENNIH1 2066051 1920109 Enterobacteriaceae bacterium ENNIH2 species 224 1 0 1 249 species 0 Enterobacteriaceae bacterium ENNIH3 1920128 1 160 8873 genus 10 0 570 Klebsiella 548 Klebsiella aerogenes species 1412 1 0 no rank 554 2 0 2608929 Klebsiella sp. LTGPAF-6F 1905288 0 1 species 274 1934254 Klebsiella sp. M5al species 280 1 0 Klebsiella pneumoniae 573 0 1 3543 species 1 species 816 0 Klebsiella michiganensis 1134687 1 551 species 0 Klebsiella variicola 244366 2026240 Klebsiella quasivariicola 0 214 species 1 Klebsiella oxytoca 571 0 1 species 1259 0 364 species 1 1463165 Klebsiella quasipneumoniae Shimwellia 1335483 0 2 209 genus 1 5 0 204 species 1 563 Shimwellia blattae Cedecea 158483 0 5 1 2 genus 792 0 787 species 1 158822 Cedecea neteri 1048757 1 genus 245 0 0 1 species 245 Candidatus Moranella endobia 1048758 0 10 1 genus 1526 2 409304 Candidatus Ishikawaella 168169 Candidatus Ishikawaella capsulata species 1516 1 0 0 1 40 8 genus 1759 Cronobacter 413496 413501 Cronobacter muytjensii 0 species 220 1 Cronobacter universalis 535744 1 177 species 0 Cronobacter turicensis 413502 1 species 188 0 0 1 species 451 Cronobacter sakazakii 28141 1163710 Cronobacter condimenti 0 species 247 1 0 211 species 1 413503 Cronobacter malonaticus 0 1 species 225 Cronobacter dublinensis 413497 0 238 1 22 genus 6831 Enterobacter 547 0 9 no rank 1356 2608935 206 species 1 0 399742 Enterobacter sp. 638 191 species 1 0 1914861 Enterobacter sp. SA187 1 120 species 0 Enterobacter sp. Crenshaw 1977566 82 species 1 0 1868135 Enterobacter sp. HK169 Enterobacter sp. E20 1560339 0 1 109 species 1827481 Enterobacter sp. ODB01 0 species 117 1 Enterobacter sp. CRENT-193 2051905 0 1 133 species 0 1 species 203 Enterobacter sp. FY-07 1692238 1 species 195 0 Enterobacter sp. R4-368 1166130 354276 0 12 5237 species group 1 165 species 0 Enterobacter ludwigii 299767 2757714 0 362 no rank 3 Enterobacter cloacae complex bacterium 2027919 1 species 99 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 2077137 0 1 161 species 1915310 Enterobacter cloacae complex sp. ECNIH7 0 species 102 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 1812935 0 1 species 98 61645 Enterobacter asburiae 0 species 478 1 Enterobacter hormaechei 158836 0 3 1436 species 1 1120 subspecies 208 1 0 1812934 Enterobacter cloacae complex 'Hoffmann cluster III' Enterobacter xiangfangensis 1296536 1 108 subspecies 0 Enterobacter kobei 208224 1 species 131 0 2367 species 1 0 550 Enterobacter cloacae 69218 Enterobacter cancerogenus 0 species 200 1 1330545 Lelliottia 0 1 1 genus 992 4 0 196 species 1 69220 Lelliottia nimipressuralis 0 1 species 549 Lelliottia amnigena 61646 1907578 Lelliottia jeotgali 246 species 1 0 0 2 295 genus 1 1 Kluyvera 579 61648 Kluyvera intermedia 294 species 1 0 544 Citrobacter 0 160 1 genus 4973 14 67824 Citrobacter farmeri species 680 1 0 species group 2642 7 0 1344959 0 346 species 1 57706 Citrobacter braakii 0 species 174 1 2066049 Citrobacter freundii complex sp. CFNIH2 2077149 Citrobacter freundii complex sp. CFNIH9 0 species 221 1 0 415 species 1 67827 Citrobacter werkmanii Citrobacter freundii 546 0 1 species 1119 2077147 Citrobacter freundii complex sp. CFNIH3 0 173 species 1 Citrobacter freundii complex sp. CFNIH4 2077148 0 1 species 194 2 no rank 415 0 2644389 1920110 Citrobacter sp. CFNIH10 0 231 species 1 0 184 species 1 1702170 Citrobacter sp. FDAARGOS_156 Citrobacter koseri 545 1 271 species 0 0 270 species 1 67825 Citrobacter rodentium 0 535 species 1 35703 Citrobacter amalonaticus 4 genus 504 17 1 0 Shigella 620 0 1 species 125 Shigella flexneri 623 129 no rank 1 0 2629414 1813821 Shigella sp. PAMC 28760 0 species 129 1 622 Shigella dysenteriae 0 species 233 1 Escherichia 561 0 21 1 5 8159 genus Escherichia albertii 208962 1 species 624 0 562 Escherichia coli 0 species 7104 1 Escherichia marmotae 1499973 0 1 species 239 0 1 species 171 Escherichia fergusonii 564 0 genus 1066 3 1 9 160674 Raoultella Raoultella planticola 575 1 266 species 0 791 species 1 0 54291 Raoultella ornithinolytica 0 5 genus 1144 12 1 Kosakonia 1330547 283686 Kosakonia radicincitans 399 species 1 0 0 1 208 species Kosakonia sacchari 1158459 1 211 species 0 Kosakonia cowanii 208223 0 314 species 1 497725 Kosakonia oryzae Candidatus Riesia 401618 2 1065 genus 1 7 0 401619 Candidatus Riesia pediculicola 1058 species 1 0 83654 Leclercia 0 717 genus 4 13 1 0 291 species 1 83655 Leclercia adecarboxylata 2627398 0 no rank 413 2 0 193 species 1 1920114 Leclercia sp. LSNIH1 Leclercia sp. LSNIH3 1920116 0 1 species 220 191675 0 13449 no rank 21 0 21 clade 13449 84563 0 4 clade 1798 146507 275 species 1 0 1199245 secondary endosymbiont of Ctenarytaina eucalypti 736 genus 2 1 10 0 568987 Candidatus Hamiltonella 138072 Candidatus Hamiltonella defensa 0 726 species 1 134287 secondary endosymbiont of Heteropsylla cubana 0 species 787 1 84564 0 7 6963 clade 203804 Candidatus Blochmannia genus 6963 7 1 44 0 1 species 886 0 Candidatus Blochmannia pennsylvanicus 101534 711328 2 no rank 2360 0 1262 species 1 0 1505597 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1 1098 species 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505596 251535 Candidatus Blochmannia vafer 0 1426 species 1 0 1 species 1288 Candidatus Blochmannia floridanus 203907 Candidatus Blochmannia chromaiodes 251542 0 1 959 species 323 genus 1 0 1906659 1 species 323 0 Candidatus Hoaglandella endobia 1778263 1906660 Candidatus Mikella 864 genus 2 2 1 0 1778264 Candidatus Mikella endobia 0 862 species 1 703 clade 1 0 199891 secondary endosymbiont of Trabutina mannipara 1835721 0 1 species 703 0 1 1 213 genus 2 1906657 Candidatus Doolittlea Candidatus Doolittlea endobia 1778262 0 1 212 species Candidatus Gullanella 1906661 0 2 625 genus 3 1 1 622 species 0 Candidatus Gullanella endobia 1070130 Candidatus Tachikawaea 1682492 2 genus 1960 1 3 0 1410383 Candidatus Tachikawaea gelatinosa 1957 species 1 0 Salmonella 590 0 3 7356 genus 14 1 0 species 6962 1 28901 Salmonella enterica 1 species 380 0 Salmonella bongori 54736 0 family 19070 39 1 38 1903411 Yersiniaceae 0 281 genus 2 10 1 929812 Gibbsiella 0 species 271 1 929813 Gibbsiella quercinecans Chania 1745211 0 1 2 2 332 genus 1 330 species 0 Chania multitudinisentens 1639108 1565532 Rouxiella genus 3 1 0 0 genus 8016 16 184 1 613 Serratia 0 1 1114 species Serratia fonticola 47917 614 Serratia liquefaciens 355 species 1 0 species 2307 1 0 615 Serratia marcescens 0 1 species 286 Serratia ficaria 61651 28151 Serratia proteamaculans species 200 1 0 663 species 1 0 82996 Serratia plymuthica no rank 2649 8 0 2647522 1 215 species 0 Serratia sp. AS13 768493 0 1 species 242 Serratia sp. FGI94 671990 Serratia sp. AS12 768490 0 1 species 215 Serratia sp. MYb239 2033438 1 species 269 0 0 1 347 species Serratia sp. FS14 1327989 104623 Serratia sp. ATCC 39006 0 429 species 1 488142 Serratia sp. SCBI 0 species 667 1 265 species 1 0 1758196 Serratia sp. SSNIH1 61652 Serratia rubidaea 0 species 258 1 0 genus 9546 13 163 1 629 Yersinia 0 3 species group 3229 1649845 species 1038 1 0 633 Yersinia pseudotuberculosis 934 species 1 0 632 Yersinia pestis 367190 Yersinia similis 0 species 1257 1 0 1 584 species Yersinia ruckeri 29486 1833 species 1 0 630 Yersinia enterocolitica Yersinia aldovae 29483 1 species 475 0 Yersinia aleksiciae 263819 1 species 272 0 2653513 0 1 415 no rank 1 species 415 0 Yersinia sp. FDAARGOS_228 1839800 1 510 species 0 Yersinia kristensenii 28152 1145 species 1 0 29484 Yersinia frederiksenii 1 species 467 0 Yersinia rohdei 29485 631 Yersinia intermedia 453 species 1 0 0 854 genus 4 17 1 34037 Rahnella 602 no rank 2 0 2635087 0 370 species 1 1805933 Rouxiella sp. ERMR1:05 0 1 232 species Rahnella sp. Y9602 741091 0 1 235 species Rahnella aquatilis 34038 Morganellaceae 1903414 0 1 58 22 14781 family 0 22 1 genus 3841 3 583 Proteus Proteus mirabilis 584 0 1 species 2515 Proteus vulgaris 585 0 1 species 1304 Photorhabdus 29487 0 4 2534 genus 1 17 29488 Photorhabdus luminescens species 861 1 0 0 1 972 species Photorhabdus asymbiotica 291112 0 1 species 684 Photorhabdus temperata 574560 0 16 1 genus 2942 4 586 Providencia 587 Providencia rettgeri species 1098 1 0 1 species 612 0 Providencia alcalifaciens 126385 Providencia stuartii 588 0 1 species 1216 2 genus 1809 6 1 0 Arsenophonus 637 0 1 species 1803 Arsenophonus symbiont of Lipoptena fortisetosa 634113 0 2 genus 499 1 3 Morganella 581 1 species 496 0 Morganella morganii 582 626 Xenorhabdus genus 3098 6 33 1 0 40577 Xenorhabdus poinarii 0 species 490 1 Xenorhabdus bovienii 40576 1 species 964 0 628 Xenorhabdus nematophila 0 580 species 1 594 species 1 0 351679 Xenorhabdus hominickii Xenorhabdus doucetiae 351671 0 1 437 species 1903409 Erwiniaceae 0 52 1 31301 family 28 0 genus 4533 11 1 142 53335 Pantoea 0 species 244 1 1076550 Pantoea rwandensis 0 no rank 862 3 2630326 Pantoea sp. At-9b 592316 0 1 301 species 0 287 species 1 1484157 Pantoea sp. PSNIH2 0 1 274 species Pantoea sp. PSNIH1 1484158 0 1 species 1147 Candidatus Pantoea carbekii 1235990 0 1 species group 498 1654067 0 498 species 1 549 Pantoea agglomerans 1891675 Pantoea alhagi species 285 1 0 Pantoea stewartii 66269 0 1 246 species Pantoea ananatis 553 1 446 species 0 0 1 species 663 Pantoea vagans 470934 0 1 37 genus 19614 2 32199 Buchnera 1 species 19577 0 Buchnera aphidicola 9 2 3819 genus 1 44 0 Wigglesworthia 51228 species 3775 1 0 51229 Wigglesworthia glossinidia 82986 Tatumella 2 1 336 genus 2 0 334 species 1 0 53336 Tatumella citrea 0 genus 565 2 2100764 0 species 241 1 665914 Pantoea gaviniae 324 species 1 0 665913 Pantoea calida 35 1 genus 2382 8 0 551 Erwinia Erwinia gerundensis 1619313 1 species 269 0 1922217 Candidatus Erwinia sp. ErCipseudotaxifoliae species 704 1 0 79967 Erwinia pyrifoliae 0 species 225 1 1 species 269 0 Erwinia amylovora 552 Erwinia tasmaniensis 338565 1 species 252 0 Erwinia billingiae 182337 1 species 406 0 2622719 1 222 no rank 0 0 1 species 222 Erwinia sp. Ejp617 215689 507 no rank 2 0 451511 702 Plesiomonas 0 genus 507 2 4 1 Plesiomonas shigelloides 703 1 503 species 0 Budviciaceae 1903416 12 1 3 family 484 0 0 genus 472 2 5 1 82984 Pragia 0 467 species 1 82985 Pragia fontium Legionellales 118969 0 34 1 21 order 25776 3470 family 5 40 1 0 118968 Coxiellaceae 0 1 no rank 1110 134284 Coxiella-like endosymbiont 1592897 1 1110 species 0 1 14 genus 2320 3 0 776 Coxiella 0 1089 species 1 777 Coxiella burnetii 1217 no rank 1 0 2676648 325775 Coxiella endosymbiont of Amblyomma americanum 0 species 1217 1 444 Legionellaceae 61 1 family 22272 15 0 0 1 120 12 genus 20914 Legionella 445 1867846 Legionella clemsonensis species 1381 1 0 0 species 1903 1 450 Legionella longbeachae Legionella sainthelensi 28087 0 1 2076 species 0 1 species 1861 Legionella fallonii 96230 Legionella pneumophila 446 1 5817 species 0 1 1097 species 0 Legionella oakridgensis 29423 Legionella waltersii 66969 0 1 1452 species species 1342 1 0 449 Legionella hackeliae 0 2087 species 1 2005262 Legionella endosymbiont of Polyplax serrata Legionella spiritensis 452 0 1 597 species species 1181 1 0 45067 Legionella lansingensis 0 1 12 2 genus 1297 Tatlockia 465 451 Tatlockia micdadei species 1285 1 0 135619 Oceanospirillales order 28238 72 79 1 0 0 1 19 9 family 3034 Alcanivoracaceae 224372 59753 Alcanivorax 0 59 1 2388 genus 6 59754 Alcanivorax borkumensis 0 species 446 1 1 species 447 0 Alcanivorax dieselolei 285091 Alcanivorax xenomutans 1094342 1 480 species 0 1306787 Alcanivorax pacificus 0 species 554 1 0 no rank 402 1 2638842 0 species 402 1 1113728 Alcanivorax sp. NBRC 101098 7 1 genus 627 2 0 2025617 Ketobacter Ketobacter alkanivorans 1917421 0 1 620 species 28256 Halomonadaceae 70 1 12217 family 32 0 0 1 343 genus 42054 species 343 1 0 158080 Chromohalobacter salexigens 1 5 433 genus 2 0 404432 Salinicola 428 species 1 0 1771309 Salinicola tamaricis 1 112 genus 6530 15 0 2745 Halomonas 1 species 467 0 Halomonas campaniensis 213554 0 1 species 443 Halomonas aestuarii 1897729 Halomonas beimenensis 475662 0 1 species 644 Halomonas chromatireducens 507626 1 321 species 0 0 1 species 413 Halomonas hydrothermalis 115561 478 species 1 0 1178482 Halomonas huangheensis 0 8 no rank 3652 2609666 2136172 Halomonas sp. SF2003 species 473 1 0 1610576 Halomonas sp. R57-5 0 429 species 1 1504981 Halomonas sp. KO116 species 511 1 0 1 577 species 0 Halomonas sp. GT 1971364 1883416 Halomonas sp. 1513 0 species 420 1 0 1 species 447 Halomonas sp. 'Soap Lake #6' 1949203 Halomonas sp. GFAJ-1 1118153 0 1 343 species 0 1 452 species Halomonas sp. 'Soap Lake #7' 1962264 114403 3067 no rank 6 0 0 genus 1171 2 5 1 1495768 Candidatus Evansia 1495769 Candidatus Evansia muelleri 0 1166 species 1 114185 Candidatus Carsonella 0 3 1 593 genus 2 Candidatus Carsonella ruddii 114186 1 590 species 0 0 1 2 2 genus 1303 Candidatus Portiera 235572 0 species 1301 1 91844 Candidatus Portiera aleyrodidarum 204286 Cobetia 2 1 genus 526 2 0 Cobetia marina 28258 1 species 524 0 Halotalea 376488 2 genus 445 1 1 0 1 444 species 0 Halotalea alkalilenta 376489 504090 Kushneria 20 1 803 genus 3 0 1 433 species 0 Kushneria konosiri 698828 species 350 1 0 157779 Kushneria marisflavi family 3140 6 10 1 0 1920240 Kangiellaceae Kangiella 261963 5 3130 genus 52 1 0 1144748 Kangiella sediminilitoris species 803 1 0 914150 Kangiella geojedonensis 0 609 species 1 0 1 858 species Kangiella profundi 1561924 Kangiella koreensis 261964 1 808 species 0 0 1 2 3 647 family Hahellaceae 224379 1 13 genus 645 2 0 158481 Hahella 632 species 1 0 158327 Hahella chejuensis 0 2 1 1483 family 5 255527 Saccharospirillaceae 1445504 Gynuella 0 genus 829 2 1 9 1445505 Gynuella sunshinyii 820 species 1 0 Reinekea 230494 4 1 2 652 genus 0 1 648 species 0 Reinekea forsetii 1336806 Oceanospirillaceae 135620 0 13 family 6761 41 1 1537406 Bacterioplanes genus 666 2 10 1 0 0 656 species 1 1249553 Bacterioplanes sanyensis 1 14 4 genus 3226 0 Marinomonas 28253 0 1 792 species Marinomonas posidonica 936476 species 984 1 0 119864 Marinomonas mediterranea 196814 0 no rank 1436 1 species 1436 1 0 400668 Marinomonas sp. MWYL1 188907 Oleispira 6 1 1063 genus 2 0 Oleispira antarctica 188908 1 species 1057 0 Thalassolituus 187492 2 899 genus 5 1 0 187493 Thalassolituus oleivorans 0 894 species 1 0 4 1 866 genus 2 48075 Marinobacterium 1 862 species 0 Marinobacterium aestuarii 1821621 191033 Oleiphilaceae 0 family 877 3 1 24 2 853 genus 4 1 0 Oleiphilus 141450 0 849 species 1 141451 Oleiphilus messinensis 1 1 4 order 586 0 Cardiobacteriales 135615 0 family 585 3 10 1 868 Cardiobacteriaceae 3 1 2 genus 575 0 Dichelobacter 869 572 species 1 0 870 Dichelobacter nodosus Aeromonadales 135624 0 29 10270 order 57 1 28 10213 family 99 1 0 Aeromonadaceae 84642 Oceanimonas 129577 0 2 385 genus 9 1 1 376 no rank 0 2636315 511062 Oceanimonas sp. GK1 species 376 1 0 271 1 7787 genus 18 0 642 Aeromonas 2555 no rank 8 0 257493 1 269 species 0 Aeromonas sp. CU5 2033033 Aeromonas sp. ASNIH7 1920107 1 species 182 0 Aeromonas sp. ASNIH1 1636606 0 1 species 772 2033032 Aeromonas sp. CA23 0 species 335 1 339 species 1 0 1636609 Aeromonas sp. ASNIH4 1758179 Aeromonas sp. ASNIH5 0 species 301 1 species 154 1 0 1636608 Aeromonas sp. ASNIH3 0 species 203 1 1636607 Aeromonas sp. ASNIH2 Aeromonas salmonicida 645 1 species 1156 0 0 299 species 1 196024 Aeromonas dhakensis Aeromonas media 651 1 211 species 0 Aeromonas schubertii 652 1 224 species 0 0 1 species 1577 Aeromonas hydrophila 644 654 Aeromonas veronii 0 species 844 1 Aeromonas caviae 648 0 1 species 131 Aeromonas rivipollensis 948519 1 207 species 0 0 1 species 312 Aeromonas aquatica 558964 0 998 genus 3 15 1 225143 Oceanisphaera 1416627 Oceanisphaera profunda 0 380 species 1 1903694 Oceanisphaera sp. AMac2203 species 603 1 0 1 6 536 genus 2 0 347533 Zobellella 347534 Zobellella denitrificans 0 530 species 1 Tolumonas 43947 1 8 2 genus 408 0 0 1 species 400 Tolumonas auensis 43948 Xanthomonadales 135614 0 52 32071 order 1 155 37 29020 family 258 1 0 Xanthomonadaceae 32033 68 Lysobacter 0 4210 genus 5 23 1 262324 Lysobacter gummosus 0 628 species 1 435897 Lysobacter capsici 0 1342 species 1 69 Lysobacter enzymogenes 0 species 548 1 1669 species 1 0 84531 Lysobacter antibioticus 83614 1 277 genus 0 1 species 277 0 Luteimonas sp. 100111 2006110 1 282 14246 genus 17 0 338 Xanthomonas 1 species 249 0 Xanthomonas axonopodis 53413 Xanthomonas euvesicatoria 456327 1 346 species 0 Xanthomonas translucens 343 1 species 1137 0 0 340 species 1 56454 Xanthomonas hortorum Xanthomonas campestris 339 0 1 species 2046 species 290 1 0 442694 Xanthomonas perforans 0 1 3178 species Xanthomonas oryzae 347 Xanthomonas vasicola 56459 1 232 species 0 Xanthomonas alfalfae 366650 0 1 339 species 0 1 species 446 Xanthomonas sacchari 56458 0 species group 3390 2 643453 Xanthomonas fuscans 366648 1 749 species 0 0 species 2641 1 346 Xanthomonas citri 1985254 Xanthomonas phaseoli 294 species 1 0 0 species 548 1 56460 Xanthomonas vesicatoria Xanthomonas fragariae 48664 0 1 species 769 0 species 360 1 29447 Xanthomonas albilineans Pseudoxanthomonas 83618 0 3 1 3 genus 1025 0 species 299 1 415229 Pseudoxanthomonas spadix 1 species 723 0 Pseudoxanthomonas suwonensis 314722 0 9 genus 6895 82 1 Stenotrophomonas 40323 995085 0 1 3627 species group 3627 species 1 0 40324 Stenotrophomonas maltophilia 216778 Stenotrophomonas rhizophila species 327 1 0 4 no rank 1828 0 196198 2005046 Stenotrophomonas sp. WZN-1 0 species 531 1 1827305 Stenotrophomonas sp. MYb57 0 640 species 1 1 238 species 0 Stenotrophomonas sp. LM091 1904944 1 419 species 0 Stenotrophomonas sp. KCTC 12332 1793721 83617 Stenotrophomonas nitritireducens species 439 1 0 Stenotrophomonas acidaminiphila 128780 0 1 592 species genus 2109 1 0 2370 2371 Xylella fastidiosa 2109 species 1 0 1 40 2896 family 14 0 1775411 Rhodanobacteraceae Rhodanobacter 75309 2 genus 500 13 1 0 0 species 487 1 666685 Rhodanobacter denitrificans 2233801 0 genus 281 1 1 281 species 0 Xanthomonadales bacterium D13 2021234 0 1 5 356 genus 2 70411 Frateuria 81475 Frateuria aurantia 0 351 species 1 1 1 2 277 genus 0 Luteibacter 242605 1 species 276 0 Luteibacter rhizovicinus 242606 0 4 954 genus 1 25 Dyella 231454 species 302 1 0 1379159 Dyella jiangningensis 231455 Dyella japonica 0 species 314 1 Dyella thiooxydans 445710 0 1 313 species 323413 Dokdonella 0 488 genus 2 4 1 1 species 484 0 Dokdonella koreensis 323415 1775403 Nevskiales 1 27 463 order 4 0 568386 Sinobacteraceae 0 family 2 1 2689614 family 434 2 0 0 genus 434 2 1 44 469322 Steroidobacter 0 1 species 390 Steroidobacter denitrificans 465721 6 order 1143 1 12 0 Acidiferrobacterales 1692040 1692041 Acidiferrobacteraceae 14 1 1131 family 5 0 1692042 Sulfurifustis 744 genus 2 1 5 0 Sulfurifustis variabilis 1675686 0 1 species 739 2 373 genus 1 9 0 Sulfuricaulis 1744881 0 1 species 364 Sulfuricaulis limicola 1620215 72274 Pseudomonadales order 97709 129 287 1 0 Pseudomonadaceae 135621 0 86 family 49372 1 296 0 1259 subfamily 3 351 0 1 15 3 1259 genus Azotobacter 352 353 Azotobacter chroococcum 0 species 834 1 1 species 410 0 Azotobacter vinelandii 354 Oblitimonas 1849530 0 2 genus 760 3 1 757 species 1 0 1697053 Oblitimonas alkaliphila 286 Pseudomonas 0 47057 genus 80 1103 1 237610 Pseudomonas psychrotolerans 379 species 1 0 9 species group 8468 0 136843 294 Pseudomonas fluorescens 5366 species 1 0 Pseudomonas corrugata 47879 1 216 species 0 1 species 795 0 Pseudomonas azotoformans 47878 1 493 species 0 Pseudomonas protegens 380021 75612 Pseudomonas mandelii species 283 1 0 76758 Pseudomonas orientalis species 163 1 0 200450 Pseudomonas trivialis 714 species 1 0 200451 Pseudomonas poae 198 species 1 0 240 species 1 0 76761 Pseudomonas veronii Pseudomonas cremoricolorata 157783 1 species 206 0 136849 0 species group 4674 8 251695 0 1 species subgroup 2150 1 species 2150 0 Pseudomonas syringae 317 Pseudomonas viridiflava 33069 0 1 205 species 0 1 704 species Pseudomonas syringae group genomosp. 