members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 38887 31 32004983 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4693 2157 270 40604 0 superkingdom 0 Euryarchaeota phylum 1 36878 28890 219 1 0 clade 22148 2290931 113 47 64 183963 11657 1 class Halobacteria 0 3824 1 Natrialbales order 0 40 20 1644060 58 19 1644061 3784 1 Natrialbaceae family 0 63742 1 0 genus 350 13769 1 0 Natrialba magadii species 350 203193 2 3 0 Halobiforma genus 1 516 229731 1 0 Halobiforma lacisalsi species 513 9 2 353799 284 1 Halostagnicola genus 0 353800 1 0 species Halostagnicola larsenii 275 1 29287 336 genus 0 29288 1 0 Natronococcus occultus species 336 387342 2 3 0 genus Halopiger 1 457 387343 1 0 Halopiger xanaduensis species 454 207 1 genus Natronobacterium 0 1 2 2256 206 0 species Natronobacterium gregoryi 44930 1 325 1 Salinarchaeum genus 0 5 2 1269201 1 2621923 320 no rank 0 320 0 species Salinarchaeum sp. Harcht-Bsk1 1333523 1 1 637 0 genus Natrinema 12 88723 3 2622230 1 0 no rank 337 0 species Natrinema sp. J7-2 337 406552 1 1 69525 Natrinema pellirubrum species 0 288 1 614 0 Haloterrigena genus 14 121871 3 1 588898 215 species Haloterrigena daqingensis 0 1 62320 Haloterrigena turkmenica species 0 385 1 4510 0 Halobacteriales order 70 2235 27 1963268 15 35 0 family Haloarculaceae 1 2994 41 2237 5 1 1182 0 genus Haloarcula 1932004 1 0 species Haloarcula taiwanensis 298 51589 1 0 Haloarcula hispanica species 279 285 0 no rank 2624677 1 285 Haloarcula sp. CBA1115 species 0 1 1592728 0 Haloarcula marismortui species 279 2238 1 146825 3 6 0 Halorhabdus genus 1 622 146826 1 407 0 Halorhabdus utahensis species 209 species Halorhabdus tiamatea 0 1 430914 2 203135 3 Halomicrobium genus 0 325 1 1 57705 species Halomicrobium mukohataei 0 322 2 63743 417 genus 0 197 0 Natronomonas moolapensis species 416273 1 220 species Natronomonas pharaonis 0 1 2257 413 1 genus Halorientalis 0 13 2 1073987 1 2648975 no rank 0 400 1932360 1 400 0 species Halorientalis sp. IM1011 11 2236 12 Halobacteriaceae family 0 1446 1 906 1 Halobacterium genus 0 10 4 2239 290 0 Halobacterium hubeiense species 1407499 1 2668073 1 366 0 no rank 366 0 species Halobacterium sp. DL1 751944 1 240 Halobacterium salinarum species 0 1 2242 0 Halodesulfurarchaeum genus 1 178 1980514 2 1 177 species Halodesulfurarchaeum formicicum 0 1 1873524 11 332246 2 1 202 0 Halalkalicoccus genus species Halalkalicoccus jeotgali 0 191 1 413810 2 1656823 4 Halanaeroarchaeum genus 0 148 1 1604004 1 144 0 species Halanaeroarchaeum sulfurireducens 46 16 1644055 3276 1 Haloferacales order 0 Halorubraceae family 0 1252 1 7 1963271 6 2 1209988 7 genus Halopenitus 0 297 1 0 species Halopenitus persicus 290 1048396 1 0 Halorubrum genus 1 577 56688 3 30 0 species Halorubrum trapanicum 273 29284 1 1 2247 274 Halorubrum lacusprofundi species 0 1 1644057 372 genus 0 0 species Salinigranum rubrum 372 755307 1 235 no rank 0 1 2678336 1 756883 235 halophilic archaeon DL31 species 0 7 1644056 10 family Haloferacaceae 0 1743 1 7 2251 4 1 1312 0 genus Haloferax 35746 1 0 species Haloferax gibbonsii 527 2252 1 0 Haloferax mediterranei species 291 1 2246 487 Haloferax volcanii species 0 148 0 genus 293431 1 Haloquadratum walsbyi species 0 148 1 293091 273 genus 0 1 60846 0 Halogeometricum borinquense species 273 60847 1 Methanomicrobia class 0 10491 1 49 224756 15 94695 29 14 0 order Methanosarcinales 1 7293 4 143067 3 family Methanosaetaceae 0 516 1 3 2222 3 1 513 0 Methanothrix genus 217 0 species Methanothrix soehngenii 2223 1 301375 1 293 0 species Methanosaeta harundinacea 0 Methanosarcinaceae family 1 6763 2206 24 1 1 196136 genus 0 173 39669 1 0 species Methanosalsum zhilinae 173 0 genus 258 2220 1 species Methanolobus psychrophilus 0 258 1 420950 240 0 genus 2321 1 240 0 Methanohalobium evestigatum species 2322 1 4873 1 genus Methanosarcina 0 23 13 2207 0 species Methanosarcina horonobensis 276 418008 1 4 2644672 1284 no rank 0 249 Methanosarcina sp. WWM596 species 0 1 1434103 Methanosarcina sp. MTP4 species 0 383 1 1434100 305 Methanosarcina sp. WH1 species 0 1 1434102 1 1434099 Methanosarcina sp. Kolksee species 0 347 1 170861 Methanosarcina lacustris species 0 230 Methanosarcina acetivorans species 0 397 1 2214 462 Methanosarcina mazei species 0 1 2209 2210 1 0 Methanosarcina thermophila species 226 312 0 species Methanosarcina vacuolata 2215 1 species Methanosarcina barkeri 0 1271 1 2208 392 0 species Methanosarcina siciliae 38027 1 1 2225 3 1 530 0 genus Methanococcoides 287 0 species Methanococcoides methylutens 2226 1 0 Methanococcoides burtonii species 242 29291 1 431 1 genus Methanohalophilus 0 1 3 2175 2176 1 0 Methanohalophilus mahii species 203 2177 1 0 species Methanohalophilus halophilus 227 0 genus 257 101191 1 101192 1 0 Methanomethylovorans hollandica species 257 5 570264 11 Methanocellales order 0 490 1 479 1 family Methanocellaceae 0 1 4 570265 2 3 570266 478 1 Methanocella genus 0 1 1175445 Methanocella arvoryzae species 0 353 123 0 species Methanocella conradii 1175444 1 14 2191 12 Methanomicrobiales order 0 2693 1 family 0 361 1 88404 1 2192 genus 0 361 361 0 species Methanocorpusculum labreanum 83984 1 268 0 family 196137 1 2202 1 268 0 genus 1 2203 species Methanospirillum hungatei 0 268 family Methanomicrobiaceae 0 1066 1 6 2194 3 0 genus Methanoculleus 1 865 45989 4 8 1 2619537 228 no rank 0 Methanoculleus sp. MAB1 species 0 228 1 86622 2198 1 249 0 species Methanoculleus marisnigri 1 83986 380 Methanoculleus bourgensis species 0 1 230355 genus 0 198 198 0 species Methanolacinia petrolearia 54120 1 2 5 1198451 986 1 Methanoregulaceae family 0 2 395331 764 genus 0 0 Methanoregula boonei species 270 358766 1 Methanoregula formicica species 0 494 1 882104 2 475087 5 genus Methanosphaerula 0 220 1 0 species Methanosphaerula palustris 215 475088 1 3 40 183968 4286 1 Thermococci class 0 2258 39 12 0 Thermococcales order 1 4283 38 2259 7 family Thermococcaceae 0 4271 1 genus 0 91 1 83867 971279 1 0 species Palaeococcus pacificus 91 7 2260 606 genus 0 1 2261 119 Pyrococcus furiosus species 0 1 29292 35 Pyrococcus abyssi species 0 species Pyrococcus yayanosii 0 56 1 1008460 115 species Pyrococcus kukulkanii 0 1 1609559 88 species Pyrococcus horikoshii 0 1 53953 2629106 2 193 0 no rank 0 Pyrococcus sp. ST04 species 113 1183377 1 342949 1 80 0 species Pyrococcus sp. NA2 29 29 2263 3567 1 Thermococcus genus 0 53952 1 0 Thermococcus peptonophilus species 109 104 Thermococcus guaymasensis species 0 1 110164 112 species Thermococcus barossii 0 1 54077 2264 1 0 Thermococcus celer species 169 1 187878 species Thermococcus gammatolerans 0 106 1 172049 195 Thermococcus sibiricus species 0 90 Thermococcus cleftensis species 0 1 163003 0 no rank 883 2627626 6 265 0 species Thermococcus sp. AM4 246969 1 1 122420 species Thermococcus sp. P6 0 65 1 2008440 species Thermococcus sp. 5-4 0 99 1674923 1 0 Thermococcus sp. 2319x1 species 83 0 Thermococcus sp. 4557 species 225 1042877 1 146 species Thermococcus sp. EXT12c 0 1 2016361 64 0 Thermococcus piezophilus species 1712654 1 142 species Thermococcus siculi 0 1 72803 107 Thermococcus radiotolerans species 0 1 187880 1 1505907 126 Thermococcus eurythermalis species 0 582419 1 178 0 Thermococcus paralvinellae species 1 2265 species Thermococcus litoralis 0 105 1 195522 Thermococcus nautili species 0 132 1 49899 Thermococcus profundus species 0 104 55802 1 214 0 Thermococcus barophilus species 1 54262 92 Thermococcus chitonophagus species 0 1 342948 species Thermococcus onnurineus 0 78 71998 1 0 species Thermococcus pacificus 112 1 311400 Thermococcus kodakarensis species 0 79 277988 1 0 species Thermococcus thioreducens 112 71997 1 125 0 species Thermococcus gorgonarius 2283796 18 0 clade 2577 0 clade 135 1803510 2 135 genus 0 2 379546 1 379547 species Aciduliprofundum boonei 0 91 44 0 no rank 2633939 1 44 0 Aciduliprofundum sp. MAR08-339 species 673860 1 14 183967 16 1 2442 0 class Thermoplasmata 1234666 1 336 0 no rank 1495144 1 0 methanogenic archaeon ISO4-H5 species 336 8 2301 1 Thermoplasmatales order 0 1350 1 2 46659 153 family 0 0 genus 153 2302 2 61 0 species Thermoplasma volcanium 50339 1 1 2303 Thermoplasma acidophilum species 0 92 231 family 0 1 1747776 1747777 1 0 genus 231 1 1673428 species Cuniculiplasma divulgatum 0 231 228 0 family 46630 1 228 0 genus 46631 1 82076 1 0 Picrophilus torridus species 228 526 no rank 0 1 1919231 species Thermoplasmatales archaeon BRNA1 0 526 1 1054217 211 family 0 2 90142 74968 2 0 genus 211 1 97393 Ferroplasma acidarmanus species 0 130 1 74969 81 species Ferroplasma acidiphilum 0 0 Methanomassiliicoccales order 1 742 1235850 6 2 2517203 2 320 0 family 52 2 1291539 320 1 Candidatus Methanomethylophilus genus 0 1291540 1 268 0 species Candidatus Methanomethylophilus alvus 0 family Methanomassiliicoccaceae 1 420 1577788 3 15 285 genus 0 1 1080709 1406512 1 0 Candidatus Methanomassiliicoccus intestinalis species 285 genus 0 120 1 1607807 1 1577791 120 Candidatus Methanoplasma termitum species 0 8 183980 7 Archaeoglobi class 0 976 1 7 2231 order 0 969 969 family 0 7 2232 2 190818 184 genus 0 123 Geoglobus acetivorans species 0 1 565033 113653 1 61 0 Geoglobus ahangari species genus 0 77 1 54260 0 species Ferroglobus placidus 77 54261 1 708 genus 0 4 2233 137 species Archaeoglobus fulgidus 0 1 2234 1 84156 50 Archaeoglobus profundus species 0 1316941 1 0 species Archaeoglobus sulfaticallidus 313 species Archaeoglobus veneficus 0 208 1 58290 6890 clade 0 39 2283794 183939 14 2843 0 class 2843 1 order Methanococcales 0 1 14 2182 0 family 1366 196117 8 1156 0 genus 196118 6 no rank 0 248 1 2641196 248 0 species Methanocaldococcus sp. FS406-22 644281 1 1301915 1 372 0 Methanocaldococcus bathoardescens species 209 species Methanocaldococcus jannaschii 0 1 2190 1 83171 102 Methanocaldococcus fervens species 0 67760 1 94 0 species Methanocaldococcus infernus 131 0 species Methanocaldococcus vulcanius 73913 1 11 196119 2 1 210 0 genus Methanotorris 199 0 species Methanotorris igneus 2189 1 family 0 1476 5 2183 1 155862 169 genus 0 169 Methanothermococcus okinawensis species 0 1 155863 4 2184 genus 0 1307 Methanococcus vannielii species 0 116 1 2187 793 0 Methanococcus maripaludis species 39152 1 42879 1 0 species Methanococcus aeolicus 242 2188 1 156 0 species Methanococcus voltae 4047 1 Methanobacteria class 0 2 25 183925 1 24 2158 4045 1 Methanobacteriales order 0 7 2159 22 1 3938 0 Methanobacteriaceae family 0 genus Methanothermobacter 1 234 145260 5 2 no rank 0 61 1 2631116 Methanothermobacter sp. CaT2 species 0 61 1 866790 145263 1 83 0 species Methanothermobacter marburgensis 1 145261 species Methanothermobacter wolfeii 0 43 145262 1 45 0 Methanothermobacter thermautotrophicus species genus 0 581 1 2316 2317 1 581 0 Methanosphaera stadtmanae species genus Methanobrevibacter 0 1977 1 7 2172 2 1 230361 Methanobrevibacter millerae species 0 331 0 no rank 475 2638681 2 224719 1 0 species Methanobrevibacter sp. AbM4 259 0 species Methanobrevibacter sp. YE315 216 1609968 1 369 0 Methanobrevibacter smithii species 2173 1 408 Methanobrevibacter olleyae species 0 1 294671 83816 1 0 Methanobrevibacter ruminantium species 392 2160 8 1 0 Methanobacterium genus 1 1139 126 species Methanobacterium subterraneum 0 1 59277 2627676 2 288 0 no rank 1911685 1 0 Methanobacterium sp. MZ-A1 species 137 1 1379702 species Methanobacterium sp. MB1 0 151 221 species Methanobacterium paludis 0 1 868131 1 118062 species Methanobacterium congolense 0 181 2162 1 0 Methanobacterium formicicum species 137 Methanobacterium lacus species 0 185 1 877455 0 family 106 2178 1 2179 1 0 genus 106 1 2180 Methanothermus fervidus species 0 106 1783275 50 3703 0 clade 825 phylum 0 10 651137 0 no rank 244 651142 3 0 genus 151 1825023 2 1603555 1 0 species Candidatus Nitrosotenuis cloacae 81 0 Candidatus Nitrosotenuis sp. AQ6f species 70 1846278 1 1593364 1 93 0 genus 1410606 1 93 0 Candidatus Nitrosopelagicus brevis species class 0 226 3 1643678 0 order 46 1968909 1 0 family 46 1968910 1 0 genus 46 498374 1 46 0 Candidatus Nitrosocaldus islandicus species 2045011 1 2 1033996 order 0 180 family Nitrososphaeraceae 0 180 1 2 1033997 3 177 0 genus 497726 1 1034015 1 0 Nitrososphaera viennensis species 177 4 31932 5 order Nitrosopumilales 0 355 1 350 family 0 3 338190 1 1993653 131 genus 0 1 1898749 Candidatus Nitrosomarinus catalina species 0 131 0 genus 219 338191 2 1 1229909 species Candidatus Nitrosopumilus sediminis 0 89 130 species Candidatus Nitrosopumilus adriaticus 0 1 1580092 1 51967 112 phylum 0 112 genus 0 1 498845 498846 1 112 0 Candidatus Korarchaeum cryptofilum species 2766 phylum 0 39 28889 Thermoprotei class 0 2766 1 39 183924 5 114380 13 552 0 order 1 381 0 Desulfurococcaceae family 9 2272 9 0 genus 78 54258 2 47 Ignicoccus hospitalis species 0 1 160233 0 species Ignicoccus islandicus 31 54259 1 1 477695 26 genus 0 1 1200300 26 species Thermogladius calderae 0 1 54253 genus 0 22 1 54254 Thermosphaera aggregans species 0 22 2279 2 0 genus 183 1 84599 80 species Staphylothermus hellenicus 0 0 species Staphylothermus marinus 103 2280 1 genus 0 63 2 2273 0 species Desulfurococcus mucosus 49 2275 1 94694 1 0 species Desulfurococcus amylolyticus 14 family 0 171 4 2307 74 genus 0 1 54247 0 Hyperthermus butylicus species 74 54248 1 4 2308 2 1 36 0 genus Pyrodictium Pyrodictium delaneyi species 0 32 1 1273541 1 54251 61 genus 0 0 species Pyrolobus fumarii 61 54252 1 2266 13 2 0 order Thermoproteales 1 815 114378 5 367 0 family 4 5 2268 367 1 genus Thermofilum 0 1 1483572 species Thermofilum carboxyditrophus 0 154 2269 1 0 Thermofilum pendens species 58 1550241 1 0 species Thermofilum uzonense 20 131 species Thermofilum adornatus 0 1 1365176 family Thermoproteaceae 0 446 1 7 2267 4 2270 2 206 0 genus 1 184117 Thermoproteus uzoniensis species 0 75 131 Thermoproteus tenax species 0 1 2271 81 0 genus 76886 1 Caldivirga maquilingensis species 0 81 1 76887 genus 0 109 2 164450 46 species Vulcanisaeta moutnovskia 0 1 985052 164451 1 0 species Vulcanisaeta distributa 63 46 0 genus 2276 1 1 2277 species Pyrobaculum islandicum 0 46 order 0 1206 9 2281 family 0 1206 9 118883 0 genus 118 12914 1 Acidianus hospitalis species 0 118 1 563177 3 2284 4 1 549 0 genus Sulfolobus 43080 1 0 species Sulfolobus islandicus 351 1 2641160 76 no rank 0 1891280 1 76 0 Sulfolobus sp. A20 species 2285 1 119 0 Sulfolobus acidocaldarius species 186 0 genus 41980 2 0 species Metallosphaera sedula 80 43687 1 106 Metallosphaera cuprina species 0 1 1006005 69655 1 0 genus 251 1 111955 Sulfolobus tokodaii species 0 251 102 genus 0 1 2100760 2287 1 102 0 species Sulfolobus solfataricus 188 0 order 871006 3 0 family 89 871007 2 2 105850 6 genus Acidilobus 0 89 1 1 242703 83 Acidilobus saccharovorans species 0 1 255472 family 0 99 200414 1 99 0 genus 200415 1 0 species Caldisphaera lagunensis 99 clade 0 23 1 1783276 1 1801631 23 phylum 0 23 0 genus 2490204 1 23 0 Candidatus Micrarchaeota archaeon Mia14 species 1920749 1 0 name 1 0 0 Bacteria superkingdom 1 31925492 2 4391 79 200918 39 0 phylum 10611 188708 39 5 0 class Thermotogae 1 10611 1125 order 0 3 1643946 family 0 1125 3 1643948 651456 2 0 genus 834 274 species Kosmotoga olearia 0 1 651457 0 species Kosmotoga pacifica 560 1330330 1 291 0 genus 1184396 1 1184387 1 0 species Mesotoga prima 291 28 2419 11 Thermotogales order 0 6670 1 2419 1 family Fervidobacteriaceae 0 5 10 1643950 1 4 2422 1096 1 Fervidobacterium