3 251701 Pseudomonas avellanae 46257 1 species 262 0 0 no rank 289 1 2775504 Pseudomonas sp. Lz4W 1206777 1 289 species 0 251698 2 species subgroup 820 0 Pseudomonas savastanoi 29438 1 465 species 0 0 355 species 1 47877 Pseudomonas amygdali 0 species 244 1 36746 Pseudomonas cichorii 316 species 1 0 65741 Pseudomonas knackmussii 1788301 Pseudomonas versuta 0 238 species 1 6233 species group 6 0 136841 Pseudomonas aeruginosa 287 0 1 species 3057 species 1228 1 0 300 Pseudomonas mendocina species subgroup 583 1 0 1232139 Pseudomonas furukawaii 1149133 0 1 583 species 1 345 species 0 Pseudomonas alcaligenes 43263 Pseudomonas resinovorans 53412 1 325 species 0 53408 Pseudomonas citronellolis 0 695 species 1 Pseudomonas frederiksbergensis 104087 1 745 species 0 219572 Pseudomonas antarctica 0 211 species 1 6 6416 species group 0 136845 894 species 1 0 76759 Pseudomonas monteilii species 3570 1 0 303 Pseudomonas putida species 233 1 0 70775 Pseudomonas plecoglossicida Pseudomonas oryzihabitans 47885 1 410 species 0 1 889 species 0 Pseudomonas mosselii 78327 0 species 420 1 47880 Pseudomonas fulva 0 1 species 371 Pseudomonas alcaliphila 101564 196821 30 9000 no rank 0 0 species 301 1 1611770 Pseudomonas sp. MRSN12121 0 1 species 228 Pseudomonas sp. SWI44 2083053 0 243 species 1 1649877 Pseudomonas sp. CCOS 191 species 373 1 0 1931241 Pseudomonas sp. S-6-2 327 species 1 0 1500686 Pseudomonas sp. Os17 2083055 Pseudomonas sp. LH1G9 species 238 1 0 species 528 1 0 1930532 Pseudomonas sp. CC6-YY-74 0 1 277 species Pseudomonas sp. GR 6-02 1659194 1283291 Pseudomonas sp. URMO17WK12:I11 0 species 497 1 1028989 Pseudomonas sp. StFLB209 0 301 species 1 1338689 Pseudomonas sp. JY-Q 262 species 1 0 0 1 species 275 Pseudomonas sp. St29 1500687 species 270 1 0 2083051 Pseudomonas sp. SWI6 0 207 species 1 69328 Pseudomonas sp. VLB120 Pseudomonas sp. XWY-1 2069256 1 species 283 0 Pseudomonas sp. MYb193 1827300 0 1 species 228 0 species 226 1 2049589 Pseudomonas sp. HLS-6 0 species 211 1 1207075 Pseudomonas sp. UW4 0 species 317 1 2067572 Pseudomonas sp. NC02 species 255 1 0 1636610 Pseudomonas sp. PONIH3 0 414 species 1 1981174 Pseudomonas sp. M30-35 2018067 Pseudomonas sp. FDAARGOS_380 198 species 1 0 2083054 Pseudomonas sp. LG1D9 216 species 1 0 1259844 Pseudomonas sp. FGI182 species 227 1 0 0 572 species 1 1415630 Pseudomonas sp. TKP 266 species 1 0 1534110 Pseudomonas sp. DR 5-09 Pseudomonas sp. ATCC 13867 1294143 1 350 species 0 1 319 species 0 Pseudomonas sp. TCU-HL1 1856685 2083052 Pseudomonas sp. SWI36 species 249 1 0 0 342 species 1 1898684 Pseudomonas sp. LPH1 0 species 585 1 198620 Pseudomonas koreensis 1 species 176 0 Pseudomonas lurida 244566 216142 Pseudomonas rhizosphaerae species 193 1 0 Pseudomonas silesiensis 1853130 0 1 599 species 598 species 1 0 157782 Pseudomonas parafulva 0 210 species 1 312306 Pseudomonas entomophila 136842 0 species group 2289 2 0 1 species 720 Pseudomonas fragi 296 species 1569 1 0 587753 Pseudomonas chlororaphis 136846 0 2884 species group 2 578833 2547 species subgroup 1 0 316 Pseudomonas stutzeri 0 2547 species 1 74829 Pseudomonas balearica species 337 1 0 237609 Pseudomonas alkylphenolica species 245 1 0 1583341 Pseudomonas cerasi species 365 1 0 930166 Pseudomonas brassicacearum 0 species 553 1 Moraxellaceae 468 102 1 42 48050 family 0 475 Moraxella 43 1 genus 3828 5 0 1582 species 1 0 34062 Moraxella osloensis 0 1 species 982 Moraxella catarrhalis 480 Moraxella ovis 29433 1 488 species 0 0 733 species 1 386891 Moraxella bovoculi 382 1 35877 genus 25 0 469 Acinetobacter 29430 Acinetobacter haemolyticus 0 1383 species 1 1324350 Acinetobacter equi 0 1978 species 1 Acinetobacter radioresistens 40216 0 1 782 species 40215 Acinetobacter junii species 1532 1 0 909768 0 15972 species group 5 470 Acinetobacter baumannii species 5550 1 0 Acinetobacter nosocomialis 106654 0 1 species 1660 1230 species 1 0 1785128 Acinetobacter lactucae 0 2351 species 1 471 Acinetobacter calcoaceticus 5181 species 1 0 48296 Acinetobacter pittii 196816 0 6189 no rank 7 Acinetobacter sp. TTH0-4 1646498 1 1111 species 0 1 species 1068 0 Acinetobacter sp. ACNIH2 1758189 0 1 species 575 Acinetobacter sp. LoGeW2-3 1808001 0 817 species 1 2079596 Acinetobacter sp. SWBY1 1636603 Acinetobacter sp. ACNIH1 species 958 1 0 0 species 786 1 1608473 Acinetobacter sp. NCu2D-2 0 874 species 1 1407071 Acinetobacter sp. TGL-Y2 202950 species 1055 1 0 0 1055 strain 1 62977 Acinetobacter sp. ADP1 Acinetobacter indicus 756892 0 1 455 species 0 796 species 1 487316 Acinetobacter soli 0 811 species 1 40214 Acinetobacter johnsonii 0 species 1372 1 106648 Acinetobacter bereziniae 0 849 species 1 1789224 Acinetobacter larvae Acinetobacter schindleri 108981 0 1 species 910 1148157 Acinetobacter oleivorans 0 1411 species 1 Psychrobacter 497 11 genus 8243 1 146 0 Psychrobacter alimentarius 261164 1 species 994 0 Psychrobacter urativorans 45610 1 751 species 0 6 4974 no rank 0 196806 0 1 species 743 Psychrobacter sp. G 571800 1 865 species 0 Psychrobacter sp. P11G5 1699624 Psychrobacter sp. AntiMn-1 1720344 0 1 species 943 0 745 species 1 1028416 Psychrobacter sp. DAB_AL43B 0 1 913 species Psychrobacter sp. PRwf-1 349106 Psychrobacter sp. P2G3 1699622 1 765 species 0 Psychrobacter arcticus 334543 1 660 species 0 330922 Psychrobacter cryohalolentis 718 species 1 0 105 121784 order 1 232 0 Alteromonadales 135622 Shewanellaceae 267890 0 36 1 25 family 18046 0 genus 18010 24 236 1 22 Shewanella 1 species 1127 0 Shewanella frigidimarina 56812 0 6 2967 no rank 196818 60480 Shewanella sp. MR-4 336 species 1 0 Shewanella sp. W3-18-1 351745 0 1 species 782 Shewanella sp. ANA-3 94122 0 1 375 species 2029986 Shewanella sp. WE21 0 species 476 1 Shewanella sp. MR-7 60481 1 species 349 0 649 species 1 0 2059264 Shewanella sp. Pdp11 1 species 268 0 Shewanella amazonensis 60478 Shewanella violacea 60217 0 1 1022 species 1 species 407 0 Shewanella oneidensis 70863 62322 Shewanella baltica 0 species 1713 1 994 species 1 0 192073 Shewanella denitrificans 271098 Shewanella halifaxensis 0 species 1406 1 Shewanella loihica 359303 1 331 species 0 0 1508 species 1 225848 Shewanella psychrophila 0 593 species 1 70864 Shewanella pealeana 0 795 species 1 404011 Shewanella piezotolerans 2018305 Shewanella bicestrii 387 species 1 0 Shewanella woodyi 60961 0 1 species 994 0 829 species 1 24 Shewanella putrefaciens 271097 Shewanella sediminis 0 species 899 1 260364 Shewanella marisflavi species 302 1 0 Shewanella japonica 93973 0 1 1232 species 0 8 1 family 2859 4 267894 Psychromonadaceae Psychromonas 67572 0 13 1 3 2851 genus Psychromonas ingrahamii 357794 1 species 1483 0 2614957 1 no rank 1355 0 0 1 1355 species Psychromonas sp. CNPT3 314282 6 1887 family 1 4 0 Idiomarinaceae 267893 0 5 genus 1883 1 15 Idiomarina 135575 Idiomarina loihiensis 135577 1 526 species 0 2614829 no rank 846 2 0 species 327 1 0 2100422 Idiomarina sp. OT37-5b Idiomarina sp. X4 2055892 0 1 519 species 1 496 species 0 Idiomarina piscisalsi 1096243 72275 Alteromonadaceae 0 58274 family 29 45 1 0 genus 794 1 1751872 Lacimicrobium alkaliphilum 1526571 0 1 794 species 0 1 17 3 genus 2045 Glaciecola 89404 300231 Glaciecola nitratireducens species 1017 1 0 2618684 0 no rank 1011 1 species 1011 1 0 983545 Glaciecola sp. 4H-3-7+YE-5 Agarivorans 261825 1 1 2 681 genus 0 1 species 680 0 Agarivorans gilvus 680279 2742 Marinobacter 0 1 109 3941 genus 10 83889 0 3 1347 no rank 1671721 Marinobacter sp. CP1 species 371 1 0 490759 Marinobacter sp. BSs20148 0 species 508 1 species 468 1 0 1749259 Marinobacter sp. LQ44 1874317 Marinobacter salinus species 380 1 0 0 373 species 1 1033846 Marinobacter adhaerens Marinobacter salarius 1420917 0 1 392 species species 532 1 0 2743 Marinobacter hydrocarbonoclasticus 457 species 1 0 330734 Marinobacter psychrophilus 0 1 species 351 Marinobacter similis 1420916 0 10 48491 genus 169 1 Alteromonas 226 3 3233 no rank 0 2614992 Alteromonas sp. RW2A1 1917158 0 1 species 1276 0 1 species 842 Alteromonas sp. Mac1 1777491 0 1 1115 species Alteromonas sp. MB-3u-76 2058133 0 1 1840 species Alteromonas naphthalenivorans 715451 Alteromonas australica 589873 1 1472 species 0 1 972 species 0 Alteromonas addita 287094 Alteromonas stellipolaris 233316 1 1107 species 0 1 species 5601 0 Alteromonas mediterranea 314275 28108 Alteromonas macleodii 0 34097 species 1 1621534 Paraglaciecola 2277 genus 2 14 1 0 Paraglaciecola psychrophila 326544 1 species 2263 0 2 1 3 296 family 0 Ferrimonadaceae 267892 Ferrimonas 44011 0 3 1 2 294 genus Ferrimonas balearica 44012 0 1 291 species Moritellaceae 267891 3 family 1670 1 24 0 2 genus 1646 6 1 0 Moritella 58050 Moritella viscosa 80854 0 1 species 1640 267889 Colwelliaceae family 10758 9 1 30 0 0 9201 genus 6 43 1 28228 Colwellia 196834 3 no rank 5453 0 0 species 1568 1 58049 Colwellia sp. MT41 0 1 2043 species Colwellia sp. PAMC 21821 1816219 0 species 1842 1 1816218 Colwellia sp. PAMC 20917 0 species 1803 1 1967665 Colwellia beringensis 28229 Colwellia psychrerythraea 0 1902 species 1 0 1527 genus 2 1 6 1518149 Thalassotalea 1763536 Thalassotalea crassostreae species 1521 1 0 1 37 27762 family 25 0 267888 Pseudoalteromonadaceae 0 24 27725 genus 1 537 Pseudoalteromonas 53246 0 1 species 700 Pseudoalteromonas rubra 43658 0 species 1172 1 1348114 Pseudoalteromonas piratica 161398 Pseudoalteromonas phenolica 1171 species 1 0 1467 species 1 0 314281 Pseudoalteromonas tunicata Pseudoalteromonas espejiana 28107 1 1026 species 0 298657 Pseudoalteromonas spongiae 1455 species 1 0 194690 0 5 no rank 6828 species 1100 1 0 1761891 Pseudoalteromonas sp. 13-15 0 species 2168 1 1514074 Pseudoalteromonas sp. NC201 0 1 1081 species Pseudoalteromonas sp. SM9913 234831 1 species 1315 0 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1720343 0 1 1164 species Pseudoalteromonas sp. Bsw20308 283699 Pseudoalteromonas arctica 394751 1 species 1246 0 1 species 1029 0 Pseudoalteromonas translucida 166935 267375 Pseudoalteromonas marina 0 967 species 1 species 964 1 0 43659 Pseudoalteromonas tetraodonis 0 species 1135 1 28109 Pseudoalteromonas nigrifaciens Pseudoalteromonas piscicida 43662 1 species 751 0 0 species 1039 1 228 Pseudoalteromonas haloplanktis species 1223 1 0 247523 Pseudoalteromonas aliena 152297 Pseudoalteromonas issachenkonii 983 species 1 0 176102 Pseudoalteromonas agarivorans 975 species 1 0 1 1872 species 0 Pseudoalteromonas atlantica 288 0 species 1185 1 43657 Pseudoalteromonas luteoviolacea 1240482 5 3740 order 0 0 17 1 5 family 3740 Orbaceae 1240483 Gilliamella 1193503 2 genus 2074 13 1 0 0 species 2061 1 1196095 Gilliamella apicola 1 11 1649 genus 2 0 1335631 Frischella 1267021 Frischella perrara 0 1638 species 1 0 988 no rank 2 33811 gamma proteobacterium HdN1 83406 0 1 species 543 1248727 endosymbiont of unidentified scaly snail isolate Monju 445 species 1 0 1706369 Cellvibrionales 1 61 order 12579 30 0 1706373 Microbulbiferaceae 0 1 8 family 2107 5 Microbulbifer 48073 0 4 genus 2099 37 1 260552 Microbulbifer agarilyticus 0 656 species 1 1 736 species 0 Microbulbifer aggregans 1769779 0 species 670 1 252514 Microbulbifer thermotolerans Spongiibacteraceae 1706375 0 7 2790 family 35 1 0 2 genus 627 1 11 Spongiibacter 630749 1 616 no rank 0 2631504 1620392 Spongiibacter sp. IMCC21906 species 616 1 0 Zhongshania 1434050 11 1 2 genus 857 0 Zhongshania aliphaticivorans 1470434 1 species 846 0 Oceanicoccus 1084558 2 1271 genus 6 1 0 0 1 1265 species Oceanicoccus sagamiensis 716816 Cellvibrionaceae 1706371 0 13 5690 family 48 1 0 6 1 2 genus 1626 Agarilytica 2036021 1 species 1620 0 Agarilytica rhodophyticola 1737490 Saccharophagus 316625 0 2 943 genus 3 1 940 species 1 0 86304 Saccharophagus degradans Cellvibrio 10 4 genus 1857 12 1 0 Cellvibrio japonicus 155077 1 578 species 0 0 2 no rank 1267 2624793 species 648 1 0 1987723 Cellvibrio sp. PSBB006 0 619 species 1 1945512 Cellvibrio sp. PSBB023 0 genus 711 2 3 1 2425 Teredinibacter 2426 Teredinibacter turnerae 708 species 1 0 0 3 1 505 genus 2 447467 Simiduia 0 1 species 502 Simiduia agarivorans 447471 9 1 1931 family 4 0 1706372 Halieaceae 0 3 1922 genus 23 1 Halioglobus 1217416 1088 species 1 0 930805 Halioglobus japonicus 1 species 811 0 Halioglobus pacificus 930806 469 1 class 678353 569 0 28211 Alphaproteobacteria 0 2785 order 6 2800060 family 2785 6 59 1 0 69657 Hyphomonadaceae Hirschia 2723 27 1 2 1701 genus 0 0 1 1674 species Hirschia baltica 2724 1 42 3 1025 genus 0 Hyphomonas 85 Hyphomonas neptunium 81032 1 392 species 0 1 no rank 591 0 2630699 0 1 591 species Hyphomonas sp. Mor2 1906738 766 Rickettsiales 0 44 1 55604 order 56 1328881 Candidatus Midichloriaceae 0 1 3 family 1626 3 411566 Candidatus Midichloria 1 25 1623 genus 2 0 234827 Candidatus Midichloria mitochondrii 0 species 1598 1 family 27187 23 1 28 0 942 Anaplasmataceae 0 1167 genus 4 1 24 768 Anaplasma 1 293 species 0 Anaplasma centrale 769 1 species group 539 0 106179 Anaplasma phagocytophilum 948 0 1 species 539 species 311 1 0 770 Anaplasma marginale 33993 Neorickettsia 0 genus 1814 4 1 19 species 576 1 0 951 Neorickettsia sennetsu 0 1 624 species Neorickettsia helminthoeca 33994 595 species 1 0 950 Neorickettsia risticii 8 12307 tribe 0 952 Wolbachia 953 0 225 1 8 12307 genus 0 7 no rank 12082 2640676 species 1537 1 0 163164 Wolbachia endosymbiont of Drosophila melanogaster 1 species 3308 0 Wolbachia endosymbiont of Drosophila simulans 77038 100901 Wolbachia endosymbiont of Onchocerca ochengi 0 1504 species 1 0 1 1310 species Wolbachia endosymbiont of Brugia malayi 80849 0 1336 species 1 246273 Wolbachia endosymbiont of Cimex lectularius 1499 species 1 0 77551 Wolbachia endosymbiont of Onchocerca volvulus 1 1588 species 0 Wolbachia sp. wRi 66084 943 Ehrlichia 0 genus 11871 6 55 1 no rank 2228 1 0 106181 391036 Ehrlichia sp. HF species 2228 1 0 106178 0 9588 species group 4 0 species 2631 1 944 Ehrlichia canis 0 1 species 2049 Ehrlichia muris 35795 945 Ehrlichia chaffeensis 0 2242 species 1 Ehrlichia ruminantium 779 0 1 2666 species 775 Rickettsiaceae 0 22795 family 28 34 1 0 tribe 21210 25 33988 780 Rickettsia 18094 genus 23 1 1537 0 0 1 no rank 1973 114295 337479 Rickettsia endosymbiont of Bemisia tabaci species 1973 1 0 1129742 0 2 species group 3636 1 2196 species 0 Rickettsia bellii 33990 Rickettsia canadensis 788 0 1 species 1440 2 4221 species group 0 114292 785 Rickettsia typhi 0 2101 species 1 0 2120 species 1 782 Rickettsia prowazekii 0 17 species group 6727 114277 Rickettsia rickettsii 783 1 species 179 0 1 195 species 0 Rickettsia montanensis 33991 35790 Rickettsia japonica 153 species 1 0 Rickettsia akari 786 0 1 834 species 35791 Rickettsia massiliae 234 species 1 0 1 species 145 0 Rickettsia conorii 781 0 180 species 1 226665 Rickettsia heilongjiangensis Rickettsia africae 35788 0 1 species 113 0 1 134 species Rickettsia philipii 1105106 1 1215 species 0 Rickettsia australis 787 Rickettsia peacockii 47589 0 1 612 species Rickettsia amblyommatis 33989 0 1 species 323 0 792 species 1 109232 Rickettsia monacensis 0 species 145 1 35792 Rickettsia parkeri 42862 Rickettsia felis 0 1086 species 1 Rickettsia slovaca 35794 0 1 species 77 Rickettsia rhipicephali 33992 0 1 310 species 0 1 2 2 3116 genus Orientia 69474 784 Orientia tsutsugamushi 0 3114 species 1 4 1 2 genus 1551 0 Candidatus Phycorickettsia 2115980 2115978 Candidatus Phycorickettsia trachydisci species 1547 1 0 1699067 no rank 3952 1 0 Rickettsiales bacterium Ac37b 1528098 0 1 3952 species Rhodospirillales 204441 0 65 order 27345 1 151 0 228 1 31 family 16776 Rhodospirillaceae 41295 Rhodospirillum 1081 0 19 1 3 genus 1217 Rhodospirillum rubrum 1085 0 1 species 517 0 681 species 1 34018 Rhodospirillum centenum 7 1 2 genus 698 0 Nitrospirillum 1543705 28077 Nitrospirillum amazonense 0 species 691 1 0 415 genus 2 1 2 1612157 Pararhodospirillum Pararhodospirillum photometricum 1084 1 species 413 0 0 5 2773 genus 1 134 Magnetospirillum 13134 Magnetospirillum magneticum 84159 1 species 544 0 0 1 773 species Magnetospirillum gryphiswaldense 55518 2617991 no rank 1322 2 0 1 710 species 0 Magnetospirillum sp. ME-1 1639348 1 612 species 0 Magnetospirillum sp. XM-1 1663591 0 1 7 2 631 genus Haematospirillum 1804663 1549855 Haematospirillum jordaniae 0 species 624 1 2 genus 613 14 1 0 Magnetospira 1182780 2685734 1 no rank 599 0 1288970 Magnetospira sp. QH-2 599 species 1 0 1263978 Candidatus Endolissoclinum genus 3260 2 2 1 0 3258 species 1 0 1263979 Candidatus Endolissoclinum faulkneri Thalassospira 168934 3 1832 genus 32 1 0 220697 Thalassospira xiamenensis 0 species 944 1 Thalassospira sp. CSC3H3 2048283 0 1 856 species 1 6 2 genus 493 0 Niveispirillum 1543704 1612173 Niveispirillum cyanobacteriorum 0 species 487 1 Azospirillum 191 110 1 5 genus 3766 0 Azospirillum humicireducens 1226968 1 species 412 0 1 1110 species 0 Azospirillum brasilense 192 0 1 845 species Azospirillum thiophilum 528244 Azospirillum lipoferum 193 0 1 1289 species 2 850 genus 13 1 0 Tistrella 171436 Tistrella mobilis 171437 0 1 species 837 Acetobacteraceae 433 0 84 1 33 family 10418 2 658 genus 8 1 0 Granulibacter 364409 650 species 1 0 364410 Granulibacter bethesdensis 0 2 365 genus 1 1 Gluconacetobacter 89583 33996 Gluconacetobacter diazotrophicus species 364 1 0 8 4087 genus 50 1 0 Acetobacter 434 0 species 384 1 65959 Acetobacter pomorum species 1646 1 0 438 Acetobacter pasteurianus 0 444 species 1 1633874 Acetobacter oryzifermentans Acetobacter senegalensis 446692 1 386 species 0 1 species 528 0 Acetobacter tropicalis 104102 1 302 subgenus 0 151157 435 Acetobacter aceti 0 302 species 1 species 347 1 0 1076596 Acetobacter persici Gluconobacter 441 3 genus 720 5 1 0 Gluconobacter oxydans 442 1 474 species 0 Gluconobacter albidus 318683 0 1 241 species 32 1 3 genus 963 0 Acidiphilium 522 1 426 species 0 Acidiphilium cryptum 524 1 species 505 0 Acidiphilium multivorum 62140 1434011 Komagataeibacter 1 17 genus 1413 5 0 0 1 315 species Komagataeibacter medellinensis 1177712 1 383 species 0 Komagataeibacter nataicola 265960 1 490 species 0 Komagataeibacter xylinus 28448 208 species 1 0 33995 Komagataeibacter europaeus 0 1 genus 216 1602345 0 216 species 1 1510841 Parasaccharibacter apium Roseomonas 125216 15 1 3 1080 genus 0 516 species 1 0 257708 Roseomonas gilardii 2617492 no rank 549 1 0 2018065 Roseomonas sp. FDAARGOS_362 549 species 1 0 1 1 2 genus 311 0 Asaia 91914 Asaia bogorensis 91915 0 1 310 species genus 333 1 0 153497 species 333 1 0 153496 Kozakia baliensis 2 188 genus 1 4 0 Neoasaia 320496 320497 Neoasaia chiangmaiensis 0 184 species 1 692 order 2 0 2800059 2800061 2 family 692 0 74317 Maricaulis 19 1 genus 692 2 0 0 673 species 1 74318 Maricaulis maris 0 8 no rank 6014 82117 1632780 Phreatobacter 0 15 1 612 genus 2 597 species 1 0 1868589 Phreatobacter sp. S-12 62654 2 4206 clade 0 4206 genus 2 35 1 0 767891 Candidatus Puniceispirillum Candidatus Puniceispirillum marinum 767892 0 1 4171 species 991903 Polymorphum genus 588 2 26 1 0 0 species 562 1 991904 Polymorphum gilvum Micavibrio 213485 5 1 2 608 genus 0 349221 Micavibrio aeruginosavorus 0 species 603 1 530 1 110018 order 212 0 356 Rhizobiales 45404 Beijerinckiaceae 894 family 5 1 6 0 Beijerinckia 532 1 4 2 549 genus 0 533 Beijerinckia indica species 545 1 0 Methylocella 120652 2 genus 339 12 1 0 199596 Methylocella silvestris 327 species 1 0 6 1574 no rank 0 119042 1734920 Pseudorhodoplanes 0 453 genus 2 1 3 1 450 species 0 Pseudorhodoplanes sinuspersici 1235591 Methyloceanibacter 1484898 0 33 1 2 genus 559 1 species 526 0 Methyloceanibacter caenitepidi 1384459 0 1 16 562 genus 2 1572860 Hartmannibacter Hartmannibacter diazotrophicus 1482074 0 1 546 species 0 8 1 3594 family 20 118882 Brucellaceae 1 45 5 2215 genus 0 Ochrobactrum 528 Ochrobactrum pseudogrignonense 419475 0 1 503 species 0 1 558 species Ochrobactrum sp. A44 271865 Ochrobactrum pituitosum 571256 1 725 species 0 529 Ochrobactrum anthropi species 384 1 0 0 450 1 14 genus 1371 Brucella 234 Brucella pinnipedialis 120576 0 1 species 77 0 1 species 41 Brucella melitensis 29459 36855 Brucella canis 72 species 1 0 Brucella suis 29461 0 1 species 116 235 Brucella abortus species 54 1 0 species 93 1 0 981386 Brucella vulpis 2632610 4 no rank 346 0 1149952 Brucella sp. 09RB8471 0 102 species 1 0 1 species 133 Brucella sp. 09RB8910 1844051 0 species 82 1 1885919 Brucella sp. 141012304 1891098 Brucella sp. 2002734562 species 29 1 0 0 72 species 1 120577 Brucella ceti 14 species 1 0 236 Brucella ovis species 36 1 0 444163 Brucella microti 119045 Methylobacteriaceae 8093 family 15 1 30 0 Microvirga 186650 0 2 genus 479 12 1 1 species 467 0 Microvirga ossetica 1882682 163 1 9 genus 4199 0 Methylobacterium 407 270351 Methylobacterium aquaticum 0 species 699 1 Methylobacterium oryzae 334852 0 1 383 species 377 species 1 0 418223 Methylobacterium phyllosphaerae 31998 Methylobacterium radiotolerans 443 species 1 0 2615210 0 3 1432 no rank species 364 1 0 925818 Methylobacterium sp. AMS5 0 402 species 1 1479019 Methylobacterium sp. C1 1 666 species 0 Methylobacterium sp. 4-46 426117 0 species 702 1 114616 Methylobacterium nodulans 0 3385 genus 3 2282523 0 species 355 1 29429 Methylobacterium zatmanii Methylobacterium extorquens 408 1 2325 species 0 0 species 705 1 223967 Methylobacterium populi Xanthobacteraceae 335928 22 1 7 family 1532 0 1 13 2 genus 484 0 Starkeya 152053 Starkeya novella 921 1 species 471 0 0 genus 636 2 17 1 279 Xanthobacter 1 species 619 0 Xanthobacter autotrophicus 280 6 Azorhizobium 0 1 17 390 genus 2 1 species 373 0 Azorhizobium caulinodans 7 0 3 772 family 8 1 Rhodobiaceae 119043 0 2 764 genus 22 1 Parvibaculum 256616 species 742 1 0 256618 Parvibaculum lavamentivorans 45401 Hyphomicrobiaceae 0 1 63 5583 family 19 553 genus 2 14 1 0 29407 Rhodoplanes 2619116 0 1 no rank 539 species 539 1 0 674703 Rhodoplanes sp. Z2-YC6860 genus 467 2 1 9 0 119044 Filomicrobium Candidatus Filomicrobium marinum 1608628 1 species 458 0 0 1 4 genus 487 2 59282 Blastochloris 1079 Blastochloris viridis species 483 1 0 Hyphomicrobium 81 0 1 88 4 genus 1565 2619925 1 no rank 651 0 717785 Hyphomicrobium sp. MC1 species 651 1 0 0 species 346 1 1427356 Hyphomicrobium nitrativorans Hyphomicrobium denitrificans 53399 1 480 species 0 1082930 Pelagibacterium 0 13 1 382 genus 2 0 1 369 species Pelagibacterium halotolerans 531813 1068 Rhodomicrobium 407 genus 2 1 6 0 0 1 species 401 Rhodomicrobium vannielii 1069 0 68 1 1659 genus 4 46913 Devosia 0 no rank 1591 3 196773 668 species 1 0 1736675 Devosia sp. A16 0 522 species 1 1643450 Devosia sp. H5989 species 401 1 0 2083786 Devosia sp. I507 69277 Phyllobacteriaceae 1 58 7374 family 20 0 Nitratireductor 245876 8 1 2 genus 549 0 1 species 541 0 Nitratireductor basaltis 472175 28100 Phyllobacterium 0 1 10 490 genus 2 1867719 Phyllobacterium zundukense 0 species 480 1 274591 Hoeflea 0 1 10 593 genus 2 2614931 0 1 583 no rank 0 1 species 583 Hoeflea sp. IMCC20628 1620421 Mesorhizobium 68287 0 183 1 9 4808 genus 0 1 species 621 Mesorhizobium sp. B7 1670800 Mesorhizobium australicum 536018 0 1 490 species Mesorhizobium loti 381 1 species 552 0 1 668 no rank 0 325217 species 668 1 0 278153 Mesorhizobium sp. WSM1497 749 species 1 0 39645 Mesorhizobium ciceri 0 525 species 1 2066070 Mesorhizobium japonicum 1 species 493 0 Mesorhizobium amorphae 71433 Mesorhizobium opportunistum 593909 0 1 527 species Chelativorans 449972 21 1 2 genus 356 0 2643807 0 1 no rank 335 0 335 species 1 266779 Chelativorans sp. BNC1 2 genus 520 1 9 0 Aminobacter 31988 0 species 511 1 83263 Aminobacter aminovorans 5 1 1867 family 7 0 255475 Aurantimonadaceae 0 2 450 genus 1 9 Aureimonas 414371 2615206 1 441 no rank 0 0 species 441 1 1349819 Aureimonas sp. AU20 Martelella 293088 4 genus 1412 46 1 0 1486262 Martelella endophytica 0 species 337 1 1 476 no rank 0 2629616 686597 Martelella sp. AD-3 0 species 476 1 0 1 species 553 Martelella mediterranea 293089 41294 Bradyrhizobiaceae 0 1 67 family 12915 26 genus 2902 2 28 1 0 1073 Rhodopseudomonas Rhodopseudomonas palustris 1076 1 species 2874 0 6290 genus 11 212 1 0 374 Bradyrhizobium Bradyrhizobium icense 1274631 1 species 460 0 375 Bradyrhizobium japonicum 0 species 808 1 0 611 species 1 44255 Bradyrhizobium oligotrophicum 2631580 3308 no rank 6 0 1223566 Bradyrhizobium sp. CCGE-LA001 species 427 1 0 Bradyrhizobium sp. 376 1 625 species 0 species 583 1 0 2057741 Bradyrhizobium sp. SK17 114615 Bradyrhizobium sp. ORS 