genus 0 93466 1 0 species Fervidobacterium pennivorans 384 352 species Fervidobacterium nodosum 0 1 2424 0 species Fervidobacterium islandicum 359 2423 1 1 1318 0 genus Thermosipho 2 2420 5 575 0 no rank 2676525 2 1437364 1 286 0 Thermosipho sp. 1070 species 289 0 species Thermosipho sp. 1063 1462747 1 species Thermosipho melanesiensis 0 321 1 46541 Thermosipho africanus species 0 420 1 2421 Thermotogaceae family 0 4240 1 17 188709 8 0 Pseudothermotoga genus 1 1699 1643951 5 30 472 0 species Pseudothermotoga thermarum 119394 1 Pseudothermotoga elfii species 0 450 1 38322 0 Pseudothermotoga lettingae species 459 177758 1 species Pseudothermotoga hypogea 0 288 1 57487 0 genus Thermotoga 1 2533 2335 11 42 1 1508420 238 species Thermotoga profunda 0 0 no rank 863 2631113 4 0 Thermotoga sp. Cell2 species 196 1157947 1 species Thermotoga sp. 2812B 0 208 1 1157948 1 126740 178 species Thermotoga sp. RQ2 0 126738 1 281 0 species Thermotoga sp. RQ7 93930 1 0 Thermotoga naphthophila species 253 1 2336 262 species Thermotoga maritima 0 93929 1 173 0 species Thermotoga petrophila 0 species Thermotoga neapolitana 275 2337 1 1 1508419 Thermotoga caldifontis species 0 427 1643947 7 1 0 Petrotogales order 1 2811 6 1643949 family 0 2810 476 1 Defluviitoga genus 0 3 2 1511648 1006576 1 473 0 Defluviitoga tunisiensis species genus 0 454 1 28236 1 69499 454 species Petrotoga mobilis 0 0 Marinitoga genus 1 1880 160798 3 13 935 0 Marinitoga piezophila species 149715 1 2640159 1 932 0 no rank 1545835 1 932 0 species Marinitoga sp. 1137 1783270 366 16800565 0 clade 2 456828 phylum 0 292 3 2 456826 292 1 genus Candidatus Cloacimonas 0 1 456827 Candidatus Cloacimonas acidaminovorans species 0 289 0 clade 16795060 68336 351 16779934 1 Bacteroidetes phylum 0 55 323 976 66403 1 Cytophagia class 0 66 55 768503 0 order Cytophagales 1 66337 768507 54 250 16 1853232 86 Hymenobacteraceae family 0 32501 1 23 3 323449 4678 1 Pontibacter genus 0 400092 1 0 Pontibacter korlensis species 1733 388950 1 2922 0 Pontibacter akesuensis species 8 89966 189 genus Hymenobacter 0 22274 1 1 1411621 species Hymenobacter sedentarius 0 2684 species Hymenobacter swuensis 0 3330 1 1446467 0 no rank 16071 2615202 5 1 1484116 Hymenobacter sp. PAMC 26554 species 0 3133 1 1484118 3689 species Hymenobacter sp. PAMC 26628 0 0 Hymenobacter sp. APR13 species 4163 1356852 1 1385663 1 2106 0 Hymenobacter sp. DG25A species 0 Hymenobacter sp. DG25B species 2980 1385664 1 0 Rufibacter genus 1 5463 1379908 4 28 1 512763 species Rufibacter tibetensis 0 1976 2 2639626 no rank 0 3459 1379910 1 0 species Rufibacter sp. DG31D 1838 1379909 1 0 Rufibacter sp. DG15C species 1621 2 2762301 877 family 0 877 1 Marivirga genus 0 15 2 869806 862 species Marivirga tractuosa 0 1 1006 42 17 89373 20237 1 Cytophagaceae family 0 1645 1 Fibrella genus 0 2 2 861914 2620963 1 1643 0 no rank 0 Fibrella sp. ES10-3-2-2 species 1643 1834519 1 2 105 1 genus Runella 0 2963 1 106 1 0 species Runella slithyformis 2962 1 2718 0 Dyadobacter genus 1 120831 2 1 94254 Dyadobacter fermentans species 0 2717 1 1574 0 Leadbetterella genus 1 319458 2 1573 0 species Leadbetterella byssophila 316068 1 11 107 6 1 9520 0 genus Spirosoma Spirosoma radiotolerans species 0 1686 1 1379870 0 Spirosoma rigui species 2258 564064 1 1211326 1 1468 0 Spirosoma aerolatum species 1 2057025 species Spirosoma sp. HA7 0 1952 2145 0 species Spirosoma montaniterrae 1178516 1 1 1775 0 genus Cytophaga 16 978 2 1759 0 Cytophaga hutchinsonii species 985 1 2022 0 family 1853234 1 genus 0 2022 1 59740 2664020 1 0 no rank 2022 1085624 1 2022 0 Persicobacter sp. JZB09 species 3 1937968 2 family Bernardetiaceae 0 1081 1 5 1937972 2 1 1079 0 Bernardetia genus 1074 species Bernardetia litoralis 0 1 999 1 4196 0 family Flammeovirgaceae 9 200667 3 340671 1 2270 0 no rank 1 1257021 2270 Flammeovirgaceae bacterium 311 species 0 59739 1 1917 0 genus 1 2637820 no rank 0 1917 0 species Flammeovirga sp. MY04 1917 1191459 1 2 1501348 535 family 0 1 273135 374 genus 0 374 no rank 0 1 2641185 1 249402 374 species Cardinium endosymbiont of Encarsia pergandiella 0 161 0 genus 281119 1 Candidatus Amoebophilus asiaticus species 0 161 1 281120 family Cyclobacteriaceae 0 4638 1 9 563798 1 1 2 390846 1708 1 Echinicola genus 0 1707 Echinicola vietnamensis species 0 1 390884 1 671 0 Algoriphagus genus 3 246875 2 1 1727163 Algoriphagus sp. M8-2 species 0 668 68288 3 4 0 genus Cyclobacterium 1 1411 1 104 species Cyclobacterium marinum 0 726 species Cyclobacterium amurskyense 0 681 1 320787 1 232244 genus 0 847 0 Belliella baltica species 847 232259 1 117747 24 9 0 class Sphingobacteriia 1 28602 0 order Sphingobacteriales 1 28593 200666 23 27 0 family Sphingobacteriaceae 1 28566 84566 22 51 28 28453 6 1 7946 0 Sphingobacterium genus 0 species Sphingobacterium mizutaii 1540 1010 1 0 no rank 6378 2609468 4 1538644 1 0 species Sphingobacterium sp. ML3W 904 2078 Sphingobacterium sp. G1-14 species 0 1 2003121 1933220 1 0 species Sphingobacterium sp. B29 1986 Sphingobacterium sp. 21 species 0 1410 1 743722 423349 4 17 0 Mucilaginibacter genus 1 5523 1413 0 species Mucilaginibacter sp. BJC16-A31 1234841 1 1867 species Mucilaginibacter gotjawali 0 1 1550579 1 2617802 no rank 0 2226 1 1300914 Mucilaginibacter sp. PAMC 26640 species 0 2226 0 Solitalea genus 1 2032 929509 2 7 995 1 0 Solitalea canadensis species 2025 Pedobacter genus 0 9441 1 6 84567 33 1897 species Pedobacter steynii 0 1 430522 1 2628915 no rank 0 1613 1 1727164 1613 Pedobacter sp. PACM 27299 species 0 1494 0 species Pedobacter cryoconitis 188932 1 0 species Pedobacter heparinus 2900 984 1 363852 1 0 Pedobacter ginsengisoli species 1504 1649482 2 4 0 Pseudopedobacter genus 1 1820 151895 1 0 Pseudopedobacter saltans species 1816 1 84568 1753 no rank 0 1986952 1 1753 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 6905 1 order Bacteroidetes Order II. Incertae sedis 0 99 7 1100069 0 Rhodothermaceae family 1 6806 563843 6 40 6 2 146918 1089 1 Salinibacter genus 0 1083 0 Salinibacter ruber species 146919 1 1196022 1 2293 0 no rank 1779382 1 2293 0 Rhodothermaceae bacterium RA species 3384 1 genus Rhodothermus 0 10 2 29548 3374 Rhodothermus marinus species 0 1 29549 16 1853228 10 Chitinophagia class 0 16375 1 15 1853229 30 order Chitinophagales 0 16365 1 family Chitinophagaceae 0 16335 1 14 563835 48 0 genus 2052 1769012 1 1 2636138 2052 no rank 0 0 species Arachidicoccus sp. BS20 2052 1850526 1 2 649460 1 genus Filimonas 0 2035 1 477680 1 0 species Filimonas lacunae 2034 3 379899 3 genus Niabella 0 3589 1 0 species Niabella ginsenosidivorans 1396 1176587 1 446683 1 0 Niabella soli species 2190 398041 2 10 0 Flavisolibacter genus 1 934 1492898 1 0 species Flavisolibacter tropicus 924 13 354354 2 1 2404 0 genus Niastella 354356 1 0 species Niastella koreensis 2391 79328 3 5 0 Chitinophaga genus 1 5273 79329 1 0 Chitinophaga pinensis species 2407 2861 Chitinophagaceae bacterium 13 species 0 1 2029983 50 117743 143 1 146645 0 class Flavobacteriia 142 200644 133 order Flavobacteriales 0 146595 1 313602 2 348 0 no rank 1940138 1 0 genus 205 Candidatus Walczuchella monophlebidarum species 0 205 1 1415657 143 genus 0 1 336809 1 336810 species Candidatus Sulcia muelleri 0 143 14 10 39782 1087 1 family Blattabacteriaceae 0 6 34098 9 1 1073 0 Blattabacterium genus 140 species Blattabacterium punctulatus 0 1 164514 0 Blattabacterium cuenoti species 139 1653831 1 788 no rank 0 6 2647581 60 species Blattabacterium sp. (Blatta orientalis) 0 1 367806 130 0 species Blattabacterium sp. (Nauphoeta cinerea) 1316444 1 0 species Blattabacterium sp. (Periplaneta americana) 84 367488 1 0 Blattabacterium sp. (Blattella germanica) species 180 624186 1 1 39768 166 species Blattabacterium sp. (Mastotermes darwiniensis) 0 168 0 Blattabacterium sp. (Blaberus giganteus) species 1186051 1 0 family Cryomorphaceae 2 246874 1 family 0 1201 2 1333713 Owenweeksia genus 0 1201 1 2 267986 2 1199 species Owenweeksia hongkongensis 0 1 253245 20 2762318 55495 family 0 8495 1 Elizabethkingia genus 0 59 6 308865 Elizabethkingia genomosp. 3 species 0 1153 1 1756149 Elizabethkingia miricola species 0 1820 1 172045 0 Elizabethkingia anophelis species 3012 1117645 1 0 species Elizabethkingia genomosp. 4 808 1756150 1 1 238 1643 species Elizabethkingia meningoseptica 0 2782232 10 16227 0 no rank 9 59732 150 genus Chryseobacterium 0 13385 1 1 1265445 species Chryseobacterium camelliae 0 1002 2807 Chryseobacterium indologenes species 0 1 253 no rank 0 3717 3 2593645 2015076 1 1000 0 Chryseobacterium sp. T16E-39 species 1601 0 Chryseobacterium sp. IHB B 17019 species 1721091 1 Chryseobacterium sp. StRB126 species 0 1116 1 878220 1324352 1 0 Chryseobacterium gallinarum species 3326 558152 1 0 Chryseobacterium piperi species 1001 0 species Chryseobacterium glaciei 1382 1685010 1 2842 0 genus 2782228 1 536441 1 0 Chryseobacterium taklimakanense species 2842 1 34084 genus 0 3304 0 species Riemerella anatipestifer 3304 34085 1 1 1013 genus 0 541 541 species Weeksella virosa 0 1 1014 0 Ornithobacterium genus 1 26928 28250 2 161 26767 0 species Ornithobacterium rhinotracheale 28251 1 86910 1 Flavobacteriaceae family 0 1796 102 49546 0 genus Zobellia 1 1416 112040 2 11 1 63186 1405 species Zobellia galactanivorans 0 Lacinutrix genus 0 1764 1 4 291183 3 1313 0 no rank 2647285 2 847 0 species Lacinutrix sp. Bg11-31 2057808 1 983544 1 466 0 Lacinutrix sp. 5H-3-7-4 species 1 1486034 species Lacinutrix venerupis 0 448 2 104267 5 1 2544 0 Tenacibaculum genus 850 species Tenacibaculum jejuense 0 1 584609 550 0 Tenacibaculum todarodis species 1850252 1 species Tenacibaculum maritimum 0 603 1 107401 539 0 Tenacibaculum dicentrarchi species 669041 1 1204360 1 641 0 genus 1 762954 641 species Siansivirga zeaxanthinifaciens 0 0 genus Gramella 1 4240 292691 5 4 0 Gramella sp. LPB0144 species 949 1913577 1 2126553 1 1219 0 Gramella sp. SH35 species 901 0 species Gramella forsetii 411153 1 1486245 1 1167 0 species Gramella flava Capnocytophaga genus 0 22422 1 15 1016 89 1 28188 1428 Capnocytophaga canimorsus species 0 28189 1 0 species Capnocytophaga cynodegmi 1128 2640652 6 7911 0 no rank 1853 species Capnocytophaga sp. oral taxon 878 0 1 1316596 1402 species Capnocytophaga sp. oral taxon 864 0 1 1316593 628 Capnocytophaga sp. H2931 species 0 1 1945657 0 Capnocytophaga sp. oral taxon 323 species 1814 1705617 1 1 209053 1438 Capnocytophaga sp. ChDC OS43 species 0 1 1945658 species Capnocytophaga sp. H4358 0 776 1647 0 Capnocytophaga leadbetteri species 327575 1 1848904 1 0 Capnocytophaga stomatis species 1721 1705 species Capnocytophaga ochracea 0 1 1018 1 45243 Capnocytophaga haemolytica species 0 1886 Capnocytophaga sputigena species 0 3704 1 1019 1017 1 1203 0 species Capnocytophaga gingivalis 1 1649495 390 genus 0 390 no rank 0 1 2622645 1936081 1 0 Seonamhaeicola sp. S2-3 species 390 5 252356 2 Maribacter genus 0 3680 1 2615042 3 2621 0 no rank 1 1644130 839 species Maribacter sp. 1_2014MBL_MicDiv 0 1 1836467 Maribacter sp. T28 species 0 1001 313603 1 0 species Maribacter sp. HTCC2170 781 1 1178778 Maribacter cobaltidurans species 0 1057 2700084 1 959 0 genus 1 1850246 959 Lutibacter sp. LPB0138 species 0 1039 genus 0 1 261827 1736674 1 1039 0 Algibacter alginicilyticus species genus 0 519 1 1176327 1 2636237 no rank 0 519 0 species Aureitalea sp. RR4-38 519 2094025 1 Nonlabens genus 0 1609 1 5 363408 5 2 2615035 no rank 0 801 Nonlabens sp. MB-3u-79 species 0 490 1 2058134 1476901 1 311 0 Nonlabens sp. MIC269 species 467 Nonlabens dokdonensis species 0 1 328515 species Nonlabens sediminis 0 336 1 319236 7828 1 Myroides genus 0 71 5 76831 76832 1 4418 0 Myroides odoratimimus species no rank 0 2206 2 2642485 species Myroides sp. ZB35 0 1225 1 1458492 1 1583100 981 species Myroides sp. A21 0 1133 0 Myroides profundi species 480520 1 genus 0 889 1 143222 1 2633436 no rank 0 889 889 species Salegentibacter sp. T436 0 1 1729720 30 6 52959 4202 1 genus Polaribacter 0 196858 3 1911 0 no rank 1 2058137 Polaribacter sp. ALD11 species 0 687 779 Polaribacter sp. MED152 species 0 1 313598 0 Polaribacter sp. BM10 species 445 1529069 1 1 1774273 1237 species Polaribacter vadi 0 1024 species Polaribacter reichenbachii 0 1 996801 genus Formosa 0 841 1 3 225842 3 2 2644710 no rank 0 838 0 species Formosa sp. Hel1_33_131 603 1336794 1 Formosa sp. Hel3_A1_48 species 0 235 1 1336795 0 Muricauda genus 1 1714 111500 3 1 516051 1 0 species Muricauda lutaonensis 700 1 111501 1013 Muricauda ruestringensis species 0 614 genus 0 1 216431 614 species Croceibacter atlanticus 0 1 313588 1 2 393005 815 1 Tamlana genus 0 0 Tamlana sp. UJ94 species 814 2069432 1 0 Cellulophaga genus 1 2598 104264 4 9 1 59600 663 species Cellulophaga algicola 0 1 76594 Cellulophaga baltica species 0 1012 1 979 species Cellulophaga lytica 0 914 336276 1 693 0 genus 2615019 1 693 0 no rank 693 species Olleya sp. Bg11-27 0 1 2058135 genus 0 1369 1 417127 Zunongwangia profunda species 0 1369 1 398743 2 358023 20 Lutibacter genus 0 837 1 817 0 Lutibacter profundi species 1622118 1 252306 2 10 0 Robiginitalea genus 1 1649 1639 species Robiginitalea biformata 0 1 252307 1227 0 genus 286104 2 2615021 2 0 no rank 1227 species Winogradskyella sp. PG-2 0 584 1 754409 1936080 1 643 0 Winogradskyella sp. J14-2 species 0 genus 423 83612 1 423 0 Psychroflexus torquis species 57029 1 1980 no rank 0 2 61432 1018 0 Flavobacteriaceae bacterium 3519-10 species 531844 1 0 Flavobacteriaceae bacterium UJ101 species 962 1150389 1 genus 0 988 1 178469 616991 1 0 species Arenibacter algicola 988 567 0 genus 1518147 1 1790137 1 567 0 Wenyingzhuangia fucanilytica species 4 326319 1 genus Dokdonia 0 1391 1 no rank 0 928 2 2615033 species Dokdonia sp. 4H-3-7-5 0 463 1 983548 1 313590 Dokdonia sp. MED134 species 0 465 462 Dokdonia donghaensis species 0 1 326320 2 153265 3 Aequorivita genus 0 619 1 1 101385 616 species Aequorivita sublithincola 0 0 genus 932 1209327 1 Flavivirga eckloniae species 0 932 1 1803846 1 389486 genus 0 717 717 no rank 0 1 2648869 1 1453352 717 species Sediminicola sp. YIK13 0 0 Flavobacterium genus 1 10998 237 9 13 1 996 species Flavobacterium columnare 0 1507 1847 0 Flavobacterium commune species 1306519 1 1 312277 703 species Flavobacterium indicum 0 species Flavobacterium branchiophilum 0 727 1 55197 Flavobacterium gilvum species 0 1179 1 1492737 437 0 Flavobacterium psychrophilum species 96345 1 986 1 0 Flavobacterium johnsoniae species 3570 0 Flavobacterium crassostreae species 1015 1763534 1 177 0 family 1755828 1 177 0 genus 1755829 1 Ichthyobacterium seriolicida species 0 177 1 242600 3 1853230 11 Crocinitomicaceae family 0 1242 1 7 2 332102 1231 1 genus Fluviicola 0 1 191579 Fluviicola taffensis species 0 1224 200643 72 86 0 class Bacteroidia 1 16512806 0 order Bacteroidales 1 16503886 171549 60 2223 1 185291 1886 no rank 0 species Bacteroidales bacterium CF 0 1886 1 1400053 1 2005520 6 1 21725 0 family Dysgonamonadaceae 30 2 294702 8702 1 genus Proteiniphilum 0 8672 0 Proteiniphilum saccharofermentans species 1642647 1 1 1784836 genus 0 3921 0 Fermentimonas caenicola species 3921 1562970 1 2 307628 8 genus Petrimonas 0 9101 1 1642646 1 0 Petrimonas mucosa species 9093 Tannerellaceae family 0 1731329 1 7 2005525 201 375288 3 221 0 Parabacteroides genus 1 1695626 695076 Parabacteroides distasonis species 0 1 823 1 2649774 no rank 0 1000329 2025876 1 1000329 0 Parabacteroides sp. CT06 species 35502 1 