278 0 species 616 1 1 526 species 0 Bradyrhizobium sp. BTAi1 288000 0 1 species 531 Bradyrhizobium sp. ORS 285 115808 0 1 891 species Bradyrhizobium diazoefficiens 1355477 Variibacter 1649510 1 10 2 401 genus 0 species 391 1 0 1333996 Variibacter gotjawalensis Bosea 85413 59 1 5 2124 genus 0 Bosea vaviloviae 1526658 0 1 species 567 0 3 1498 no rank 2653178 0 626 species 1 2015316 Bosea sp. AS-1 1792307 Bosea sp. PAMC 26642 346 species 1 0 Bosea sp. RAC05 1842539 1 526 species 0 0 410 genus 2 1 6 40136 Oligotropha 0 1 404 species Oligotropha carboxidovorans 40137 911 Nitrobacter 0 13 1 721 genus 3 0 1 326 species Nitrobacter winogradskyi 913 382 species 1 0 912 Nitrobacter hamburgensis 0 172 1 family 28334 55 82115 Rhizobiaceae 227290 36 no rank 13889 0 1 607 27 genus 9702 0 Rhizobium 379 Rhizobium phaseoli 396 0 1 849 species 2613769 0 4025 no rank 21 2020312 Rhizobium sp. CIAT894 306 species 1 0 4 species 1 0 1703967 Rhizobium sp. N741 0 6 species 1 1703962 Rhizobium sp. N1341 0 1 species 305 Rhizobium sp. NT-26 1125847 0 1 334 species Rhizobium sp. N324 1703969 2020313 Rhizobium sp. TAL182 0 93 species 1 0 species 337 1 1301032 Rhizobium sp. IE4771 1571470 Rhizobium sp. ACO-34A species 320 1 0 0 349 species 1 2020311 Rhizobium sp. Kim5 1703960 Rhizobium sp. N113 6 species 1 0 1869170 Rhizobium sp. S41 0 316 species 1 0 species 316 1 424182 Rhizobium sp. IRBG74 0 1 species 257 Rhizobium sp. NXC14 1981173 0 344 species 1 2048897 Rhizobium sp. NXC24 2028343 Rhizobium sp. 10195 0 species 346 1 species 2 1 0 1703965 Rhizobium sp. N6212 Rhizobium sp. N621 1703964 1 species 2 0 1 species 64 0 Rhizobium sp. N1314 1703961 0 species 250 1 1914541 Rhizobium sp. Y9 Rhizobium sp. N731 1703966 0 1 64 species Rhizobium sp. N871 1703968 1 4 species 0 Rhizobium etli 29449 0 1 species 1180 1 285 species 0 Rhizobium tropici 398 Rhizobium gallicum 56730 1 species 565 0 Rhizobium leguminosarum 384 0 1 2191 species 357 Agrobacterium 0 69 1 genus 3619 7 359 Agrobacterium rhizogenes species 300 1 0 0 455 species 1 373 Agrobacterium vitis 2632611 0 2 no rank 743 1 284 species 0 Agrobacterium sp. H13-3 861208 1842536 Agrobacterium sp. RAC06 0 459 species 1 1183400 2 2052 species group 0 0 1 294 species Agrobacterium fabrum 1176649 Agrobacterium tumefaciens 358 1 1758 species 0 Neorhizobium 1525371 0 4 1 2 genus 568 1 564 species 0 Neorhizobium galegae 399 0 598 genus 2 3 1 323620 Shinella 2643062 1 595 no rank 0 595 species 1 0 879274 Shinella sp. HZN7 0 10 4883 no rank 227292 Ensifer 106591 3 genus 895 13 1 0 Ensifer adhaerens 106592 1 509 species 0 0 1 species 373 Ensifer sojae 716925 28105 Sinorhizobium 1 95 genus 3988 7 0 0 1 species 1095 Sinorhizobium meliloti 382 2613772 2 no rank 912 0 515 species 1 0 1842534 Sinorhizobium sp. RAC02 794846 Sinorhizobium sp. CCBAU 05631 0 397 species 1 663276 0 1 1066 species group Sinorhizobium fredii 380 0 1 1066 species 398 species 1 0 194963 Sinorhizobium americanum 1 422 species 0 Sinorhizobium medicae 110321 0 6 8792 genus 182 1 Liberibacter 34019 0 species 2106 1 1273132 Liberibacter crescens 0 1 species 1410 Candidatus Liberibacter asiaticus 34021 1 species 1539 0 Candidatus Liberibacter solanacearum 556287 Candidatus Liberibacter africanus 34020 1 species 1470 0 1 species 2085 0 Candidatus Liberibacter americanus 309868 26 1 34622 family 18 0 772 Bartonellaceae 17 34596 genus 1 726 0 Bartonella 773 388640 Bartonella australis 0 species 1150 1 1318743 Bartonella ancashensis species 2057 1 0 Bartonella apis 1686310 0 1 1718 species 1 2277 species 0 Bartonella clarridgeiae 56426 85701 Bartonella tribocorum species 2070 1 0 Bartonella grahamii 33045 0 1 species 1943 2310 species 1 0 774 Bartonella bacilliformis 0 1741 species 1 803 Bartonella quintana 1834 species 1 0 33047 Bartonella vinsonii 2645622 6 no rank 14838 0 Bartonella sp. JB63 1933907 0 1 2503 species 1 2503 species 0 Bartonella sp. JB15 1933906 Bartonella sp. Raccoon60 1933912 1 species 2518 0 1933910 Bartonella sp. A1379B 0 2538 species 1 1 species 2346 0 Bartonella sp. 1-1C 515256 species 2430 1 0 1933904 Bartonella sp. WD16.2 1 species 1932 0 Bartonella henselae 38323 Chelatococcaceae 2036754 0 4 1093 family 4 1 0 38 1 1089 genus 3 28209 Chelatococcus 444444 Chelatococcus daeguensis 477 species 1 0 0 1 no rank 574 2638111 1 574 species 0 Chelatococcus sp. CO-6 1702325 31993 Methylocystaceae 1241 family 6 1 14 0 0 6 1 2 genus 482 Methylosinus 425 Methylosinus trichosporium 426 1 species 476 0 133 Methylocystis 0 genus 745 3 36 1 655015 Methylocystis bryophila species 382 1 0 2625913 327 no rank 1 0 Methylocystis sp. SC2 187303 0 1 species 327 0 10 1 order 4703 9 1921002 Holosporales 0 12 1 family 1236 3 1777752 Candidatus Paracaedibacteraceae 1 10 1224 genus 2 0 1521255 Candidatus Paracaedibacter Candidatus Paracaedibacter acanthamoebae 91604 1 species 1214 0 1 7 family 1733 3 0 2100208 Caedimonadaceae 1509243 Candidatus Nucleicultrix 1 12 1726 genus 2 0 1 species 1714 0 Candidatus Nucleicultrix amoebiphila 1509244 0 1 8 family 1724 2 44746 Holosporaceae 204454 1716 no rank 1 0 endosymbiont of Acanthamoeba sp. UWC8 86106 1 1716 species 0 1 47 order 5872 20 0 204458 Caulobacterales 76892 Caulobacteraceae 0 5825 family 19 104 1 81440 0 382 no rank 1 1759059 Caulobacteraceae bacterium OTSz_A_272 0 species 382 1 0 19 1 2 genus 449 Asticcacaulis 76890 Asticcacaulis excentricus 78587 0 1 species 430 Phenylobacterium 20 0 5 1 2 451 genus species 446 1 0 284016 Phenylobacterium zucineum 41275 Brevundimonas 1 117 genus 2055 7 0 Brevundimonas vesicularis 41276 0 1 species 224 Brevundimonas subvibrioides 74313 1 species 441 0 588932 Brevundimonas naejangsanensis species 290 1 0 3 983 no rank 0 2622653 1938605 Brevundimonas sp. LM2 0 496 species 1 Brevundimonas sp. DS20 1532555 0 1 258 species Brevundimonas sp. GW460-12-10-14-LB2 1827469 1 229 species 0 0 45 1 6 2384 genus Caulobacter 75 1 413 species 0 Caulobacter mirabilis 69666 Caulobacter vibrioides 155892 0 1 species 684 Caulobacter segnis 88688 0 1 386 species 69395 Caulobacter henricii species 410 1 0 2648921 0 446 no rank 1 446 species 1 0 366602 Caulobacter sp. K31 Sphingomonadales 204457 0 161 1 81 28119 order 0 21116 family 58 1 214 41297 Sphingomonadaceae 0 genus 4266 10 86 1 165697 Sphingopyxis 1 369 species 0 Sphingopyxis granuli 267128 286 species 1 0 1515612 Sphingopyxis fribergensis Sphingopyxis terrae 33052 0 1 species 297 species 302 1 0 117207 Sphingopyxis alaskensis 1 609 species 0 Sphingopyxis macrogoltabida 33050 2614943 4 no rank 2317 0 Sphingopyxis sp. MG 1866325 0 1 species 399 0 species 384 1 1357916 Sphingopyxis sp. QXT-31 0 1 1215 species Sphingopyxis sp. LPB0140 1913578 0 1 319 species Sphingopyxis sp. 113P3 292913 genus 945 3 18 1 0 1434046 Sphingorhabdus 2 no rank 927 0 2614947 1 460 species 0 Sphingorhabdus sp. YGSMI21 2077182 species 467 1 0 1806885 Sphingorhabdus sp. M41 1 467 genus 0 2709685 1 species 467 0 Sphingorhabdus flavimaris 266812 15 genus 6259 1 164 0 Sphingomonas 13687 1 species 396 0 Sphingomonas hengshuiensis 1609977 1 333 species 0 Sphingomonas koreensis 93064 360 species 1 0 1549858 Sphingomonas taxi 1 species 378 0 Sphingomonas panacis 1560345 Sphingomonas wittichii 160791 643 1 2 species 1253 0 1 strain 610 0 Sphingomonas sp. DC-6 1283312 0 340 species 1 152682 Sphingomonas melonis 0 1 species 533 Sphingomonas sanxanigenens 397260 196159 0 6 2502 no rank 0 852 species 1 1390395 Sphingomonas sp. LK11 0 1 species 322 Sphingomonas sp. LM7 1938607 745310 Sphingomonas sp. MM-1 0 332 species 1 1327635 Sphingomonas sp. Cra20 species 331 1 0 1961362 Sphingomonas sp. NIC1 0 318 species 1 Sphingomonas sp. KC8 1030157 1 species 347 0 165696 Novosphingobium genus 1455 5 1 51 0 1 no rank 314 0 2644732 702113 Novosphingobium sp. PP1Y species 314 1 0 0 479 species 1 158500 Novosphingobium resinovorum 48935 Novosphingobium aromaticivorans 265 species 1 0 0 346 species 1 205844 Novosphingobium pentaromativorans 0 1 genus 1501 541 0 1501 species 1 542 Zymomonas mobilis 165695 Sphingobium 4439 genus 15 1 192 0 1 species 272 0 Sphingobium indicum 332055 2611147 1771 no rank 6 0 278 species 1 0 1843368 Sphingobium sp. RAC03 407020 Sphingobium sp. MI1205 287 species 1 0 0 species 364 1 627192 Sphingobium sp. SYK-6 0 1 239 species Sphingobium sp. EP60837 1855519 Sphingobium sp. TKS 1315974 1 species 310 0 0 293 species 1 484429 Sphingobium sp. YBL2 Sphingobium japonicum 332056 1 355 species 0 1 species 609 0 Sphingobium yanoikuyae 13690 0 245 species 1 1332080 Sphingobium baderi 1 species 281 0 Sphingobium cloacae 120107 1673076 Sphingobium hydrophobicum 0 218 species 1 0 species 240 1 46429 Sphingobium chlorophenolicum Sphingobium herbicidovorans 76947 1 256 species 0 326 genus 2 3 1 0 72173 Citromicrobium 2630544 0 no rank 323 1 Citromicrobium sp. JL477 1634516 0 1 species 323 0 1 2 2 genus 411 Rhizorhabdus 1649486 1850238 Rhizorhabdus dicambivorans species 409 1 0 2685927 0 402 genus 1 1 species 402 0 Sphingomonas sp. JJ-A5 1921510 Blastomonas 150203 0 2 genus 431 8 1 2626550 0 1 423 no rank species 423 1 0 1842535 Blastomonas sp. RAC04 0 family 6842 22 1 71 335929 Erythrobacteraceae 2800686 0 2 genus 479 1982042 Altererythrobacter mangrovi species 237 1 0 species 242 1 0 692370 Altererythrobacter dongtanensis 1855416 0 2 genus 560 Erythrobacter flavus 192812 1 species 363 0 0 1 197 species Erythrobacter seohaensis 266951 0 246 genus 1 2800685 543877 Altererythrobacter marensis 246 species 1 0 2800681 0 2 1429 genus 1 750 species 0 Erythrobacter atlanticus 1648404 502682 Erythrobacter gangjinensis 679 species 1 0 361177 Altererythrobacter 0 119 1 genus 899 4 209 species 1 0 1267766 Altererythrobacter atlanticus 1 306 species 0 Altererythrobacter ishigakiensis 476157 Altererythrobacter epoxidivorans 361183 1 species 265 0 2045 no rank 6 0 2800788 0 3 1155 genus 1 134 Erythrobacter 1041 Porphyrobacter neustonensis 1112 0 1 species 340 1 species 681 0 Erythrobacter litoralis 39960 Porphyrobacter 1111 3 genus 890 59 1 0 2683265 2 831 no rank 0 400 species 1 0 2023229 Porphyrobacter HT-58-2 species 431 1 0 1896196 Porphyrobacter sp. LM 6 2800682 0 genus 512 1 0 1 512 species Altererythrobacter namhicola 645517 1295327 Croceicoccus 601 genus 3 1 21 0 450378 Croceicoccus marinus 377 species 1 0 Croceicoccus naphthovorans 1348774 0 1 203 species 255473 Parvularculales 787 order 4 1 6 0 3 family 781 19 1 0 Parvularculaceae 255474 1 28 2 762 genus 0 Parvularcula 208215 208216 Parvularcula bermudensis 0 species 734 1 54526 Pelagibacterales 0 58 1 order 400198 9 0 25434 genus 2 53 1 2045213 Candidatus Fonsibacter 1925548 Candidatus Fonsibacter ubiquis 0 species 25381 1 1 140 6 family 374706 0 Pelagibacteraceae 1655514 198251 Candidatus Pelagibacter 0 164007 genus 3 51 1 Candidatus Pelagibacter ubique 198252 1 species 141319 0 2647897 22637 no rank 1 0 1 22637 species 0 Candidatus Pelagibacter sp. IMCC9063 1002672 2 no rank 210559 0 1655516 alpha proteobacterium HIMB59 744985 1 24269 species 0 species 186290 1 0 859653 alpha proteobacterium HIMB5 204455 Rhodobacterales 0 1 135 order 35208 92 31989 Rhodobacteraceae 1 564 35073 family 91 0 Loktanella 245186 0 1 genus 7 0 25 1 genus 2465 5 1060 Rhodobacter Rhodobacter sphaeroides 1063 0 1 1087 species 196779 0 no rank 963 2 Rhodobacter sp. LPB0142 1850250 0 1 500 species 1 463 species 0 Rhodobacter sp. CZR27 2033869 1 species 390 0 Rhodobacter capsulatus 1061 74030 genus 478 1 0 Roseovarius mucosus 215743 1 species 478 0 3409 genus 9 58 1 0 265 Paracoccus 0 1 297 species Paracoccus contaminans 1945662 1077935 Paracoccus zhejiangensis 0 382 species 1 443 species 1 0 2065379 Paracoccus sp. CBA4604 34003 Paracoccus aminophilus 368 species 1 0 Paracoccus denitrificans 266 0 1 species 435 Paracoccus yeei 147645 1 546 species 0 0 463 no rank 1 246570 Paracoccus sp. BM15 1529068 0 1 species 463 34004 Paracoccus aminovorans 0 417 species 1 0 1 5 3 1022 genus Ruegeria 97050 89184 Ruegeria pomeroyi species 572 1 0 445 no rank 1 0 2625375 Ruegeria sp. TM1040 292414 1 445 species 0 Pannonibacter 227873 7 1 2 533 genus 0 Pannonibacter phragmitetus 121719 0 1 526 species Pelagibaca 360528 10 1 2 571 genus 0 1250539 Pelagibaca abyssi species 561 1 0 0 no rank 817 2 58840 Rhodobacteraceae bacterium 1904441 0 1 species 431 Rhodobacteraceae bacterium QY30 2033435 1 386 species 0 genus 1101 3 1 4 0 60136 Sulfitobacter 196795 1 no rank 547 0 1917485 Sulfitobacter sp. AM1-D1 0 species 547 1 0 1 species 550 Sulfitobacter pseudonitzschiae 1402135 1649279 0 1 772 genus 772 species 1 0 379347 Ruegeria mobilis 34008 Rhodovulum 0 1716 genus 4 26 1 Rhodovulum sulfidophilum 35806 1 741 species 0 2631432 2 no rank 949 0 1 509 species 0 Rhodovulum sp. MB263 308754 Rhodovulum sp. P5 1564506 0 1 species 440 285107 Thioclava 0 1 1 genus 382 2 1915078 Thioclava nitratireducens 0 381 species 1 Leisingera 191028 2 1 2 476 genus 0 133924 Leisingera methylohalidivorans 474 species 1 0 1 20 genus 1241 3 0 2433 Roseobacter 0 1 576 species Roseobacter denitrificans 2434 Roseobacter litoralis 42443 1 645 species 0 Defluviimonas 1097466 6 1 2 genus 537 0 531 species 1 0 1335048 Defluviimonas alba Marinovum 367771 0 2 543 genus 4 1 species 539 1 0 42444 Marinovum algicola 0 genus 544 2 1 1 1609958 Confluentimicrobium 2643318 0 1 543 no rank 1609966 Confluentimicrobium sp. EMB200-NS6 0 543 species 1 Rhodobaca 119541 0 2 526 genus 8 1 species 518 1 0 441209 Rhodobaca barguzinensis 4 1 2 456 genus 0 Marivivens 1759396 0 452 no rank 1 2622455 1920883 Marivivens sp. JLT3646 452 species 1 0 58842 genus 521 1 0 no rank 521 1 0 2624628 Sagittula sp. P11 2009329 0 1 521 species Labrenzia 478070 0 1 73 4 1731 genus 187304 Labrenzia aggregata 0 species 572 1 2648686 0 2 no rank 1086 Labrenzia sp. VG12 2021862 0 1 species 572 1674922 Labrenzia sp. CP4 0 species 514 1 0 genus 1942 4 39 1 53945 Octadecabacter Octadecabacter temperatus 1458307 0 1 577 species Octadecabacter arcticus 53946 0 1 525 species 1217908 Octadecabacter antarcticus 801 species 1 0 1284657 Planktomarina genus 1070 2 1 1 0 Planktomarina temperata 1284658 1 species 1069 0 92944 Ketogulonicigenium genus 788 3 7 1 0 Ketogulonicigenium robustum 92947 1 species 367 0 species 414 1 0 92945 Ketogulonicigenium vulgare 309512 Dinoroseobacter 0 1 11 432 genus 2 215813 Dinoroseobacter shibae species 421 1 0 743 genus 2 1 1 0 1579315 Halocynthiibacter 0 1 species 742 Halocynthiibacter arcticus 1579316 2 434 genus 4 1 0 Tateyamaria 299261 Tateyamaria omphalii 299262 1 430 species 0 875170 Celeribacter 0 genus 2476 5 33 1 0 1 738 species Celeribacter indicus 1208324 1 587 species 0 Celeribacter marinus 1397108 Celeribacter manganoxidans 1411902 0 1 species 687 species 431 1 0 1758178 Celeribacter ethanolicus 1 521 genus 0 2211641 Loktanella vestfoldensis 245188 1 521 species 0 302485 Phaeobacter 64 1 genus 3683 5 0 1 species 866 0 Phaeobacter gallaeciensis 60890 species 1447 1 0 221822 Phaeobacter inhibens Phaeobacter piscinae 1580596 1 species 927 0 0 1 379 species Phaeobacter porticola 1844006 0 2 1150 genus 263377 1229727 Thiobacimonas profunda 0 534 species 1 1 616 no rank 0 2640570 0 616 species 1 1792508 Yangia sp. CCB-MM3 0 genus 463 2 2 1 159345 Roseibacterium 159346 Roseibacterium elongatum 461 species 1 0 74032 Antarctobacter 0 9 1 491 genus 2 1 482 species 0 Antarctobacter heliothermus 74033 436357 Thalassococcus 2 genus 1 0 0 9 1 466 genus 2 188905 Jannaschia 1 457 no rank 0 2645469 290400 Jannaschia sp. CCS1 457 species 1 0 4 539 order 1 7 0 Magnetococcales 1191478 1 1 family 532 3 0 1191479 Magnetococcaceae 162171 Magnetococcus genus 531 2 5 1 0 1124597 Magnetococcus marinus 0 526 species 1 0 201 subphylum 134320 68525 127 46463 class 1 82 0 Deltaproteobacteria 28221 213113 Desulfurellales 1 7 2841 order 6 0 117942 Desulfurellaceae 0 2834 family 5 16 1 Hippea 84404 0 7 1 2 858 genus 0 1 species 851 Hippea maritima 84405 33001 Desulfurella 0 6 1 genus 1960 2 0 species 1954 1 33002 Desulfurella acetivorans 0 1 52 19 6709 order Desulfobacterales 213118 10 family 4736 1 23 0 Desulfobacteraceae 213119 0 7 1 genus 877 3 896 Desulfococcus species 400 1 0 897 Desulfococcus multivorans 181663 Desulfococcus oleovorans 470 species 1 0 0 2 1795 genus 13 1 Desulfatibacillum 218207 Desulfatibacillum alkenivorans 259354 0 1 1782 species 479 genus 2 8 1 0 2295 Desulfobacterium Desulfobacterium autotrophicum 2296 1 471 species 0 28222 Desulfobacula 0 genus 1562 2 1 3 0 1559 species 1 28223 Desulfobacula toluolica 213121 Desulfobulbaceae 17 1 1921 family 8 0 427922 0 1 genus 280 427923 Desulfurivibrio alkaliphilus 280 species 1 0 0 2 643 genus 1 20 Desulfotalea 109168 84980 Desulfotalea psychrophila 623 species 1 0 Desulfocapsa 53318 1 4 2 724 genus 0 720 species 1 0 65555 Desulfocapsa sulfexigens 3 1 2 genus 257 0 Desulfobulbus 893 0 1 254 species Desulfobulbus sp. ORNL 1986146 0 76 1 6502 order 24 69541 Desulfuromonadales 0 9 family 2319 1 20 Desulfuromonadaceae 213421 0 genus 1056 3 1 15 890 Desulfuromonas 2614637 0 452 no rank 1 Desulfuromonas sp. DDH964 1823759 1 species 452 0 1603606 Desulfuromonas soudanensis species 589 1 0 Pelobacter 18 16 1 5 1243 genus 0 0 1 species 277 Pelobacter carbinolicus 19 2620299 1 no rank 346 0 0 346 species 1 1842532 Pelobacter sp. SFB93 Pelobacter propionicus 29543 0 1 298 species Pelobacter acetylenicus 29542 1 species 306 0 0 20 1 family 4107 14 213422 Geobacteraceae 28231 Geobacter genus 3759 11 90 1 0 2627627 no rank 745 2 0 species 464 1 0 443143 Geobacter sp. M18 Geobacter sp. M21 443144 1 species 281 0 1340425 Geobacter anodireducens 0 species 251 1 0 species 470 1 28232 Geobacter metallireducens 279 species 1 0 345632 Geobacter pickeringii 0 1 781 species Geobacter uraniireducens 351604 Geobacter daltonii 1203471 1 species 307 0 35554 Geobacter sulfurreducens 0 species 257 1 Geobacter bemidjiensis 225194 0 1 285 species 313985 Geobacter lovleyi 294 species 1 0 0 2 genus 328 16 1 Geoalkalibacter 392332 0 species 312 1 483547 Geoalkalibacter subterraneus 4 1 4 order 383 0 Desulfarculales 453227 453228 Desulfarculaceae family 379 3 3 1 0 453229 Desulfarculus 1 2 376 genus 2 0 0 species 374 1 453230 Desulfarculus baarsii 213462 Syntrophobacterales 0 13 1 order 1373 10 0 family 280 2 213465 0 1 7 genus 280 2 29526 Syntrophobacter 273 species 1 0 119484 Syntrophobacter fumaroxidans Syntrophaceae 213468 0 12 1 7 1080 family 0 2 1 genus 412 2 2357 Desulfomonile Desulfomonile tiedjei 2358 0 1 species 410 2 370 genus 1 3 0 Syntrophus 43773 316277 Syntrophus aciditrophicus 367 species 1 0 Desulfobacca 60892 2 genus 286 2 1 0 species 284 1 0 60893 Desulfobacca acetoxidans 1 221 order 21742 37 0 29 Myxococcales 80812 7528 suborder 7 0 49 Polyangiaceae 0 19 1 6051 family 4 50 0 1 1237 genus 0 species 1237 1 52 Chondromyces crocatus 4795 genus 2 8 1 0 39643 Sorangium 0 species 4787 1 56 Sorangium cellulosum 1055686 Sandaracinaceae 1477 family 3 1 4 0 Sandaracinus 1055688 0 1 2 2 1473 genus 1 1471 species 0 Sandaracinus amylolyticus 927083 224462 0 3 1851 suborder 0 family 1851 3 1 9 224464 Kofleriaceae 1842 genus 2 1 12 0 162027 Haliangium 0 1830 species 1 80816 Haliangium ochraceum 0 26 suborder 12142 80811 Archangiaceae 39 0 78 1 9 family 3965 genus 682 2 14 1 0 44 Melittangium Melittangium boletus 83453 1 species 668 0 Archangium 47 0 1 1 2 1755 genus 48 Archangium gephyra 1754 species 1 0 0 genus 868 2 14 1 42 Cystobacter 43 Cystobacter fuscus 854 species 1 0 2 582 genus 2 1 0 Stigmatella 40 0 1 580 species Stigmatella aurantiaca 41 0 5 family 2252 1 9 Anaeromyxobacteraceae 1524215 Anaeromyxobacter 161492 0 26 1 4 2243 genus 2620896 0 2 no rank 1285 447217 Anaeromyxobacter sp. K 540 species 1 0 Anaeromyxobacter sp. Fw109-5 404589 0 1 species 745 161493 Anaeromyxobacter dehalogenans 932 species 1 0 1524213 Vulgatibacteraceae 0 4 1 family 559 3 1524214 Vulgatibacter 0 genus 555 2 1 6 0 1 549 species Vulgatibacter incomptus 1391653 Myxococcaceae 31 16 1 9 family 5366 0 83461 Corallococcus 0 38 1 1677 genus 3 1 species 678 0 Myxococcus macrosporus 35 Corallococcus coralloides 184914 1 961 species 0 Myxococcus 32 5 genus 3673 114 1 0 species 592 1 0 34 Myxococcus xanthus 1 species 708 0 Myxococcus stipitatus 83455 1 1530 species 0 Myxococcus fulvus 33 0 1 species 729 Myxococcus hansupus 1297742 0 53 1 26 6831 order Desulfovibrionales 213115 1 2 3 197 family 0 Desulfohalobiaceae 213117 1 6 195 genus 2 0 45662 Desulfohalobium 189 species 1 0 45663 Desulfohalobium retbaense Desulfomicrobiaceae 213116 0 2 1 4 465 family 898 Desulfomicrobium 0 genus 463 3 8 1 0 1 species 251 Desulfomicrobium baculatum 899 0 204 species 1 132132 Desulfomicrobium orale 0 1 41 18 family 6116 Desulfovibrionaceae 194924 0 9 1 842 genus 4 2035811 Pseudodesulfovibrio Pseudodesulfovibrio profundus 57320 0 1 species 254 1 277 species 0 Pseudodesulfovibrio indicus 1716143 Pseudodesulfovibrio aespoeensis 182210 0 1 species 302 0 1 233 genus 2582840 Desulfovibrio africanus 873 1 species 233 0 35 1 9 genus 2635 0 Desulfovibrio 872 0 1 143 species Desulfovibrio piger 901 0 no rank 137 1 2593640 631220 Desulfovibrio sp. G11 species 137 1 0 Candidatus Desulfovibrio trichonymphae 1725232 0 1 species 116 876 Desulfovibrio desulfuricans 0 species 466 1 0 1 species 288 Desulfovibrio alaskensis 58180 0 1 species 173 Desulfovibrio fairfieldensis 44742 184917 Desulfovibrio magneticus 439 species 1 0 Desulfovibrio vulgaris 881 1 species 838 0 41707 Lawsonia 1 4 genus 1687 2 0 29546 Lawsonia intracellularis 0 1683 species 1 genus 678 1 0 2794998 0 1 678 species Desulfovibrio salexigens 880 Epsilonproteobacteria 29547 0 1 71 74 class 87857 0 order 85930 67 1 144 213849 Campylobacterales 1 111 41 71266 family 0 Campylobacteraceae 72294 1 91 9 5505 genus 0 Sulfurospirillum 57665 2618290 0 no rank 2658 3 220622 Sulfurospirillum sp. JPD-1 743 species 1 0 0 805 species 1 1986224 Sulfurospirillum sp. SL2-1 1 1110 species 0 Sulfurospirillum sp. UCH001 1581011 species 709 1 0 65553 Sulfurospirillum deleyianum species 699 1 0 44674 Sulfurospirillum barnesii 66821 Sulfurospirillum multivorans 530 species 1 0 366522 Sulfurospirillum cavolei 312 species 1 0 Sulfurospirillum halorespirans 194424 0 1 506 species 0 genus 45632 26 1 360 194 Campylobacter 197 Campylobacter