Tannerella genus 0 67 3 195950 0 species Tannerella forsythia 20150 28112 1 2620507 1 0 no rank 15285 Tannerella sp. oral taxon HOT-286 species 0 15285 1 712710 171550 5 51 0 family Rikenellaceae 1 370436 1 3701 0 Mucinivorans genus 9 1611681 2 1433126 1 3692 0 Mucinivorans hirudinis species 1 366684 0 genus Alistipes 93 239759 2 214856 1 0 Alistipes finegoldii species 366591 23 171552 11 1 281936 0 Prevotellaceae family 317 10 838 281913 1 genus Prevotella 0 10313 0 species Prevotella denticola 28129 1 1 76123 5572 species Prevotella enoeca 0 0 species Prevotella intermedia 216778 28131 1 species Prevotella melaninogenica 0 7474 1 28132 1177574 1 0 species Prevotella jejuni 6688 6090 species Prevotella fusca 0 1 589436 2638335 1 0 no rank 3078 652716 1 3078 0 Prevotella sp. oral taxon 299 species 12222 0 species Prevotella ruminicola 839 1 species Prevotella dentalis 0 13381 1 52227 17266 1 family Porphyromonadaceae 0 40 4 171551 3 836 15 genus Porphyromonas 0 17226 1 28123 1 4207 0 species Porphyromonas asaccharolytica 837 1 0 Porphyromonas gingivalis species 13004 333046 5 0 no rank 3875524 3 909656 genus 0 3874180 730423 0 species Bacteroides dorei 357276 1 1 821 3021423 species Bacteroides vulgatus 0 122334 0 species Bacteroides salanitronis 376805 1 2 511434 4 Candidatus Azobacteroides genus 0 1344 1 0 species Candidatus Azobacteroides pseudotrichonymphae 1340 511435 1 4701 1 Paludibacteraceae family 0 2 3 2005523 6 346096 2 1 4699 0 Paludibacter genus 4693 0 species Paludibacter propionicigenes 185300 1 0 family Odoribacteraceae 1 194141 1853231 3 1 283168 2 6 0 genus Odoribacter 1 194140 0 species Odoribacter splanchnicus 194134 28118 1 3 2005519 48 Barnesiellaceae family 0 224776 1 0 genus Barnesiella 1 224728 397864 2 133 397865 1 0 species Barnesiella viscericola 224595 815 11 52 0 Bacteroidaceae family 1 9777943 1 9777891 0 genus Bacteroides 138613 816 10 1 1796613 species Bacteroides caecimuris 0 1103948 28119 1 0 species Bacteroides zoogleoformans 208339 995638 0 Bacteroides fragilis species 817 1 246787 1 0 species Bacteroides cellulosilyticus 2870885 47678 1 0 Bacteroides caccae species 676118 species Bacteroides helcogenes 0 367039 1 290053 species Bacteroides thetaiotaomicron 0 1354762 1 818 species Bacteroides heparinolyticus 0 270070 1 28113 1792479 species Bacteroides ovatus 0 1 28116 order Marinilabiliales 0 8834 1 11 1970189 6 family Prolixibacteraceae 0 4145 1 2 1471398 1 genus 0 4144 1 1471399 Draconibacterium orientale species 0 4144 1 1168034 0 family Salinivirgaceae 1 1367 1970190 3 2 5 2 1970191 1365 1 genus Salinivirga 0 1307839 1 1360 0 species Salinivirga cyanobacteriivorans 2 1573805 1 family Marinifilaceae 0 1848 1 2060722 1 1847 0 genus 1 1717717 Marinifilaceae bacterium SPP2 species 0 1847 3 558415 4 Marinilabiliaceae family 0 1468 1 1 1464 0 genus Alkalitalea 1 1193324 2 species Alkalitalea saponilacus 0 1463 1 889453 class Saprospiria 0 2143 1 5 1937959 7 Saprospirales order 0 2136 1 4 1936988 3 89374 1 345 0 family 0 genus 345 1007 1 1 1008 345 Saprospira grandis species 0 0 family Haliscomenobacteraceae 1 1788 1937961 2 1 2349 1 0 genus 1787 1 2350 Haliscomenobacter hydrossis species 0 1787 1090 22 0 phylum 13415 13415 1 class Chlorobia 0 53 22 191410 0 order Chlorobiales 1 13362 191411 21 138 32 191412 20 1 13224 0 Chlorobiaceae family 1 100715 2 1 632 0 Chloroherpeton genus 1 100716 631 Chloroherpeton thalassium species 0 274493 8 5190 0 no rank 3 1099 30 genus Pelodictyon 0 2006 1 1 34090 Pelodictyon phaeoclathratiforme species 0 643 1 1100 Pelodictyon luteolum species 0 1333 3184 1 genus Chlorobium 0 5 5 1091 species Chlorobium limicola 0 913 1 1092 0 Chlorobium phaeobacteroides species 1299 1096 1 409 species Chlorobium chlorochromatii 0 1 337090 1094 1 0 Chlorobium phaeovibrioides species 558 7 5 1101 3148 1 genus Prosthecochloris 0 1 1102 750 species Prosthecochloris aestuarii 0 2632826 3 2391 0 no rank 808 0 species Prosthecochloris sp. CIB 2401 1868325 1 0 species Prosthecochloris sp. GSB1 1094 281093 1 1974213 1 0 species Prosthecochloris sp. HL-130-GSB 489 1 4222 0 Chlorobaculum genus 33 256319 4 1252 0 Chlorobaculum parvum species 274539 1 1097 1 0 Chlorobaculum tepidum species 1111 0 species Chlorobaculum limnaeum 1826 274537 1 1134404 6 1711 0 phylum 1 1711 0 class Ignavibacteria 2 795747 6 795748 5 1 0 order Ignavibacteriales 1 1709 1 795749 748 family 0 0 genus 748 795750 1 748 0 Ignavibacterium album species 591197 1 3 1334117 3 1 960 0 Melioribacteraceae family 957 1 Melioribacter genus 0 3 2 1134403 0 species Melioribacter roseus 954 1134405 1 3658 phylum 0 8 142182 1 3658 0 Gemmatimonadetes class 17 219685 8 219686 7 115 0 Gemmatimonadales order 1 3641 219687 6 17 0 Gemmatimonadaceae family 1 3526 1834 1 Gemmatimonas genus 0 15 3 173479 1001 0 species Gemmatimonas aurantiaca 173480 1 1379270 1 818 0 species Gemmatimonas phototrophica genus Gemmatirosa 0 1675 1 2 1706036 6 1669 0 species Gemmatirosa kalamazoonesis 861299 1 0 phylum 1555 65842 5 class Fibrobacteria 0 1555 1 5 204430 6 2 218872 4 1 1549 0 Fibrobacterales order 1 3 204431 1547 1 Fibrobacteraceae family 0 1 832 2 1 1546 0 Fibrobacter genus 0 species Fibrobacter succinogenes 1545 833 1 phylum 0 4183 10 508458 649775 10 15 0 class Synergistia 1 4183 1 4168 0 Synergistales order 9 649776 9 161 8 649777 4159 1 family Synergistaceae 0 1 81466 437 genus 0 437 Aminobacterium colombiense species 0 1 81468 8 508459 2 1 2434 0 genus Cloacibacillus 1 1197717 Cloacibacillus porcorum species 0 2426 300 0 genus 49894 1 300 species Acetomicrobium mobile 0 1 97477 622 1 genus Thermanaerovibrio 0 2 2 81461 1 81462 Thermanaerovibrio acidaminovorans species 0 620 336260 1 205 0 genus 205 0 Thermovirga lienii species 336261 1 23 32066 21974 phylum 0 203490 23 22 0 class Fusobacteriia 1 21974 25 22 203491 21952 1 Fusobacteriales order 0 Fusobacteriaceae family 0 15421 1 12 203492 19 2 167639 1 genus Ilyobacter 0 1150 1 1 167642 Ilyobacter polytropus species 0 1149 0 genus Fusobacterium 1 14252 848 9 60 0 Fusobacterium hwasookii species 1298 1583098 1 0 Fusobacterium nucleatum species 4619 851 1 979 Fusobacterium mortiferum species 0 1 850 550 species Fusobacterium necrophorum 0 1 859 Fusobacterium gonidiaformans species 0 940 1 849 856 1 0 Fusobacterium varium species 1980 1 861 Fusobacterium ulcerans species 0 1224 1 860 2602 species Fusobacterium periodonticum 0 1129771 9 23 0 family Leptotrichiaceae 1 6506 601 0 genus 34104 1 601 species Streptobacillus moniliformis 0 1 34105 0 genus 1026 32068 1 0 species Sebaldella termitidis 1026 826 1 genus 0 946 1 168808 1 187101 species Sneathia amnii 0 946 0 genus Leptotrichia 1 3910 32067 5 5 1 40542 1083 species Leptotrichia buccalis 0 3 2633022 no rank 0 2822 1785996 1 907 0 Leptotrichia sp. oral taxon 847 species 1 712368 747 species Leptotrichia sp. oral taxon 498 0 1168 0 Leptotrichia sp. oral taxon 212 species 712357 1 200940 8 972 0 phylum 0 class Thermodesulfobacteria 1 972 67799 8 1 1 971 0 Thermodesulfobacteriales order 3 188710 7 6 188711 7 family Thermodesulfobacteriaceae 0 968 1 1 241192 2 1 209 0 genus Thermodesulfatator 1 171695 208 Thermodesulfatator indicus species 0 565 genus 0 2 1740 1741 1 0 Thermodesulfobacterium commune species 180 1295609 1 0 Thermodesulfobacterium geofontis species 385 187 genus 0 1 444090 1 1653476 187 species Caldimicrobium thiodismutans 0 1486778 1 phylum Proteobacteria 0 553 1989 1224 330163 1 class Betaproteobacteria 0 686 347 28216 32003 41 103 0 Nitrosomonadales order 1 13887 2043 1 Gallionellaceae family 0 44 5 90627 Sideroxydans genus 0 1157 1 2 314343 7 0 species Sideroxydans lithotrophicus 1150 63745 1 1 842 0 genus Gallionella 2 96 2 840 0 species Gallionella capsiferriformans 370405 1 206379 12 44 0 Nitrosomonadaceae family 1 3863 8 4 35798 1686 1 genus Nitrosospira 0 Nitrosospira lacus species 0 507 1 1288494 448 0 species Nitrosospira multiformis 1231 1 1 35799 723 Nitrosospira briensis species 0 13 914 7 1 2133 0 genus Nitrosomonas 1 915 357 Nitrosomonas europaea species 0 916 1 317 0 species Nitrosomonas eutropha 0 no rank 535 2609265 2 153948 1 290 0 Nitrosomonas sp. AL212 species 245 0 species Nitrosomonas sp. Is79A3 261292 1 1 44577 467 species Nitrosomonas ureae 0 444 0 Nitrosomonas communis species 44574 1 2008790 2 0 family 568 0 genus Thiobacillus 1 568 919 2 19 0 species Thiobacillus denitrificans 549 36861 1 70 5 2008793 2394 1 Sterolibacteriaceae family 0 16 378210 2 1 1032 0 genus Methyloversatilis no rank 0 1016 1 2639971 1 1842540 species Methyloversatilis sp. RAC08 0 1016 25 1054211 2 1 1292 0 Sulfuritalea genus 748811 1 1267 0 Sulfuritalea hydrogenivorans species 4 2772226 family 0 1520 6 1778653 2 1 808 0 Sulfuriferula genus 802 no rank 0 1 2637784 species Sulfuriferula sp. AH1 0 802 1 1985873 2 935200 10 Sulfuricella genus 0 712 1 649841 1 702 0 species Sulfuricella denitrificans 12 32011 21 Methylophilaceae family 0 3396 1 647 1 genus Methylobacillus 0 2 2 404 1 405 species Methylobacillus flagellatus 0 645 0 Methylovorus genus 1 1337 81682 3 19 1 266009 Methylovorus glucosotrophus species 0 763 555 0 no rank 2634027 1 887061 1 555 0 species Methylovorus sp. MP688 282 genus 0 2 1679002 1 1581680 184 Candidatus Methylopumilus turicensis species 0 Candidatus Methylopumilus planktonicus species 0 98 1 1581557 662 1 Methylotenera genus 0 5 3 359407 1 1055487 215 Methylotenera versatilis species 0 Methylotenera mobilis species 0 442 1 359408 0 genus 447 16 1 1 2630143 no rank 0 447 447 0 species Methylophilus sp. TWE2 1662285 1 80840 233 3346 0 order Burkholderiales 1 268155 0 no rank 14315 224471 17 0 genus Thiomonas 1 1598 32012 2 32 926 1 1566 0 Thiomonas intermedia species 0 genus Methylibium 1 1235 316612 2 36 Methylibium petroleiphilum species 0 1199 1 105560 2 88 38 Leptothrix genus 0 1933 1 34029 1 1895 0 species Leptothrix cholodnii 2 65047 41 Mitsuaria genus 0 1509 1 1468 no rank 0 1 2648776 1658665 1 0 species Mitsuaria sp. 7 1468 1 413882 [Polyangium] brachysporum species 0 1484 28067 2 80 0 Rubrivivax genus 1 2051 1971 species Rubrivivax gelatinosus 0 1 28068 34 2 318147 1127 1 Paucibacter genus 0 1093 no rank 0 1 2642959 1768242 1 1093 0 Paucibacter sp. KCTC 42545 species 1885 1 genus Roseateles 0 216 2 93681 1 76731 Roseateles depolymerans species 0 1669 1493 1 genus Rhizobacter 0 68 2 212743 0 Rhizobacter gummiphilus species 1425 946333 1 379 75682 28 1 48823 0 Oxalobacteraceae family 4 202907 105 Collimonas genus 0 4832 1 279058 1 0 species Collimonas arenae 1748 279113 1 1376 0 species Collimonas pratensis species Collimonas fungivorans 0 1603 1 158899 149698 6 243 0 genus Massilia 1 8333 2609279 2 0 no rank 3179 1678028 1 0 Massilia sp. NR 4-1 species 1769 1 1707785 species Massilia sp. WG5 0 1410 1 2045208 1388 species Massilia sp. B2 0 1854 0 species Massilia sp. ZMN-3 2072590 1 1669 species Massilia putida 0 1 1141883 19335 genus 0 1 846 19335 0 species Oxalobacter formigenes 847 1 genus Janthinobacterium 0 7254 1 7 29580 88 1 368607 1537 species Janthinobacterium svalbardensis 0 4403 no rank 0 4 2610881 0 Janthinobacterium sp. B9-8 species 538 1236179 1 species Janthinobacterium sp. LM6 0 1488 1 1938606 1721 0 species Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 1 1 375286 Janthinobacterium sp. Marseille species 0 656 1226 Janthinobacterium agaricidamnosum species 0 1 55508 3 303379 3 1 1045 0 genus Herminiimonas species Herminiimonas arsenitoxidans 0 578 1 1809410 1 204773 464 species Herminiimonas arsenicoxydans 0 1 7645 0 genus Herbaspirillum 400 963 6 2624150 1 1073 0 no rank 0 Herbaspirillum sp. meg3 species 1073 2025949 1 92645 1 0 Herbaspirillum frisingense species 1750 1575 Herbaspirillum rubrisubalbicans species 0 1 80842 0 species Herbaspirillum seropedicae 1772 964 1 1075 Herbaspirillum hiltneri species 0 1 341045 90610 1 family Burkholderiaceae 0 588 84 119060 0 genus Polynucleobacter 1 665 44013 4 2 193 0 Polynucleobacter duraquae species 1835254 1 species Polynucleobacter necessarius 0 174 1 576610 1 576611 296 species Polynucleobacter asymbioticus 0 1 2571159 456 genus 0 456 Paraburkholderia rhizoxinica species 0 1 412963 248 5 48736 10396 1 genus Ralstonia 0 105219 1 1460 0 Ralstonia mannitolilytica species 305 1 0 Ralstonia solanacearum species 4589 1 190721 species Ralstonia insidiosa 0 1762 Ralstonia pickettii species 0 2337 1 329 1 1827195 genus 0 1090 1090 0 species Burkholderia sp. RPE64 758793 1 Burkholderia genus 0 43838 1 41 32008 2150 0 species Burkholderia plantarii 1468 41899 1 6072 species group 0 7 111527 0 Burkholderia sp. MSMB617WGS species 471 1637831 1 549 Burkholderia sp. MSMB0266 species 0 1 1637837 563 0 Burkholderia mallei species 13373 1 1 1637841 546 species Burkholderia sp. MSMB0852 0 57975 1 0 species Burkholderia thailandensis 1405 1 28450 Burkholderia pseudomallei species 0 1683 855 0 species Burkholderia oklahomensis 342113 1 11 2613784 no rank 0 8344 species Burkholderia sp. 2002721687 0 688 1 1468409 416344 1 635 0 Burkholderia sp. KJ006 species 623 species Burkholderia sp. PAMC 28687 0 1 1795874 1 758796 species Burkholderia sp. RPE67 0 983 1678678 1 0 Burkholderia sp. HB1 species 841 Burkholderia sp. Bp5365 species 0 622 1 1740162 0 Burkholderia sp. PAMC 26561 species 762 1795043 1 765 0 Burkholderia sp. Bp7605 species 1740163 1 640510 1 803 0 species Burkholderia sp. CCGE1001 1 1097668 884 species Burkholderia sp. YI23 0 738 species Burkholderia sp. CCGE1003 0 1 640512 337 1 2330 0 Burkholderia glumae species 0 species Burkholderia gladioli 2033 28095 1 87882 19 0 species group 21441 0 species Burkholderia pseudomultivorans 832 1207504 1 Burkholderia stabilis species 0 1153 1 95485 292 1 0 Burkholderia cepacia species 3415 0 species Burkholderia pyrrocinia 522 60550 1 1187 species Burkholderia vietnamiensis 0 1 60552 0 Burkholderia ambifaria species 746 152480 1 87883 1 0 species Burkholderia multivorans 1636 488729 1 646 0 Burkholderia metallica species 2005 species Burkholderia ubonensis 0 1 101571 1 95486 3586 species Burkholderia cenocepacia 0 1 265293 species [Pseudomonas] mesoacidophila 0 624 488446 1 0 species Burkholderia latens 668 1 482957 1035 species Burkholderia lata 0 558 0 species Burkholderia dolosa 152500 1 632 0 Burkholderia seminalis species 488731 1 1 488732 409 species Burkholderia diffusa 0 488447 1 0 species Burkholderia contaminans 781 species Burkholderia territorii 0 497 1 1503055 1 1503054 species Burkholderia stagnalis 0 509 249 1822464 12 1 11474 0 Paraburkholderia genus 1088 Paraburkholderia sprentiae species 0 1 948107 1 36873 1032 Paraburkholderia xenovorans species 0 species Paraburkholderia phenoliruptrix 0 966 1 252970 1 75105 Paraburkholderia caribensis species 0 1218 890 0 no rank 2615204 1 1 1926494 species Paraburkholderia sp. SOS3 0 890 1155 0 Paraburkholderia fungorum species 134537 1 0 species Paraburkholderia aromaticivorans 1089 2026199 1 870 0 Paraburkholderia hospita species 169430 1 Paraburkholderia terrae species 0 923 1 311230 1 148447 species Paraburkholderia phymatum 0 1002 261302 1 992 0 Paraburkholderia phytofirmans species Pandoraea genus 0 8135 1 10 93217 179 93221 1 0 species Pandoraea pulmonicola 807 1 93218 1073 species Pandoraea apista 0 93219 1 0 Pandoraea norimbergensis species 809 93220 1 1015 0 species Pandoraea pnomenusa 1 656179 species Pandoraea faecigallinarum 0 814 species Pandoraea thiooxydans 0 852 1 445709 880 0 Pandoraea oxalativorans species 573737 1 871 0 species Pandoraea sputorum 93222 1 0 Pandoraea vervacti species 835 656178 1 106589 9 529 0 Cupriavidus genus 1 13968 68895 1 1438 0 species Cupriavidus basilensis 1261 0 Cupriavidus gilardii species 82541 1 1881 Cupriavidus sp. USMAA1020 species 0 1 367825 Cupriavidus metallidurans species 0 1423 1 119219 3742 no rank 0 2 2640874 1 1389192 1817 Cupriavidus sp. USMAHM13 species 0 1 876364 1925 Cupriavidus sp. USMAA2-4 species 0 0 species Cupriavidus necator 2703 106590 1 248026 1 991 0 Cupriavidus pinatubonensis species 1 60826 0 Comamonadaceae family 1150 80864 59 52972 3 152 0 Polaromonas genus 1 2574 1 216465 1364 Polaromonas naphthalenivorans species 0 2638319 1 1058 0 no rank 296591 1 1058 0 species Polaromonas sp. JS666 1 1436289 2 1 481 0 Candidatus Symbiobacter genus Candidatus Symbiobacter mobilis species 0 480 1 1436290 1 1464 0 genus Limnohabitans 2 665874 3 1462 no rank 0 2 2626134 species Limnohabitans sp. 103DPR2 0 714 1 1678129 748 Limnohabitans sp. 63ED37-2 species 0 1 1678128 Comamonas genus 0 5252 1 4 283 36 1 225992 1190 Comamonas kerstersii species 0 1 285 species Comamonas testosteroni 0 2685 1082851 1 0 species Comamonas serinivorans 1341 34072 5 140 0 genus Variovorax 1 9067 2 663243 2927 no rank 0 2162 0 species Variovorax sp. PMC12 2126319 1 species Variovorax sp. PAMC 28711 0 765 1 1795631 1 436515 species Variovorax boronicumulans 0 1778 1 34073 4222 species Variovorax paradoxus 0 1015 1 genus Verminephrobacter 0 6 2 364316 364317 1 1009 0 Verminephrobacter eiseniae species 0 Ramlibacter genus 1 2886 174951 2 48 94132 1 0 Ramlibacter tataouinensis species 2838 1 1759 0 Alicycliphilus genus 24 201096 2 1 179636 1735 Alicycliphilus denitrificans species 0 12916 9 469 0 genus Acidovorax 1 10608 5103 no rank 0 4 2684926 species Acidovorax sp. RAC01 0 1193 1 1842533 0 Acidovorax sp. JS42 species 1314 232721 1 Acidovorax sp. T1 species 0 1135 1 1858609 1 358220 1461 species Acidovorax sp. KKS102 0 80867 1 0 species Acidovorax avenae 1444 1 553814 922 species Acidovorax sp. NA3 0 Acidovorax citrulli species 0 1231 1 80869 0 species Acidovorax ebreus 1439 721785 1 2 2490452 1411 genus 0 721 0 species Comamonadaceae bacterium A1 1458425 1 0 Comamonadaceae bacterium B1 species 690 1458426 1 1 4015 0 Rhodoferax genus 34 28065 5 81479 1 0 Rhodoferax antarcticus species 743 1379 species Rhodoferax koreense 0 1 1842727 0 species Rhodoferax saidenbachensis 993 1484693 1 Rhodoferax ferrireducens species 0 866 1 192843 1153 1 genus Melaminivora 0 38 2 1649468 1 2641902 no rank 0 1115 1115 0 Melaminivora sp. SC2-9 species 2109913 1 2 238749 13 Diaphorobacter genus 0 1537 1 1546149 1 1524 0 species Diaphorobacter polyhydroxybutyrativorans 80865 5 465 0 genus Delftia 1 8311 2146 Delftia acidovorans species 0 1 80866 no rank 0 3915 2 2613839 1 1920191 1988 species Delftia sp. HK171 0 742013 1 1927 0 Delftia sp. Cs1-4 species 1785 0 Delftia tsuruhatensis species 180282 1 12 352450 2 1 1037 0 genus Simplicispira 0 species Simplicispira sp. SC1-8 1025 2109915 1 1 2678886 1401 genus 0 1 2116657 species Melaminivora sp. SC2-7 0 1401 3479 1 genus Hydrogenophaga 0 65 4 47420 2610897 2 2707 0 no rank 0 species Hydrogenophaga sp. RAC07 1068 1842537 1 species Hydrogenophaga sp. PBC 0 1639 1 795665 0 Hydrogenophaga crassostreae species 707 1763535 1 genus Ottowia 0 2226 1 3 219181 7 1 2645081 971 no rank 0 1 1658672 971 Ottowia sp. oral taxon 894 species 0 1248 0 species Ottowia sp. KADR8-3 2109914 1 2 80841 no rank 0 4504 721 0 species Burkholderiales bacterium GJ-E10 1469502 1 1834205 1 0 Burkholderiales bacterium YL45 species 3783 Alcaligenaceae family 0 45731 1 42 506 335 1 1666 0 genus Orrella 32 1921582 2 1634 species Orrella dioscoreae 0 1 1851544 1 1100891 genus 0 277 1 643674 species Paenalcaligenes hominis 0 277 1 719 0 Pusillimonas genus 7 305976 2 2640016 1 0 no rank 712 1007105 1 712 0 species Pusillimonas sp. T7-7 0 genus 227 1472344 1 0 Basilea psittacipulmonis species 227 1472345 1 5 3 290425 1258 1 genus Advenella 0 species Advenella mimigardefordensis 0 637 1 302406 1 310575 616 Advenella kashmirensis species 0 229 1 Oligella genus 0 1 2 90243 0 Oligella urethralis species 228 90245 1 1545 1 Alcaligenes genus 0 12 2 507 1533 0 Alcaligenes faecalis species 511 1 29574 3 1 0 genus Taylorella 1 325 0 species Taylorella equigenitalis 153 29575 1 1 84590 Taylorella asinigenitalis species 0 171 2 359336 71 genus Castellaniella 0 1748 1 75697 1 0 species Castellaniella defragrans 1677 6 222 559 Achromobacter genus 0 16320 1 1 217203 species Achromobacter spanius 0 2689 6425 species Achromobacter xylosoxidans 0 1 85698 0 no rank 1740 2626865 1 0 species Achromobacter sp. AONIH1 1740 1758194 1 3413 species Achromobacter denitrificans 0 1 32002 217204 1 1494 0 species Achromobacter insolitus 1 21082 0 Bordetella genus 749 517 17 35814 1 630 0 Bordetella holmesii species 1297 Bordetella genomosp. 13 species 0 1 463040 463025 1 0 Bordetella bronchialis species 1486 1 123899 Bordetella trematum species 0 1225 1 463014 species Bordetella flabilis 0 1298 463024 1 1459 0 species Bordetella genomosp. 6 Bordetella bronchiseptica species 0 2618 1 518 Bordetella avium species 0 673 1 521 1331258 1 1294 0 Bordetella pseudohinzii species 1008 species Bordetella pertussis 0 1 520 0 no rank 1259 2630031 1 1 1697043 Bordetella sp. H567 species 0 1259 0 Bordetella genomosp. 9 species 1148 1416803 1 1282 0 Bordetella parapertussis species 519 1 103855 1 0 species Bordetella hinzii 1372 1271 0 species Bordetella genomosp. 8 1416806 1 1013 0 species Bordetella petrii 94624 1 36 206351 334 order Neisseriales 0 27333 1 15209 1 Neisseriaceae family 0 123 22 481 2 538 8 genus Eikenella 0 951 1 0 Eikenella corrodens species 943 539 1 482 12 263 0 Neisseria genus 1 11359 1 1853278 Neisseria sp. 10023 species 0 1372 485 1 0 species Neisseria gonorrhoeae 724 782 0 Neisseria sicca species 490 1 486 1 974 0 Neisseria lactamica species 1 488 748 Neisseria mucosa species 0 2172 0 no rank 2623750 2 701 species Neisseria sp. 10022 0 1 1853276 655307 1 1471 0 species Neisseria sp. KEM232 1 495 505 Neisseria elongata species 0 1 28091 species Neisseria weaveri 0 534 2013 0 species Neisseria meningitidis 487 1 1 326523 1272 species Neisseria zoodegmatis 0 1 2 1193515 613 1 genus Snodgrassella 0 0 species Snodgrassella alvi 612 1196083 1 375 genus 0 1 71 1 72 375 Simonsiella muelleri species 0 1 421605 285 no rank 0 2052837 1 0 Neisseriaceae bacterium DSM 100970 species 285 73 59 3 1 1503 0 Vitreoscilla genus 63 1 1073 0 species Vitreoscilla filiformis 2627922 1 357 0 no rank 0 species Vitreoscilla sp. C1 357 96942 1 1499392 13 280 0 Chromobacteriaceae family 1 11790 2 885864 22 genus Jeongeupia 0 1104 1 1 2619593 no rank 0 1082 1 1906741 Jeongeupia sp. USM3 species 0 1082 24 568394 2 1 1645 0 Pseudogulbenkiania genus 2642558 1 1621 0 no rank 1621 Pseudogulbenkiania sp. NH8B species 0 1 748280 1375 1 Aquaspirillum genus 0 5 2 187 1370 no rank 0 1 2620219 1938604 1 0 species Aquaspirillum sp. LM1 1370 1 1471 0 genus Laribacter 26 168470 2 1445 0 Laribacter hongkongensis species 168471 1 90153 4 0 no rank 5915 genus Chromobacterium 0 5915 1 4 535 128 2641838 1 0 no rank 1592 2059672 1 0 Chromobacterium sp. ATCC 53434 species 1592 1108595 1 2444 0 Chromobacterium vaccinii species 1751 species Chromobacterium violaceum 0 1 536 no rank 0 1836 12 119066 genus Candidatus Profftella 0 83 1 2 1381133 1 669502 1 0 species Candidatus Profftella armatura 82 189384 1 0 genus 18 189385 1 0 Candidatus Tremblaya princeps species 18 35 2 327159 1039 1 Candidatus Accumulibacter genus 0 1 327160 1004 Candidatus Accumulibacter phosphatis species 0 genus 0 20 1 1301080 1 1160784 Candidatus Nasuia deltocephalinicola species 0 20 genus Kinetoplastibacterium 0 676 1 6 33055 24 33056 1 182 0 species Candidatus Kinetoplastibacterium crithidii 233181 1 94 0 species Kinetoplastibacterium blastocrithidii 1 994696 Candidatus Kinetoplastibacterium oncopeltii species 0 81 0 species Candidatus Kinetoplastibacterium desouzaii 165 994692 1 species Candidatus Kinetoplastibacterium galatii 0 130 1 994695 no rank 0 1245 2 33809 1904640 1 1077 0 species Betaproteobacteria bacterium GR16-43 543913 1 0 beta proteobacterium CB species 168 266 206389 22 1 17021 0 Rhodocyclales order 12 2008794 777 Zoogloeaceae family 0 11932 1 0 Azoarcus genus 1 4488 12960 5 183 1066 Azoarcus olearius species 0 1 418699 2629479 2 0 no rank 2238 198107 1 0 Azoarcus sp. CIB species 1066 1172 0 Azoarcus sp. KH32C species 748247 1 1 2067960 1001 species Azoarcus sp. SY39 0 1 6667 0 Thauera genus 226 33057 6 1312 species Thauera humireducens 0 1 1134435 2 2609274 no rank 0 3082 85643 1 0 species Thauera sp. MZ1T 1495 2005884 1 0 species Thauera sp. K11 1587 1019 Thauera aromatica species 0 1 59405 1 96773 Thauera chlorobenzoica species 0 1028 3720 1 Rhodocyclaceae family 0 55 6 75787 75788 1 0 no rank 813 1898103 1 813 0 Rhodocyclaceae bacterium species 63 2 146937 1987 1 Azospira genus 0 0 Azospira oryzae species 1924 146939 1 551759 2 17 0 genus Aromatoleum 1 865 848 0 species Aromatoleum aromaticum 551760 1 family Azonexaceae 0 1103 1 3 2008795 27 6 73029 2 1 1076 0 Dechloromonas genus 1 259537 1070 Dechloromonas aromatica species 0 0 class 1492 580370 5 7 580371 5 1 1492 0 Mariprofundales order 12 580372 4 1 1485 0 family Mariprofundaceae 377315 3 6 0 Mariprofundus genus 1 1473 0 species Mariprofundus ferrinatatus 741 1921087 1 1 1921086 726 Mariprofundus aestuarium species 0 1532 875 1236 615524 1 class Gammaproteobacteria 0 395 67 135619 30046 1 order Oceanospirillales 0 6 1920240 2 Kangiellaceae family 0 1149 1 261963 5 27 0 Kangiella genus 1 1147 species Kangiella profundi 0 316 1 1561924 261964 1 0 species Kangiella koreensis 331 1 1144748 311 Kangiella sediminilitoris species 0 Kangiella geojedonensis species 0 162 1 914150 family Halomonadaceae 0 17688 1 30 28256 437 924 1 genus Chromohalobacter 0 1 2 42054 1 158080 923 Chromohalobacter salexigens species 0 Cobetia genus 0 1104 1 2 204286 16 28258 1 1088 0 Cobetia marina species 164 no rank 0 3 114403 66 0 genus 1495768 1 Candidatus Evansia muelleri species 0 66 1 1495769 1 114185 genus 0 61 species Candidatus Carsonella ruddii 0 61 1 114186 genus 0 37 1 235572 1 91844 37 species Candidatus Portiera aleyrodidarum 0 1 958 0 Halotalea genus 18 376488 2 1 376489 Halotalea alkalilenta species 0 940 36 404432 2 1 1040 0 genus Salinicola 0 species Salinicola tamaricis 1004 1771309 1 11356 1 genus Halomonas 0 176 15 2745 0 Halomonas aestuarii species 1305 1897729 1 1 475662 species Halomonas beimenensis 0 1407 1 1178482 851 species Halomonas huangheensis 0 115561 1 0 species Halomonas hydrothermalis 1169 1 213554 species Halomonas campaniensis 0 249 8 2609666 no rank 0 5283 species Halomonas sp. 'Soap Lake #6' 0 666 1 1949203 1971364 1 0 Halomonas sp. GT species 262 Halomonas sp. R57-5 species 0 583 1 1610576 337 Halomonas sp. GFAJ-1 species 0 1 1118153 1259 Halomonas sp. 1513 species 0 1 1883416 0 Halomonas sp. KO116 species 647 1504981 1 0 Halomonas sp. 'Soap Lake #7' species 666 1962264 1 863 0 species Halomonas sp. SF2003 2136172 1 1 507626 916 Halomonas chromatireducens species 0 504090 3 13 0 genus Kushneria 1 1705 species Kushneria konosiri 0 893 1 698828 157779 1 799 0 Kushneria marisflavi species 0 family Alcanivoracaceae 1 4619 224372 9 40 2025617 2 3 0 Ketobacter genus 1 590 species Ketobacter alkanivorans 0 587 1 1917421 Alcanivorax genus 0 3989 1 6 59753 49 species Alcanivorax xenomutans 0 993 1 1094342 379 0 no rank 2638842 1 379 0 species Alcanivorax sp. NBRC 101098 1113728 1 1306787 1 939 0 Alcanivorax pacificus species 1226 Alcanivorax dieselolei species 0 1 285091 403 0 species Alcanivorax borkumensis 59754 1 1 563 0 Oleiphilaceae family 1 191033 3 genus Oleiphilus 0 562 1 2 141450 1 1 141451 Oleiphilus messinensis species 0 561 2 3 224379 1079 1 family Hahellaceae 0 Hahella genus 0 1077 1 2 158481 31 1046 0 species Hahella chejuensis 158327 1 3426 1 family Oceanospirillaceae 0 80 11 135620 1 1067 0 Marinomonas genus 3 28253 4 250 0 Marinomonas mediterranea species 119864 1 0 Marinomonas posidonica species 283 936476 1 196814 1 0 no rank 531 1 400668 Marinomonas sp. MWYL1 species 0 531 Marinobacterium genus 0 1101 1 2 48075 9 Marinobacterium aestuarii species 0 1092 1 1821621 0 Bacterioplanes genus 1 418 1537406 2 2 1 1249553 Bacterioplanes sanyensis species 0 416 188907 1 276 0 genus 1 188908 Oleispira antarctica species 0 276 484 0 genus 187492 1 1 187493 species Thalassolituus oleivorans 0 484 2 255527 4 1 1127 0 Saccharospirillaceae family 4 1445504 2 1 810 0 genus Gynuella 1445505 1 806 0 Gynuella sunshinyii species 0 genus 315 230494 1 1 1336806 species Reinekea forsetii 0 315 63 13 135618 6178 1 Methylococcales order 0 1 6115 0 family Methylococcaceae 50 403 12 2 2 39773 631 1 Methylomicrobium genus 0 1 271065 species Methylomicrobium alcaliphilum 0 629 413 2 32 0 Methylococcus genus 1 857 825 0 species Methylococcus capsulatus 414 1 39 5 416 4087 1 genus Methylomonas 0 1 421 species Methylomonas methanica 0 898 702114 1 1045 0 species Methylomonas koyamae 0 no rank 1271 2608980 1 1727196 1 1271 0 Methylomonas sp. DH-1 species 834 0 Methylomonas denitrificans species 1538553 1 Methylovulum genus 0 490 1 2 762296 1 Methylovulum psychrotolerans species 0 489 1 1704499 1 212314 0 order Enterobacterales 855 91347 241 54 1903410 20 1 18938 0 Pectobacteriaceae family 7269 1 genus Pectobacterium 0 181 6 122277 Pectobacterium atrosepticum species 0 607 1 29471 1905730 1 0 Pectobacterium parmentieri species 886 55208 1 627 0 species Pectobacterium wasabiae 3798 species Pectobacterium carotovorum 0 1 554 0 Pectobacterium polaris species 1170 2042057 1 353 6 204037 8012 1 genus Dickeya 0 1087 species Dickeya fangzhongdai 0 1 1778540 0 Dickeya dadantii species 1070 204038 1 1089444 1 0 Dickeya solani species 2268 1252 0 Dickeya dianthicola species 204039 1 204042 1 0 Dickeya zeae species 1982 1 937 0 genus Brenneria 7 71655 2 930 Brenneria goodwinii species 0 1 1109412 2666 1 genus Sodalis 0 59 5 84565 species Candidatus Sodalis pierantonius 0 743 1 1486991 1929246 1 88 0 species Sodalis endosymbiont of Henestaris halophilus 63612 1 0 species Sodalis glossinidius 758 1018 0 Sodalis praecaptivus species 1239307 1 1 39669 0 family Yersiniaceae 131 1903411 39 929812 2 2 0 Gibbsiella genus 1 1003 0 species Gibbsiella quercinecans 1001 929813 1 1 487 0 genus Chania 10 1745211 2 1639108 1 477 0 species Chania multitudinisentens 1298 16 613 26547 1 genus Serratia 0 1 61651 Serratia ficaria species 0 1406 0 no rank 9940 2647522 8 1418 Serratia sp. MYb239 species 0 1 2033438 671990 1 0 Serratia sp. FGI94 species 1857 0 Serratia sp. SSNIH1 species 1074 1758196 1 0 Serratia sp. ATCC 39006 species 825 104623 1 1043 0 species Serratia sp. AS13 768493 1 0 species Serratia sp. SCBI 1345 488142 1 species Serratia sp. FS14 0 1335 1 1327989 768490 1 1043 0 species Serratia sp. AS12 0 species Serratia liquefaciens 1038 614 1 1661 0 species Serratia rubidaea 61652 1 0 Serratia marcescens species 5428 615 1 1 47917 species Serratia fonticola 0 2232 1206 species Serratia proteamaculans 0 1 28151 82996 1 2338 0 Serratia plymuthica species 74 4 34037 2385 1 genus Rahnella 0 no rank 0 1609 2 2635087 1 1805933 Rouxiella sp. ERMR1:05 species 0 860 species Rahnella sp. Y9602 0 749 1 741091 34038 1 702 0 Rahnella aquatilis species