jejuni 0 3865 species 1 200 Campylobacter curvus 244 species 1 0 Campylobacter avium 522485 1 species 967 0 Campylobacter peloridis 488546 1 1818 species 0 76517 Campylobacter hominis 0 species 1150 1 0 1 2254 species Campylobacter insulaenigrae 260714 0 species 2001 1 1031542 Campylobacter volucris 1965231 Campylobacter pinnipediorum 0 2793 species 1 5160 species 1 0 201 Campylobacter lari 28898 Campylobacter helveticus 0 915 species 1 Campylobacter fetus 196 1 1778 species 0 1 1058 species 0 Campylobacter iguaniorum 1244531 Campylobacter hyointestinalis 198 1 1434 species 0 199 Campylobacter concisus species 1140 1 0 497724 Campylobacter subantarcticus species 1900 1 0 Campylobacter cuniculorum 374106 1 1419 species 0 Campylobacter sputorum 206 0 1 3328 species Campylobacter ureolyticus 827 1 species 2171 0 4 5619 no rank 0 2593542 Campylobacter sp. RM12175 1660076 1 1369 species 0 0 1 species 1360 Campylobacter sp. RM8964 1660074 1 2004 species 0 Campylobacter sp. RM16704 1500960 Campylobacter sp. RM6137 1660073 1 886 species 0 1 206 species 0 Campylobacter gracilis 824 Campylobacter lanienae 75658 0 1 species 829 0 3223 species 1 195 Campylobacter coli 2321108 0 5 20018 no rank 0 4714 genus 1 2321187 Arcobacter sp. LPB0137 1850254 0 1 4714 species 103 1 genus 10355 3 0 28196 Arcobacter 0 species 4084 1 28199 Arcobacter nitrofigilis 1 species 6168 0 Arcobacter butzleri 28197 2321207 1 no rank 4949 0 0 1 4949 species Arcobacter sp. L 944547 family 2685 5 0 2771471 0 3 genus 2403 1 5 Sulfurimonas 202746 0 1 1367 species Sulfurimonas denitrificans 39766 1 species 1031 0 Sulfurimonas autotrophica 202747 286130 Sulfuricurvum 0 282 genus 2 1 1 1 281 species 0 Sulfuricurvum kujiense 148813 1 20 15 family 10579 0 Helicobacteraceae 72293 Helicobacter 209 41 1 12 10250 genus 0 0 796 species 1 37372 Helicobacter bilis 0 1 371 species Helicobacter himalayensis 1591088 species 1254 1 0 138563 Helicobacter cetorum Helicobacter mustelae 217 1 species 413 0 212 Helicobacter acinonychis species 387 1 0 Helicobacter pylori 210 0 1 species 4367 1 214 species 0 Helicobacter felis 214 2593540 0 448 no rank 1 0 species 448 1 222136 Helicobacter sp. MIT 01-6242 Helicobacter typhlonius 76936 0 1 species 520 1 650 species 0 Helicobacter cinaedi 213 0 1 789 species Helicobacter hepaticus 32025 0 3 1 genus 309 2 843 Wolinella 844 Wolinella succinogenes 0 species 306 1 2771472 0 family 1256 5 Sulfurovum 265570 0 1 16 3 genus 962 206403 Sulfurovum lithotrophicum 531 species 1 0 0 no rank 415 1 2646778 0 1 species 415 Sulfurovum sp. NBC37-1 387093 269260 Nitratifractor 294 genus 2 1 1 0 0 1 species 293 Nitratifractor salsuginis 269261 4 1 6 1856 order 0 Nautiliales 235899 2795691 2 613 family 0 1 1 2 genus 613 0 Nitratiruptor 269258 2624044 1 no rank 612 0 0 1 612 species Nitratiruptor sp. SB155-2 387092 224467 Nautiliaceae 0 1239 family 3 1 5 Nautilia 191291 12 1 2 1234 genus 0 244787 Nautilia profundicola species 1222 1 0 1807140 class 1312 6 0 41 1 1312 order 6 0 225057 Acidithiobacillales 0 1 30 1271 family 5 225058 Acidithiobacillaceae 119977 Acidithiobacillus genus 1241 4 1 32 0 Acidithiobacillus ferrivorans 160808 0 1 species 402 0 species 329 1 920 Acidithiobacillus ferrooxidans 0 478 species 1 33059 Acidithiobacillus caldus 351 157359 class 187 1 0 Betaproteobacteria 28216 0 22 4930 order 71 1 Rhodocyclales 206389 1 41 12 3640 family 0 Zoogloeaceae 2008794 Thauera 33057 0 6 genus 1920 54 1 0 no rank 775 2 2609274 0 1 367 species Thauera sp. K11 2005884 1 species 408 0 Thauera sp. MZ1T 85643 1 362 species 0 Thauera humireducens 1134435 96773 Thauera chlorobenzoica 377 species 1 0 352 species 1 0 59405 Thauera aromatica 22 1 5 genus 1679 0 Azoarcus 12960 2067960 Azoarcus sp. SY39 species 414 1 0 0 345 species 1 418699 Azoarcus olearius 0 2 898 no rank 2629479 198107 Azoarcus sp. CIB 526 species 1 0 748247 Azoarcus sp. KH32C 0 species 372 1 1 2 3 328 family 0 Azonexaceae 2008795 0 326 genus 2 4 1 73029 Dechloromonas 259537 Dechloromonas aromatica 322 species 1 0 0 14 1 6 family 891 Rhodocyclaceae 75787 0 1 237 no rank 75788 0 species 237 1 1898103 Rhodocyclaceae bacterium Aromatoleum 551759 0 10 1 2 345 genus 551760 Aromatoleum aromaticum species 335 1 0 146937 Azospira 8 1 295 genus 2 0 0 1 species 287 Azospira oryzae 146939 2 1162 no rank 0 33809 695 species 1 0 543913 beta proteobacterium CB 1 467 species 0 Betaproteobacteria bacterium GR16-43 1904640 Burkholderiales 80840 234 117191 order 997 1 0 0 1 202 21632 family 57 80864 Comamonadaceae 0 8 1 genus 438 2 201096 Alicycliphilus Alicycliphilus denitrificans 179636 0 1 430 species 2490452 602 genus 2 0 0 300 species 1 1458426 Comamonadaceae bacterium B1 1458425 Comamonadaceae bacterium A1 0 302 species 1 genus 283 1 0 2678886 2116657 Melaminivora sp. SC2-7 0 283 species 1 4 1 genus 317 2 0 1649468 Melaminivora 0 1 313 no rank 2641902 species 313 1 0 2109913 Melaminivora sp. SC2-9 238749 Diaphorobacter 0 genus 266 2 3 1 species 263 1 0 1546149 Diaphorobacter polyhydroxybutyrativorans Variovorax 34072 0 5 4431 genus 1 51 2556 species 1 0 34073 Variovorax paradoxus 1 species 542 0 Variovorax boronicumulans 436515 1282 no rank 2 0 663243 Variovorax sp. PAMC 28711 1795631 0 1 species 595 0 1 species 687 Variovorax sp. PMC12 2126319 12916 Acidovorax 1 87 genus 2630 9 0 212 species 1 0 553814 Acidovorax sp. NA3 0 species 451 1 80867 Acidovorax avenae 4 no rank 1222 0 2684926 232721 Acidovorax sp. JS42 species 208 1 0 1842533 Acidovorax sp. RAC01 0 species 274 1 358220 Acidovorax sp. KKS102 species 276 1 0 Acidovorax sp. T1 1858609 0 1 464 species 0 species 242 1 721785 Acidovorax ebreus 0 416 species 1 80869 Acidovorax citrulli 0 1 246 genus 352450 Simplicispira sp. SC1-8 2109915 1 246 species 0 Polaromonas 52972 0 3 genus 1831 1 5 0 1 species 584 Polaromonas naphthalenivorans 216465 2638319 0 1 1242 no rank 1 species 1242 0 Polaromonas sp. JS666 296591 Limnohabitans 665874 3 genus 534 4 1 0 2626134 530 no rank 2 0 267 species 1 0 1678128 Limnohabitans sp. 63ED37-2 263 species 1 0 1678129 Limnohabitans sp. 103DPR2 248 genus 1 0 1436289 1436290 Candidatus Symbiobacter mobilis species 248 1 0 20 1 genus 1272 5 0 28065 Rhodoferax 192843 Rhodoferax ferrireducens 0 292 species 1 0 1 species 210 Rhodoferax saidenbachensis 1484693 species 448 1 0 1842727 Rhodoferax koreense Rhodoferax antarcticus 81479 0 1 species 302 0 3 631 genus 1 7 Ottowia 219181 2645081 0 1 273 no rank Ottowia sp. oral taxon 894 1658672 1 273 species 0 351 species 1 0 2109914 Ottowia sp. KADR8-3 2 1 genus 1048 4 0 47420 Hydrogenophaga 2610897 0 759 no rank 2 Hydrogenophaga sp. RAC07 1842537 1 species 336 0 423 species 1 0 795665 Hydrogenophaga sp. PBC 0 1 species 287 Hydrogenophaga crassostreae 1763535 0 1006 genus 2 2 1 364316 Verminephrobacter Verminephrobacter eiseniae 364317 1 1004 species 0 0 2 genus 751 1 7 Ramlibacter 174951 Ramlibacter tataouinensis 94132 0 1 744 species 24 1 genus 2660 4 0 283 Comamonas 0 888 species 1 1082851 Comamonas serinivorans species 661 1 0 285 Comamonas testosteroni Comamonas kerstersii 225992 0 1 1087 species Delftia 80865 50 1 5 genus 2236 0 2613839 no rank 1221 2 0 742013 Delftia sp. Cs1-4 0 754 species 1 1920191 Delftia sp. HK171 0 species 467 1 Delftia acidovorans 80866 1 423 species 0 0 species 542 1 180282 Delftia tsuruhatensis Alcaligenaceae 506 0 1 85 44 family 17550 2 genus 293 1 6 0 Castellaniella 359336 0 1 species 287 Castellaniella defragrans 75697 305976 Pusillimonas genus 462 2 2 1 0 2640016 1 460 no rank 0 0 1 species 460 Pusillimonas sp. T7-7 1007105 2 genus 1512 1 4 0 Alcaligenes 507 1 species 1508 0 Alcaligenes faecalis 511 Orrella 1921582 2 336 genus 1 10 0 1851544 Orrella dioscoreae species 326 1 0 90 1 genus 3896 6 0 222 Achromobacter 0 1 no rank 383 2626865 1758194 Achromobacter sp. AONIH1 species 383 1 0 0 species 437 1 217204 Achromobacter insolitus 217203 Achromobacter spanius species 729 1 0 Achromobacter xylosoxidans 85698 0 1 species 1471 Achromobacter denitrificans 32002 0 1 species 786 0 3 1 568 genus 2 90243 Oligella 0 1 565 species Oligella urethralis 90245 1100891 Paenalcaligenes 0 5 1 genus 622 2 643674 Paenalcaligenes hominis 617 species 1 0 Advenella 290425 3 674 genus 6 1 0 Advenella mimigardefordensis 302406 1 365 species 0 0 species 303 1 310575 Advenella kashmirensis 0 2 genus 701 3 1 Basilea 1472344 1472345 Basilea psittacipulmonis 0 species 698 1 genus 5924 17 1 155 0 517 Bordetella Bordetella genomosp. 9 1416803 1 285 species 0 123899 Bordetella trematum 0 species 274 1 species 272 1 0 94624 Bordetella petrii Bordetella genomosp. 13 463040 1 434 species 0 Bordetella pseudohinzii 1331258 1 species 244 0 463025 Bordetella bronchialis 0 species 382 1 0 461 species 1 520 Bordetella pertussis Bordetella holmesii 35814 0 1 221 species 0 species 797 1 518 Bordetella bronchiseptica species 374 1 0 1416806 Bordetella genomosp. 8 Bordetella parapertussis 519 1 species 475 0 Bordetella avium 521 0 1 202 species 103855 Bordetella hinzii species 333 1 0 2630031 264 no rank 1 0 Bordetella sp. H567 1697043 0 1 species 264 340 species 1 0 463014 Bordetella flabilis Bordetella genomosp. 6 463024 1 411 species 0 0 13 1 3 genus 2477 Taylorella 29574 Taylorella equigenitalis 29575 0 1 species 1303 Taylorella asinigenitalis 84590 0 1 1161 species 75682 Oxalobacteraceae 0 10320 family 29 66 1 846 Oxalobacter 0 2 1 genus 251 2 1 species 249 0 Oxalobacter formigenes 847 Herbaspirillum 963 0 6 genus 2863 1 24 no rank 428 1 0 2624150 0 1 428 species Herbaspirillum sp. meg3 2025949 341045 Herbaspirillum hiltneri 0 species 717 1 1 460 species 0 Herbaspirillum frisingense 92645 80842 Herbaspirillum rubrisubalbicans 0 species 347 1 Herbaspirillum seropedicae 964 1 887 species 0 Collimonas 202907 0 1 41 4 genus 1538 279058 Collimonas arenae 0 species 634 1 Collimonas fungivorans 158899 0 1 species 474 279113 Collimonas pratensis 0 389 species 1 Massilia 149698 41 1 6 2427 genus 0 0 1 species 434 Massilia putida 1141883 1 558 species 0 Massilia sp. ZMN-3 2072590 452 species 1 0 2045208 Massilia sp. B2 no rank 942 2 0 2609279 0 1 species 418 Massilia sp. NR 4-1 1678028 1707785 Massilia sp. WG5 0 species 524 1 29580 Janthinobacterium 30 1 2590 genus 7 0 2610881 0 4 1684 no rank Janthinobacterium sp. LM6 1938606 0 1 species 403 1 319 species 0 Janthinobacterium sp. Marseille 375286 1236179 Janthinobacterium sp. B9-8 0 species 483 1 Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 1 479 species 0 Janthinobacterium agaricidamnosum 55508 0 1 375 species 0 species 501 1 368607 Janthinobacterium svalbardensis 0 1 4 3 585 genus Herminiimonas 303379 204773 Herminiimonas arsenicoxydans 0 270 species 1 0 1 311 species Herminiimonas arsenitoxidans 1809410 59942 family 84 285 1 0 119060 Burkholderiaceae 0 12 6032 genus 57 1 Paraburkholderia 1822464 36873 Paraburkholderia xenovorans 0 species 595 1 75105 Paraburkholderia caribensis 0 1074 species 1 0 1 species 535 Paraburkholderia hospita 169430 0 1 628 species Paraburkholderia phytofirmans 261302 2026199 Paraburkholderia aromaticivorans 0 species 491 1 no rank 474 1 0 2615204 0 species 474 1 1926494 Paraburkholderia sp. SOS3 0 431 species 1 948107 Paraburkholderia sprentiae 252970 Paraburkholderia phenoliruptrix species 410 1 0 Paraburkholderia phymatum 148447 0 1 species 474 species 439 1 0 311230 Paraburkholderia terrae 0 species 424 1 134537 Paraburkholderia fungorum 10 genus 4655 58 1 0 Pandoraea 93217 93221 Pandoraea pulmonicola 1263 species 1 0 species 578 1 0 93219 Pandoraea norimbergensis species 277 1 0 445709 Pandoraea thiooxydans Pandoraea vervacti 656178 1 species 396 0 93218 Pandoraea apista species 342 1 0 species 699 1 0 93220 Pandoraea pnomenusa species 441 1 0 573737 Pandoraea oxalativorans 0 276 species 1 93222 Pandoraea sputorum 656179 Pandoraea faecigallinarum 0 325 species 1 1827195 1 genus 556 0 Burkholderia sp. RPE64 758793 0 1 species 556 106589 Cupriavidus genus 6681 9 1 125 0 0 1 465 species Cupriavidus gilardii 82541 1 species 457 0 Cupriavidus pinatubonensis 248026 2640874 2 no rank 1913 0 0 1 1117 species Cupriavidus sp. USMAA2-4 876364 Cupriavidus sp. USMAHM13 1389192 0 1 species 796 106590 Cupriavidus necator 681 species 1 0 0 1 species 1138 Cupriavidus basilensis 68895 0 1 species 1098 Cupriavidus metallidurans 119219 Cupriavidus sp. USMAA1020 367825 0 1 804 species 919 1 41 35746 genus 0 Burkholderia 32008 111527 7 12567 species group 0 0 1 species 698 Burkholderia oklahomensis 342113 0 825 species 1 1637841 Burkholderia sp. MSMB0852 1380 species 1 0 13373 Burkholderia mallei 0 species 6875 1 28450 Burkholderia pseudomallei species 712 1 0 1637831 Burkholderia sp. MSMB617WGS 0 623 species 1 1637837 Burkholderia sp. MSMB0266 species 1454 1 0 57975 Burkholderia thailandensis 337 Burkholderia glumae 1086 species 1 0 28095 Burkholderia gladioli 1055 species 1 0 Burkholderia plantarii 41899 1 579 species 0 0 species group 15095 19 87882 1 species 967 0 Burkholderia vietnamiensis 60552 0 399 species 1 265293 [Pseudomonas] mesoacidophila Burkholderia pyrrocinia 60550 1 331 species 0 Burkholderia diffusa 488732 0 1 307 species 1207504 Burkholderia pseudomultivorans species 345 1 0 0 964 species 1 87883 Burkholderia multivorans 101571 Burkholderia ubonensis 0 1430 species 1 1 1421 species 0 Burkholderia lata 482957 0 species 2300 1 292 Burkholderia cepacia Burkholderia cenocepacia 95486 0 1 2031 species 0 1 322 species Burkholderia territorii 1503055 488446 Burkholderia latens 0 810 species 1 1 412 species 0 Burkholderia metallica 488729 1503054 Burkholderia stagnalis 0 species 448 1 0 1 species 353 Burkholderia dolosa 152500 Burkholderia ambifaria 152480 0 1 species 666 488447 Burkholderia contaminans 0 species 470 1 454 species 1 0 488731 Burkholderia seminalis 95485 Burkholderia stabilis 665 species 1 0 2613784 11 no rank 4445 0 758796 Burkholderia sp. RPE67 species 544 1 0 1795874 Burkholderia sp. PAMC 28687 species 256 1 0 Burkholderia sp. Bp5365 1740162 1 414 species 0 0 1 371 species Burkholderia sp. 2002721687 1468409 640512 Burkholderia sp. CCGE1003 501 species 1 0 Burkholderia sp. CCGE1001 640510 1 species 445 0 0 1 species 455 Burkholderia sp. HB1 1678678 1097668 Burkholderia sp. YI23 species 508 1 0 1 species 275 0 Burkholderia sp. Bp7605 1740163 Burkholderia sp. PAMC 26561 1795043 0 1 species 275 Burkholderia sp. KJ006 416344 1 species 401 0 0 12 1 2151 genus 4 44013 Polynucleobacter 576610 Polynucleobacter necessarius species 446 1 0 1835254 Polynucleobacter duraquae 0 666 species 1 Polynucleobacter asymbioticus 576611 0 1 1027 species 2571159 genus 275 1 0 Paraburkholderia rhizoxinica 412963 1 species 275 0 Ralstonia 48736 0 5 3561 genus 1 41 0 species 702 1 329 Ralstonia pickettii 0 553 species 1 105219 Ralstonia mannitolilytica Ralstonia solanacearum 305 0 1 species 1907 358 species 1 0 190721 Ralstonia insidiosa 0 6020 no rank 17 224471 65047 Mitsuaria 0 659 genus 2 1 10 0 649 no rank 1 2648776 1658665 Mitsuaria sp. 7 0 649 species 1 1 913 species 0 [Polyangium] brachysporum 413882 Thiomonas 32012 2 genus 473 2 1 0 species 471 1 0 926 Thiomonas intermedia Methylibium 316612 0 2 380 genus 1 15 0 365 species 1 105560 Methylibium petroleiphilum 93681 Roseateles 0 genus 1138 2 5 1 76731 Roseateles depolymerans 1133 species 1 0 88 Leptothrix 0 8 1 538 genus 2 Leptothrix cholodnii 34029 1 species 530 0 0 2 792 genus 10 1 Paucibacter 318147 2642959 0 1 782 no rank 1 species 782 0 Paucibacter sp. KCTC 42545 1768242 Rubrivivax 28067 0 7 1 2 640 genus Rubrivivax gelatinosus 28068 1 633 species 0 212743 Rhizobacter 1 8 genus 487 2 0 Rhizobacter gummiphilus 946333 1 species 479 0 0 730 no rank 2 80841 0 217 species 1 1469502 Burkholderiales bacterium GJ-E10 1 513 species 0 Burkholderiales bacterium YL45 1834205 206351 Neisseriales 100 1 order 10624 36 0 481 Neisseriaceae 1 42 7610 family 22 0 Vitreoscilla 59 1 6 3 genus 918 0 1 species 209 0 Vitreoscilla filiformis 63 1 no rank 703 0 2627922 703 species 1 0 96942 Vitreoscilla sp. C1 Snodgrassella 1193515 2 genus 736 2 1 0 1 species 734 0 Snodgrassella alvi 1196083 71 Simonsiella 4 1 584 genus 2 0 1 580 species 0 Simonsiella muelleri 72 421605 0 no rank 1413 1 2052837 Neisseriaceae bacterium DSM 100970 0 1413 species 1 0 313 genus 1 538 539 Eikenella corrodens 313 species 1 0 Neisseria 482 99 1 12 3604 genus 0 Neisseria gonorrhoeae 485 1 297 species 0 28091 Neisseria weaveri 0 316 species 1 1 144 species 0 Neisseria sicca 490 0 1 species 310 Neisseria lactamica 486 0 1 species 143 Neisseria mucosa 488 0 1 203 species Neisseria elongata 495 Neisseria meningitidis 487 1 1160 species 0 1 species 173 0 Neisseria sp. 10023 1853278 1 species 276 0 Neisseria zoodegmatis 326523 0 2 no rank 483 2623750 0 1 species 220 Neisseria sp. KEM232 655307 0 species 263 1 1853276 Neisseria sp. 10022 1 50 2914 family 13 0 1499392 Chromobacteriaceae 11 1 344 genus 2 0 568394 Pseudogulbenkiania 0 no rank 333 1 2642558 0 1 species 333 Pseudogulbenkiania sp. NH8B 748280 no rank 1646 4 0 90153 Chromobacterium 535 4 1646 genus 44 1 0 1 453 species 0 Chromobacterium violaceum 536 Chromobacterium vaccinii 1108595 1 690 species 0 1 no rank 459 0 2641838 0 1 459 species Chromobacterium sp. ATCC 53434 2059672 2 293 genus 5 1 0 Laribacter 168470 Laribacter hongkongensis 168471 0 1 species 288 Jeongeupia 885864 2 genus 321 7 1 0 2619593 no rank 314 1 0 1 314 species 0 Jeongeupia sp. USM3 1906741 0 260 genus 2 1 2 187 Aquaspirillum 2620219 no rank 258 1 0 species 258 1 0 1938604 Aquaspirillum sp. LM1 119066 13 no rank 10772 0 0 6 genus 8309 28 1 Kinetoplastibacterium 33055 994695 Candidatus Kinetoplastibacterium galatii species 1346 1 0 233181 Kinetoplastibacterium blastocrithidii 0 1352 species 1 0 1 1483 species Candidatus Kinetoplastibacterium oncopeltii 994696 33056 Candidatus Kinetoplastibacterium crithidii 0 1884 species 1 species 2216 1 0 994692 Candidatus Kinetoplastibacterium desouzaii 1381133 Candidatus Profftella 0 genus 1637 2 5 1 0 1 species 1632 Candidatus Profftella armatura 669502 Candidatus Accumulibacter 327159 0 2 1 2 346 genus species 344 1 0 327160 Candidatus Accumulibacter phosphatis 1301080 0 360 genus 1 Candidatus Nasuia deltocephalinicola 1160784 1 360 species 0 2 120 genus 1 1 0 Candidatus Tremblaya 189384 189385 Candidatus Tremblaya princeps 0 species 119 1 32003 Nitrosomonadales 85 1 12493 order 43 0 Methylophilaceae 32011 0 21 1 14 5043 family 0 2 genus 282 2 1 Methylobacillus 404 species 280 1 0 405 Methylobacillus flagellatus 0 3 530 genus 26 1 Methylovorus 81682 241 no rank 1 0 2634027 0 1 species 241 Methylovorus sp. MP688 887061 263 species 1 0 266009 Methylovorus glucosotrophus Methylophilus 16 2 352 genus 1 2 0 350 no rank 1 0 2630143 Methylophilus sp. TWE2 1662285 1 species 350 0 0 genus 1485 3 1 15 359407 Methylotenera 887 species 1 0 1055487 Methylotenera versatilis 583 species 1 0 359408 Methylotenera mobilis 3 genus 2373 1 8 0 Candidatus Methylopumilus 1679002 1 species 553 0 Candidatus Methylopumilus turicensis 1581680 0 1 1812 species Candidatus Methylopumilus planktonicus 1581557 0 family 568 5 7 1 90627 Gallionellaceae 0 2 genus 307 11 1 Sideroxydans 314343 0 1 species 296 Sideroxydans lithotrophicus 63745 1 1 2 genus 254 0 Gallionella 96 0 1 253 species Gallionella capsiferriformans 370405 2008793 Sterolibacteriaceae 1 10 family 582 5 0 Methyloversatilis 378210 0 4 1 2 genus 287 2639971 0 1 283 no rank Methyloversatilis sp. RAC08 1842540 0 1 species 283 Sulfuritalea 1054211 2 285 genus 1 4 0 281 species 1 0 748811 Sulfuritalea hydrogenivorans 4 649 family 0 2772226 0 5 1 271 genus 2 1778653 Sulfuriferula 2637784 0 1 266 no rank 1 species 266 0 Sulfuriferula sp. AH1 1985873 Sulfuricella 935200 0 2 1 2 genus 378 649841 Sulfuricella denitrificans 376 species 1 0 281 family 2 0 2008790 Thiobacillus 919 0 2 genus 281 10 1 0 1 271 species Thiobacillus denitrificans 36861 0 family 5285 12 21 1 206379 Nitrosomonadaceae 35798 Nitrosospira 6 1 genus 717 4 0 1231 Nitrosospira multiformis 0 217 species 1 238 species 1 0 35799 Nitrosospira briensis Nitrosospira lacus 1288494 1 256 species 0 1 29 7 4547 genus 0 Nitrosomonas 914 1 953 species 0 Nitrosomonas communis 44574 Nitrosomonas eutropha 916 0 1 618 species 2609265 no rank 1724 2 0 Nitrosomonas sp. Is79A3 261292 1 770 species 0 0 species 954 1 153948 Nitrosomonas sp. AL212 0 353 species 1 915 Nitrosomonas europaea 0 870 species 1 44577 Nitrosomonas ureae Oligoflexia 1553900 0 13 class 5377 1 8 2024979 Bacteriovoracales 0 15 1 order 3269 7 1652132 Halobacteriovoraceae family 2362 3 1 7 0 Halobacteriovorax 1652133 0 2 2355 genus 1 6 0 2349 species 1 97084 Halobacteriovorax marinus 263369 Bacteriovoracaceae 0 family 892 3 1 1 0 4 1 genus 891 2 146784 Bacteriovorax 1 species 887 0 Bacteriovorax stolpii 960 8 1 5 2100 order 0 Bdellovibrionales 213481 213483 Bdellovibrionaceae 0 3 1 2092 family 4 0 9 1 3 genus 2089 Bdellovibrio 958 Bdellovibrio exovorus 453816 0 1 species 617 Bdellovibrio bacteriovorus 959 1 species 1463 0 200938 5 phylum 260 0 118001 Chrysiogenetes 1 1 class 260 5 0 Chrysiogenales 189769 0 8 1 4 259 order 189770 Chrysiogenaceae family 251 3 1 1 0 0 8 1 2 genus 250 Desulfurispirillum 393029 936456 Desulfurispirillum indicum 0 species 242 1 2138240 4 phylum 398 0 1 1 4 398 class 0 Coprothermobacteria 2138243 2138246 Coprothermobacterales 0 1 1 order 397 3 0 2 396 family 2138247 0 6 1 2 396 genus Coprothermobacter 68335 35786 Coprothermobacter proteolyticus species 390 1 0 3230 phylum 20 0 57723 204432 Acidobacteriia class 2848 17 1 23 0 332160 Solibacterales 0 order 555 4 6 1 0 family 549 3 1 8 332161 Solibacteraceae genus 541 2 2 1 0 332162 Candidatus Solibacter 0 1 species 539 Candidatus Solibacter usitatus 332163 Acidobacteriales 204433 1 15 12 2270 order 0 0 11 family 2255 1 20 Acidobacteriaceae 204434 Granulicella 940557 3 755 genus 9 1 0 Granulicella mallensis 940614 1 species 305 0 940615 Granulicella tundricola 0 441 species 1 658061 Candidatus Koribacter 0 314 genus 2 1 3 species 311 1 0 658062 Candidatus Koribacter versatilis 0 1 3 2 539 genus Acidobacterium 33973 0 1 536 species Acidobacterium capsulatum 33075 genus 627 3 8 1 0 392733 Terriglobus Terriglobus saanensis 870903 1 348 species 0 