Rouxiella genus 0 25 1 1565532 9091 1 genus Yersinia 0 163 13 629 337 no rank 0 1 2653513 1 1839800 337 species Yersinia sp. FDAARGOS_228 0 1 630 species Yersinia enterocolitica 0 2267 0 species Yersinia frederiksenii 1441 29484 1 631 1 0 species Yersinia intermedia 356 1 29485 species Yersinia rohdei 0 331 1 263819 340 species Yersinia aleksiciae 0 species group 0 2123 3 1649845 633 1 991 0 Yersinia pseudotuberculosis species 0 Yersinia similis species 474 367190 1 Yersinia pestis species 0 658 1 632 668 0 Yersinia aldovae species 29483 1 29486 1 489 0 species Yersinia ruckeri 0 Yersinia kristensenii species 576 28152 1 1090 0 no rank 451511 2 69 2 702 1090 1 Plesiomonas genus 0 1 703 species Plesiomonas shigelloides 0 1021 26 1903409 58 Erwiniaceae family 0 19904 1 2225 0 genus 2100764 2 1038 species Pantoea gaviniae 0 1 665914 1 665913 species Pantoea calida 0 1187 1 10216 0 Pantoea genus 397 53335 11 1968 species group 0 1 1654067 1 549 1968 Pantoea agglomerans species 0 1 1076550 550 Pantoea rwandensis species 0 553 1 0 species Pantoea ananatis 1140 118 0 Candidatus Pantoea carbekii species 1235990 1 1 470934 1534 Pantoea vagans species 0 66269 1 0 species Pantoea stewartii 729 3 2630326 3124 no rank 0 592316 1 0 Pantoea sp. At-9b species 1180 1484157 1 1111 0 Pantoea sp. PSNIH2 species Pantoea sp. PSNIH1 species 0 833 1 1484158 1891675 1 0 Pantoea alhagi species 656 1 51228 146 genus 0 51229 1 0 species Wigglesworthia glossinidia 146 247 8 551 5198 1 Erwinia genus 0 79967 1 0 species Erwinia pyrifoliae 612 0 Erwinia tasmaniensis species 852 338565 1 182337 1 0 Erwinia billingiae species 916 587 species Erwinia amylovora 0 1 552 1033 0 species Erwinia gerundensis 1619313 1 0 species Candidatus Erwinia sp. ErCipseudotaxifoliae 210 1922217 1 2622719 1 741 0 no rank 741 Erwinia sp. Ejp617 species 0 1 215689 Tatumella genus 0 414 1 2 82986 60 53336 1 354 0 Tatumella citrea species 1647 genus 0 1 32199 1647 0 species Buchnera aphidicola 9 1 2 1903416 501 family 0 0 genus Pragia 1 501 82984 2 3 0 Pragia fontium species 498 82985 1 543 116 1210 0 family Enterobacteriaceae 1 114150 4791 no rank 0 5 36866 Enterobacteriaceae bacterium ENNIH1 species 0 1049 1 2066051 1 1920128 1273 species Enterobacteriaceae bacterium ENNIH3 0 891974 1 0 Plautia stali symbiont species 826 657 0 Enterobacteriaceae bacterium strain FGI 57 species 693444 1 986 Enterobacteriaceae bacterium ENNIH2 species 0 1 1920109 0 Pluralibacter genus 1 3344 1330546 3 15 1 1334193 1207 [Enterobacter] lignolyticus species 0 1 61647 Pluralibacter gergoviae species 0 2122 Citrobacter genus 0 15436 1 14 544 453 0 species Citrobacter amalonaticus 2055 35703 1 1240 no rank 0 2 2644389 1 1920110 555 Citrobacter sp. CFNIH10 species 0 1702170 1 685 0 Citrobacter sp. FDAARGOS_156 species 0 species Citrobacter farmeri 829 67824 1 8675 species group 0 7 1344959 species Citrobacter freundii complex sp. CFNIH4 0 642 1 2077148 3053 0 Citrobacter freundii species 546 1 species Citrobacter braakii 0 1794 1 57706 2077149 1 0 Citrobacter freundii complex sp. CFNIH9 species 854 1 2066049 species Citrobacter freundii complex sp. CFNIH2 0 638 1 67827 Citrobacter werkmanii species 0 1008 species Citrobacter freundii complex sp. CFNIH3 0 686 1 2077147 Citrobacter rodentium species 0 1084 1 67825 545 1 0 species Citrobacter koseri 1100 969 1 Shimwellia genus 0 2 2 1335483 563 1 967 0 Shimwellia blattae species 0 Cronobacter genus 1 5760 413496 8 141 species Cronobacter universalis 0 667 1 535744 533 0 Cronobacter turicensis species 413502 1 1483 Cronobacter sakazakii species 0 1 28141 1 1163710 743 Cronobacter condimenti species 0 1 413497 species Cronobacter dublinensis 0 766 Cronobacter muytjensii species 0 819 1 413501 1 413503 608 Cronobacter malonaticus species 0 1 21864 0 Enterobacter genus 1332 547 22 9 2608935 5404 no rank 0 1914861 1 1157 0 Enterobacter sp. SA187 species 1692238 1 0 Enterobacter sp. FY-07 species 584 1 2051905 species Enterobacter sp. CRENT-193 0 884 species Enterobacter sp. Crenshaw 0 336 1 1977566 1868135 1 313 0 species Enterobacter sp. HK169 1 1827481 Enterobacter sp. ODB01 species 0 377 1166130 1 721 0 species Enterobacter sp. R4-368 1 1560339 species Enterobacter sp. E20 0 354 species Enterobacter sp. 638 0 678 1 399742 12 354276 species group 0 15128 158836 3 2393 0 species Enterobacter hormaechei 1 4054 1 1296536 subspecies Enterobacter xiangfangensis 0 786 1812934 1 875 0 Enterobacter cloacae complex 'Hoffmann cluster III' subspecies 1 61645 Enterobacter asburiae species 0 1737 69218 1 0 species Enterobacter cancerogenus 775 1137 no rank 0 3 2757714 2077137 1 479 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 species 1915310 1 0 species Enterobacter cloacae complex sp. ECNIH7 299 1 2027919 Enterobacter cloacae complex bacterium species 0 359 1812935 1 0 species Enterobacter cloacae complex 'Hoffmann cluster IV' 643 208224 1 431 0 Enterobacter kobei species 299767 1 500 0 Enterobacter ludwigii species 550 1 0 species Enterobacter cloacae 5851 23 2 158483 2769 1 Cedecea genus 0 158822 1 2746 0 Cedecea neteri species 1 3418 0 genus Raoultella 58 160674 3 1 54291 species Raoultella ornithinolytica 0 2463 species Raoultella planticola 0 897 1 575 genus 0 90 1 1048757 1 1048758 90 species Candidatus Moranella endobia 0 Salmonella genus 0 4988 1 3 590 7 1 28901 Salmonella enterica species 0 4184 54736 1 797 0 Salmonella bongori species 0 Escherichia genus 1 13717 561 5 67 562 1 10772 0 Escherichia coli species 1 564 589 Escherichia fergusonii species 0 1499973 1 744 0 Escherichia marmotae species 1 208962 1545 Escherichia albertii species 0 1909 no rank 0 16 191675 16 84563 1909 clade 0 1 1682492 genus 0 83 Candidatus Tachikawaea gelatinosa species 0 83 1 1410383 0 genus 169 1906657 1 169 0 species Candidatus Doolittlea endobia 1778262 1 160 genus 0 1 1906660 160 0 Candidatus Mikella endobia species 1778264 1 genus 0 110 1 1906659 1 1778263 species Candidatus Hoaglandella endobia 0 110 0 clade 164 199891 1 0 secondary endosymbiont of Trabutina mannipara species 164 1835721 1 3 146507 clade 0 494 134287 1 61 0 species secondary endosymbiont of Heteropsylla cubana 236 genus 0 1 568987 236 0 Candidatus Hamiltonella defensa species 138072 1 1 1199245 197 secondary endosymbiont of Ctenarytaina eucalypti species 0 84564 7 626 0 clade 0 genus Candidatus Blochmannia 1 626 203804 7 30 76 0 species Candidatus Blochmannia chromaiodes 251542 1 0 Candidatus Blochmannia vafer species 125 251535 1 83 0 species Candidatus Blochmannia pennsylvanicus 101534 1 0 species Candidatus Blochmannia floridanus 96 203907 1 711328 2 216 0 no rank species Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0 85 1 1505596 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 131 1 1505597 1 1906661 genus 0 103 1070130 1 103 0 Candidatus Gullanella endobia species 620 4 72 0 genus Shigella 1 2263 856 0 species Shigella dysenteriae 622 1 2629414 1 721 0 no rank 1 1813821 species Shigella sp. PAMC 28760 0 721 Shigella flexneri species 0 614 1 623 401618 1 0 genus 111 Candidatus Riesia pediculicola species 0 111 1 401619 42 4 1330545 3004 1 Lelliottia genus 0 species Lelliottia amnigena 0 1408 1 61646 69220 1 0 Lelliottia nimipressuralis species 844 1 1907578 Lelliottia jeotgali species 0 710 1330547 5 35 0 Kosakonia genus 1 3632 283686 1 0 Kosakonia radicincitans species 1056 1 497725 Kosakonia oryzae species 0 768 208223 1 0 species Kosakonia cowanii 1069 704 species Kosakonia sacchari 0 1 1158459 genus Klebsiella 0 20801 1 10 570 715 244366 1 2197 0 Klebsiella variicola species 2 2608929 no rank 0 2106 1 1934254 Klebsiella sp. M5al species 0 1197 1 1905288 909 Klebsiella sp. LTGPAF-6F species 0 0 Klebsiella oxytoca species 4395 571 1 1953 Klebsiella michiganensis species 0 1 1134687 Klebsiella quasipneumoniae species 0 1260 1 1463165 Klebsiella aerogenes species 0 1556 1 548 5549 Klebsiella pneumoniae species 0 1 573 Klebsiella quasivariicola species 0 1070 1 2026240 579 1 0 genus 918 0 Kluyvera intermedia species 918 61648 1 83654 4 140 0 Leclercia genus 1 3042 2078 no rank 0 2 2627398 992 0 species Leclercia sp. LSNIH3 1920116 1 1086 0 Leclercia sp. LSNIH1 species 1920114 1 824 species Leclercia adecarboxylata 0 1 83655 1 114 0 genus Candidatus Ishikawaella 3 409304 2 0 Candidatus Ishikawaella capsulata species 111 168169 1 1 8649 0 family Hafniaceae 21 1903412 14 6657 1 genus Edwardsiella 0 515 8 635 93378 1 793 0 species Edwardsiella hoshinae 1821960 1 0 species Edwardsiella anguillarum 685 1 636 species Edwardsiella tarda 0 1472 1607 0 no rank 2676541 2 682 Edwardsiella sp. LADL05-105 species 0 1 1650654 1 1578828 Edwardsiella sp. EA181011 species 0 925 789 0 species Edwardsiella piscicida 1263550 1 1 67780 Edwardsiella ictaluri species 0 796 1 342 0 Obesumbacterium genus 13 82982 2 1 82983 species Obesumbacterium proteus 0 329 568 3 28 0 Hafnia genus 1 1629 354 no rank 0 1 2621980 1 1848580 Hafnia sp. CBA7124 species 0 354 1247 Hafnia alvei species 0 1 569 Morganellaceae family 0 8558 1 21 1903414 43 0 Providencia genus 1 1662 586 4 14 Providencia rettgeri species 0 331 1 587 588 1 691 0 Providencia stuartii species 1 126385 626 Providencia alcalifaciens species 0 5 583 3 1 1268 0 genus Proteus 585 1 0 Proteus vulgaris species 474 584 1 0 Proteus mirabilis species 789 0 genus 93 637 1 1 634113 Arsenophonus symbiont of Lipoptena fortisetosa species 0 93 626 6 79 0 genus Xenorhabdus 1 2917 0 Xenorhabdus doucetiae species 574 351671 1 642 0 Xenorhabdus nematophila species 628 1 1 40577 460 species Xenorhabdus poinarii 0 866 Xenorhabdus bovienii species 0 1 40576 351679 1 296 0 species Xenorhabdus hominickii 1 1246 0 Photorhabdus genus 6 29487 4 1 574560 Photorhabdus temperata species 0 361 1 29488 401 Photorhabdus luminescens species 0 1 291112 Photorhabdus asymbiotica species 0 478 25 2 581 1329 1 genus Morganella 0 1 582 1304 Morganella morganii species 0 128 72274 615 Pseudomonadales order 0 146583 1 42 468 38 family Moraxellaceae 0 15311 1 25 469 123 genus Acinetobacter 0 10997 1 491 0 species Acinetobacter schindleri 108981 1 1 29430 Acinetobacter haemolyticus species 0 424 325 Acinetobacter soli species 0 1 487316 1 40214 species Acinetobacter johnsonii 0 205 species Acinetobacter larvae 0 307 1 1789224 1 756892 445 species Acinetobacter indicus 0 5 909768 4345 species group 0 0 Acinetobacter lactucae species 246 1785128 1 470 1 1716 0 Acinetobacter baumannii species 524 0 Acinetobacter calcoaceticus species 471 1 106654 1 483 0 species Acinetobacter nosocomialis 1 48296 species Acinetobacter pittii 0 1376 1148157 1 0 species Acinetobacter oleivorans 333 0 species Acinetobacter junii 497 40215 1 196816 7 0 no rank 2229 1 1758189 191 Acinetobacter sp. ACNIH2 species 0 1808001 1 478 0 species Acinetobacter sp. LoGeW2-3 1636603 1 0 Acinetobacter sp. ACNIH1 species 288 446 0 species Acinetobacter sp. TTH0-4 1646498 1 271 Acinetobacter sp. TGL-Y2 species 0 1 1407071 2079596 1 192 0 species Acinetobacter sp. SWBY1 0 species Acinetobacter sp. NCu2D-2 363 1608473 1 1 1324350 Acinetobacter equi species 0 354 0 Acinetobacter bereziniae species 295 106648 1 1 40216 species Acinetobacter radioresistens 0 303 1 202950 321 species 0 0 Acinetobacter sp. ADP1 strain 321 62977 1 1782 1 Moraxella genus 0 7 5 475 631 species Moraxella bovoculi 0 1 386891 species Moraxella osloensis 0 428 1 34062 Moraxella ovis species 0 415 1 29433 301 0 species Moraxella catarrhalis 480 1 0 genus Psychrobacter 1 2494 497 11 24 0 species Psychrobacter alimentarius 194 261164 1 1 334543 Psychrobacter arcticus species 0 358 1 45610 134 Psychrobacter urativorans species 0 196806 6 1525 0 no rank species Psychrobacter sp. P2G3 0 176 1 1699622 1 571800 Psychrobacter sp. G species 0 335 295 species Psychrobacter sp. AntiMn-1 0 1 1720344 128 0 species Psychrobacter sp. PRwf-1 349106 1 223 0 species Psychrobacter sp. P11G5 1699624 1 368 0 species Psychrobacter sp. DAB_AL43B 1028416 1 259 species Psychrobacter cryohalolentis 0 1 330922 937 85 135621 130657 1 family Pseudomonadaceae 0 Pseudomonas genus 0 125039 1 80 286 4803 11784 0 species group 136849 8 1153 0 species Pseudomonas viridiflava 33069 1 1 46257 Pseudomonas avellanae species 0 688 721 0 no rank 2775504 1 721 Pseudomonas sp. Lz4W species 0 1 1206777 2165 0 species subgroup 251698 2 47877 1 1061 0 Pseudomonas amygdali species 1104 0 species Pseudomonas savastanoi 29438 1 1 36746 species Pseudomonas cichorii 0 537 1479 0 Pseudomonas syringae group genomosp. 3 species 251701 1 1 251695 5041 species subgroup 0 317 1 0 species Pseudomonas syringae 5041 0 Pseudomonas knackmussii species 1224 65741 1 930166 1 1730 0 Pseudomonas brassicacearum species 6285 species group 0 2 136842 587753 1 4999 0 species Pseudomonas chlororaphis 296 1 1286 0 Pseudomonas fragi species 136841 6 16425 0 species group 53408 1 0 Pseudomonas citronellolis species 2603 1288 0 species Pseudomonas alcaligenes 43263 1 0 Pseudomonas resinovorans species 1353 53412 1 287 1 0 Pseudomonas aeruginosa species 5182 Pseudomonas mendocina species 0 4463 1 300 species subgroup 0 1536 1 1232139 1 1149133 species Pseudomonas furukawaii 0 1536 1142 species Pseudomonas alcaliphila 0 1 101564 0 Pseudomonas entomophila species 957 312306 1 1 1853130 Pseudomonas silesiensis species 0 752 0 no rank 26029 196821 30 species Pseudomonas sp. CC6-YY-74 0 568 1 1930532 1 2083052 species Pseudomonas sp. SWI36 0 951 1 1259844 species Pseudomonas sp. FGI182 0 946 2083051 1 644 0 species Pseudomonas sp. SWI6 0 Pseudomonas sp. JY-Q species 970 1338689 1 1 1649877 Pseudomonas sp. CCOS 191 species 0 987 1 1534110 654 Pseudomonas sp. DR 5-09 species 0 0 Pseudomonas sp. XWY-1 species 882 2069256 1 2067572 1 0 species Pseudomonas sp. NC02 819 1636610 1 0 Pseudomonas sp. PONIH3 species 910 1188 0 species Pseudomonas sp. St29 1500687 1 1 2083055 species Pseudomonas sp. LH1G9 0 748 675 0 species Pseudomonas sp. GR 6-02 1659194 1 0 Pseudomonas sp. LPH1 species 1056 1898684 1 723 0 species Pseudomonas sp. LG1D9 2083054 1 1 1415630 Pseudomonas sp. TKP species 0 734 2083053 1 0 species Pseudomonas sp. SWI44 703 1500686 1 1133 0 species Pseudomonas sp. Os17 1 1207075 species Pseudomonas sp. UW4 0 738 1856685 1 0 Pseudomonas sp. TCU-HL1 species 1264 0 Pseudomonas sp. MRSN12121 species 1028 1611770 1 Pseudomonas sp. S-6-2 species 0 875 1 1931241 575 0 Pseudomonas sp. MYb193 species 1827300 1 2049589 1 561 0 Pseudomonas sp. HLS-6 species 1637 0 Pseudomonas sp. ATCC 13867 species 1294143 1 961 0 Pseudomonas sp. StFLB209 species 1028989 1 0 Pseudomonas sp. VLB120 species 727 69328 1 1981174 1 319 0 Pseudomonas sp. M30-35 species 2018067 1 0 species Pseudomonas sp. FDAARGOS_380 761 1292 0 Pseudomonas sp. URMO17WK12:I11 species 1283291 1 0 Pseudomonas antarctica species 758 219572 1 157782 1 0 Pseudomonas parafulva species 1207 2 136846 7428 species group 0 578833 1 0 species subgroup 6531 316 1 6531 0 Pseudomonas stutzeri species Pseudomonas balearica species 0 897 1 74829 9 136843 species group 0 16278 1 200450 species Pseudomonas trivialis 0 870 1 76761 Pseudomonas veronii species 0 892 294 1 0 Pseudomonas fluorescens species 8845 1 47879 species Pseudomonas corrugata 0 822 487 Pseudomonas poae species 0 1 200451 species Pseudomonas protegens 0 1485 1 380021 75612 1 0 Pseudomonas mandelii species 773 0 species Pseudomonas azotoformans 1555 47878 1 0 species Pseudomonas orientalis 549 76758 1 1 1583341 1099 Pseudomonas cerasi species 0 1 244566 463 species Pseudomonas lurida 0 1 1788301 634 species Pseudomonas versuta 0 Pseudomonas psychrotolerans species 0 1340 1 237610 216142 1 0 species Pseudomonas rhizosphaerae 798 0 Pseudomonas cremoricolorata species 667 157783 1 species group 0 19164 6 136845 0 Pseudomonas mosselii species 1907 78327 1 47885 1 0 species Pseudomonas oryzihabitans 1103 1 70775 species Pseudomonas plecoglossicida 0 1029 76759 1 2613 0 Pseudomonas monteilii species 47880 1 1441 0 Pseudomonas fulva species 0 Pseudomonas putida species 11071 303 1 1 237609 Pseudomonas alkylphenolica species 0 662 104087 1 0 Pseudomonas frederiksbergensis species 2004 1 198620 1406 Pseudomonas koreensis species 0 3 351 4427 subfamily 0 0 Azotobacter genus 1 4427 352 3 96 353 1 2691 0 species Azotobacter chroococcum 354 1 0 species Azotobacter vinelandii 1640 0 genus 254 1849530 1 254 species Oblitimonas alkaliphila 0 1 1697053 1 1213 0 Immundisolibacterales order 14 1934945 4 Immundisolibacteraceae family 0 1199 1 3 1934946 28 10 2 1934947 1171 1 Immundisolibacter genus 0 1161 species Immundisolibacter cernigliae 0 1 1810504 order Legionellales 0 5653 1 20 118969 52 0 family Coxiellaceae 1 966 118968 5 7 1 134284 no rank 0 103 103 0 Coxiella-like endosymbiont species 1592897 1 2 776 3 1 856 0 Coxiella genus 743 species Coxiella burnetii 0 1 777 111 no rank 0 1 2676648 111 species Coxiella endosymbiont of Amblyomma americanum 0 1 325775 family Legionellaceae 0 4635 1 14 444 19 1 4437 0 genus Legionella 11 445 12 species Legionella longbeachae 0 241 1 450 1 452 Legionella spiritensis species 0 366 1 1867846 314 species Legionella clemsonensis 0 96230 1 0 species Legionella fallonii 292 0 Legionella pneumophila species 1738 446 1 343 species Legionella hackeliae 0 1 449 0 Legionella endosymbiont of Polyplax serrata species 52 2005262 1 262 Legionella waltersii species 0 1 66969 29423 1 0 species Legionella oakridgensis 211 Legionella sainthelensi species 0 401 1 28087 1 45067 206 species Legionella lansingensis 0 179 genus 0 1 465 1 451 species Tatlockia micdadei 0 179 1 9430 0 order Cellvibrionales 39 1706369 29 family Halieaceae 0 1616 1 4 1706372 17 32 3 1217416 1599 1 genus Halioglobus 0 859 0 species Halioglobus japonicus 930805 1 1 930806 708 Halioglobus pacificus species 0 family Cellvibrionaceae 0 4654 1 12 1706371 9 1 316625 genus 0 311 311 Saccharophagus degradans species 0 1 86304 5 2425 2 1 579 0 Teredinibacter genus species Teredinibacter turnerae 0 574 1 2426 genus Simiduia 0 944 1 2 447467 82 447471 1 0 Simiduia agarivorans species 862 genus Agarilytica 0 456 1 2 2036021 1 Agarilytica rhodophyticola species 0 455 1 1737490 10 4 19 0 Cellvibrio genus 1 2355 1 155077 1040 species Cellvibrio japonicus 0 no rank 0 1296 2 2624793 382 0 species Cellvibrio sp. PSBB023 1945512 1 914 Cellvibrio sp. PSBB006 species 0 1 1987723 0 family Spongiibacteraceae 1 923 1706375 7 2 220 1 genus Spongiibacter 0 6 2 630749 0 no rank 214 2631504 1 1620392 1 214 0 species Spongiibacter sp. IMCC21906 2 2 1084558 297 1 genus Oceanicoccus 0 1 716816 295 Oceanicoccus sagamiensis species 0 0 genus Zhongshania 1 404 1434050 2 1 Zhongshania aliphaticivorans species 0 403 1 1470434 2198 1 family Microbulbiferaceae 0 9 5 1706373 48073 4 15 0 genus Microbulbifer 1 2189 252514 1 0 Microbulbifer thermotolerans species 611 1 1769779 821 species Microbulbifer aggregans 0 260552 1 0 species Microbulbifer agarilyticus 742 order Alteromonadales 0 36462 1 104 135622 159 25 267888 12 family Pseudoalteromonadaceae 0 7464 1 24 53246 182 Pseudoalteromonas genus 0 7452 1 species Pseudoalteromonas espejiana 0 172 1 28107 263 species Pseudoalteromonas phenolica 0 1 161398 1 267375 250 species Pseudoalteromonas marina 0 166935 1 206 0 Pseudoalteromonas translucida species 237 Pseudoalteromonas issachenkonii species 0 1 152297 1348114 1 372 0 species Pseudoalteromonas piratica 1 43657 Pseudoalteromonas luteoviolacea species 0 283 5 194690 1496 no rank 0 1 1761891 257 species Pseudoalteromonas sp. 13-15 0 1 283699 288 Pseudoalteromonas sp. Bsw20308 species 0 1 1720343 330 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 0 234831 1 0 species Pseudoalteromonas sp. SM9913 239 382 Pseudoalteromonas sp. NC201 species 0 1 1514074 0 species Pseudoalteromonas piscicida 386 43662 1 400 0 species Pseudoalteromonas atlantica 288 1 314281 1 0 species Pseudoalteromonas tunicata 415 28109 1 0 species Pseudoalteromonas nigrifaciens 198 147 species Pseudoalteromonas haloplanktis 0 1 228 Pseudoalteromonas agarivorans species 0 203 1 176102 0 Pseudoalteromonas arctica species 164 394751 1 672 species Pseudoalteromonas spongiae 0 1 298657 43658 1 622 0 Pseudoalteromonas rubra species Pseudoalteromonas tetraodonis species 0 308 1 43659 1 247523 species Pseudoalteromonas aliena 0 476 267892 3 5 0 Ferrimonadaceae family 1 1368 0 Ferrimonas genus 1 1363 44011 2 22 44012 1 1341 0 species Ferrimonas balearica 1 9893 0 Shewanellaceae family 102 267890 25 132 24 22 9791 1 Shewanella genus 0 271098 1 0 Shewanella halifaxensis species 419 0 species Shewanella putrefaciens 383 24 1 447 Shewanella woodyi species 0 1 60961 Shewanella violacea species 0 338 1 60217 1 70864 species Shewanella pealeana 0 362 543 Shewanella marisflavi species 0 1 260364 6 196818 1654 no rank 0 0 Shewanella sp. MR-4 species 224 60480 1 0 Shewanella sp. ANA-3 species 444 94122 1 324 species Shewanella sp. W3-18-1 0 1 351745 2029986 1 0 Shewanella sp. WE21 species 215 60481 1 0 species Shewanella sp. MR-7 211 1 2059264 species Shewanella sp. Pdp11 0 236 271097 1 466 0 species Shewanella sediminis Shewanella frigidimarina species 0 700 1 56812 0 Shewanella denitrificans species 201 192073 1 277 0 species Shewanella piezotolerans 404011 1 696 0 Shewanella loihica species 359303 1 93973 1 357 0 Shewanella japonica species 1 60478 Shewanella amazonensis species 0 749 2018305 1 354 0 species Shewanella bicestrii 1 225848 Shewanella psychrophila species 0 416 815 0 Shewanella baltica species 62322 1 482 Shewanella oneidensis species 0 1 70863 0 family 785 267894 3 1 785 0 genus Psychromonas 1 67572 3 1 357794 Psychromonas ingrahamii species 0 545 2614957 1 239 0 no rank 1 314282 239 Psychromonas sp. CNPT3 species 0 3 267891 4 family Moritellaceae 0 647 1 2 58050 6 genus Moritella 0 643 1 80854 1 637 0 Moritella viscosa species 267893 6 4 0 Idiomarinaceae family 1 1248 1 1244 0 genus Idiomarina 9 135575 5 449 0 Idiomarina loihiensis species 135577 1 289 0 Idiomarina piscisalsi species 1096243 1 2614829 2 497 0 no rank 2100422 1 0 species Idiomarina sp. OT37-5b 300 0 species Idiomarina sp. X4 197 2055892 1 Colwelliaceae family 0 2413 1 9 267889 12 328 1 Thalassotalea genus 0 6 2 1518149 1 1763536 322 species Thalassotalea crassostreae 0 5 28228 6 1 2073 0 Colwellia genus 331 species Colwellia psychrerythraea 0 1 28229 3 196834 1230 no rank 0 482 0 Colwellia sp. PAMC 20917 species 1816218 1 1 1816219 species Colwellia sp. PAMC 21821 0 253 495 species Colwellia sp. MT41 0 1 58049 Colwellia beringensis species 0 507 1 1967665 76 72275 29 1 12485 0 Alteromonadaceae family 396 0 genus 89404 2 1 2618684 no rank 0 184 983545 1 0 Glaciecola sp. 4H-3-7+YE-5 species 184 212 0 species Glaciecola nitratireducens 300231 1 2 1621534 2 1 220 0 Paraglaciecola genus 218 0 Paraglaciecola psychrophila species 326544 1 0 Agarivorans genus 1 352 261825 2 8 680279 1 0 Agarivorans gilvus species 344 2742 10 67 0 genus Marinobacter 1 7006 0 species Marinobacter similis 542 1420916 1 1 330734 342 species Marinobacter psychrophilus 0 1203 0 Marinobacter salarius species 1420917 1 1874317 1 397 0 species Marinobacter salinus 0 Marinobacter adhaerens species 654 1033846 1 2743 1 1426 0 Marinobacter hydrocarbonoclasticus species 0 no rank 2375 83889 3 1749259 1 0 species Marinobacter sp. LQ44 1388 1 1671721 615 species Marinobacter sp. CP1 0 490759 1 0 Marinobacter sp. BSs20148 species 372 1751872 2 59 0 Lacimicrobium genus 1 1031 1 1526571 Lacimicrobium alkaliphilum species 0 972 27 226 10 1 3404 0 Alteromonas genus 242 0 Alteromonas stellipolaris species 233316 1 231 0 species Alteromonas naphthalenivorans 715451 1 1 589873 275 Alteromonas australica species 0 0 species Alteromonas mediterranea 717 314275 1 no rank 0 654 3 2614992 201 0 species Alteromonas sp. MB-3u-76 2058133 1 1777491 1 218 0 species Alteromonas sp. Mac1 235 species Alteromonas sp. RW2A1 0 1 1917158 1 28108 species Alteromonas macleodii 0 1035 287094 1 0 Alteromonas addita species 223 order Aeromonadales 0 33502 1 29 135624 256 1 33246 0 Aeromonadaceae family 352 84642 28 1 27867 0 Aeromonas genus 1823 642 18 654 1 0 species Aeromonas veronii 2661 0 species Aeromonas dhakensis 1249 196024 1 948519 1 1314 0 Aeromonas rivipollensis species 8 257493 8288 no rank 0 1636608 1 0 species Aeromonas sp. ASNIH3 918 1157 0 species Aeromonas sp. CU5 2033033 1 1 1636609 species Aeromonas sp. ASNIH4 0 1214 1 1636607 Aeromonas sp. ASNIH2 species 0 785 0 species Aeromonas sp. ASNIH1 760 1636606 1 1758179 1 1179 0 Aeromonas sp. ASNIH5 species 1 1920107 1042 species Aeromonas sp. ASNIH7 0 2033032 1 1233 0 Aeromonas sp. CA23 species 1389 0 Aeromonas aquatica species 558964 1 1855 Aeromonas salmonicida species 0 1 645 1 648 837 Aeromonas caviae species 0 species Aeromonas media 0 966 1 651 1 644 Aeromonas hydrophila species 0 6246 652 1 1239 0 Aeromonas schubertii species 0 Tolumonas genus 1 814 43947 2 10 43948 1 0 species Tolumonas auensis 804 129577 2 12 0 Oceanimonas genus 1 1697 1 2636315 no rank 0 1685 1 511062 1685 Oceanimonas sp. GK1 species 0 347533 2 15 0 Zobellella genus 1 1944 1 347534 1929 species Zobellella denitrificans 0 3 225143 1 Oceanisphaera genus 0 572 1 1903694 1 0 species Oceanisphaera sp. AMac2203 319 1 1416627 252 species Oceanisphaera profunda 0 4 72273 33 1 7711 0 order Thiotrichales 4274 1 family Francisellaceae 0 12 14 34064 12 262 26 Francisella genus 0 4051 1 0 species Francisella hispaniensis 228 622488 1 493 no rank 0 2 2610885 1 475375 200 species Francisella sp. MA067296 0 1 1547445 species Francisella sp. FSC1006 0 293 494 species Francisella noatunensis 0 1 657445 1 573570 306 species Francisella sp. TX077310 0 1 549298 species Francisella halioticida 0 270 0 species Francisella philomiragia 687 28110 1 1 573569 species Francisella sp. TX077308 0 280 species Francisella tularensis 0 935 1 263 1 1542390 199 Francisella sp. CA97-1460 species 0 1 954 species Francisella persica 0 133 1869285 1 211 0 genus 1 594679 211 species Allofrancisella guangzhouensis 0 2907 1 family Piscirickettsiaceae 0 74 14 135616 663 1 Methylophaga genus 0 6 3 40222 754476 1 0 Methylophaga nitratireducenticrescens species 380 1 754477 277 species Methylophaga frappieri 0 genus Cycloclasticus 0 1121 1 4 34067 2 species Cycloclasticus zancles 0 374 1 1329899 2621467 2 0 no rank 745 429 0 Cycloclasticus sp. PY97N species 728003 1 385025 1 0 Cycloclasticus sp. P1 species 316 2 2 28884 326 1 Hydrogenovibrio genus 0 39765 1 0 Hydrogenovibrio crunogenus species 324 3 933 2 genus Thiomicrospira 0 344 1 92245 1 205 0 Thiomicrospira aerophila species Thiomicrospira cyclica species 0 137 1 147268 379 0 genus 1237 1 379 species Piscirickettsia salmonis 0 1 1238 0 Thiotrichaceae family 1 526 135617 4 3 40751 1 224 0 genus 40754 1 224 0 Thioploca ingrica species 1 2 1021 299 1 genus Beggiatoa 0 1 288004 species Beggiatoa leptomitoformis 0 298 0 order Nevskiales 1 690 1775403 4 37 0 Sinobacteraceae family 5 568386 1 2 2689614 family 0 648 648 1 genus Steroidobacter 0 1 2 469322 465721 1 647 0 Steroidobacter denitrificans species order 0 1061 3 1240482 1 1061 0 family Orbaceae 40 1240483 3 1 1335631 genus 0 560 species Frischella perrara 0 560 1 1267021 1193503 1 461 0 genus 1196095 1 0 Gilliamella apicola species 461 order Xanthomonadales 0 54078 1 53 135614 525 Rhodanobacteraceae family 0 8793 1 14 1775411 395 34 70411 2 1 927 0 Frateuria genus Frateuria aurantia species 0 893 1 81475 501 genus 0 1 2233801 2021234 1 501 0 species Xanthomonadales bacterium D13 Dokdonella genus 0 1240 1 2 323413 36 1 323415 Dokdonella koreensis species 0 1204 genus Dyella 0 3747 1 4 231454 49 1 1379159 species Dyella jiangningensis 0 1055 445710 1 1178 0 species Dyella thiooxydans 1465 species Dyella japonica 0 1 231455 Luteibacter genus 0 801 1 2 242605 7 242606 1 0 Luteibacter rhizovicinus species 794 0 Rhodanobacter genus 1 1182 75309 2 17 666685 1 1165 0 species Rhodanobacter denitrificans 613 32033 38 1 44760 0 Xanthomonadaceae family genus 0 496 1 2370 2371 1 496 0 Xylella fastidiosa species 96 68 5 1 5411 0 Lysobacter genus 435897 1 0 Lysobacter capsici species 1510 1 84531 1170 species Lysobacter antibioticus 0 69 1 0 Lysobacter enzymogenes species 1494 262324 1 0 Lysobacter gummosus species 1141 1 16070 0 genus Stenotrophomonas 415 40323 9 995085 1 6949 0 species group 40324 1 6949 0 Stenotrophomonas maltophilia species species Stenotrophomonas acidaminiphila 0 2090 1 128780 216778 1 0 Stenotrophomonas rhizophila species 1120 Stenotrophomonas nitritireducens species 0 1163 1 83617 4333 0 no rank 196198 4 1 1793721 1285 Stenotrophomonas sp. KCTC 12332 species 0 983 0 Stenotrophomonas sp. LM091 species 1904944 1 1 2005046 1076 Stenotrophomonas sp. WZN-1 species 0 0 species Stenotrophomonas sp. MYb57 989 1827305 1 5 83614 2 1 837 0 Luteimonas genus 832 0 species Luteimonas sp. 100111 2006110 1 0 genus Xanthomonas 1 18065 338 17 967 1 366650 526 Xanthomonas alfalfae species 0 48664 1 0 Xanthomonas fragariae species 524 643453 2 3167 0 species group 2364 species Xanthomonas citri 0 1 346 803 species Xanthomonas fuscans 0 1 366648 1779 Xanthomonas translucens species 0 1 343 56454 1 0 species Xanthomonas hortorum 622 Xanthomonas campestris species 0 2373 1 339 0 species Xanthomonas vasicola 680 56459 1 species Xanthomonas euvesicatoria 0 779 1 456327 1 347 Xanthomonas oryzae species 0 1571 1 29447 species Xanthomonas albilineans 0 579 1 1985254 737 Xanthomonas phaseoli species 0 678 Xanthomonas axonopodis species 0 1 53413 0 species Xanthomonas vesicatoria 747 56460 1 Xanthomonas sacchari species 0 1193 1 56458 1 442694 1143 species Xanthomonas perforans 0 56 3 83618 3268 1 genus Pseudoxanthomonas 0 2351 0 Pseudoxanthomonas suwonensis species 314722 1 415229 1 861 0 Pseudoxanthomonas spadix species 0 Acidiferrobacterales order 1 2006 1692040 6 32 48 5 1692041 1974 1 family Acidiferrobacteraceae 0 19 2 1692042 759 1 genus Sulfurifustis 0 1 1675686 Sulfurifustis variabilis species 0 740 2 1744881 7 genus Sulfuricaulis 0 1167 1 1620215 1 1160 0 Sulfuricaulis limicola species 44 135623 22 order Vibrionales 0 23083 1 Vibrionaceae family 0 23061 1 43 641 113 2042066 2 1 0 Paraphotobacterium genus 1 429 1755811 1 428 0 species Paraphotobacterium marinum 662 30 344 0 genus Vibrio 1 18497 2614977 2 658 0 no rank 371 Vibrio sp. EJY3 species 0 1 1116375 287 0 Vibrio sp. 2521-89 species 2014742 1 1 29494 461 Vibrio furnissii species 0 1 1891919 303 species group 0 29498 1 0 Vibrio tubiashii species 303 212663 1 0 Vibrio tasmaniensis species 256 1534743 1 0 Vibrio hyugaensis species 380 1 2025808 288 Vibrio qinghaiensis species 0 1 674 543 Vibrio mimicus species 0 28173 1 473 0 species Vibrio nigripulchritudo 10 717610 7357 species group 0 696485 1 0 species Vibrio owensii 594 190895 1 0 species Vibrio rotiferianus 316 776 Vibrio natriegens species 0 1 691 2 2315253 species subgroup 0 967 346 0 Vibrio