species 271 1 0 392734 Terriglobus roseus 0 1 2 class 382 3 1562566 Blastocatellia Chloracidobacterium 458032 0 1 3 2 genus 380 0 377 species 1 458033 Chloracidobacterium thermophilum 0 phylum 759 5 1930617 0 5 759 class 3 1 Calditrichae 1962850 0 1 4 4 756 order Calditrichales 1962852 0 family 752 3 2 1 1962854 Calditrichaceae 0 2 genus 750 1 1 Caldithrix 187144 749 species 1 0 187145 Caldithrix abyssi 2498710 0 3 707 clade 67814 3 phylum 707 0 693071 Caldisericia class 707 3 4 1 0 693072 Caldisericales 0 order 703 2 3 1 family 700 1 0 693073 0 1 genus 700 693074 Caldisericum exile 693075 0 1 species 700 508458 0 phylum 1178 12 649775 Synergistia 0 1 2 class 1178 12 Synergistales 649776 0 11 order 1176 1 6 1 7 family 1170 10 0 649777 Synergistaceae 81461 Thermanaerovibrio 0 genus 130 2 3 1 Thermanaerovibrio acidaminovorans 81462 0 1 127 species 81466 Aminobacterium 0 genus 314 2 4 1 species 310 1 0 81468 Aminobacterium colombiense 336260 259 genus 1 0 Thermovirga lienii 336261 0 1 259 species Acetomicrobium 49894 1 1 2 256 genus 0 1 species 255 0 Acetomicrobium mobile 97477 0 1 3 2 204 genus Cloacibacillus 508459 1197717 Cloacibacillus porcorum 0 species 201 1 32066 25 53553 phylum 0 Fusobacteriia 203490 0 1 85 25 53553 class 0 24 53468 order 1 85 Fusobacteriales 203491 1129771 Leptotrichiaceae 0 1 41 family 12400 12 Streptobacillus 34104 1 1 2 2284 genus 0 Streptobacillus moniliformis 34105 1 2283 species 0 0 genus 7044 5 28 1 32067 Leptotrichia 2633022 5315 no rank 3 0 0 species 1565 1 712357 Leptotrichia sp. oral taxon 212 species 1803 1 0 712368 Leptotrichia sp. oral taxon 498 0 1947 species 1 1785996 Leptotrichia sp. oral taxon 847 40542 Leptotrichia buccalis 0 1701 species 1 168808 Sneathia 1531 genus 2 1 2 0 0 species 1529 1 187101 Sneathia amnii 32068 Sebaldella 0 genus 1500 2 1 1 1 1499 species 0 Sebaldella termitidis 826 1 33 family 40983 11 0 203492 Fusobacteriaceae 0 160 1 genus 39503 9 848 Fusobacterium 0 1 species 4908 Fusobacterium varium 856 1 species 15391 0 Fusobacterium nucleatum 851 Fusobacterium gonidiaformans 849 0 1 species 1292 0 species 4433 1 1583098 Fusobacterium hwasookii 850 Fusobacterium mortiferum species 2442 1 0 Fusobacterium ulcerans 861 1 species 2419 0 0 1 897 species Fusobacterium necrophorum 859 Fusobacterium periodonticum 860 1 species 7561 0 0 genus 1447 1 167639 1447 species 1 0 167642 Ilyobacter polytropus 200940 0 8 4227 phylum Thermodesulfobacteria 67799 8 4227 class 12 1 0 188710 Thermodesulfobacteriales 0 order 4215 7 1 12 0 4203 family 6 1 11 188711 Thermodesulfobacteriaceae 0 526 genus 1 241192 1 species 526 0 Thermodesulfatator indicus 171695 0 2966 genus 3 7 1 1740 Thermodesulfobacterium 2141 species 1 0 1295609 Thermodesulfobacterium geofontis 1741 Thermodesulfobacterium commune 0 species 818 1 genus 700 1 0 444090 0 1 700 species Caldimicrobium thiodismutans 1653476 6 2731 phylum 0 68297 Dictyoglomia 203486 0 6 2731 class 6 1 203487 Dictyoglomales 0 order 2725 5 1 2 Dictyoglomaceae 203488 1 7 4 2723 family 0 Dictyoglomus 13 1 10 3 genus 2716 0 513050 Dictyoglomus turgidum 0 species 1324 1 1382 species 1 0 14 Dictyoglomus thermophilum 200918 19343 phylum 43 0 class 19343 43 1 42 0 188708 Thermotogae Petrotogales 1643947 0 8 order 6556 1 4 1643949 0 family 6552 7 0 2 genus 1565 1 3 Defluviitoga 1511648 Defluviitoga tunisiensis 1006576 1 1562 species 0 160798 Marinitoga 0 4004 genus 3 1 43 0 no rank 1935 1 2640159 1935 species 1 0 1545835 Marinitoga sp. 1137 2026 species 1 0 149715 Marinitoga piezophila 28236 Petrotoga 0 1 1 genus 983 2 Petrotoga mobilis 69499 0 1 982 species 0 32 1 28 11388 order Thermotogales 2419 1643950 Fervidobacteriaceae 7515 family 10 1 17 0 5 genus 5669 34 1 0 Thermosipho 2420 0 1 1352 species Thermosipho melanesiensis 46541 Thermosipho africanus 2421 0 1 1692 species 0 2 2591 no rank 2676525 1320 species 1 0 1437364 Thermosipho sp. 1070 species 1271 1 0 1462747 Thermosipho sp. 1063 Fervidobacterium 2422 4 genus 1829 15 1 0 93466 Fervidobacterium pennivorans 726 species 1 0 species 771 1 0 2424 Fervidobacterium nodosum 2423 Fervidobacterium islandicum species 317 1 0 Thermotogaceae 188709 10 1 17 3841 family 0 1643951 Pseudothermotoga 0 18 1 genus 1968 5 57487 Pseudothermotoga hypogea 94 species 1 0 1 species 662 0 Pseudothermotoga lettingae 177758 Pseudothermotoga thermarum 119394 1 525 species 0 Pseudothermotoga elfii 38322 0 1 species 669 11 1863 genus 1 38 0 Thermotoga 2335 no rank 502 4 0 2631113 126738 Thermotoga sp. RQ7 0 159 species 1 Thermotoga sp. Cell2 1157947 1 91 species 0 1157948 Thermotoga sp. 2812B species 157 1 0 1 95 species 0 Thermotoga sp. RQ2 126740 93929 Thermotoga petrophila 0 133 species 1 Thermotoga naphthophila 93930 1 species 141 0 0 1 200 species Thermotoga maritima 2336 0 1 180 species Thermotoga neapolitana 2337 1 species 591 0 Thermotoga profunda 1508420 1 species 78 0 Thermotoga caldifontis 1508419 1357 order 6 1 14 0 1643946 Kosmotogales Kosmotogaceae 1643948 5 family 1343 8 1 0 1184396 325 genus 1 0 1184387 Mesotoga prima species 325 1 0 651456 Kosmotoga 1010 genus 3 4 1 0 species 571 1 0 1330330 Kosmotoga pacifica 435 species 1 0 651457 Kosmotoga olearia 0 1675 clade 8139732 1783272 phylum 303 4 0 67819 8 1 303 class 4 0 1663419 Fimbriimonadia 2 1 295 order 3 0 1663425 Fimbriimonadales 1663426 293 family 2 0 0 7 1 2 genus 293 Fimbriimonas 1005038 0 1 286 species Fimbriimonas ginsengisoli 1005039 1 28 phylum 214135 633 0 201174 Actinobacteria 1 1 7 1029 class 0 Acidimicrobiia 84992 16 1 1028 order 6 0 84993 Acidimicrobiales 2448023 0 2 family 690 Ilumatobacter 682522 2 genus 690 1 13 0 467094 Ilumatobacter coccineus 0 species 677 1 Acidimicrobiaceae 84994 5 1 3 322 family 0 0 317 genus 2 1 27 53634 Acidimicrobium Acidimicrobium ferrooxidans 53635 1 species 290 0 Rubrobacteria 84995 0 6 569 class 1 2 1 10 567 order 5 0 84996 Rubrobacterales 0 4 557 family 1 6 Rubrobacteraceae 84997 10 1 3 551 genus 0 Rubrobacter 42255 0 species 262 1 42256 Rubrobacter radiotolerans 49319 Rubrobacter xylanophilus 279 species 1 0 84998 Coriobacteriia 13 1 class 4046 29 0 0 1 15 13 order 1519 Coriobacteriales 84999 Atopobiaceae 1643824 6 1077 family 6 1 0 2767353 307 genus 1 0 1 307 species 0 Atopobium parvulum 1382 6 1 4 genus 764 0 Olsenella 133925 0 268 no rank 1 2638792 712411 Olsenella sp. oral taxon 807 268 species 1 0 Olsenella uli 133926 1 198 species 0 0 292 species 1 1805478 Olsenella sp. Marseille-P2300 1 6 6 427 family 0 Coriobacteriaceae 84107 2 genus 127 2 1 0 Coriobacterium 33870 Coriobacterium glomerans 33871 1 125 species 0 0 1 165 no rank 84113 0 165 species 1 1531429 Coriobacteriaceae bacterium 68-1-3 Collinsella 102106 3 1 2 129 genus 0 species 126 1 0 74426 Collinsella aerofaciens 1643822 Eggerthellales 12 1 order 2514 15 0 Eggerthellaceae 1643826 0 14 family 2502 1 42 0 1 4 2 genus 496 Phoenicibacter 1981050 0 1 species 492 Phoenicibacter massiliensis 1944646 Gordonibacter 644652 1 23 3 genus 653 0 species 320 1 0 1841863 Gordonibacter massiliensis species 310 1 0 1335613 Gordonibacter urolithinfaciens 84111 Eggerthella 1 10 606 genus 3 0 1 no rank 203 0 2648737 Eggerthella sp. YY7918 502558 1 species 203 0 Eggerthella lenta 84112 0 1 species 393 0 1 142 genus 84108 Slackia heliotrinireducens 84110 1 species 142 0 genus 211 1 0 84162 84163 Cryptobacterium curtum 0 species 211 1 79603 genus 134 1 0 79604 Denitrobacterium detoxificans 134 species 1 0 218 genus 2 1 1 0 447020 Adlercreutzia species 217 1 0 446660 Adlercreutzia equolifaciens 5 class 2252 1 1 0 Thermoleophilia 1497346 Solirubrobacterales 588673 0 4 2251 order 6 1 1 10 3 2245 family 0 Conexibacteraceae 320583 2 2235 genus 1 13 0 Conexibacter 191494 0 species 2222 1 191495 Conexibacter woesei 0 204514 class 581 753 1 1760 Actinobacteria 85006 Micrococcales 214 1 order 32501 133 0 85020 Dermabacteraceae 1 16 family 3559 11 0 Dermabacter 36739 0 1 4 2 genus 148 1 144 species 0 Dermabacter vaginalis 1630135 472568 Devriesea 0 260 genus 2 1 43 1 217 species 0 Devriesea agamarum 472569 Brachybacterium 43668 0 6 genus 3135 21 1 2017485 Brachybacterium sp. VR2415 species 306 1 0 43669 Brachybacterium faecium 0 362 species 1 0 species 341 1 1331682 Brachybacterium ginsengisoli 0 no rank 337 1 2623841 337 species 1 0 1903186 Brachybacterium sp. P6-10-X1 2017484 Brachybacterium sp. VM2412 1768 species 1 0 85023 Microbacteriaceae 0 12467 family 46 97 1 34 1 1705 genus 6 0 1573 Clavibacter 0 337 1 5 species 1671 Clavibacter michiganensis 28447 0 subspecies 343 1 1874630 Clavibacter capsici 301 subspecies 1 0 31963 Clavibacter nebraskensis 1 377 subspecies 0 Clavibacter sepedonicus 31964 313 subspecies 1 0 33014 Clavibacter insidiosus Curtobacterium 2034 0 4 genus 1155 16 1 257496 2 772 no rank 0 0 species 353 1 1905847 Curtobacterium sp. BH-2-1-1 Curtobacterium sp. MR_MD2014 1561023 0 1 419 species 0 1 species 367 Curtobacterium pusillum 69373 0 233 genus 1 337004 279828 Microcella alkaliphila 0 233 species 1 Microbacterium 33882 0 1 39 14 genus 4155 1 360 species 0 Microbacterium hominis 162426 species 299 1 0 36805 Microbacterium aurum 8 no rank 2581 0 2609290 Microbacterium sp. PAMC 28756 1795053 1 species 278 0 1916917 Microbacterium sp. 1.5R species 290 1 0 0 1 species 283 Microbacterium sp. str. 'China' 2103230 Microbacterium sp. BH-3-3-3 1906742 0 1 species 357 Microbacterium sp. CGR1 1696072 0 1 283 species 297 species 1 0 367477 Microbacterium sp. XT11 Microbacterium sp. TPU 3598 1938334 0 1 267 species 1714373 Microbacterium sp. No. 7 0 species 526 1 300019 Microbacterium paludicola 0 264 species 1 225 species 1 0 84292 Microbacterium chocolatum 2033 Microbacterium testaceum species 387 1 0 0 1 253 genus 1705353 0 253 species 1 708131 Aurantimicrobium minutum 0 2 1 2 151 genus Pontimonas 1434032 species 149 1 0 1159327 Pontimonas salivibrio Cryobacterium 69578 3 genus 552 9 1 0 0 no rank 296 1 2649013 1978566 Cryobacterium sp. LW097 0 296 species 1 1 species 247 0 Cryobacterium arcticum 670052 33886 Rathayibacter 2 1 genus 694 3 0 1 species 283 0 Rathayibacter tritici 33888 Rathayibacter toxicus 145458 0 1 409 species 447237 Frondihabitans 0 1 1 1140 genus 2 0 no rank 1139 1 2626248 0 1 1139 species Frondihabitans sp. PAMC 28766 1795630 0 320 genus 2 1 1 518733 Microterricola 0 species 319 1 412690 Microterricola viridarii 1759331 0 genus 378 1 0 1 378 species Cnuibacter physcomitrellae 1619308 1 genus 717 0 110932 Leifsonia xyli 1575 0 1 717 species Agromyces 33877 2 genus 450 4 1 0 453304 Agromyces aureus 446 species 1 0 1655488 467 no rank 3 0 0 clade 467 3 1655489 0 3 genus 467 14 1 Rhodoluna 529883 0 species 178 1 535712 Candidatus Rhodoluna planktonica Rhodoluna lacicola 529884 1 species 275 0 family 2634 8 1 14 0 85017 Promicromonosporaceae Cellulosimicrobium 157920 3 genus 1117 8 1 0 0 1 526 species Cellulosimicrobium cellulans 1710 2624466 0 no rank 583 1 583 species 1 0 1980001 Cellulosimicrobium sp. TH-20 1 499 genus 0 186188 Xylanimonas cellulosilytica 186189 1 species 499 0 Isoptericola 254250 3 1004 genus 1 5 0 139208 Isoptericola variabilis 0 487 species 1 0 species 512 1 372663 Isoptericola dokdonensis 85016 Cellulomonadaceae family 1600 6 2 1 0 Cellulomonas 1707 5 1598 genus 1 15 0 Cellulomonas fimi 1708 0 1 424 species no rank 369 1 0 2620175 2003551 Cellulomonas sp. PSBB021 species 369 1 0 0 species 445 1 1711 Cellulomonas flavigena Cellulomonas gilvus 11 1 species 345 0 85018 203 family 2 0 1 1 genus 203 2 0 1862 Dermatophilus 1863 Dermatophilus congolensis 0 202 species 1 0 531 family 2 125316 2 531 genus 4 1 0 Beutenbergia 84756 0 1 527 species Beutenbergia cavernae 84757 0 8 1534 family 1 11 Intrasporangiaceae 85021 Intrasporangium 53357 0 1 1 2 313 genus Intrasporangium calvum 53358 0 1 312 species 2 426 genus 25 1 0 Janibacter 53457 Janibacter indicus 857417 1 401 species 0 0 genus 365 1 265976 Serinicoccus sp. JLT9 1758689 0 1 species 365 Arsenicicoccus 267408 0 2 419 genus 5 1 2663846 0 no rank 414 1 species 414 1 0 1658671 Arsenicicoccus sp. oral taxon 190 145360 Sanguibacteraceae 453 family 3 1 1 0 0 2 452 genus 8 1 Sanguibacter 60919 Sanguibacter keddieii 60920 0 1 species 444 10 1 family 536 3 0 85019 Brevibacteriaceae 1 1 2 genus 526 0 Brevibacterium 1696 525 species 1 0 1703 Brevibacterium linens no rank 247 1 0 577468 0 247 genus 1 2038 species 247 1 0 2039 Tropheryma whipplei 124 family 1 0 85022 43673 genus 124 1 0 0 1 species 124 Jonesia denitrificans 43674 Dermacoccaceae 145357 0 10 1 6 family 904 57495 Dermacoccus 1 1 genus 303 2 0 1274 Dermacoccus nishinomiyaensis species 302 1 0 745364 1 genus 371 0 Luteipulveratus mongoliensis 571913 0 1 371 species 57499 Kytococcus 0 genus 220 2 2 1 1276 Kytococcus sedentarius 0 species 218 1 59 1 7495 family 35 0 1268 Micrococcaceae 0 366 genus 2 1 1 596707 Sinomonas 0 365 species 1 37927 Sinomonas atrocyanea Arthrobacter 1663 76 1 15 genus 4068 0 656366 Arthrobacter alpinus species 477 1 0 235627 0 3230 no rank 12 290399 Arthrobacter sp. FB24 183 species 1 0 Arthrobacter sp. Rue61a 1118963 1 species 162 0 1357915 Arthrobacter sp. QXT-31 0 species 254 1 1 species 249 0 Arthrobacter sp. U41 1849032 0 1 species 376 Arthrobacter sp. ERGS1:01 1704044 1 181 species 0 Arthrobacter sp. ATCC 21022 1771959 1 252 species 0 Arthrobacter sp. PAMC 25486 1494608 Arthrobacter sp. LS16 1690248 1 218 species 0 Arthrobacter sp. ZXY-2 1806905 0 1 187 species 2020486 Arthrobacter sp. YN 180 species 1 0 2079227 Arthrobacter sp. PGP41 species 791 1 0 Arthrobacter sp. YC-RL1 1652545 0 1 197 species Arthrobacter crystallopoietes 37928 0 1 species 285 0 2 genus 343 32207 species 205 1 0 43675 Rothia mucilaginosa 0 1 138 species Rothia dentocariosa 2047 1742993 Pseudarthrobacter 747 genus 4 7 1 0 121292 Pseudarthrobacter sulfonivorans 0 species 216 1 0 316 species 1 361575 Pseudarthrobacter phenanthrenivorans 1 208 species 0 Pseudarthrobacter chlorophenolicus 85085 2078575 0 1 genus 172 Arthrobacter sp. IHBB 11108 1618207 1 172 species 0 152 genus 1 0 1868332 0 1 152 species Neomicrococcus aestuarii 556325 genus 210 1 0 1269 210 species 1 0 1270 Micrococcus luteus 226 genus 1 0 1742992 0 species 226 1 43663 Paenarthrobacter aurescens 1742989 Glutamicibacter 293 genus 2 1 6 0 species 287 1 0 256701 Glutamicibacter arilaitensis 57493 Kocuria 1 4 genus 718 4 0 0 1 species 261 Kocuria flava 446860 Kocuria rhizophila 72000 1 species 192 0 71999 Kocuria palustris 0 261 species 1 1645 genus 141 1 0 141 species 1 0 1646 Renibacterium salmoninarum Glycomycetales 85014 0 4 458 order 4 1 0 28 1 family 454 3 85034 Glycomycetaceae Stackebrandtia 283810 0 1 1 2 426 genus species 425 1 0 283811 Stackebrandtia nassauensis 85012 Streptosporangiales 3928 order 16 1 32 0 Nocardiopsaceae 83676 7 1585 family 6 1 0 2013 Nocardiopsis 0 1 7 genus 1419 4 Nocardiopsis gilva 280236 0 1 447 species Nocardiopsis alba 53437 0 1 308 species 0 1 657 species Nocardiopsis dassonvillei 2014 1 1 160 genus 2 0 83677 Thermobifida Thermobifida fusca 2021 1 species 159 0 0 1 3 3 404 family Thermomonosporaceae 2012 0 1 1 genus 401 2 2019 Thermomonospora Thermomonospora curvata 2020 0 1 species 400 Streptosporangiaceae 2004 0 16 1 5 1907 family 83681 Nonomuraea 6 1 genus 1065 2 0 0 1 no rank 1059 2593643 Nonomuraea sp. ATCC 55076 1909395 0 1 1059 species 3 1 genus 826 2 0 2000 Streptosporangium Streptosporangium roseum 2001 1 species 823 0 1643683 257 order 3 0 0 1 1 257 family 3 85032 Acidothermaceae 28048 Acidothermus genus 256 2 9 1 0 0 1 species 247 Acidothermus cellulolyticus 28049 414714 Catenulisporales 0 2430 order 4 4 1 414877 Catenulisporaceae 2426 family 3 1 26 0 0 8 1 genus 2400 2 414878 Catenulispora Catenulispora acidiphila 304895 0 1 species 2392 0 16546 order 42 31 1 85010 Pseudonocardiales Pseudonocardiaceae 2070 106 1 41 family 16515 0 Alloactinosynnema 674734 1 1 2 genus 482 0 2636053 1 481 no rank 0 1 species 481 0 Alloactinosynnema sp. L-07 1653480 0 genus 408 2 1 1 142577 Prauserella 530584 Prauserella marina 407 species 1 0 Kibdelosporangium 2029 1 2 2 genus 647 0 860235 Kibdelosporangium phytohabitans 0 645 species 1 40566 Actinosynnema genus 1428 3 14 1 0 Actinosynnema pretiosum 42197 1 species 709 0 1 species 705 0 Actinosynnema mirum 40567 0 45 1 genus 2620 6 65496 Actinoalloteichus 1612552 Actinoalloteichus sp. ADI127-7 737 species 1 0 1 species 308 0 Actinoalloteichus hymeniacidonis 340345 0 2 1011 no rank 2644606 0 553 species 1 1612551 Actinoalloteichus sp. GBA129-24 Actinoalloteichus sp. AHMU CJ021 2072503 1 species 458 0 1470176 Actinoalloteichus hoggarensis 519 species 1 0 2 genus 728 3 1 0 Saccharothrix 2071 Saccharothrix espanaensis 103731 0 1 species 725 Saccharomonospora 1851 2 1 2 genus 281 0 1 279 species 0 Saccharomonospora viridis 1852 662 genus 2 3 1 0 165301 Lentzea Lentzea guizhouensis 1586287 1 659 species 0 0 555 genus 2 1 6 43356 Kutzneria 0 species 549 1 43357 Kutzneria albida 1847 Pseudonocardia 0 53 1 genus 4067 8 0 6 3335 no rank 2619320 1096856 Pseudonocardia sp. EC080619-01 species 512 1 0 Pseudonocardia sp. EC080610-09 1688404 0 1 560 species 0 517 species 1 1096868 Pseudonocardia sp. EC080625-04 Pseudonocardia sp. HH130629-09 1641402 0 1 species 483 1 626 species 0 Pseudonocardia sp. HH130630-07 1690815 445576 Pseudonocardia sp. AL041005-10 0 637 species 1 0 679 species 1 240495 Pseudonocardia dioxanivorans 7 genus 3898 38 1 0 Amycolatopsis 1813 1814 Amycolatopsis methanolica 0 504 species 1 0 1 species 1095 Amycolatopsis orientalis 31958 0 2 1007 no rank 2618356 Amycolatopsis sp. AA4 1896961 1 species 478 0 Amycolatopsis sp. BJA-103 1911175 1 529 species 0 0 1 species 723 Amycolatopsis mediterranei 33910 Amycolatopsis japonica 208439 1 species 531 0 Saccharopolyspora 1835 2 633 genus 1 3 0 630 species 1 0 1836 Saccharopolyspora erythraea 23 1 12 order 6745 0 Candidatus Nanopelagicales 2039638 2162846 0 11 6722 family 0 29 1 genus 3420 7 622681 Candidatus Planktophila Candidatus Planktophila versatilis 1884905 0 1 625 species 1884907 Candidatus Planktophila vernalis 0 species 619 1 573600 Candidatus Planktophila limnetica 0 676 species 1 species 286 1 0 1884904 Candidatus Planktophila sulfonica Candidatus Planktophila lacus 1884913 0 1 species 571 0 1 614 species Candidatus Planktophila dulcis 1884914 0 1 10 genus 3302 4 2039639 Candidatus Nanopelagicus Candidatus Nanopelagicus abundans 1884916 0 1 species 1232 1884634 Candidatus Nanopelagicus limnes species 1099 1 0 1884915 Candidatus Nanopelagicus hibericus 961 species 1 0 85008 Micromonosporales 6 1 order 6961 19 0 Micromonosporaceae 28056 1 94 18 6955 family 0 Micromonospora 1873 0 4 1505 genus 9 1 species 562 1 0 47850 Micromonospora aurantiaca 0 no rank 515 1 2617518 Micromonospora sp. L5 648999 0 1 515 species 1003110 Verrucosispora maris 0 species 419 1 Actinoplanes 1865 0 21 1 6 3010 genus 1845 no rank 3 0 2626549 0 species 621 1 2033844 Actinoplanes sp. SE50 134676 Actinoplanes sp. SE50/110 0 621 species 1 0 species 603 1 649831 Actinoplanes sp. N902-109 Actinoplanes missouriensis 1866 0 1 species 621 0 523 species 1 196914 Actinoplanes friuliensis 0 4 1683 genus 16 1 Plantactinospora 673534 2631981 0 3 1667 no rank 1 519 species 0 Plantactinospora sp. BC1 2108470 0 1 species 610 Plantactinospora sp. KBS50 2024580 0 1 538 species Plantactinospora sp. BB1 2071627 0 15 1 3 genus 663 Salinispora 168694 Salinispora arenicola 168697 0 1 species 337 Salinispora tropica 168695 0 1 species 311 52018 0 600 no rank 1 1650658 Actinobacteria bacterium IMCC26256 0 600 species 1 1 27 7 3604 order 0 Frankiales 85013 0 6 family 3577 1 24 Frankiaceae 74712 1854 Frankia genus 3553 5 28 1 0 Frankia inefficax 298654 0 1 species 639 Frankia alni 1859 0 1 species 1610 1 597 species 0 Frankia casuarinae 106370 2632575 0 no rank 679 1 1 species 679 0 Frankia sp. EAN1pec 298653 1643682 Geodermatophilales order 1368 8 11 1 0 85030 Geodermatophilaceae 38 1 1357 family 7 0 88138 Modestobacter 0 genus 469 2 1 1 1 species 468 0 Modestobacter marinus 477641 38501 Blastococcus 6 1 genus 418 2 0 138336 Blastococcus saxobsidens 412 species 1 0 2 genus 432 3 1 0 Geodermatophilus 1860 1 429 species 0 Geodermatophilus obscurus 1861 622450 Actinopolysporales 0 254 order 4 3 1 Actinopolysporaceae 622451 3 1 3 251 family 0 0 1 1 248 genus 2 1849 Actinopolyspora 1 247 species 0 Actinopolyspora erythraea 414996 85007 Corynebacteriales 0 217 1 order 46622 161 Tsukamurellaceae 85028 1 5 4 896 family 0 0 1 9 891 genus 3 2060 Tsukamurella 1 551 species 0 Tsukamurella tyrosinosolvens 57704 species 331 1 0 2061 Tsukamurella paurometabola 697024 138 no rank 1 0 0 1 genus 138 1847725 Lawsonella clevelandensis 1528099 0 1 138 species family 604 4 1 1 0 85029 Dietziaceae Dietzia 37914 3 1 3 603 genus 0 no rank 402 1 0 2617939 0 402 species 1 712270 Dietzia sp. oral taxon 368 0 198 species 1 499555 Dietzia timorensis 1762 Mycobacteriaceae 20254 family 56 39 1 0 0 1 genus 222 697025 0 1 species 222 Hoyosella subflava 639313 670516 0 genus 3706 5 206 species 1 0 1578165 Mycobacterium saopaulense 0 species 232 1 1774 Mycobacterium chelonae 335 species 1 0 83262 Mycobacterium immunogenum 1 species 192 0 Mycobacterium stephanolepidis 1520670 Mycobacterium abscessus 36809 0 1 species 2741 0 genus 11045 34 1 489 1763 Mycobacterium 0 species group 953 4 77643 1773 Mycobacterium tuberculosis 0 777 species 3 286 1 33894 Mycobacterium africanum 240 biotype 1 0 1765 Mycobacterium bovis 0 biotype 251 1 176 species 1 0 78331 Mycobacterium canettii 0 246 species 1 261524 Mycobacterium liflandii Mycobacterium marinum 1781 0 1 species 531 29311 Mycobacterium haemophilum species 172 1 0 2642494 0 13 3796 no rank 0 1 species 456 Mycobacterium sp. JS623 212767 Mycobacterium sp. YC-RL4 1682113 1 318 species 0 Mycobacterium sp. WY10 1920667 0 1 299 species 0 1 383 species Mycobacterium sp. djl-10 1879023 1 species 269 0 Mycobacterium sp. EPa45 1545728 Mycobacterium sp. MCS 164756 1 species 316 0 1 357 species 0 Mycobacterium sp. JLS 164757 0 1 species 291 Mycobacterium sp. NRRL B-3805 1570328 0 1 species 332 Mycobacterium sp. KMS 189918 Mycobacterium sp. MOTT36Y 1168287 0 1 121 species 1273687 Mycobacterium sp. VKM Ac-1817D 0 species 218 1 2051552 Mycobacterium sp. PYR15 species 302 1 0 134 species 1 0 1561223 