antiquarius species 150340 1 50719 1 0 species Vibrio diabolicus 621 Vibrio campbellii species 0 1360 1 680 337 0 Vibrio jasicida species 766224 1 1050 0 species Vibrio alginolyticus 663 1 669 1 0 species Vibrio harveyi 835 1 670 1122 Vibrio parahaemolyticus species 0 1 1435069 species Vibrio tritonius 0 397 species Vibrio breoganii 0 273 1 553239 733 Vibrio anguillarum species 0 1 55601 322 species Vibrio scophthalmi 0 1 45658 190893 1 966 0 Vibrio coralliilyticus species 1328 species Vibrio fluvialis 0 1 676 430 Vibrio tapetis species 0 1 52443 1932 species Vibrio vulnificus 0 1 672 490 Vibrio gazogenes species 0 1 687 563 0 Vibrio cholerae species 666 1 1 1230 0 Aliivibrio genus 6 511678 4 1 80852 494 species Aliivibrio wodanis 0 1 668 395 species Aliivibrio fischeri 0 40269 1 0 Aliivibrio salmonicida species 335 1 246861 2 1 519 0 genus Grimontia 673 1 518 0 Grimontia hollisae species 2273 1 Photobacterium genus 0 9 4 657 1 1295392 Photobacterium gaetbulicola species 0 931 1 74109 species Photobacterium profundum 0 557 0 Photobacterium damselae species 776 38293 1 6 135625 29 1 14927 0 Pasteurellales order 28 712 1114 Pasteurellaceae family 0 14921 1 2094023 2 18 0 genus Glaesserella 1 626 1 738 608 Glaesserella parasuis species 0 3 745 3 Pasteurella genus 0 1058 1 0 species Pasteurella multocida 785 747 1 1 754 270 species Pasteurella dagmatis 0 0 genus Mannheimia 1 1360 75984 4 13 2645054 1 243 0 no rank 1 1432056 243 species Mannheimia sp. USDA-ARS-USMARC-1261 0 473 Mannheimia haemolytica species 0 1 75985 1 85404 species Mannheimia varigena 0 631 416916 3 17 0 Aggregatibacter genus 1 1551 612 0 Aggregatibacter actinomycetemcomitans species 714 1 species Aggregatibacter aphrophilus 0 922 1 732 1999 1 genus Actinobacillus 0 6 5 713 716 1 482 0 species Actinobacillus suis 67854 1 0 species Actinobacillus succinogenes 386 417 Actinobacillus equuli species 0 1 718 715 1 0 species Actinobacillus pleuropneumoniae 708 genus 0 1133 1 214906 1 731 1133 species Histophilus somni 0 724 6 12 0 genus Haemophilus 1 3184 2609962 1 277 0 no rank 712310 1 0 species Haemophilus sp. oral taxon 036 277 1 727 1281 species Haemophilus influenzae 0 948 Haemophilus parainfluenzae species 0 1 729 1 730 [Haemophilus] ducreyi species 0 228 1 249188 Haemophilus pittmaniae species 0 438 697331 1 0 genus 572 1 157673 572 species [Mannheimia] succiniciproducens 0 0 genus 1903 476528 1 species Bibersteinia trehalosi 0 1903 1 47735 421 genus 0 1 155493 421 0 species Gallibacterium anatis 750 1 3559 0 no rank 118884 11 349742 2 4 0 Sedimenticola genus 1 736 1543721 1 0 species Sedimenticola thiotaurini 732 2 655184 387 genus 0 species Candidatus Thioglobus autotrophicus 0 146 1 1705394 1 1427364 Candidatus Thioglobus singularis species 0 241 679 1 Thiolapillus genus 0 21 2 1608298 1 1076588 658 Thiolapillus brandeum species 0 198346 1 190 0 clade 1 186490 190 species Candidatus Baumannia cicadellinicola 0 1 1524249 835 genus 0 1 1249552 Pseudohongiella spirulinae species 0 835 32036 3 732 0 clade 1541743 1 0 genus 283 Candidatus Ruthia magnifica species 0 283 1 386487 410330 1 0 species Calyptogena okutanii thioautotrophic gill symbiont 170 1 113267 279 Bathymodiolus septemdierum thioautotrophic gill symbiont species 0 388 order 0 2 135615 868 2 388 0 family genus Dichelobacter 0 388 1 2 869 15 1 870 373 species Dichelobacter nodosus 0 337 135613 52 1 23596 0 order Chromatiales 120 72276 18 1 9471 0 family Ectothiorhodospiraceae 48 2 1051 1249 1 Ectothiorhodospira genus 0 1 2684909 1201 no rank 0 species Ectothiorhodospira sp. BSL-9 0 1201 1 1442136 4802 1 genus Thioalkalivibrio 0 89 6 106633 970 0 species Thioalkalivibrio versutus 106634 1 1 186931 844 species Thioalkalivibrio nitratireducens 0 1496 0 species Thioalkalivibrio sulfidiphilus 1033854 1 108010 1 0 species Thioalkalivibrio paradoxus 837 566 0 no rank 2621013 1 1 396595 566 species Thioalkalivibrio sp. K90mix 0 133193 2 8 0 Alkalilimnicola genus 1 1136 1 351052 Alkalilimnicola ehrlichii species 0 1128 85108 2 5 0 Halorhodospira genus 1 858 853 species Halorhodospira halophila 0 1 1053 1 460 0 genus Acidihalobacter 2 1765964 2 458 0 species Acidihalobacter prosperus 160660 1 1 846 0 Spiribacter genus 6 1335745 3 1335746 1 256 0 species Spiribacter salinus 1335757 1 584 0 Spiribacter curvatus species Wenzhouxiangellaceae family 0 817 1 3 1676141 4 23 1676142 2 1 813 0 genus Wenzhouxiangella Wenzhouxiangella marina species 0 790 1 1579979 1738654 3 1 0 Woeseiaceae family 1 361 1 2 1738655 360 1 genus Woeseia 0 1 1548547 359 Woeseia oceani species 0 1 9441 0 family Chromatiaceae 116 1046 18 1851 1 Thiodictyon genus 0 20 2 53392 0 species Candidatus Thiodictyon syntrophicum 1831 1166950 1 240 1 Candidatus Nitrosoglobus genus 0 1 2 1980513 1 1630141 239 species Candidatus Nitrosoglobus terrae 0 1 82569 no rank 0 1335 1978339 1 1335 0 Chromatiaceae bacterium 2141T.STBD.0c.01a species 1192 1 Marichromatium genus 0 27 2 85076 Marichromatium purpuratum species 0 1165 1 37487 1 1015 0 genus Thioflavicoccus 11 156885 2 1004 species Thioflavicoccus mobilis 0 1 80679 2 85072 2 1 1505 0 Allochromatium genus 1 1049 Allochromatium vinosum species 0 1503 2 13724 17 genus Thiocystis 0 1288 1 species Thiocystis violascens 0 1271 1 73141 5 4 1227 899 1 Nitrosococcus genus 0 0 species Nitrosococcus oceani 304 1229 1 473531 1 292 0 Nitrosococcus watsonii species 298 0 Nitrosococcus halophilus species 133539 1 0 no rank 1127 451214 2 27 1273155 2 1 1127 0 Thiohalobacter genus 0 species Thiohalobacter thiocyanaticus 1100 585455 1 1145 1 Halothiobacillaceae family 0 8 4 255526 genus Halothiobacillus 0 1137 1 3 109262 9 430 Halothiobacillus neapolitanus species 0 1 927 0 no rank 698 2636392 1 698 0 species Halothiobacillus sp. LS2 1860122 1 449719 3 6 0 Granulosicoccaceae family 1 897 1 437504 2 1 891 0 Granulosicoccus genus 437505 1 0 species Granulosicoccus antarcticus 890 33811 2 0 no rank 1512 1248727 1 0 endosymbiont of unidentified scaly snail isolate Monju species 977 1 83406 535 gamma proteobacterium HdN1 species 0 3055 1 class Oligoflexia 0 1 11 1553900 order 0 1096 5 2024979 3 263369 1 Bacteriovoracaceae family 0 650 1 4 2 146784 649 1 Bacteriovorax genus 0 960 1 645 0 Bacteriovorax stolpii species 1652132 2 0 family 446 0 Halobacteriovorax genus 1 446 1652133 2 1 1 97084 species Halobacteriovorax marinus 0 445 1958 1 Bdellovibrionales order 0 56 5 213481 0 Bdellovibrionaceae family 1 1902 213483 4 2 Bdellovibrio genus 0 1900 1 3 958 8 Bdellovibrio bacteriovorus species 0 1697 1 959 0 species Bdellovibrio exovorus 195 453816 1 346183 1 class Alphaproteobacteria 0 1219 552 28211 145509 1 order Rhizobiales 0 1703 209 356 64 335928 7 1 4552 0 family Xanthobacteraceae Xanthobacter genus 0 1839 1 2 279 30 1 280 Xanthobacter autotrophicus species 0 1809 152053 2 39 0 Starkeya genus 1 1170 0 species Starkeya novella 1131 921 1 0 Azorhizobium genus 1 1479 6 2 38 7 1 0 Azorhizobium caulinodans species 1441 family Chelatococcaceae 0 2413 1 4 2036754 89 28209 3 61 0 genus Chelatococcus 1 2324 2638111 1 1375 0 no rank 1 1702325 1375 species Chelatococcus sp. CO-6 0 Chelatococcus daeguensis species 0 888 1 444444 27871 1 Bradyrhizobiaceae family 0 550 26 41294 0 Bradyrhizobium genus 1 13713 374 11 422 1363 0 Bradyrhizobium oligotrophicum species 44255 1 2000 species Bradyrhizobium diazoefficiens 0 1 1355477 1 1274631 species Bradyrhizobium icense 0 729 1677 Bradyrhizobium japonicum species 0 1 375 7522 0 no rank 2631580 6 1163 species Bradyrhizobium sp. ORS 285 0 1 115808 1 114615 1048 species Bradyrhizobium sp. ORS 278 0 1223566 1 0 Bradyrhizobium sp. CCGE-LA001 species 1388 288000 1 1411 0 species Bradyrhizobium sp. BTAi1 1 2057741 species Bradyrhizobium sp. SK17 0 1267 1245 species Bradyrhizobium sp. 0 1 376 2 1649510 2 1 502 0 Variibacter genus 1 1333996 500 Variibacter gotjawalensis species 0 911 3 7 0 Nitrobacter genus 1 1049 434 0 Nitrobacter winogradskyi species 913 1 1 912 species Nitrobacter hamburgensis 0 608 6325 1 Rhodopseudomonas genus 0 55 2 1073 1076 1 6270 0 species Rhodopseudomonas palustris Bosea genus 0 5165 1 5 85413 93 3680 0 no rank 2653178 3 1 1842539 Bosea sp. RAC05 species 0 1262 1410 0 Bosea sp. AS-1 species 2015316 1 species Bosea sp. PAMC 26642 0 1008 1 1792307 1526658 1 1392 0 Bosea vaviloviae species 2 40136 3 genus Oligotropha 0 567 1 564 Oligotropha carboxidovorans species 0 1 40137 7 255475 25 family Aurantimonadaceae 0 4182 1 58 4 293088 3190 1 Martelella genus 0 1 2629616 no rank 0 1080 1 686597 species Martelella sp. AD-3 0 1080 991 species Martelella endophytica 0 1 1486262 1 293089 species Martelella mediterranea 0 1061 Aureimonas genus 0 967 1 2 414371 5 2615206 1 962 0 no rank 1349819 1 962 0 Aureimonas sp. AU20 species 0 Brucellaceae family 1 5870 118882 20 64 0 genus Brucella 1 2615 234 14 1068 90 0 species Brucella melitensis 29459 1 1 444163 species Brucella microti 0 52 136 0 species Brucella pinnipedialis 120576 1 2632610 4 0 no rank 727 1 1885919 228 Brucella sp. 141012304 species 0 1 1891098 49 Brucella sp. 2002734562 species 0 1149952 1 0 species Brucella sp. 09RB8471 236 1 1844051 species Brucella sp. 09RB8910 0 214 1 236 Brucella ovis species 0 37 species Brucella vulpis 0 132 1 981386 53 0 species Brucella suis 29461 1 1 235 76 species Brucella abortus 0 120577 1 136 0 species Brucella ceti 108 0 Brucella canis species 36855 1 47 528 5 1 3191 0 Ochrobactrum genus 419475 1 0 Ochrobactrum pseudogrignonense species 719 1 529 Ochrobactrum anthropi species 0 1023 271865 1 615 0 Ochrobactrum sp. A44 species Ochrobactrum pituitosum species 0 787 1 571256 Methylobacteriaceae family 0 17629 1 15 119045 109 0 genus 6315 2282523 3 1692 species Methylobacterium populi 0 1 223967 1 29429 897 species Methylobacterium zatmanii 0 3726 0 species Methylobacterium extorquens 408 1 genus Microvirga 0 1467 1 2 186650 41 1 1882682 1426 Microvirga ossetica species 0 9738 1 Methylobacterium genus 0 576 9 407 species Methylobacterium radiotolerans 0 1432 1 31998 334852 1 0 Methylobacterium oryzae species 947 3 2615210 3317 no rank 0 1306 Methylobacterium sp. 4-46 species 0 1 426117 0 species Methylobacterium sp. C1 1194 1479019 1 925818 1 0 Methylobacterium sp. AMS5 species 817 418223 1 924 0 species Methylobacterium phyllosphaerae 270351 1 1346 0 species Methylobacterium aquaticum 1196 0 Methylobacterium nodulans species 114616 1 3 119043 3 Rhodobiaceae family 0 516 1 genus Parvibaculum 0 513 1 2 256616 20 493 0 Parvibaculum lavamentivorans species 256618 1 120 45401 19 1 10137 0 family Hyphomicrobiaceae 1 1354 0 genus Rhodoplanes 57 29407 2 2619116 1 0 no rank 1297 1297 Rhodoplanes sp. Z2-YC6860 species 0 1 674703 0 genus Hyphomicrobium 1 2664 81 4 38 977 Hyphomicrobium nitrativorans species 0 1 1427356 1 2619925 no rank 0 883 883 0 species Hyphomicrobium sp. MC1 717785 1 Hyphomicrobium denitrificans species 0 766 1 53399 1010 1 genus Blastochloris 0 22 2 59282 988 species Blastochloris viridis 0 1 1079 598 1 Rhodomicrobium genus 0 8 2 1068 1 1069 590 species Rhodomicrobium vannielii 0 1 586 0 Pelagibacterium genus 26 1082930 2 0 Pelagibacterium halotolerans species 560 531813 1 genus Filomicrobium 0 548 1 2 119044 2 1608628 1 0 species Candidatus Filomicrobium marinum 546 46913 4 96 0 genus Devosia 1 3257 3 196773 no rank 0 3161 1 1736675 Devosia sp. A16 species 0 1304 0 Devosia sp. I507 species 750 2083786 1 1107 0 species Devosia sp. H5989 1643450 1 0 family Phyllobacteriaceae 1 12586 69277 20 102 genus Nitratireductor 0 725 1 2 245876 21 704 species Nitratireductor basaltis 0 1 472175 569 1 genus Chelativorans 0 7 2 449972 1 2643807 562 no rank 0 266779 1 0 species Chelativorans sp. BNC1 562 1 768 0 Hoeflea genus 5 274591 2 763 0 no rank 2614931 1 1620421 1 0 Hoeflea sp. IMCC20628 species 763 1 8626 0 genus Mesorhizobium 294 68287 9 1280 0 Mesorhizobium loti species 381 1 0 species Mesorhizobium amorphae 896 71433 1 0 no rank 1090 325217 1 Mesorhizobium sp. WSM1497 species 0 1090 1 278153 1 1670800 774 species Mesorhizobium sp. B7 0 0 Mesorhizobium japonicum species 1168 2066070 1 845 Mesorhizobium australicum species 0 1 536018 0 species Mesorhizobium ciceri 1263 39645 1 1 593909 1016 species Mesorhizobium opportunistum 0 31988 2 19 0 Aminobacter genus 1 1101 83263 1 0 Aminobacter aminovorans species 1082 0 Phyllobacterium genus 1 695 28100 2 8 1 1867719 Phyllobacterium zundukense species 0 687 475 53 82115 48635 1 family Rhizobiaceae 0 6 34019 3 Liberibacter genus 0 480 1 1273132 1 0 Liberibacter crescens species 74 0 Candidatus Liberibacter americanus species 87 309868 1 1 34021 species Candidatus Liberibacter asiaticus 0 41 82 species Candidatus Liberibacter africanus 0 1 34020 1 556287 species Candidatus Liberibacter solanacearum 0 193 0 no rank 35635 227290 34 1 8497 0 genus Agrobacterium 149 357 7 1 359 species Agrobacterium rhizogenes 0 1010 2632611 2 1638 0 no rank 1842536 1 758 0 Agrobacterium sp. RAC06 species 0 species Agrobacterium sp. H13-3 880 861208 1 999 0 Agrobacterium vitis species 373 1 4701 species group 0 2 1183400 1 1176649 985 Agrobacterium fabrum species 0 3716 0 Agrobacterium tumefaciens species 358 1 1 25383 0 Rhizobium genus 1780 379 25 1 398 904 species Rhizobium tropici 0 1 384 5788 species Rhizobium leguminosarum 0 1883 0 species Rhizobium phaseoli 396 1 19 2613769 no rank 0 11294 5 0 species Rhizobium sp. N741 1703967 1 Rhizobium sp. NXC24 species 0 867 1 2048897 species Rhizobium sp. CIAT894 0 1127 1 2020312 1 1869170 Rhizobium sp. S41 species 0 885 1 1703960 species Rhizobium sp. N113 0 10 7 species Rhizobium sp. N871 0 1 1703968 159 0 species Rhizobium sp. N1314 1703961 1 1703962 1 0 species Rhizobium sp. N1341 8 1 1703966 159 species Rhizobium sp. N731 0 1 2020311 species Rhizobium sp. Kim5 0 619 Rhizobium sp. N324 species 0 959 1 1703969 0 species Rhizobium sp. IRBG74 972 424182 1 0 Rhizobium sp. ACO-34A species 1335 1571470 1 0 species Rhizobium sp. 10195 1034 2028343 1 1914541 1 1074 0 Rhizobium sp. Y9 species 1301032 1 647 0 species Rhizobium sp. IE4771 1 1125847 664 Rhizobium sp. NT-26 species 0 103 0 Rhizobium sp. TAL182 species 2020313 1 1981173 1 660 0 species Rhizobium sp. NXC14 Rhizobium etli species 0 2494 1 29449 56730 1 0 species Rhizobium gallicum 1240 0 Neorhizobium genus 1 1755 1525371 2 5 1750 Neorhizobium galegae species 0 1 399 10196 no rank 0 10 227292 18 3 106591 2129 1 Ensifer genus 0 106592 1 1217 0 species Ensifer adhaerens 716925 1 0 species Ensifer sojae 894 1 8067 0 Sinorhizobium genus 150 28105 7 2015 species group 0 1 663276 0 species Sinorhizobium fredii 2015 380 1 1 110321 908 Sinorhizobium medicae species 0 1 194963 1149 species Sinorhizobium americanum 0 382 1 1865 0 species Sinorhizobium meliloti 1980 no rank 0 2 2613772 0 Sinorhizobium sp. RAC02 species 1245 1842534 1 0 Sinorhizobium sp. CCBAU 05631 species 735 794846 1 2 323620 92 genus Shinella 0 1849 1 1 2643062 no rank 0 1757 879274 1 0 Shinella sp. HZN7 species 1757 2426 no rank 0 5 119042 28 1734920 2 1 700 0 genus Pseudorhodoplanes 672 0 Pseudorhodoplanes sinuspersici species 1235591 1 0 Methyloceanibacter genus 1 734 1484898 2 12 722 0 Methyloceanibacter caenitepidi species 1384459 1 992 0 genus 1572860 1 Hartmannibacter diazotrophicus species 0 992 1 1482074 9 5 45404 1257 1 family Beijerinckiaceae 0 0 Methylocella genus 1 694 120652 2 4 1 199596 species Methylocella silvestris 0 690 1 554 0 Beijerinckia genus 2 532 2 552 0 species