Mycobacterium sp. QIA-37 species 84 1 0 1769 Mycobacterium leprae species 291 1 0 1768 Mycobacterium kansasii 120793 8 3518 species group 0 1138383 Mycobacterium paraintracellulare 96 species 1 0 0 1 270 species Mycobacterium colombiense 339268 0 1 189 species Mycobacterium marseillense 701042 1767 Mycobacterium intracellulare 806 species 4 178 1 0 1 subspecies 157 0 Mycobacterium yongonense 1203599 Mycobacterium chimaera 222805 0 1 subspecies 373 35617 Mycobacterium indicus pranii 0 subspecies 98 1 0 2157 species 1 1764 Mycobacterium avium 1 species 417 0 Mycobacterium dioxanotrophicus 482462 273 species 1 0 1809 Mycobacterium ulcerans 2249310 0 1 275 species group 0 1 species 275 Mycobacterium shigaense 722731 0 genus 590 2 1073531 1788 Mycobacterium terrae 0 species 302 1 Mycobacterium sinense 875328 0 1 288 species 1866885 0 13 genus 4652 Mycobacterium gilvum 1804 1 685 species 0 758802 Mycobacterium litorale 244 species 1 0 Mycobacterium rhodesiae 36814 1 297 species 0 1 species 203 0 Mycobacterium fortuitum 1766 1795 Mycobacterium neoaurum 0 291 species 1 134601 Mycobacterium goodii 360 species 1 0 1 367 species 0 Mycobacterium smegmatis 1772 1810 Mycobacterium vaccae 0 402 species 1 0 360 species 1 110539 Mycobacterium vanbaalenii 1797 Mycobacterium thermoresistibile 0 262 species 1 Mycobacterium chubuense 1800 0 1 396 species Mycobacterium aurum 1791 0 1 species 387 1771 Mycobacterium phlei 0 398 species 1 0 52 family 9972 24 1 Corynebacteriaceae 1653 0 9948 genus 51 1 144 1716 Corynebacterium 1 species 160 0 Corynebacterium casei 160386 species 138 1 0 146827 Corynebacterium simulans 152794 Corynebacterium efficiens 0 143 species 1 0 1 182 species Corynebacterium testudinoris 136857 143 species 1 0 65058 Corynebacterium ulcerans 349751 Corynebacterium marinum 0 species 225 1 1718 Corynebacterium glutamicum 0 species 464 1 0 1 species 219 Corynebacterium cystitidis 35757 92706 [Brevibacterium] flavum 0 species 182 1 1 104 species 0 Corynebacterium flavescens 28028 267 species 1 0 43770 Corynebacterium striatum 1 species 90 0 Corynebacterium epidermidicanis 1050174 species 144 1 0 43771 Corynebacterium urealyticum Corynebacterium sphenisci 191493 1 species 227 0 575200 Corynebacterium maris 233 species 1 0 1 104 species 0 Corynebacterium singulare 161899 Corynebacterium resistens 258224 1 species 135 0 42817 Corynebacterium argentoratense 173 species 1 0 89154 Corynebacterium terpenotabidum species 205 1 0 0 1 98 species Corynebacterium kroppenstedtii 161879 1 species 140 0 Corynebacterium glyciniphilum 1404244 Corynebacterium imitans 156978 1 species 144 0 species 147 1 0 571915 Corynebacterium mustelae 0 1 species 243 Corynebacterium humireducens 1223514 1230998 Corynebacterium frankenforstense 0 263 species 1 1697 Corynebacterium ammoniagenes 0 119 species 1 1072256 Corynebacterium uterequi 1107 species 1 0 1 164 species 0 Corynebacterium callunae 1721 1 species 134 0 Corynebacterium stationis 1705 Corynebacterium falsenii 108486 1 189 species 0 0 1 190 species Corynebacterium crudilactis 1652495 0 1 species 123 Corynebacterium lactis 1231000 106 species 1 0 161896 Corynebacterium camporealensis Corynebacterium variabile 1727 0 1 species 254 168 species 1 0 1121358 Corynebacterium doosanense 196 species 1 0 38289 Corynebacterium jeikeium 191610 Corynebacterium atypicum 94 species 1 0 Corynebacterium pseudotuberculosis 1719 0 1 223 species Corynebacterium diphtheriae 1717 1 species 240 0 Corynebacterium ureicelerivorans 401472 1 species 134 0 187491 Corynebacterium glaucum 138 species 1 0 0 215 no rank 2 2624378 Corynebacterium sp. NML98-0116 702967 0 1 152 species Corynebacterium sp. ATCC 6931 1487956 1 species 63 0 0 species 124 1 161895 Corynebacterium phocae 38305 Corynebacterium vitaeruminis species 282 1 0 169292 Corynebacterium aurimucosum 143 species 1 0 species 165 1 0 1408191 Corynebacterium deserti Corynebacterium aquilae 203263 0 1 species 189 0 species 239 1 225326 Corynebacterium halotolerans 35755 Corynebacterium kutscheri 295 species 1 0 85026 Gordoniaceae 0 family 2141 9 1 7 2053 Gordonia 2134 genus 8 23 1 0 0 species 288 1 1136941 Gordonia phthalatica 0 species 344 1 2054 Gordonia bronchialis species 297 1 0 2055 Gordonia terrae 2 no rank 555 0 2657482 337191 Gordonia sp. KTR9 0 species 303 1 0 252 species 1 2059875 Gordonia sp. YC-JH1 84595 Gordonia polyisoprenivorans 0 334 species 1 Gordonia iterans 1004901 0 1 293 species Nocardiaceae 85025 31 12195 family 72 1 0 0 8675 genus 23 222 1 1827 Rhodococcus 0 1 244 species Rhodococcus qingshengii 334542 37919 Rhodococcus opacus 0 species 1478 1 0 species 484 1 1833 Rhodococcus erythropolis 1 species 464 0 Rhodococcus aetherivorans 191292 1 species 332 0 Rhodococcus hoagii 43767 Rhodococcus rhodochrous 1829 1 species 329 0 12 3290 no rank 0 192944 Rhodococcus sp. MTM3W5.2 1805827 0 1 species 407 1723645 Rhodococcus sp. 008 species 208 1 0 Rhodococcus sp. PBTS 2 1653479 1 species 244 0 0 305 species 1 1653478 Rhodococcus sp. PBTS 1 Rhodococcus sp. BH4 1807790 0 1 species 194 1033922 Rhodococcus sp. WB1 species 496 1 0 1 315 species 0 Rhodococcus sp. p52 935199 1 233 species 0 Rhodococcus sp. YL-1 1045808 1570939 Rhodococcus sp. 2G 0 species 278 1 Rhodococcus sp. B7740 1564114 1 species 226 0 1727214 Rhodococcus sp. H-CA8f 219 species 1 0 679318 Rhodococcus sp. WMMA185 0 165 species 1 0 1 species 530 Rhodococcus jostii 132919 Rhodococcus fascians 1828 1 species 367 0 394 species 1 0 103816 Rhodococcus pyridinivorans 1 541 species 0 Rhodococcus ruber 1830 1817 Nocardia genus 3448 7 1 24 0 37329 Nocardia farcinica 0 species 523 1 502 species 1 0 455432 Nocardia terpenica 424 species 1 0 37332 Nocardia seriolae 0 1 species 680 Nocardia cyriacigeorgica 135487 37326 Nocardia brasiliensis 912 species 1 0 Nocardia nova 37330 1 383 species 0 2 1 205 family 3 0 316606 Segniliparaceae 1 5 genus 203 2 0 286801 Segniliparus 286802 Segniliparus rotundus species 198 1 0 Bifidobacteriales 85004 25 order 4383 17 1 0 0 1 45 family 4366 24 31953 Bifidobacteriaceae 3227 genus 19 39 1 0 1678 Bifidobacterium 35760 Bifidobacterium choerinum 0 223 species 1 0 2 229 species 91 1 Bifidobacterium catenulatum 1686 138 subspecies 1 0 630129 Bifidobacterium kashiwanohense Bifidobacterium animalis 28025 1 species 200 0 Bifidobacterium actinocoloniiforme 638619 1 species 233 0 1681 Bifidobacterium bifidum 190 species 1 0 species 128 1 0 1680 Bifidobacterium adolescentis 0 species 141 1 1683 Bifidobacterium angulatum 0 1 103 species Bifidobacterium indicum 1691 Bifidobacterium longum 216816 1 species 441 0 0 species 142 1 1684 Bifidobacterium asteroides 0 123 species 1 1689 Bifidobacterium dentium 0 species 105 1 28026 Bifidobacterium pseudocatenulatum 0 1 202 species Bifidobacterium scardovii 158787 Bifidobacterium pseudolongum 1694 1 197 species 0 0 334 species 1 1685 Bifidobacterium breve 0 104 species 1 33905 Bifidobacterium thermophilum 93 species 1 0 1687 Bifidobacterium coryneforme 0 genus 100 1 196082 Parascardovia denticolens 78258 1 100 species 0 196081 176 genus 1 0 78259 Scardovia inopinata species 176 1 0 0 genus 818 2 2 1 2701 Gardnerella 1 species 816 0 Gardnerella vaginalis 2702 1643684 Nakamurellales 0 365 order 4 1 1 1 1 364 family 3 0 85031 Nakamurellaceae Nakamurella 53460 2 genus 363 4 1 0 0 species 359 1 53461 Nakamurella multipartita 1643818 2 no rank 301 0 0 1 8 genus 301 2 147067 Thermobispora 1 293 species 0 Thermobispora bispora 2006 2037 17 order 2698 0 0 17 family 2698 57 1 Actinomycetaceae 2049 2 genus 192 1 5 0 Trueperella 1069494 0 species 187 1 1661 Trueperella pyogenes 0 126 genus 1 2529408 52773 Actinomyces meyeri species 126 1 0 1654 Actinomyces 0 1859 genus 9 58 1 1 100 species 0 Actinomyces pacaensis 1852377 1 182 species 0 Actinomyces gaoshouyii 1960083 1 species 188 0 Actinomyces oris 544580 0 1 117 species Actinomyces sp. VUL4_3 1912795 1 species 398 0 Actinomyces radicidentis 111015 2609248 0 3 816 no rank 251 species 1 0 1851395 Actinomyces sp. Chiba101 Actinomyces sp. oral taxon 414 712122 0 1 352 species 2081702 Actinomyces sp. oral taxon 897 0 species 213 1 1 genus 176 0 2050 2051 Mobiluncus curtisii 0 176 species 1 1653174 0 1 genus 128 59505 Actinotignum schaalii species 128 1 0 Arcanobacterium 28263 2 genus 160 3 1 0 Arcanobacterium haemolyticum 28264 0 1 species 157 Streptomycetales 85011 0 100 1 82 order 66729 0 family 66629 81 1 203 2062 Streptomycetaceae Streptomyces 1883 0 75 62116 genus 940 1 0 1 540 species Streptomyces sp. S10(2016) 1783515 1889 Streptomyces ambofaciens species 731 1 0 0 865 species 1 1642299 Streptomyces alfalfae 1 species 1370 0 Streptomyces venezuelae 54571 1907 Streptomyces glaucescens 0 527 species 1 0 1 3496 species Streptomyces albulus 68570 0 species 710 1 68280 Streptomyces violaceusniger 554 species 1 0 1038928 Streptomyces xinghaiensis 193462 Streptomyces niveus 620 species 1 0 1049 species 1 0 1915 Streptomyces lincolnensis species 1626 1 0 47763 Streptomyces lydicus Streptomyces gilvosporeus 553510 1 851 species 0 0 753 species 1 1926 Streptomyces reticuli Streptomyces cyaneogriseus 68192 0 1 species 549 1 species 442 0 Streptomyces peucetius 1950 Streptomyces albus 1888 1 1506 species 0 Streptomyces griseochromogenes 68214 1 species 697 0 Streptomyces scabiei 1930 1 805 species 0 1940 Streptomyces albireticuli 0 species 624 1 0 831 species 1 67267 Streptomyces alboflavus Streptomyces vietnamensis 362257 0 1 823 species 2593676 24 no rank 17327 0 1 species 858 0 Streptomyces sp. Sge12 1972846 Streptomyces sp. WAC00288 2094021 1 species 571 0 1081 species 1 0 1964449 Streptomyces sp. 3211 862751 Streptomyces sp. SirexAA-E 537 species 1 0 0 1 species 586 Streptomyces sp. CCM_MD2014 1561022 Streptomyces sp. RTd22 1841249 1 621 species 0 Streptomyces sp. CLI2509 1984801 0 1 species 739 841 species 1 0 2135430 Streptomyces sp. P3 Streptomyces sp. S8 1837283 1 483 species 0 0 species 1120 1 1849967 Streptomyces sp. SAT1 1661694 Streptomyces sp. Tue 6075 0 species 587 1 Streptomyces sp. M56 1495638 1 1103 species 0 Streptomyces sp. fd1-xmd 1812480 0 1 species 679 0 1 565 species Streptomyces sp. CFMR 7 1649184 0 608 species 1 1961713 Streptomyces sp. MOE7 1265601 Streptomyces sp. PAMC 26508 476 species 1 0 0 species 800 1 2059884 Streptomyces sp. CMB-StM0423 783 species 1 0 1262452 Streptomyces sp. 769 1 species 805 0 Streptomyces sp. Mg1 465541 234612 Streptomyces sp. TN58 0 603 species 1 0 1 817 species Streptomyces sp. FR-008 206662 0 541 species 1 1751294 Streptomyces sp. 4F 444103 Streptomyces sp. CNQ-509 species 742 1 0 0 species 781 1 1725411 Streptomyces sp. CdTB01 species 626 1 0 1916 Streptomyces lividans 1912 Streptomyces hygroscopicus species 1719 1 0 33903 Streptomyces avermitilis 801 species 1 0 Streptomyces chartreusis 1969 1 475 species 0 75293 Streptomyces autolyticus 0 2505 species 1 0 1 1389 species Streptomyces pactum 68249 1219 species 1 0 379067 Streptomyces bingchenggensis 0 1 species 509 Streptomyces pluripotens 1355015 794 species 1 0 1914 Streptomyces lavendulae 1 species 1049 0 Streptomyces formicae 1616117 2049881 Streptomyces sp. XZHG99 520 species 1 0 1 706 species 0 Streptomyces noursei 1971 1 species 584 0 Streptomyces clavuligerus 1901 555 species 1 0 29303 Streptomyces cattleya 164348 Streptomyces puniciscabiei 589 species 1 0 1 812 species 0 Streptomyces malaysiensis 92644 Streptomyces parvulus 146923 1 species 537 0 Streptomyces pristinaespiralis 38300 1 species 531 0 481 species 1 0 408015 Streptomyces xiamenensis 1477431 2 species group 2955 0 Streptomyces coelicolor 1902 0 1 2338 species 0 1 species 617 Streptomyces sampsonii 42239 Streptomyces pratensis 1169025 0 1 490 species 2 1129 species group 0 629295 610 species subgroup 1 0 1482558 Streptomyces globisporus 1908 1 species 610 0 0 1 519 species subgroup 1482596 0 1 519 species Streptomyces griseus 1911 1935 Streptomyces violaceoruber 0 501 species 1 0 578 species 1 42684 Streptomyces collinus Streptomyces rubrolavendulae 285473 0 1 672 species 1437453 Streptomyces leeuwenhoekii 572 species 1 0 68202 Streptomyces fulvissimus species 582 1 0 Kitasatospora 2063 0 19 1 5 genus 4310 Kitasatospora setae 2066 0 1 1047 species 2633591 1 no rank 740 0 2018025 Kitasatospora sp. MMS16-BH015 species 740 1 0 Kitasatospora aureofaciens 1894 0 1 species 554 68173 Kitasatospora albolonga 1950 species 1 0 Kineosporiales 622452 1 3 3 order 595 0 0 1 9 592 family 2 83778 Kineosporiaceae 33981 0 genus 583 1 0 1 583 species Kineococcus radiotolerans 131568 85009 Propionibacteriales 0 1 55 6416 order 33 0 3166 family 13 27 1 85015 Nocardioidaceae 2044 Pimelobacter 0 4 1 genus 581 2 species 577 1 0 2045 Pimelobacter simplex Aeromicrobium 2040 0 2 genus 433 1 3 0 1 430 species Aeromicrobium erythreum 2041 Kribbella 182639 0 32 1 2 490 genus 458 species 1 0 182640 Kribbella flavida 0 47 1 genus 1340 4 1839 Nocardioides 1 species 306 0 Nocardioides sp. 78 2045452 1 no rank 502 0 2615069 Nocardioides sp. JS614 196162 1 species 502 0 0 1 species 485 Nocardioides dokdonensis 450734 116071 Micropruina genus 295 2 1 6 0 1 289 species 0 Micropruina glycogenica 75385 Propionibacteriaceae 31957 0 19 3195 family 32 1 2801844 0 198 genus 1 0 1 species 198 Pseudopropionibacterium propionicum 1750 Cutibacterium 1912216 0 4 551 genus 9 1 1747 Cutibacterium acnes species 162 1 0 0 1 183 species Cutibacterium avidum 33010 0 197 species 1 33011 Cutibacterium granulosum 203133 1 genus 194 0 2633994 1 no rank 194 0 194 species 1 0 1871034 Propionimicrobium sp. Marseille-P3275 1 1 genus 512 3 0 1743 Propionibacterium 2608905 93 no rank 1 0 671223 Propionibacterium sp. oral taxon 193 0 93 species 1 0 1 species 418 Propionibacterium freudenreichii 1744 1 4 333 genus 2 0 1912215 Acidipropionibacterium 1 species 329 0 Acidipropionibacterium acidipropionici 1748 29404 Microlunatus 1 4 genus 327 2 0 Microlunatus phosphovorus 29405 1 323 species 0 72763 Tessaracoccus genus 1048 5 1 11 0 342 species 1 0 1332264 Tessaracoccus aquimaris 0 species 232 1 399497 Tessaracoccus flavescens 1610493 Tessaracoccus flavus 0 species 198 1 2635419 1 265 no rank 0 1909732 Tessaracoccus sp. T2.5-30 species 265 1 0 1752188 1697 no rank 4 0 1 475 species 0 Actinobacteria bacterium IMCC26103 1848756 0 species 285 1 1848255 Actinobacteria bacterium IMCC25003 Actinobacteria bacterium IMCC19121 1848754 0 1 618 species Actinobacteria bacterium IMCC26077 1848755 0 1 319 species 1859062 no rank 293 2 0 2 293 genus 5 1 0 Thermobaculum 262406 1 288 species 0 Thermobaculum terrenum 166501 540300 phylum 700 1 176 0 1239 Firmicutes 909932 Negativicutes 0 7912 class 29 1 13 5 order 413 3 1 0 Acidaminococcales 1843488 909930 Acidaminococcaceae 0 1 5 family 410 4 3 405 genus 9 1 0 Acidaminococcus 904 Acidaminococcus fermentans 905 1 species 200 0 species 196 1 0 187327 Acidaminococcus intestini Veillonellales 1843489 9 order 2460 15 1 0 31977 Veillonellaceae 0 family 2445 8 1 19 906 Megasphaera 0 303 genus 2 2 1 Megasphaera elsdenii 907 0 1 301 species 0 1 genus 195 909928 Negativicoccus massiliensis 1702287 0 1 species 195 1 genus 760 0 39948 39950 Dialister pneumosintes 0 760 species 1 0 4 1 3 1168 genus Veillonella 29465 0 1 species 895 Veillonella parvula 29466 Veillonella rodentium 248315 0 1 species 269 0 14 5026 order 1 25 Selenomonadales 909929 1 5 2219 family 9 0 1843491 Selenomonadaceae 970 Selenomonas 0 genus 1053 6 1 44 971 Selenomonas ruminantium species 297 1 0 69823 Selenomonas sputigena 0 species 251 1 0 3 no rank 461 2637378 species 126 1 0 712538 Selenomonas sp. oral taxon 478 713030 Selenomonas sp. oral taxon 136 0 193 species 1 species 142 1 0 1884263 Selenomonas sp. oral taxon 920 158846 Megamonas 0 2 1 genus 1161 2 species 1159 1 0 158847 Megamonas hypermegale 1843490 Sporomusaceae 0 2782 family 4 1 12 365348 Pelosinus 0 7 1 genus 2770 3 0 1397 no rank 1 2629460 0 1 1397 species Pelosinus sp. UFO1 484770 0 1366 species 1 365349 Pelosinus fermentans 1 212 no rank 0 33974 genus 212 1 0 1930845 0 species 212 1 1871025 Ndongobacter massiliensis Limnochordia 1676648 0 1 1 5 class 250 1676649 Limnochordales order 249 4 5 1 0 244 family 3 1 1 0 1676650 Limnochordaceae 2 genus 243 1 27 0 Limnochorda 1676651 0 216 species 1 1555112 Limnochorda pilosa 0 1 271 427 312142 class Bacilli 91061 Bacillales 1385 417 1 261 order 213338 0 186823 Alicyclobacillaceae 1484 family 8 1 8 0 0 516 genus 3 8 1 432330 Tumebacillus species 195 1 0 1214604 Tumebacillus algifaecis 313 species 1 0 1903704 Tumebacillus avium genus 669 3 1 1 0 1129704 Kyrpidia 0 343 species 1 33943 Kyrpidia tusciae 0 species 325 1 2055160 Kyrpidia sp. EA-1 29330 0 genus 291 1 0 1 291 species Alicyclobacillus acidocaldarius 405212 no rank 2596 9 0 539002 539738 2 no rank 952 0 Gemella 1378 12 1 2 952 genus 0 2624949 1 940 no rank 0 1 species 940 0 Gemella sp. oral taxon 928 1785995 7 1644 no rank 0 539742 0 7 genus 1644 1 19 Exiguobacterium 33986 219 species 1 0 132920 Exiguobacterium antarcticum Exiguobacterium sibiricum 332410 0 1 258 species no rank 1148 4 0 2644629 Exiguobacterium sp. MH3 1399115 1 species 250 0 0 1 species 177 Exiguobacterium sp. AT1b 360911 Exiguobacterium sp. U13-1 1849031 0 1 334 species 1 387 species 0 Exiguobacterium sp. ZWU0009 1224749 1 87 40 47444 family 0 Staphylococcaceae 90964 Staphylococcus 1279 0 340 1 33 43890 genus 0 1 species 1192 Staphylococcus lugdunensis 28035 0 1 749 species Staphylococcus agnetis 985762 46127 Staphylococcus felis 891 species 1 0 1 species 946 0 Staphylococcus schleiferi 1295 0 1 species 1352 Staphylococcus hominis 1290 Staphylococcus hyicus 1284 0 1 species 753 1 species 1290 0 Staphylococcus capitis 29388 Staphylococcus equorum 246432 1 1764 species 0 0 species 1174 1 29384 Staphylococcus kloosii 214473 Staphylococcus nepalensis species 1308 1 0 Staphylococcus aureus 1280 0 1 species 4512 1288 Staphylococcus xylosus species 2133 1 0 0 species 1359 1 985002 Staphylococcus argenteus 0 1 no rank 1179 91994 Staphylococcus sp. AntiMn-1 1715860 0 1 1179 species 0 1 species 1217 Staphylococcus succinus 61015 species 722 1 0 70258 Staphylococcus piscifermentans Staphylococcus lutrae 155085 1 715 species 0 0 1 species 1338 Staphylococcus warneri 1292 Staphylococcus sciuri 1296 1 1613 species 0 0 1 species 822 Staphylococcus pseudintermedius 283734 0 1316 species 1 308354 Staphylococcus simiae 1381 species 1 0 643214 Staphylococcus stepanovicii species 2991 1 0 45972 Staphylococcus pasteuri 1 species 1255 0 Staphylococcus cohnii 29382 Staphylococcus saprophyticus 29385 1 species 1228 0 1286 Staphylococcus simulans 0 808 species 1 1 species 505 0 Staphylococcus pettenkoferi 170573 70255 Staphylococcus condimenti 1174 species 1 0 Staphylococcus carnosus 1281 1 species 1105 0 Staphylococcus epidermidis 1282 0 1 species 2566 0 species 587 1 1294 Staphylococcus muscae 1605 species 1 0 1283 Staphylococcus haemolyticus 0 1 247 genus 45669 species 247 1 0 407035 Salinicoccus halodurans 4 genus 2282 6 1 0 Macrococcus 69965 0 1 693 species Macrococcus caseolyticus 69966 0 1 513 species Macrococcus canis 1855823 1070 no rank 1 0 2619255 0 species 1070 1 1898474 Macrococcus sp. IME1552 genus 938 1 0 2005363 938 species 1 0 1849491 Auricoccus indicus 0 1 62 45 24915 family Paenibacillaceae 186822 Paenibacillus 44249 131 1 36 20927 genus 0 Paenibacillus sabinae 365617 1 192 species 0 Paenibacillus swuensis 1178515 0 1 339 species 412 species 1 0 160799 Paenibacillus borealis 355 species 1 0 1126833 Paenibacillus beijingensis 59893 Paenibacillus peoriae 0 species 855 1 189426 Paenibacillus odorifer 0 606 species 1 1 species 576 0 Paenibacillus bovis 1616788 Paenibacillus graminis 189425 1 species 709 0 1 species 1052 0 Paenibacillus donghaensis 414771 0 1 389 species group 2044880 1 species 389 0 Paenibacillus riograndensis 483937 185978 0 6462 no rank 13 1536775 Paenibacillus sp. FSL H7-0737 species 668 1 0 Paenibacillus sp. Y412MC10 481743 0 1 species 251 Paenibacillus sp. FSL R5-0912 1536771 1 species 383 0 1695218 Paenibacillus sp. 32O-W species 300 1 0 0 species 482 1 2069255 Paenibacillus sp. lzh-N1 Paenibacillus sp. FSL P4-0081 1536769 1 species 545 0 467 species 1 0 1536774 Paenibacillus sp. FSL H7-0357 1 species 285 0 Paenibacillus sp. JDR-2 324057 Paenibacillus sp. FSL R7-0273 1536772 0 1 species 358 1870819 Paenibacillus sp. BIHB4019 0 species 479 1 0 1 species 349 Paenibacillus sp. FSL R7-0331 1536773 1 species 1204 0 Paenibacillus sp. IHBB 10380 1566358 0 691 species 1 1536770 Paenibacillus sp. FSL R5-0345 Paenibacillus ihbetae 1870820 0 1 318 species 1 409 species 0 Paenibacillus kribbensis 172713 1462996 Paenibacillus yonginensis 0 277 species 1 0 1 673 species Paenibacillus durus 44251 0 265 species 1 162209 Paenibacillus naphthalenovorans 0 1 1050 species Paenibacillus mucilaginosus 61624 Paenibacillus crassostreae 1763538 0 1 species 772 1 3085 species 0 Paenibacillus polymyxa 1406 species 817 1 0 1464 Paenibacillus larvae 169760 Paenibacillus stellifer 215 species 1 0 0 477 species 1 159743 Paenibacillus terrae 528191 Paenibacillus xylanexedens species 491 1 0 55080 Brevibacillus 2751 genus 4 4 1 0 1393 Brevibacillus brevis 0 752 species 1 1465 Brevibacillus laterosporus 0 species 1513 1 54913 Brevibacillus formosus species 482 1 0 85151 3 no rank 891 0 Aneurinibacillus 55079 4 1 3 891 genus 0 Aneurinibacillus soli 1500254 0 1 species 446 2642329 0 441 no rank 1 1450761 Aneurinibacillus sp. XH2 0 species 441 1 0 genus 284 1 76632 Thermobacillus composti 377615 1 species 284 0 186820 Listeriaceae family 7787 9 1 9 0 0 genus 6934 6 65 1 1637 Listeria 0 species 2737 1 1639 Listeria monocytogenes Listeria seeligeri 1640 1 species 830 0 1643 Listeria welshimeri 0 1028 species 1 1642 Listeria innocua 860 species 1 0 0 1 species 1414 Listeria ivanovii 1638 3 1 2 genus 844 0 Brochothrix 2755 Brochothrix thermosphacta 2756 0 1 841 species 186821 0 307 family 1 no rank 307 1 0 663587 1 species 307 0 [Bacillus] selenitireducens 85683 1 1 4 221 family 0 Thermoactinomycetaceae 186824 292635 Laceyella 0 3 genus 1 Novibacillus 1677050 1 1 2 genus 217 0 1471761 Novibacillus thermophilus species 216 1 0 Bacillaceae 186817 192 1 118 112631 family 0 1386 Bacillus genus 71247 58 1414 1 0 1 species 460 0 Bacillus infantis 324767 Bacillus coagulans 1398 0 1 797 species 1 3449 species 0 Bacillus megaterium 1404 Bacillus beveridgei 632773 0 1 349 species 0 1 149 species Bacillus gibsonii 79881 1178537 Bacillus xiamenensis species 537 1 0 0 1 species 2766 Bacillus pumilus 1408 1 1384 species 0 Bacillus weihaiensis 1547283 653685 9 species group 7542 0 1452 Bacillus atrophaeus 0 species 665 1 1402 Bacillus licheniformis 0 597 species 1 Bacillus paralicheniformis 1648923 0 1 432 species 0 species 2997 1 1423 Bacillus subtilis 3 species subgroup 2309 0 1938374 659243 Bacillus siamensis 0 species 207 1 1 species 1121 0 Bacillus velezensis 492670 1390 Bacillus amyloliquefaciens 0 species 981 1 72361 Bacillus vallismortis 0 71 species 1 Bacillus sonorensis 119858 0 1 471 species 0 1 species group 652 1792192 1 652 species 0 Bacillus altitudinis 293387 0 1 species 486 Bacillus glycinifermentans 1664069 135735 Bacillus endophyticus 0 species 1671 1 Bacillus smithii 1479 1 562 species 0 86664 Bacillus flexus 0 species 1147 1 33932 Bacillus cohnii 1616 species 1 0 86661 0 10 34033 species group 658666 Bacillus bombysepticus 0 species 1172 1 580165 Bacillus cytotoxicus species 1036 1 0 0 1 944 species Bacillus toyonensis 155322 Bacillus anthracis 1392 0 1 1215 species no rank 3117 3 0 2750818 Bacillus sp. FDAARGOS_235 1839798 1 species 1340 0 species 873 1 0 2053832 Bacillus sp. HBCD-sjtu 1 904 species 0 Bacillus sp. ABP14 1892404 1428 Bacillus thuringiensis 10898 species 1 0 Bacillus cereus 1396 1 species 11555 0 4096 species 1 0 1405 Bacillus mycoides 1 762 species 0 Bacillus horikoshii 79883 412384 Bacillus aryabhattai 1127 species 1 0 Bacillus cellulosilyticus 1413 1 1274 species 0 19 6695 no rank 0 185979 1856406 Bacillus sp. H15-1 species 245 1 0 Bacillus sp. BH072 1570330 1 species 72 0 0 1 species 1032 Bacillus sp. IHB B 7164 1827146 Bacillus sp. JS 1127744 1 156 species 0 Bacillus sp. FJAT-14266 1837130 0 1 365 species 1 species 86 0 Bacillus sp. Lzh-5 2049935 1 species 585 0 Bacillus sp. WP8 756828 Bacillus sp. LM 4-2 1628753 0 1 species 142 Bacillus sp. YP1 1574141 1 species 146 0 1446792 Bacillus sp. Pc3 species 133 1 0 Bacillus sp. X1(2014) 1565991 1 species 1035 0 Bacillus sp. 1NLA3E 666686 0 1 species 1313 species 179 1 0 2009331 Bacillus sp. MD-5 1941347 Bacillus sp. 275 0 153 species 1 0 species 210 1 1774743 Bacillus sp. SDLI1 142 species 1 0 563169 Bacillus sp. SJ-10 Bacillus sp. OxB-1 98228 1 species 314 0 species 144 1 0 1409 Bacillus sp. (in: Bacteria) 2026248 Bacillus sp. 1s-1 0 species 243 1 species 1385 1 0 561879 Bacillus safensis 1471 Bacillus methanolicus 0 species 990 1 29331 Amphibacillus 0 1066 genus 2 1 4 0 1062 species 1 1449 Amphibacillus xylanus 0 63 1 5 genus 6631 Lysinibacillus 400634 0 1122 species 1 28031 Lysinibacillus fusiformis 0 1 species 3131 Lysinibacillus sphaericus 1421 0 1 1277 no rank 2636778 1 species 1277 0 Lysinibacillus sp. YS11 2072025 Lysinibacillus varians 1145276 0 1 species 1038 2 genus 2523 0 2675230 665099 Bacillus oceanisediminis 0 species 898 1 Bacillus kochii 859143 0 1 species 1625 0 5 genus 4789 2675234 Bacillus halodurans 86665 0 1 479 species 963 species 1 0 79880 Bacillus clausii Bacillus lehensis 300825 1 species 1024 0 Bacillus krulwichiae 199441 0 1 species 1405 0 species 918 1 79885 Bacillus pseudofirmus 2 1 2 953 genus 0 Aeribacillus 1055323 0 1 species 951 Aeribacillus pallidus 33936 175304 Lentibacillus 454 genus 2 3 1 0 Lentibacillus amyloliquefaciens 1472767 1 451 species 0 45667 Halobacillus 0 genus 1221 3 3 1 1570 Halobacillus halophilus 0 539 species 1 0 1 species 679 Halobacillus mangrovi 402384 129337 Geobacillus 0 159 1 genus 4295 15 1 species 419 0 Geobacillus thermodenitrificans 33940 Geobacillus stearothermophilus 1422 1 325 species 0 0 species group 1155 4 1505648 Geobacillus thermoleovorans 33941 0 1 species 599 Geobacillus lituanicus 169283 1 species 184 0 0 1 192 species Geobacillus thermocatenulatus 33938 180 species 1 0 1462 Geobacillus kaustophilus 6 no rank 1866 0 2642459 0 1 species 83 Geobacillus sp. Y412MC61 544556 0 1 species 776 Geobacillus sp. WCH70 471223 Geobacillus sp. Y4.1MC1 581103 1 species 544 0 1 species 271 0 Geobacillus sp. C56-T3 691437 1 species 98 0 Geobacillus sp. GHH01 1233873 94 species 1 0 550542 Geobacillus sp. Y412MC52 129338 Geobacillus subterraneus 0 species 172 1 1 199 species 0 Geobacillus genomosp. 3 1921421 0 2 genus 2481 2675229 1 species 579 0 Bacillus muralis 264697 1478 Bacillus simplex species 1902 1 0 0 1 490 genus 459532 0 species 490 1 586416 Terribacillus aidingensis 150247 Anoxybacillus genus 4121 6 1 51 0 0 2 1390 no rank 2639704 1 species 661 0 Anoxybacillus sp. B7M1 1490057 Anoxybacillus sp. B2M1 1490052 1 729 species 0 1 716 species 0 Anoxybacillus gonensis 198467 33934 Anoxybacillus flavithermus 1303 species 1 0 661 species 1 0 294699 Anoxybacillus amylolyticus Fictibacillus 1329200 0 1 4 3 genus 1556 Fictibacillus arsenicus 255247 1 763 species 0 789 species 1 0 1221500 Fictibacillus phosphorivorans 0 278 genus 1 351195 0 1 species 278 Salimicrobium jeotgali 1230341 84406 Virgibacillus 1 23 7103 genus 7 0 0 species 1241 1 163877 Virgibacillus necropolis 0 2425 no rank 2 2620237 1911587 Virgibacillus sp. 6R 0 1270 species 1 403957 Virgibacillus sp. SK37 0 species 1155 1 2017483 Virgibacillus phasianinus 0 1073 species 1 0 1274 species 1 1473 Virgibacillus pantothenticus 1482 Virgibacillus halodenitrificans 0 1067 species 1 genus 709 1 0 1906945 1426 Parageobacillus thermoglucosidasius species 709 1 0 Oceanobacillus 182709 0 2 2522 genus 3 1 182710 Oceanobacillus iheyensis 0 2519 species 1 26 15536 family 32 1 0 Planococcaceae 186818 Planococcus 1372 12 6735 genus 63 1 0 1 species 751 0 Planococcus donghaensis 414778 species 661 1 0 192421 Planococcus maritimus 1215089 Planococcus halocryophilus 849 species 1 0 1598147 Planococcus faecalis 845 species 1 0 161360 Planococcus antarcticus 477 species 1 0 2 1014 no rank 0 2662419 Planococcus sp. MB-3u-03 2058136 1 species 270 0 1526927 Planococcus sp. PAMC 21323 0 species 744 1 0 1 species 712 Planococcus kocurii 1374 1302659 Planococcus sp. L10.15 species 941 1 0 Planococcus rifietoensis 200991 1 species 266 0 1 156 species 0 Planococcus plakortidis 1038856 0 4 1 739 genus 2 157226 Jeotgalibacillus Jeotgalibacillus malaysiensis 1508404 1 735 species 0 3798 genus 5 1 29 0 1569 Sporosarcina 2647733 2 no rank 698 0 Sporosarcina sp. P33 1930764 0 1 species 350 0 species 348 1 1930546 Sporosarcina sp. P37 Sporosarcina ureae 1571 1 species 1879 0 1192 species 1 0 1476 Sporosarcina psychrophila 648800 Solibacillus genus 2250 3 1 31 0 0 1 1111 species Solibacillus silvestris 76853 2637870 0 1 no rank 1108 Solibacillus sp. R5-41 2048654 1 species 1108 0 1649 1 1095 genus 0 0 1 1095 no rank 2644826 1 species 1095 0 Kurthia sp. 11kri321 1750719 Rummeliibacillus 648802 3 1 2 genus 887 0 Rummeliibacillus stabekisii 241244 1 884 species 0 Lactobacillales 186826 165 order 98533 1 228 0 1 6 2615 family 8 0 186827 Aerococcaceae 0 7 genus 2609 31 1 Aerococcus 1375 Aerococcus urinae 1376 0 1 557 species 0 species 480 1 87541 Aerococcus christensenii 1 species 256 0 Aerococcus sanguinicola 119206 0 1 404 species Aerococcus viridans 1377 0 306 species 1 128944 Aerococcus urinaehominis species 575 1 0 51665 Aerococcus urinaeequi 50 1 family 32425 49 0 1300 Streptococcaceae Streptococcus 1301 0 210 1 43 26069 genus Streptococcus parauberis 1348 1 species 836 0 0 2262 species group 3 671232 0 species 1013 1 1328 Streptococcus anginosus Streptococcus constellatus 76860 0 1 species 444 0 1 805 species Streptococcus intermedius 1338 0 289 species 1 1305 Streptococcus sanguinis 1326 Streptococcus acidominimus species 298 1 0 Streptococcus merionis 400065 1 345 species 0 0 1 686 species Streptococcus iniae 1346 1 981 species 0 Streptococcus gordonii 1302 0 species 728 1 1349 Streptococcus uberis 1121 species 1 0 315405 Streptococcus gallolyticus 150055 Streptococcus lutetiensis species 454 1 0 2608887 0 7 2203 no rank 245 species 1 0 1759399 Streptococcus sp. A12 219 species 1 0 1156431 Streptococcus sp. I-G2 1 219 species 0 Streptococcus sp. I-P16 1156433 Streptococcus sp. 'group B' 1319 0 1 species 645 1 species 352 0 Streptococcus sp. FDAARGOS_192 1839799 Streptococcus sp. NPS 308 1902136 1 species 231 0 0 1 292 species Streptococcus sp. oral taxon 431 712633 0 species 894 1 1313 Streptococcus pneumoniae 82348 Streptococcus pluranimalium 0 species 389 1 Streptococcus halotolerans 1814128 0 1 species 352 species 846 1 0 1308 Streptococcus thermophilus 59310 Streptococcus macedonicus 548 species 1 0 species 1430 1 0 1307 Streptococcus suis 197614 Streptococcus pasteurianus species 490 1 0 1888195 Streptococcus himalayensis 341 species 1 0 1 315 species 0 Streptococcus pantholopis 1811193 0 species 261 1 45634 Streptococcus cristatus 0 1 407 species Streptococcus parasanguinis 1318 119603 0 2 species group 1350 1 species 842 0 Streptococcus equi 1336 1334 Streptococcus dysgalactiae 0 508 species 1 1 species 428 0 Streptococcus marmotae 1825069 257758 Streptococcus pseudopneumoniae species 333 1 0 Streptococcus oralis 1303 0 1 species 819 102684 Streptococcus infantarius 0 781 species 1 Streptococcus equinus 1335 0 1 350 species 1311 Streptococcus agalactiae 1391 species 1 0 Streptococcus pyogenes 1314 1 species 1102 0 0 1 1111 species Streptococcus salivarius 1304 0 1 851 species Streptococcus mitis 28037 species 867 1 0 1309 Streptococcus mutans 1357 Lactococcus 0 1 7 6306 genus 5 1 888 species 0 Lactococcus garvieae 1363 species 4310 1 0 1358 Lactococcus lactis Lactococcus piscium 1364 1 737 species 0 Lactococcus raffinolactis 1366 1 364 species 0 263855 0 1 no rank 789 1 789 species 0 Lactobacillales bacterium 1993866 Lactobacillaceae 33958 57 1 58 family 34829 0 2767879 0 4373 genus 6 Lactobacillus ginsenosidimutans 1007676 0 1 823 species Lactobacillus crustorum 392416 1 804 species 0 1847728 Lactobacillus allii 829 species 1 0 1602 Lactobacillus alimentarius 0 species 691 1 1 671 species 0 Lactobacillus farciminis 1612 0 1 species 555 Lactobacillus heilongjiangensis 1074467 2767881 0 genus 1491 2 0 1 species 866 Lactobacillus lindneri 53444 625 species 1 0 1625 Lactobacillus sanfranciscensis 2767893 0 3 genus 1104 Lactobacillus curieae 1138822 0 1 462 species Lactobacillus buchneri 1581 1 species 318 0 Lactobacillus parabuchneri 152331 0 1 species 324 0 266 genus 1 2767876 1603 Lactobacillus amylophilus species 266 1 0 3 1978 genus 0 2742598 1613 Lactobacillus fermentum 288 species 1 0 0 1 species 278 Lactobacillus mucosae 97478 1 1412 species 0 Lactobacillus reuteri 1598 1578 Lactobacillus 11252 genus 16 213 1 0 0 1 species 795 Lactobacillus amylovorus 1604 Lactobacillus jensenii 109790 1 720 species 0 Lactobacillus acidophilus 1579 1 743 species 0 Lactobacillus amylolyticus 83683 0 1 415 species 2620435 0 4 1596 no rank 1 284 species 0 Lactobacillus sp. D1501 2108362 1545702 Lactobacillus sp. wkB8 642 species 1 0 1 374 species 0 Lactobacillus sp. CBA3605 2099788 Lactobacillus sp. CBA3606 2099789 0 1 296 species 1 833 species 0 Lactobacillus delbrueckii 1584 Lactobacillus gasseri 1596 0 1 1511 species Lactobacillus kefiranofaciens 267818 0 1 species 521 0 1 species 1647 Lactobacillus johnsonii 33959 Lactobacillus gallinarum 52242 1 species 606 0 Lactobacillus helveticus 1587 1 species 1217 0 0 435 species 1 1600 Lactobacillus acetotolerans 2767886 717 genus 3 0 Lactobacillus zymae 267363 1 species 86 0 0 species 461 1 1580 Lactobacillus brevis 637971 Lactobacillus koreensis 0 170 species 1 645 genus 1 0 2767890 1 645 species 0 Lactobacillus hokkaidonensis 1193095 0 genus 1696 3 2759736 0 553 species 1 1597 Lactobacillus paracasei 0 1 677 species Lactobacillus casei 1582 1 species 466 0 Lactobacillus rhamnosus 47715 2767889 0 2 1022 genus 0 species 598 1 375175 Lactobacillus backii Lactobacillus coryniformis 1610 0 1 species 424 0 genus 2056 3 2767842 Lactobacillus pentosus 1589 0 1 species 286 species 1435 1 0 1590 Lactobacillus plantarum 0 1 species 335 Lactobacillus paraplantarum 60520 2767877 1 460 genus 0 1 species 460 0 Lactobacillus kunkeei 148814 0 4 genus 3122 2767887 1623 Lactobacillus ruminis 192 species 1 0 89059 Lactobacillus acidipiscis 454 species 1 0 Lactobacillus salivarius 1624 0 1 2162 species 0 1 314 species Lactobacillus agilis 1601 Pediococcus 1253 6 3014 genus 17 1 0 Pediococcus inopinatus 114090 0 1 497 species 51663 Pediococcus damnosus 0 562 species 1 0 718 species 1 187452 Pediococcus claussenii 0 1 908 species Pediococcus pentosaceus 1255 1670797 0 species group 312 1 1 312 species 0 Pediococcus acidilactici 1254 2767885 2 genus 1226 0 0 1 species 804 Lactobacillus sakei 1599 Lactobacillus curvatus 28038 0 1 422 species genus 350 1 0 2767892 240427 Lactobacillus paracollinoides 0 species 350 1 0 1 8 17 7535 family Leuconostocaceae 81850 0 6 2339 genus 8 1 Weissella 46255 1 276 species 0 Weissella cibaria 137591 1631871 Weissella jogaejeotgali 0 520 species 1 0 species 414 1 759620 Weissella ceti Weissella koreensis 165096 1 species 607 0 1 species 514 0 Weissella paramesenteroides 1249 0 537 genus 1 46254 0 1 species 537 Oenococcus oeni 1247 4651 genus 9 28 1 0 1243 Leuconostoc 1246 Leuconostoc lactis species 201 1 0 1252 Leuconostoc carnosum species 687 1 0 0 no rank 497 1 2685106 0 1 497 species Leuconostoc sp. C2 979982 1 species 1177 0 Leuconostoc mesenteroides 1245 0 185 species 1 255248 Leuconostoc garlicum 0 1 species 498 Leuconostoc kimchii 136609 Leuconostoc citreum 33964 0 1 species 415 1 species 963 0 Leuconostoc gelidum 1244 Carnobacteriaceae 186828 11 family 6828 1 27 0 0 2 1045 genus 5 1 Marinilactibacillus 191769 2632303 1040 no rank 1 0 1911586 Marinilactibacillus sp. 15R 0 species 1040 1 0 1 28 genus 4286 5 2747 Carnobacterium 0 1070 species 1 147709 Carnobacterium inhibens 0 1605 no rank 2 257487 208596 Carnobacterium sp. 17-4 species 965 1 0 1564681 Carnobacterium sp. CP1 640 species 1 0 2751 Carnobacterium maltaromaticum 1583 species 1 0 Jeotgalibaca 1470540 3 1470 genus 1 5 0 Jeotgalibaca dankookensis 708126 1 species 644 0 0 no rank 821 1 2621505 1903686 Jeotgalibaca sp. PTS2502 0 821 species 1 81852 Enterococcaceae 1 30 family 13284 20 0 Melissococcus 33969 2 genus 1325 6 1 0 0 1319 species 1 33970 Melissococcus plutonius 2737 Vagococcus 0 1762 genus 3 7 1 633807 Vagococcus penaei species 885 1 0 0 1 species 870 Vagococcus teuberi 519472 78 1 12 8978 genus 0 Enterococcus 1350 Enterococcus faecalis 1351 0 1 species 1506 0 1 764 species Enterococcus wangshanyuanii 2005703 0 466 species 1 37734 Enterococcus casseliflavus Enterococcus hirae 1354 0 1 species 964 2608891 3 1346 no rank 0 species 461 1 0 2060307 Enterococcus sp. FDAARGOS_375 0 439 species 1 2057791 Enterococcus sp. CR-Ec1 0 species 446 1 2060306 Enterococcus sp. FDAARGOS_163 417368 Enterococcus thailandicus 0 849 species 1 1 species 1539 0 Enterococcus faecium 1352 0 723 species 1 53345 Enterococcus durans Enterococcus mundtii 53346 0 1 743 species 51668 Tetragenococcus 0 1189 genus 2 1 1 0 1 1188 species Tetragenococcus halophilus 51669 0 1360 no rank 1 84086 endosymbiont 'TC1' of Trimyema compressum 243899 0 1 1360 species Erysipelotrichia 526524 0 1 2 10 2791 class 0 9 2789 order 1 11 Erysipelotrichales 526525 2778 family 8 9 1 0 128827 Erysipelotrichaceae Faecalibaculum 1729679 2 150 genus 1 1 0 Faecalibaculum rodentium 1702221 1 species 149 0 191303 0 1 genus 899 1 899 no rank 0 2638206 1 899 species 0 Turicibacter sp. H121 1712675 Erysipelothrix 1647 3 genus 1300 10 1 0 0 665 species 1 1648 Erysipelothrix rhusiopathiae 1 species 625 0 Erysipelothrix larvae 1514105 544447 no rank 420 1 0 0 420 species 1 1834207 Erysipelotrichaceae bacterium I46 212 1 206639 class 207 0 186801 Clostridia 68295 Thermoanaerobacterales 25467 order 35 23 1 0 0 3 278 family 1 3 Thermoanaerobacterales Family IV. Incertae Sedis 543372 1 1 2 275 genus 0 Mahella 252965 Mahella australiensis 252966 1 species 274 0 1 13 family 11842 13 0 543371 Thermoanaerobacterales Family III. Incertae Sedis 44000 Caldicellulosiruptor 0 1 128 8738 genus 9 Caldicellulosiruptor lactoaceticus 52766 1 species 933 0 Caldicellulosiruptor obsidiansis 717609 1 1036 species 0 0 1226 species 1 44001 Caldicellulosiruptor saccharolyticus 0 species 1052 1 55205 Caldicellulosiruptor owensensis 52765 Caldicellulosiruptor kristjanssonii species 924 1 0 1059 species 1 0 413888 Caldicellulosiruptor hydrothermalis 1 species 1134 0 Caldicellulosiruptor bescii 31899 Caldicellulosiruptor kronotskyensis 413889 0 1 species 1246 Thermoanaerobacterium 28895 3 genus 3091 1 7 0 Thermoanaerobacterium thermosaccharolyticum 1517 0 1 species 1987 29329 Thermoanaerobacterium xylanolyticum 1097 species 1 0 Thermoanaerobacteraceae 186814 20 1 16 11957 family 0 249529 1 929 genus 0 species 929 1 0 911092 Caldanaerobacter subterraneus 1 genus 264 0 140458 85874 Thermacetogenium phaeum 0 264 species 1 0 426 1 9 genus 9842 Thermoanaerobacter 1754 1 1094 species 0 Thermoanaerobacter mathranii 583357 29323 Thermoanaerobacter brockii 1117 species 1 0 0 1167 species 1 108150 Thermoanaerobacter italicus 496866 Thermoanaerobacter pseudethanolicus 1120 species 1 0 0 2 2546 no rank 2636821 Thermoanaerobacter sp. X514 399726 0 1 species 1241 Thermoanaerobacter sp. X513 573062 1 species 1305 0 0 species 1190 1 46354 Thermoanaerobacter wiegelii 0 species 1182 1 2325 Thermoanaerobacter kivui 129957 0 1 560 genus 560 species 1 0 129958 Carboxydothermus hydrogenoformans no rank 342 3 0 42857 44260 0 193 genus 1 species 193 1 0 1525 Moorella thermoacetica Ammonifex 42837 0 2 genus 149 2 1 0 1 species 147 Ammonifex degensii 42838 Thermodesulfobiaceae 227387 0 4 1 2 1367 family 227388 0 1363 genus 1 1 species 1363 0 Thermodesulfobium narugense 184064 0 1 4 4 1105 order Natranaerobiales 485256 Natranaerobiaceae 485255 2 1 3 family 1101 0 2 genus 1099 1 1 0 Natranaerobius 375928 Natranaerobius thermophilus 375929 0 1 1098 species 0 3 order 1033 2770089 2770092 family 829 2 0 499228 Tepidanaerobacter 0 1 2 829 genus 2 827 species 1 0 499229 Tepidanaerobacter acetatoxydans 2770093 204 family 1 0 0 204 genus 1 291988 Thermosediminibacter oceani 291990 0 1 species 204 9117 order 12 1 22 0 53433 Halanaerobiales 0 11 1 family 3145 5 53434 Halobacteroidaceae 3 1 2 genus 1074 0 Acetohalobium 28186 1071 species 1 0 28187 Acetohalobium arabaticum 42417 Halobacteroides 13 1 2060 genus 2 0 Halobacteroides halobius 42422 1 2047 species 0 15 1 5950 family 6 0 972 Halanaerobiaceae 2 genus 900 1 40 0 Halothermothrix 32636 31909 Halothermothrix orenii species 860 1 0 25 1 3 5035 genus 0 Halanaerobium 2330 2331 Halanaerobium praevalens 0 2822 species 1 0 2188 species 1 656519 Halanaerobium hydrogeniformans 0 order 169705 152 396 1 186802 Clostridiales 0 3 1 2 251 family Oscillospiraceae 216572 1 genus 248 0 459786 Oscillibacter valericigenes 351091 0 1 248 species 31979 Clostridiaceae 0 114 1 family 120800 40 Candidatus Arthromitus 49082 0 4 genus 4930 42 1 2638829 0 3 no rank 4888 0 species 1586 1 1041504 Candidatus Arthromitus sp. SFB-rat-Yit Candidatus Arthromitus sp. SFB-mouse 49118 1 species 1631 0 1 1671 species 0 Candidatus Arthromitus sp. SFB-mouse-NL 1508644 1 1 2 genus 1194 0 Geosporobacter 390805 0 1193 species 1 1424294 Geosporobacter ferrireducens Alkaliphilus 114627 3 genus 2576 5 1 0 Alkaliphilus metalliredigens 208226 1 1543 species 0 Alkaliphilus oremlandii 461876 0 1 1028 species Clostridium 1485 30 111986 genus 566 1 0 1494 Clostridium cochlearium 0 species 2344 1 2 1069 no rank 0 2614128 1042156 Clostridium sp. SY8519 species 153 1 0 755731 Clostridium sp. BNL1100 species 916 1 0 0 3111 species 1 394958 Clostridium taeniosporum 1 species 2646 0 Clostridium chauvoei 46867 0 23229 species 1 1491 Clostridium botulinum 0 1 species 2373 Clostridium novyi 1542 1534 Clostridium kluyveri 0 species 3316 1 1488 Clostridium acetobutylicum 2478 species 1 0 1548 Clostridium scatologenes species 3712 1 0 29341 Clostridium argentinense species 3068 1 0 Clostridium formicaceticum 1497 1 species 1696 0 1493 Clostridium cellulovorans species 2758 1 0 36745 Clostridium saccharoperbutylacetonicum 4735 species 1 0 1666 species 1 0 84022 Clostridium aceticum 1216932 Clostridium bornimense 0 species 3188 1 0 2183 species 1 84023 Clostridium autoethanogenum 1520 Clostridium beijerinckii 6148 species 1 0 1 species 1958 0 Clostridium tyrobutyricum 1519 Clostridium sporogenes 1509 1 2928 species 0 Clostridium carboxidivorans 217159 0 1 species 3669 Clostridium tetani 1513 0 1 species 3199 Clostridium ljungdahlii 1538 1 2284 species 0 0 species 4145 1 169679 Clostridium saccharobutylicum 1502 Clostridium perfringens 5832 species 1 0 Clostridium pasteurianum 1501 0 1 species 5355 1492 Clostridium butyricum species 4666 1 0 0 1 2668 species Clostridium estertheticum 238834 1 4996 species 0 Clostridium baratii 1561 990719 0 182 family 2 6 1 182 genus 2 0 990721 Christensenella 1805714 Christensenella massiliensis 176 species 1 0 538999 0 no rank 1636 9 265 genus 1 0 2717089 0 265 species 1 2086584 Mordavella sp. Marseille-P3756 1392389 Intestinimonas 208 genus 2 1 2 0 206 species 1 0 1297617 Intestinimonas butyriciproducens 0 2 237 family 539000 237 genus 2 3 1 0 73918 Thermaerobacter 0 species 234 1 73919 Thermaerobacter marianensis Clostridiales Family XIII. Incertae Sedis 543314 1 1 4 926 family 0 1 species 456 0 [Eubacterium] sulci 143393 86331 Mogibacterium 0 2 1 469 genus 2 Mogibacterium diversum 114527 1 467 species 0 0 10 family 12661 1 15 Peptostreptococcaceae 186804 623 genus 1 0 44259 1 623 species 0 Filifactor alocis 143361 823 no rank 1 0 1411023 1 823 species 0 Peptostreptococcaceae bacterium oral taxon 929 2081703 0 1 1 genus 1685 2 186831 Acetoanaerobium 1 species 1684 0 Acetoanaerobium sticklandii 1511 0 1 364 genus 1481960 1731 Peptoclostridium acidaminophilum 364 species 1 0 Paeniclostridium 1849828 2 2979 genus 1 6 0 Paeniclostridium sordellii 1505 0 1 2973 species 1870884 Clostridioides 1 5 genus 6172 2 0 0 1 species 6167 Clostridioides difficile 1496 31984 Heliobacteriaceae 0 250 family 3 2 1 0 1 1 2 genus 248 Heliobacterium 2697 1 species 247 0 Heliobacterium modesticaldum 35701 68298 Syntrophomonadaceae 0 4 1 family 578 5 Syntrophothermus 129001 0 2 genus 165 2 1 0 163 species 1 86170 Syntrophothermus lipocalidus Syntrophomonas 862 0 2 409 genus 1 1 1 species 408 0 Syntrophomonas wolfei 863 family 272 3 3 1 0 543349 Symbiobacteriaceae 2 1 269 genus 2 0 2733 Symbiobacterium 1 267 species 0 Symbiobacterium thermophilum 2734 0 1 33 26 9613 family Peptococcaceae 186807 0 1 16 4 986 genus Dehalobacter 56112 0 316 species 1 55583 Dehalobacter restrictus 0 no rank 654 2 2635733 1147129 Dehalobacter sp. DCA 0 321 species 1 1 333 species 0 Dehalobacter sp. CF 1131462 0 4 1 genus 245 2 471826 Candidatus Desulforudis 0 species 241 1 471827 Candidatus Desulforudis audaxviator 0 1 629 genus 2282742 58138 Desulfotomaculum acetoxidans 629 species 1 0 0 1 632 genus 51514 0 1 species 632 Dehalobacterium formicoaceticum 51515 Desulfotomaculum 1562 0 13 1 5 genus 1862 1833852 Desulfotomaculum ferrireducens 0 363 species 1 1565 Desulfotomaculum nigrificans 0 364 species 1 1 species 398 0 Desulfotomaculum ruminis 1564 Desulfotomaculum reducens 59610 0 1 species 724 0 1 genus 563 2282740 102134 Desulfotomaculum gibsoniae 0 species 563 1 0 5 1 genus 2116 4 79206 Desulfosporosinus 885581 Desulfosporosinus acidiphilus species 635 1 0 1563 Desulfosporosinus orientis 0 species 771 1 0 species 705 1 79209 Desulfosporosinus meridiei 278993 308 genus 1 0 863643 Thermincola potens 308 species 1 0 36853 Desulfitobacterium 0 12 1 1830 genus 5 0 1 409 species Desulfitobacterium dehalogenans 36854 0 1 species 435 Desulfitobacterium hafniense 49338 1 499 species 0 Desulfitobacterium metallireducens 142877 0 species 475 1 233055 Desulfitobacterium dichloroeliminans 51196 1 409 genus 0 51197 Syntrophobotulus glycolicus species 409 1 0 0 5 1871 family 17 1 Eubacteriaceae 186806 1017 genus 2 9 1 0 1730 Eubacterium 1736 Eubacterium limosum 0 species 1008 1 33951 Acetobacterium genus 837 2 5 1 0 832 species 1 0 33952 Acetobacterium woodii 11 6285 family 0 2304686 2305130 no rank 157 1 0 species 157 1 0 1834198 Ruminiclostridium sp. KB18 0 564 genus 1 2304693 [Clostridium] thermosuccinogenes 84032 0 1 564 species 0 1 2 genus 791 2 236752 Fastidiosipila 0 789 species 1 236753 Fastidiosipila sanguinis 2304691 468 genus 1 0 1510 [Clostridium] stercorarium 0 468 species 1 2304692 3 3060 genus 0 1 1172 species 0 [Clostridium] clariflavum 288965 0 1 species 655 Ruminiclostridium thermocellum 1515 0 1 species 1233 Herbivorax saccincola 1677857 1637257 1 genus 231 0 231 species 1 0 884684 Mageeibacillus indolicus Ruminiclostridium 1508657 13 1 2 1014 genus 0 [Clostridium] cellulolyticum 1521 0 1 species 1001 541000 Ruminococcaceae 0 1924 family 11 1 22 0 2 genus 295 3 1 Faecalibacterium 216851 0 1 292 species Faecalibacterium prausnitzii 853 2 774 genus 0 1263 Ruminococcus bicirculans 1160721 1 species 393 0 Ruminococcus albus 1264 0 1 species 381 229 genus 2 2 1 0 946234 Flavonifractor 0 1 species 227 Flavonifractor plautii 292800 0 no rank 270 1 552397 29343 [Clostridium] cellulosi 270 species 1 0 2305133 0 108 no rank 1 0 species 108 1 1572656 Ruminococcaceae bacterium CPB6 1 225 genus 0 253238 Ethanoligenens harbinense 253239 1 species 225 0 1890281 Herbivorax 0 1 genus 1 186803 Lachnospiraceae 0 1 26 12986 family 24 2719313 0 1 genus 368 208479 [Clostridium] bolteae 0 368 species 1 207244 Anaerostipes genus 839 2 5 1 0 Anaerostipes hadrus 649756 0 1 834 species 1 1 genus 2017 2 0 698776 Cellulosilyticum 1 species 2016 0 Cellulosilyticum lentocellum 29360 0 genus 540 1 2719231 0 540 species 1 84030 [Clostridium] saccharolyticum 0 1 genus 245 841 Roseburia hominis 301301 0 1 species 245 1117 genus 1 0 2569097 1 1117 species 0 [Eubacterium] hallii 39488 28050 0 genus 1103 1 [Eubacterium] eligens 39485 0 1 1103 species 778 no rank 2 0 186928 0 1 324 species Lachnospiraceae bacterium oral taxon 500 712991 0 species 454 1 39491 [Eubacterium] rectale 0 genus 1558 2 830 Butyrivibrio proteoclasticus 43305 0 1 795 species 0 species 763 1 185008 Butyrivibrio hungatei 0 1078 genus 3 3 1 572511 Blautia 0 1 no rank 398 2648079 0 1 species 398 Blautia sp. YL58 1796616 1 species 677 0 Blautia hansenii 1322 1663717 Herbinix 0 2 1 750 genus 2 0 748 species 1 1679721 Herbinix luporum 1506553 Lachnoclostridium 0 14 1 genus 1942 4 0 210 species 1 1871021 Lachnoclostridium phocaeense 0 1 no rank 385 2608895 Lachnoclostridium sp. YL32 1834196 1 species 385 0 66219 Lachnoclostridium phytofermentans 0 1333 species 1 2039240 1 genus 625 0 Anaerotignum propionicum 28446 0 1 species 625 1737404 Tissierellia class 8818 19 36 1 0 0 2 819 no rank 1737407 5 1 2 819 genus 0 Ezakiella 1582879 1852374 Ezakiella massiliensis species 814 1 0 1 26 16 7963 order 0 Tissierellales 1737405 Gottschalkiaceae 2042895 3 1897 family 1 1 0 Gottschalkia 1505664 4 1 2 genus 1896 0 0 1 species 1892 Gottschalkia acidurici 1556 1570339 Peptoniphilaceae 0 family 6040 12 1 20 Finegoldia 150022 1 5 2 1372 genus 0 1 1367 species 0 Finegoldia magna 1260 Anaerococcus 165779 0 3 1617 genus 1 2 0 1 770 species Anaerococcus mediterraneensis 1870984 0 1 845 species Anaerococcus prevotii 33034 543311 Parvimonas 0 1973 genus 2 1 4 Parvimonas micra 33033 0 1 species 1969 0 1 5 genus 840 2 162289 Peptoniphilus no rank 835 1 0 2637196 835 species 1 0 1912856 Peptoniphilus sp. ING2-D1G 2 genus 218 1 1 0 Murdochiella 1161127 1852373 Murdochiella vaginalis 0 217 species 1 159 7298349 clade 0 1798711 Cyanobacteria 1117 159 phylum 7298349 1 45 0 47 subclass 38139 0 1301283 Oscillatoriales 1150 97 1 21 order 11223 0 6 family 4338 1 34 0 Oscillatoriaceae 1892254 1158 Oscillatoria 0 13 1 2073 genus 3 Oscillatoria nigro-viridis 482564 1 1049 species 0 0 1011 species 1 118323 Oscillatoria acuminata 1155738 Moorea 1 9 genus 2231 2 0 0 1 2222 species Moorea producens 1155739 27 1 5 family 4289 0 Microcoleaceae 1892252 1205 Trichodesmium genus 3426 2 6 1 0 1206 Trichodesmium erythraeum 0 3420 species 1 genus 836 2 12 1 0 44471 Microcoleus 0 no rank 824 1 2642155 Microcoleus sp. PCC 7113 1173027 1 824 species 0 family 514 3 1 53 0 1892249 Cyanothecaceae 58 1 461 genus 2 0 43988 Cyanothece 2649277 0 403 no rank 1 Cyanothece sp. PCC 7425 395961 0 1 403 species Gomontiellaceae 1892255 3 1634 family 9 1 0 2 1625 genus 5 1 0 Crinalium 241421 0 1 species 1620 Crinalium epipsammum 241425 Coleofasciculaceae 1892251 1 11 3 351 family 0 Geitlerinema 63132 0 5 1 2 genus 340 1 no rank 335 0 2648775 Geitlerinema sp. PCC 7407 1173025 1 species 335 0 1118 Chroococcales 0 1 56 order 26916 26 0 15 1 10 family 10345 Aphanothecaceae 1890450 28070 2 genus 3300 0 1645 species 1 0 2546356 0 1645 strain 1 65393 Cyanothece sp. PCC 7424 1 1655 species 0 2546359 1 strain 1655 0 Cyanothece sp. PCC 7822 497965 2546365 0 2 genus 2137 2137 species 2 0 2546366 1 strain 1079 0 Cyanothece sp. PCC 8802 395962 1 strain 1058 0 Cyanothece sp. PCC 8801 41431 1453359 Candidatus Atelocyanobacterium 2353 genus 2 1 3 0 species 2350 1 0 713887 Candidatus Atelocyanobacterium thalassa 92682 0 no rank 1025 2 Halothece 76023 0 1 3 2 1025 genus 2632878 1022 no rank 1 0 Halothece sp. PCC 7418 65093 0 1 1022 species 1 genus 1515 0 263510 0 1 1515 species 2546360 1 strain 1515 0 Cyanothece sp. ATCC 51142 43989 1890449 Microcystaceae 1 45 family 3731 4 0 1 17 3 genus 3686 0 Microcystis 1125 1 species 2516 0 Microcystis aeruginosa 1126 2643300 1153 no rank 1 0 species 1153 1 0 1967666 Microcystis sp. MC19 1890452 Cyanobacteriaceae 0 7 1 family 2589 3 4 1 2582 genus 2 0 102234 Cyanobacterium 0 1 species 2578 Cyanobacterium aponinum 379064 Chroococcaceae 1890464 0 1 70 8 family 10195 3 5452 genus 32 1 0 Geminocystis 669357 0 2 no rank 5420 2625037 1 3035 species 0 Geminocystis sp. NIES-3708 1615909 Geminocystis sp. NIES-3709 1617448 1 2385 species 0 102231 Gloeocapsa 0 genus 1494 2 1 4 2623012 0 no rank 1490 1 Gloeocapsa sp. PCC 7428 1173026 0 1 1490 species Chondrocystis 268175 0 2 genus 3179 1 4 3175 no rank 1 0 2648896 2005460 Chondrocystis sp. NIES-4102 0 species 3175 1 52604 Pleurocapsales 0 7520 order 7 8 1 0 1 24 6607 family 4 1890498 Dermocarpellaceae 6583 genus 3 19 1 0 102115 Stanieria 102116 Stanieria cyanosphaera species 3122 1 0 1 no rank 3442 0 2642663 1807358 Stanieria sp. NIES-3757 3442 species 1 0 Hyellaceae 1890500 1 12 2 905 family 0 1 893 genus 0 44474 54308 Pleurocapsa minor 0 893 species 1 0 no rank 1344 1 1983111 cyanobacterium endosymbiont of Epithemia turgida 718217 0 1 1344 species 1890424 Synechococcales 0 7206124 order 59 1 200 Prochloraceae 1213 0 49 1 5 family 7151042 1218 Prochlorococcus 0 267 1 genus 7150993 4 Prochlorococcus marinus 1219 0 1 species 5501495 2627481 0 2 no rank 1649231 1501269 Prochlorococcus sp. MIT 0801 0 species 38605 1 Prochlorococcus sp. MIT 0604 1501268 1 species 1610626 0 Leptolyngbyaceae 1890438 21 1 6 3192 family 0 3171 genus 5 17 1 0 47251 Leptolyngbya 2369 no rank 3 0 2650499 0 species 624 1 1080068 Leptolyngbya sp. O-77 111781 Leptolyngbya sp. PCC 7376 0 species 1151 1 0 1 594 species Leptolyngbya sp. NIES-3755 1752064 1 species 785 0 Leptolyngbya boryana 1184 1890436 Pseudanabaenaceae 0 1 7 family 1212 3 Pseudanabaena 1152 0 2 1205 genus 1 5 2593292 no rank 1200 1 0 82654 Pseudanabaena sp. PCC 7367 0 1200 species 1 47001 family 34 1 61 0 1890426 Synechococcaceae 1 1 2 362 genus 0 Thermosynechococcus 146785 146786 Thermosynechococcus elongatus 0 361 species 1 Synechococcus 1129 26 genus 41514 963 1 0 23 no rank 39663 0 2626047 1350461 Synechococcus sp. UTEX 2973 531 species 1 0 316279 Synechococcus sp. CC9902 species 1734 1 0 0 376 species 1 195498 Synechococcus sp. PCC 7117 0 1 4069 species Synechococcus sp. CC9605 110662 64471 Synechococcus sp. CC9311 0 1457 species 1 1 species 1535 0 Synechococcus sp. RCC307 316278 Synechococcus sp. JA-2-3B'a(2-13) 321332 0 1 292 species 0 1 2997 species Synechococcus sp. KORDI-100 1280380 Synechococcus sp. PCC 73109 374982 1 species 357 0 570 species 1 0 1827144 Synechococcus sp. NIES-970 Synechococcus sp. SynAce01 1916956 0 1 1318 species Synechococcus sp. WH 8103 29410 1 3462 species 0 84588 Synechococcus sp. WH 8102 0 3398 species 1 0 3565 species 1 585425 Synechococcus sp. KORDI-52 Synechococcus sp. PCC 7002 32049 0 1 375 species 0 1 species 343 Synechococcus sp. PCC 8807 195248 321327 Synechococcus sp. JA-3-3Ab 232 species 1 0 195253 Synechococcus sp. PCC 6312 0 species 441 1 Synechococcus sp. WH 7803 32051 0 1 2680 species 1 species 457 0 Synechococcus sp. PCC 7003 374981 0 1404 species 1 1173263 Synechococcus sp. PCC 7502 585423 Synechococcus sp. KORDI-49 0 3214 species 1 0 1 4856 species Synechococcus sp. WH 8109 166314 1 550 species 0 Synechococcus elongatus 32046 1 species 338 0 Synechococcus lividus 33070 1 1 genus 983 2 0 13034 Dactylococcopsis 1 species 982 0 Dactylococcopsis salina 292566 0 1 78 3 4081 genus Cyanobium 167375 59930 Cyanobium gracile species 2060 1 0 0 1 no rank 1943 2627006 0 1 species 1943 Cyanobium sp. NIES-981 1851505 1 5 family 1008 3 0 1890429 Acaryochloridaceae 0 genus 1003 2 2 1 155977 Acaryochloris Acaryochloris marina 155978 0 1 1001 species 2 family 610 0 2303730 0 1 5 2 genus 610 Halomicronema 170610 1209493 Halomicronema hongdechloris 0 605 species 1 Merismopediaceae 1890428 0 5 family 1859 1 2 1142 Synechocystis 0 41 1 genus 1857 4 2640012 no rank 1816 3 0 1 species 591 0 Synechocystis sp. PCC 6803 1148 591 species 1 0 2116702 Synechocystis sp. IPPAS B-1465 Synechocystis sp. PCC 6714 1147 0 1 634 species Nostocales 1161 117 1 34 42831 order 0 0 1 5 3 1973 family Hapalosiphonaceae 1892263 0 2 1968 genus 6 1 Fischerella 1190 494603 1 1962 no rank 0 species 1962 1 0 1752063 Fischerella sp. NIES-3754 1219117 0 1 1311 no rank 1940762 Nostocales cyanobacterium HT-58-2 1311 species 1 0 59 1 18 23414 family 0 Nostocaceae 1162 0 1 111 genus 14122 10 1177 Nostoc 1 1488 species 0 Nostoc punctiforme 272131 7 10989 no rank 0 2593658 0 1 1735 species Nostoc sp. PCC 7107 317936 0 species 1210 1 103690 Nostoc sp. PCC 7120 Nostoc sp. PCC 7524 28072 0 1 1733 species 1869241 Nostoc sp. CENA543 0 1465 species 1 1 1481 species 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1261031 1751286 Nostoc sp. NIES-3756 0 1843 species 1 0 1 1522 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1618022 species 1534 1 0 1306274 Nostoc flagelliforme 1 7 3 3096 genus 0 Trichormus 264688 1164 Trichormus azollae 1538 species 1 0 0 species 1551 1 264691 Trichormus variabilis 40 1 4 6137 genus 0 Anabaena 1163 2619674 2 3897 no rank 0 Anabaena sp. WA102 1647413 0 1 1965 species 1932 species 1 0 46234 Anabaena sp. 90 2200 species 1 0 1165 Anabaena cylindrica 29 1 family 3449 3 0 1185 Rivulariaceae 3420 genus 2 7 1 0 373984 Rivularia no rank 3413 1 0 2676603 3413 species 1 0 373994 Rivularia sp. PCC 7116 2661849 0 8 family 12567 70 1 genus 12567 8 0 1186 Calothrix 2619626 6 no rank 10774 0 1219 species 1 0 2005462 Calothrix sp. NIES-3974 species 2129 1 0 2005461 Calothrix sp. NIES-4101 1 1544 species 0 Calothrix sp. 336/3 1337936 Calothrix sp. NIES-4071 2005469 1 2775 species 0 Calothrix sp. NIES-2098 1954171 0 1 species 1783 1324 species 1 0 99598 Calothrix sp. PCC 7507 1 1723 species 0 Calothrix parietina 32054 1890505 Chroococcidiopsidales 0 4 1 1569 order 4 0 1 15 family 1565 3 1890528 Chroococcidiopsidaceae 2 1550 genus 4 1 0 Chroococcidiopsis 54298 0 1 1546 species Chroococcidiopsis thermalis 54299 0 6 777 class 1 3 Gloeobacteria 307596 order 774 5 1 11 0 307595 Gloeobacterales Gloeobacteraceae 1890422 1 11 4 763 family 0 genus 752 3 2 1 0 33071 Gloeobacter Gloeobacter violaceus 33072 1 388 species 0 0 species 362 1 1416614 Gloeobacter kilaueensis Tenericutes 544448 0 11 1 102 75788 phylum 713063 2 2302 no rank 0 0 1 species 1045 Tenericutes bacterium MZ-XQ 1911683 1911684 Tenericutes bacterium MO-XQ 1257 species 1 0 31969 Mollicutes 1 195 class 72269 97 0 186329 Acholeplasmatales 0 order 7145 13 1 29 2146 Acholeplasmataceae 0 7116 family 12 32 1 Acholeplasma 2147 21 1 5 3880 genus 0 species 567 1 0 61635 Acholeplasma brassicae 0 1 1314 species Acholeplasma palmae 38986 0 species 977 1 2148 Acholeplasma laidlawii Acholeplasma oculi 35623 1 species 1001 0 Candidatus Phytoplasma 33926 6 3204 genus 1 27 0 0 species group 786 1 85630 species 786 1 0 37692 Candidatus Phytoplasma mali 85632 0 1 species group 594 59748 Candidatus Phytoplasma australiense species 594 1 0 85620 0 3 species group 1797 Aster yellows witches'-broom phytoplasma 229545 0 1 species 565 634 species 1 0 100379 Onion yellows phytoplasma 202462 Maize bushy stunt phytoplasma 0 598 species 1 Entomoplasmatales 186328 0 61 1 39 order 32159 24 family 22562 34 1 0 Spiroplasmataceae 2131 0 22528 genus 23 255 1 2132 Spiroplasma 216936 Spiroplasma diminutum 1254 species 1 0 1 species 1351 0 Spiroplasma turonicum 216946 2637901 0 2 1646 no rank 1914410 Spiroplasma sp. NBRC 100390 823 species 1 0 1 species 823 0 Spiroplasma sp. TU-14 1898044 1 572 species 0 Spiroplasma atrichopogonis 1114980 2133 Spiroplasma citri 1015 species 1 0 0 species 1391 1 216935 Spiroplasma culicicola 216944 Spiroplasma sabaudiense species 802 1 0 216942 Spiroplasma litorale 1470 species 1 0 1 species 572 0 Spiroplasma mirum 2144 216934 Spiroplasma corruscae 0 species 1134 1 Spiroplasma apis 2137 1 species 768 0 2145 Spiroplasma taiwanense 0 species 1274 1 0 1 734 species Spiroplasma syrphidicola 216945 1 species 1040 0 Spiroplasma kunkelii 47834 Spiroplasma cantharicola 362837 0 1 1455 species 315358 Spiroplasma eriocheiris 0 693 species 1 216933 Spiroplasma chrysopicola 766 species 1 0 2136 Spiroplasma monobiae species 866 1 0 species 1080 1 0 216938 Spiroplasma helicoides 1064 species 1 0 2139 Spiroplasma clarkii 1 1326 species 0 Spiroplasma floricola 216937 33925 Entomoplasmataceae 0 family 9536 14 1 26 5 2870 genus 21 1 0 Entomoplasma 46238 1 880 species 0 Entomoplasma somnilux 215578 81459 Entomoplasma melaleucae 898 species 1 0 214888 Entomoplasma luminosum 754 species 1 0 Entomoplasma freundtii 74700 0 1 317 species 46239 Mesoplasma 0 157 1 genus 6640 8 Mesoplasma tabanidae 219745 0 1 species 848 632 species 1 0 225999 Mesoplasma syrphidae 2149 Mesoplasma entomophilum 874 species 1 0 0 574 species 1 138853 Mesoplasma lactucae Mesoplasma chauliocola 216427 0 1 922 species species 920 1 0 324078 Mesoplasma coleopterae 1 species 1713 0 Mesoplasma florum 2151 Mycoplasmatales 2085 44 32770 order 1 78 0 Mycoplasmataceae 2092 0 1 76 43 family 32692 20947 genus 27 273 1 0 2093 Mycoplasma 1 1181 species 0 Mycoplasma hominis 2098 1 1170 species 0 Mycoplasma penetrans 28227 2096 Mycoplasma gallisepticum species 658 1 0 Mycoplasma pneumoniae 2104 1 124 species 0 65123 Mycoplasma wenyonii 0 species 172 1 1 species 1127 0 Mycoplasma yeatsii 51365 656088 3 species group 5205 0 0 1240 species 1 2105 Mycoplasma leachii Mycoplasma capricolum 2095 0 1 species 1481 Mycoplasma mycoides 2102 0 1 2484 species 1 species 732 0 Mycoplasma canadense 29554 984991 Mycoplasma parvum 499 species 1 0 136241 Mycoplasma haemocanis 0 434 species 1 Mycoplasma genitalium 2097 1 species 453 0 86660 Mycoplasma dispar 518 species 1 0 1 1094 species 0 Mycoplasma mobile 2118 species 767 1 0 29501 Mycoplasma haemofelis Mycoplasma ovis 171632 1 species 241 0 Mycoplasma hyopneumoniae 2099 0 1 919 species 0 1 species 887 Mycoplasma hyorhinis 2100 1 species 974 0 Mycoplasma putrefaciens 2123 2128 Mycoplasma flocculare 0 473 species 1 50052 Mycoplasma crocodyli 850 species 1 0 2111 Mycoplasma arthritidis 0 species 408 1 Mycoplasma suis 57372 0 1 species 424 0 no rank 649 1 2683645 1 species 649 0 Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 45362 Mycoplasma bovoculi species 715 1 0 12 genus 9994 0 2767358 0 1 species 676 Mycoplasma bovirhinis 29553 2109 Mycoplasma synoviae species 586 1 0 0 1 species 612 Mycoplasma bovigenitalium 2112 Mycoplasma bovis 28903 1 1736 species 0 Mycoplasma californicum 2113 1 species 449 0 2110 Mycoplasma agalactiae species 1014 1 0 Mycoplasma arginini 2094 1 728 species 0 Mycoplasma canis 29555 0 1 species 998 Mycoplasma pullorum 48003 0 1 700 species 0 817 species 1 2115 Mycoplasma fermentans 0 species 802 1 2107 Mycoplasma pulmonis Mycoplasma cynos 171284 1 species 876 0 3 1675 genus 1 6 0 Ureaplasma 2129 1 species 762 0 Ureaplasma urealyticum 2130 134821 Ureaplasma parvum 0 species 907 1 2 1206 no rank 0 2799557 5 1 genus 1206 2 0 1912503 Candidatus Izimaplasma 0 no rank 1201 1 2624196 Candidatus Izimaplasma sp. HR1 1541959 1 1201 species 0 200795 4311 phylum 41 0 189775 Thermomicrobia 482 class 7 3 1 0 0 1 1 3 order 130 Thermomicrobiales 189776 2 family 129 0 189777 0 1 1 129 genus 2 499 Thermomicrobium 500 Thermomicrobium roseum 0 species 128 1 3 349 subclass 0 85000 85001 Sphaerobacterales 0 7 1 349 order 3 2 342 suborder 0 255728 0 2 family 342 85002 2 genus 342 4 1 0 Sphaerobacter 2056 338 species 1 0 2057 Sphaerobacter thermophilus 292625 Anaerolineae class 629 7 3 1 0 292629 Anaerolineales 2 1 626 order 6 0 0 5 family 624 3 1 Anaerolineaceae 292628 genus 199 1 0 233189 species 199 1 0 167964 Anaerolinea thermophila 259 genus 2 1 1 0 2019482 Brevefilum Brevefilum fermentans 1986204 0 1 species 258 1324991 0 163 no rank 1 Anaerolineaceae bacterium oral taxon 439 1889813 0 1 species 163 301297 Dehalococcoidia 1020 class 8 1 8 0 Dehalogenimonas 670486 3 365 genus 1 15 0 0 species 195 1 1839801 Dehalogenimonas formicexedens Dehalogenimonas lykanthroporepellens 552810 1 species 155 0 4 647 order 2 1 0 Dehalococcoidales 1202465 1202464 0 3 family 645 0 645 genus 3 3 1 61434 Dehalococcoides 1 no rank 158 0 237581 1522671 Dehalococcoides sp. UCH007 0 species 158 1 Dehalococcoides mccartyi 61435 0 1 484 species Chloroflexia 32061 2 1 11 1278 class 0 32064 Chloroflexales 0 order 1276 10 1 10 1508595 492 suborder 4 0 4 family 492 1 1 0 Roseiflexaceae 1508635 1 12 genus 491 3 0 120961 Roseiflexus 2609473 0 no rank 240 1 Roseiflexus sp. RS-1 357808 1 species 240 0 0 1 239 species Roseiflexus castenholzii 120962 5 suborder 774 0 1508594 0 family 774 5 1 1 1106 Chloroflexaceae 1107 Chloroflexus 0 1 15 genus 773 4 Chloroflexus aurantiacus 1108 213 1 2 species 426 0 Chloroflexus sp. Y-400-fl 480224 0 1 strain 213 332 species 1 0 152260 Chloroflexus aggregans 0 3 1 5 class 612 Ardenticatenia 1382928 1382929 Ardenticatenales 0 9 1 609 order 4 3 family 600 7 1 0 Ardenticatenaceae 1382930 0 1 4 2 593 genus Candidatus Promineofilum 1988031 589 species 1 0 1806508 Candidatus Promineofilum breve 475962 0 3 290 class 475963 0 290 order 3 0 3 1 3 family 290 Caldilineaceae 475964 1 1 287 genus 2 0 233191 Caldilinea 133453 Caldilinea aerophila species 286 1 0 1297 34 6253 phylum 0 Deinococci 188787 0 1 24 34 class 6253 0 2941 order 16 1 25 68933 Thermales Thermaceae 188786 1 36 15 2916 family 0 Meiothermus 65551 0 1 7 3 635 genus 52022 Meiothermus silvanus species 229 1 0 0 1 species 399 Meiothermus ruber 277 Thermus 270 1 22 8 1793 genus 0 0 1 159 no rank 2619321 1111069 Thermus sp. CCB_US3_UF1 species 159 1 0 Thermus brockianus 56956 0 1 species 190 Thermus parvatiensis 456163 1 species 210 0 Thermus aquaticus 271 0 1 species 209 37636 Thermus scotoductus 0 173 species 1 species 268 1 0 56957 Thermus oshimai 1 562 species 0 Thermus thermophilus 274 1 4 2 genus 241 0 Oceanithermus 208447 0 1 237 species Oceanithermus profundus 187137 186191 0 1 genus 211 1 211 species 0 Marinithermus hydrothermalis 186192 Deinococcales 118964 0 15 order 2921 1 29 Deinococcaceae 183710 0 1 14 14 2892 family Deinococcus 1298 0 62 1 13 2878 genus Deinococcus actinosclerus 1768108 1 species 223 0 0 1 257 species Deinococcus soli Cha et al. 2016 1309411 1299 Deinococcus radiodurans species 196 1 0 Deinococcus gobiensis 502394 0 1 species 272 1 238 species 0 Deinococcus peraridilitoris 432329 1 207 species 0 Deinococcus swuensis 1182571 0 species 377 1 55148 Deinococcus proteolyticus Deinococcus puniceus 1182568 0 1 species 174 0 1 175 species Deinococcus deserti 310783 309887 Deinococcus maricopensis species 278 1 0 2623546 0 211 no rank 1 211 species 1 0 2080419 Deinococcus sp. NW-56 208 species 1 0 68909 Deinococcus geothermalis 0 2 367 order 2762275 332247 2 family 367 0 Truepera 332248 0 12 1 2 genus 367 species 355 1 0 332249 Truepera radiovictrix