Beijerinckia indica 533 1 9 6 31993 2068 1 Methylocystaceae family 0 35 2 425 937 1 genus Methylosinus 0 902 Methylosinus trichosporium species 0 1 426 25 3 133 1122 1 genus Methylocystis 0 655015 1 619 0 species Methylocystis bryophila 0 no rank 478 2625913 1 478 Methylocystis sp. SC2 species 0 1 187303 9 772 18 1 3664 0 family Bartonellaceae 50 17 773 3655 1 genus Bartonella 0 0 Bartonella henselae species 115 38323 1 33047 1 94 0 species Bartonella vinsonii 201 0 species Bartonella grahamii 33045 1 species Bartonella ancashensis 0 148 1 1318743 Bartonella bacilliformis species 0 215 1 774 species Bartonella apis 0 1178 1 1686310 species Bartonella tribocorum 0 195 1 85701 402 0 Bartonella quintana species 803 1 Bartonella clarridgeiae species 0 276 1 56426 2645622 6 0 no rank 668 1933906 1 111 0 Bartonella sp. JB15 species 111 Bartonella sp. JB63 species 0 1 1933907 87 Bartonella sp. Raccoon60 species 0 1 1933912 species Bartonella sp. A1379B 0 84 1 1933910 105 species Bartonella sp. 1-1C 0 1 515256 species Bartonella sp. WD16.2 0 170 1 1933904 0 Bartonella australis species 113 388640 1 0 order 587 2800059 2 587 0 family 2800061 2 74317 2 13 0 genus Maricaulis 1 587 574 0 species Maricaulis maris 74318 1 82117 7 0 no rank 3416 34 2 1632780 1236 1 genus Phreatobacter 0 1202 0 species Phreatobacter sp. S-12 1868589 1 839 1 Micavibrio genus 0 14 2 213485 0 species Micavibrio aeruginosavorus 825 349221 1 1 62654 clade 0 308 1 767891 308 genus 0 species Candidatus Puniceispirillum marinum 0 308 1 767892 2 991903 8 Polymorphum genus 0 1033 1 991904 1 1025 0 species Polymorphum gilvum 2800060 5 1307 0 order 69657 5 20 0 Hyphomonadaceae family 1 1307 3 85 28 genus Hyphomonas 0 1053 1 81032 1 616 0 Hyphomonas neptunium species 1 2630699 409 no rank 0 409 Hyphomonas sp. Mor2 species 0 1 1906738 2723 1 0 genus 234 234 species Hirschia baltica 0 1 2724 66 204441 534 Rhodospirillales order 0 53831 1 41295 30 486 0 family Rhodospirillaceae 1 31331 0 genus Niveispirillum 1 2008 1543704 2 36 1 1612173 Niveispirillum cyanobacteriorum species 0 1972 0 Rhodospirillum genus 1 2629 1081 3 57 1085 1 0 species Rhodospirillum rubrum 924 1648 0 Rhodospirillum centenum species 34018 1 2 1543705 15 genus Nitrospirillum 0 2465 1 Nitrospirillum amazonense species 0 2450 1 28077 1 1263978 genus 0 339 1263979 1 339 0 species Candidatus Endolissoclinum faulkneri 602 1 genus Magnetospira 0 5 2 1182780 1 2685734 no rank 0 597 597 0 species Magnetospira sp. QH-2 1288970 1 2 1612157 3 Pararhodospirillum genus 0 822 1 0 Pararhodospirillum photometricum species 819 1084 1 10 168934 3 1 1733 0 genus Thalassospira 220697 1 891 0 Thalassospira xiamenensis species Thalassospira sp. CSC3H3 species 0 832 1 2048283 0 genus Tistrella 1 1751 171436 2 48 0 species Tistrella mobilis 1703 171437 1 422 5 191 11391 1 Azospirillum genus 0 2313 0 species Azospirillum thiophilum 528244 1 1224 0 Azospirillum humicireducens species 1226968 1 192 1 0 Azospirillum brasilense species 3660 1 193 3772 species Azospirillum lipoferum 0 genus Haematospirillum 0 277 1 2 1804663 1 276 Haematospirillum jordaniae species 0 1 1549855 13134 5 154 0 genus Magnetospirillum 1 6828 0 species Magnetospirillum magneticum 1618 84159 1 3293 0 no rank 2617991 2 0 species Magnetospirillum sp. XM-1 1701 1663591 1 1639348 1 0 species Magnetospirillum sp. ME-1 1592 1 55518 species Magnetospirillum gryphiswaldense 0 1763 35 433 304 Acetobacteraceae family 0 21966 1 1 2 91914 498 1 genus Asaia 0 497 0 Asaia bogorensis species 91915 1 1602345 2 10 0 Parasaccharibacter genus 1 590 Parasaccharibacter apium species 0 580 1 1510841 89583 2 23 0 genus Gluconacetobacter 1 1180 1157 0 species Gluconacetobacter diazotrophicus 33996 1 1 2 153497 717 1 genus Kozakia 0 Kozakia baliensis species 0 716 1 153496 434 8 56 0 genus Acetobacter 1 5823 1076596 1 0 species Acetobacter persici 532 2040 Acetobacter pasteurianus species 0 1 438 1 65959 585 Acetobacter pomorum species 0 682 0 Acetobacter oryzifermentans species 1633874 1 1 151157 subgenus 0 831 435 1 831 0 species Acetobacter aceti 446692 1 0 species Acetobacter senegalensis 495 1 104102 species Acetobacter tropicalis 0 602 62 3 522 1511 1 Acidiphilium genus 0 524 1 726 0 species Acidiphilium cryptum 62140 1 723 0 Acidiphilium multivorum species genus Gluconobacter 0 1936 1 3 441 21 318683 1 626 0 species Gluconobacter albidus 1289 Gluconobacter oxydans species 0 1 442 5 1434011 77 genus Komagataeibacter 0 3671 1 757 0 species Komagataeibacter nataicola 265960 1 1 1177712 589 Komagataeibacter medellinensis species 0 28448 1 1666 0 Komagataeibacter xylinus species 1 33995 Komagataeibacter europaeus species 0 582 Granulibacter genus 0 1986 1 2 364409 33 Granulibacter bethesdensis species 0 1953 1 364410 125216 3 65 0 genus Roseomonas 1 3175 Roseomonas gilardii species 0 1536 1 257708 0 no rank 1574 2617492 1 1574 Roseomonas sp. FDAARGOS_362 species 0 1 2018065 2 320496 1 Neoasaia genus 0 575 1 574 0 Neoasaia chiangmaiensis species 320497 1 0 order Sphingomonadales 1 54742 204457 82 398 59 41297 732 family Sphingomonadaceae 0 42605 1 1 13119 0 Sphingomonas genus 246 13687 15 880 0 Sphingomonas melonis species 152682 1 no rank 0 5073 6 196159 745310 1 870 0 species Sphingomonas sp. MM-1 species Sphingomonas sp. LM7 0 763 1 1938607 1 1961362 826 species Sphingomonas sp. NIC1 0 species Sphingomonas sp. KC8 0 647 1 1030157 1 1327635 722 species Sphingomonas sp. Cra20 0 1390395 1 1245 0 Sphingomonas sp. LK11 species 397260 1 0 species Sphingomonas sanxanigenens 1063 1 1549858 1117 Sphingomonas taxi species 0 93064 1 847 0 species Sphingomonas koreensis 0 Sphingomonas wittichii species 1 2308 160791 2 1207 1283312 1 1101 0 strain Sphingomonas sp. DC-6 Sphingomonas panacis species 0 779 1 1560345 806 species Sphingomonas hengshuiensis 0 1 1609977 235 165695 15 1 12338 0 genus Sphingobium 76947 1 0 species Sphingobium herbicidovorans 694 332055 1 0 species Sphingobium indicum 1173 13690 1 0 species Sphingobium yanoikuyae 934 1054 species Sphingobium chlorophenolicum 0 1 46429 4758 no rank 0 6 2611147 674 Sphingobium sp. RAC03 species 0 1 1843368 627192 1 698 0 Sphingobium sp. SYK-6 species 1 407020 Sphingobium sp. MI1205 species 0 645 1315974 1 881 0 Sphingobium sp. TKS species Sphingobium sp. EP60837 species 0 493 1 1855519 1 484429 1367 species Sphingobium sp. YBL2 0 120107 1 849 0 species Sphingobium cloacae 0 Sphingobium hydrophobicum species 1162 1673076 1 1332080 1 0 species Sphingobium baderi 571 species Sphingobium japonicum 0 908 1 332056 6 2 1649486 1185 1 genus Rhizorhabdus 0 1179 0 Rhizorhabdus dicambivorans species 1850238 1 150203 2 14 0 Blastomonas genus 1 968 no rank 0 954 1 2626550 0 Blastomonas sp. RAC04 species 954 1842535 1 genus 0 747 1 2685927 747 0 species Sphingomonas sp. JJ-A5 1921510 1 Sphingopyxis genus 0 6124 1 10 165697 138 1 117207 species Sphingopyxis alaskensis 0 544 1 267128 779 Sphingopyxis granuli species 0 443 0 Sphingopyxis terrae species 33052 1 0 species Sphingopyxis macrogoltabida 1200 33050 1 585 Sphingopyxis fribergensis species 0 1 1515612 no rank 0 2435 4 2614943 Sphingopyxis sp. QXT-31 species 0 815 1 1357916 species Sphingopyxis sp. 113P3 0 648 1 292913 254 Sphingopyxis sp. LPB0140 species 0 1 1913578 718 species Sphingopyxis sp. MG 0 1 1866325 0 genus Sphingorhabdus 1 1100 1434046 3 29 1071 no rank 0 2 2614947 2077182 1 0 species Sphingorhabdus sp. YGSMI21 510 0 species Sphingorhabdus sp. M41 561 1806885 1 1 775 0 Citromicrobium genus 7 72173 2 0 no rank 768 2630544 1 0 species Citromicrobium sp. JL477 768 1634516 1 541 2 8 0 Zymomonas genus 1 894 886 0 species Zymomonas mobilis 542 1 2709685 1 0 genus 346 0 Sphingorhabdus flavimaris species 346 266812 1 1 4277 0 Novosphingobium genus 66 165696 5 no rank 0 1227 1 2644732 1 702113 1227 Novosphingobium sp. PP1Y species 0 1 205844 1044 Novosphingobium pentaromativorans species 0 1 158500 species Novosphingobium resinovorum 0 980 1 48935 Novosphingobium aromaticivorans species 0 960 335929 22 265 0 family Erythrobacteraceae 1 11739 2800788 6 3160 0 no rank 1 1373 0 genus Porphyrobacter 70 1111 3 1303 no rank 0 2 2683265 1 2023229 species Porphyrobacter HT-58-2 0 718 1 1896196 585 Porphyrobacter sp. LM 6 species 0 3 1041 49 genus Erythrobacter 0 1787 1 species Erythrobacter litoralis 0 982 1 39960 1 1112 756 species Porphyrobacter neustonensis 0 2 2800681 1268 genus 0 1648404 1 409 0 Erythrobacter atlanticus species 859 species Erythrobacter gangjinensis 0 1 502682 0 genus Altererythrobacter 1 1661 361177 4 90 434 0 Altererythrobacter ishigakiensis species 476157 1 642 Altererythrobacter atlanticus species 0 1 1267766 1 361183 495 Altererythrobacter epoxidivorans species 0 3 1295327 39 Croceicoccus genus 0 1403 1 1 450378 species Croceicoccus marinus 0 773 0 Croceicoccus naphthovorans species 591 1348774 1 1247 0 genus 1855416 2 584 species Erythrobacter flavus 0 1 192812 663 Erythrobacter seohaensis species 0 1 266951 1 2800682 808 genus 0 808 species Altererythrobacter namhicola 0 1 645517 960 0 genus 2800686 2 437 0 Altererythrobacter mangrovi species 1982042 1 0 Altererythrobacter dongtanensis species 523 692370 1 genus 0 967 1 2800685 967 0 species Altererythrobacter marensis 543877 1 54526 8 3 0 order Pelagibacterales 1 813 2 6 1655514 698 1 family Pelagibacteraceae 0 360 no rank 0 2 1655516 144 alpha proteobacterium HIMB59 species 0 1 744985 859653 1 216 0 species alpha proteobacterium HIMB5 1 3 198251 336 1 Candidatus Pelagibacter genus 0 0 no rank 193 2647897 1 1002672 1 0 species Candidatus Pelagibacter sp. IMCC9063 193 1 198252 Candidatus Pelagibacter ubique species 0 142 genus 0 112 1 2045213 species Candidatus Fonsibacter ubiquis 0 112 1 1925548 204455 90 474 0 order Rhodobacterales 1 61438 89 31989 1276 family Rhodobacteraceae 0 60964 1 557 1 genus Jannaschia 0 10 2 188905 no rank 0 547 1 2645469 1 290400 species Jannaschia sp. CCS1 0 547 74032 1 0 genus 906 74033 1 906 0 species Antarctobacter heliothermus genus Thalassococcus 0 9 1 436357 0 genus Marinovum 1 1167 367771 2 9 1158 species Marinovum algicola 0 1 42444 1397 1 genus Ketogulonicigenium 0 5 3 92944 92947 1 0 Ketogulonicigenium robustum species 692 0 Ketogulonicigenium vulgare species 700 92945 1 0 genus Phaeobacter 1 6285 302485 5 88 221822 1 0 species Phaeobacter inhibens 2201 429 0 species Phaeobacter porticola 1844006 1 1 60890 1653 Phaeobacter gallaeciensis species 0 Phaeobacter piscinae species 0 1914 1 1580596 1579315 1 0 genus 211 211 0 species Halocynthiibacter arcticus 1579316 1 3 2433 3 Roseobacter genus 0 995 1 519 species Roseobacter litoralis 0 1 42443 473 0 species Roseobacter denitrificans 2434 1 Roseibacterium genus 0 616 1 2 159345 5 159346 1 611 0 species Roseibacterium elongatum 0 Leisingera genus 1 1149 191028 2 9 1 133924 1140 Leisingera methylohalidivorans species 0 Paracoccus genus 0 9908 1 9 265 156 0 Paracoccus sp. CBA4604 species 849 2065379 1 1 1945662 species Paracoccus contaminans 0 1103 0 species Paracoccus yeei 1935 147645 1 34004 1 1247 0 species Paracoccus aminovorans 1 266 species Paracoccus denitrificans 0 1546 684 0 no rank 246570 1 0 species Paracoccus sp. BM15 684 1529068 1 species Paracoccus aminophilus 0 869 1 34003 1077935 1 1519 0 species Paracoccus zhejiangensis 0 genus 415 1759396 1 0 no rank 415 2622455 1 415 0 species Marivivens sp. JLT3646 1920883 1 58842 2 3 0 Sagittula genus 1 1336 2624628 1 1333 0 no rank 1 2009329 species Sagittula sp. P11 0 1333 263377 2 0 genus 2606 1 1229727 Thiobacimonas profunda species 0 1516 1090 0 no rank 2640570 1 1090 0 Yangia sp. CCB-MM3 species 1792508 1 4 478070 44 genus Labrenzia 0 3145 1 0 species Labrenzia aggregata 970 187304 1 2131 no rank 0 2 2648686 1 1674922 species Labrenzia sp. CP4 0 953 species Labrenzia sp. VG12 0 1178 1 2021862 genus 0 825 1 1649279 1 379347 825 species Ruegeria mobilis 0 1 2 309512 905 1 genus Dinoroseobacter 0 1 215813 904 Dinoroseobacter shibae species 0 58840 2 0 no rank 1530 2033435 1 0 Rhodobacteraceae bacterium QY30 species 727 Rhodobacteraceae bacterium species 0 803 1 1904441 71 1060 5 1 5532 0 Rhodobacter genus Rhodobacter capsulatus species 0 950 1 1061 1578 no rank 0 2 196779 1 2033869 Rhodobacter sp. CZR27 species 0 1008 0 Rhodobacter sp. LPB0142 species 570 1850250 1 1063 1 0 Rhodobacter sphaeroides species 2933 1 543 0 genus Roseovarius 4 74030 2 539 Roseovarius mucosus species 0 1 215743 1 2 1097466 1393 1 genus Defluviimonas 0 1392 0 species Defluviimonas alba 1335048 1 1 788 0 Tateyamaria genus 1 299261 2 1 299262 787 Tateyamaria omphalii species 0 119541 2 1 0 Rhodobaca genus 1 531 species Rhodobaca barguzinensis 0 530 1 441209 18 5 875170 3188 1 genus Celeribacter 0 225 0 species Celeribacter marinus 1397108 1 1208324 1 0 species Celeribacter indicus 1175 628 0 species Celeribacter ethanolicus 1758178 1 1 1411902 species Celeribacter manganoxidans 0 1142 genus Loktanella 0 1 1 245186 52 4 34008 3109 1 Rhodovulum genus 0 2 2631432 1694 no rank 0 0 Rhodovulum sp. P5 species 805 1564506 1 0 Rhodovulum sp. MB263 species 889 308754 1 1363 0 species Rhodovulum sulfidophilum 35806 1 1284657 1 275 0 genus 275 0 species Planktomarina temperata 1284658 1 2 227873 23 genus Pannonibacter 0 1641 1 1618 Pannonibacter phragmitetus species 0 1 121719 60136 3 7 0 Sulfitobacter genus 1 1797 no rank 0 748 1 196795 1 1917485 748 Sulfitobacter sp. AM1-D1 species 0 species Sulfitobacter pseudonitzschiae 0 1042 1 1402135 0 genus Pelagibaca 1 1111 360528 2 7 species Pelagibaca abyssi 0 1104 1 1250539 1 1304 0 Confluentimicrobium genus 9 1609958 2 1295 0 no rank 2643318 1 0 species Confluentimicrobium sp. EMB200-NS6 1295 1609966 1 0 genus 913 2211641 1 species Loktanella vestfoldensis 0 913 1 245188 1 1087 0 Octadecabacter genus 3 53945 4 Octadecabacter arcticus species 0 457 1 53946 1 1217908 300 species Octadecabacter antarcticus 0 327 0 species Octadecabacter temperatus 1458307 1 0 Ruegeria genus 1 1813 97050 3 9 0 no rank 540 2625375 1 species Ruegeria sp. TM1040 0 540 1 292414 89184 1 0 species Ruegeria pomeroyi 1264 2 285107 5 Thioclava genus 0 700 1 1915078 1 695 0 species Thioclava nitratireducens 0 Holosporales order 1 687 1921002 5 8 2100208 1 0 family 166 1509243 1 166 0 genus 1 1509244 166 Candidatus Nucleicultrix amoebiphila species 0 0 family 223 1777752 2 1 1521255 2 1 223 0 genus Candidatus Paracaedibacter 222 0 species Candidatus Paracaedibacter acanthamoebae 91604 1 44746 1 0 family 290 no rank 0 290 1 204454 290 0 endosymbiont of Acanthamoeba sp. UWC8 species 86106 1 3 255473 order 0 184 5 255474 3 1 184 0 family Parvularculaceae 2 208215 1 genus Parvularcula 0 179 1 species Parvularcula bermudensis 0 178 1 208216 423 1 Magnetococcales order 0 2 3 1191478 1191479 2 2 0 family Magnetococcaceae 1 421 419 0 genus 162171 1 1 1124597 species Magnetococcus marinus 0 419 204458 20 120 0 Caulobacterales order 1 16470 0 family Caulobacteraceae 1 16350 76892 19 239 no rank 0 544 1 81440 1759059 1 544 0 species Caulobacteraceae bacterium OTSz_A_272 75 6 115 0 genus Caulobacter 1 7626 2648921 1 0 no rank 1792 1 366602 1792 Caulobacter sp. K31 species 0 1 69395 771 species Caulobacter henricii 0 0 Caulobacter mirabilis species 1204 69666 1 88688 1 0 Caulobacter segnis species 1189 species Caulobacter vibrioides 0 2555 1 155892 0 Brevundimonas genus 1 5707 41275 7 120 588932 1 0 species Brevundimonas naejangsanensis 727 no rank 0 2928 3 2622653 species Brevundimonas sp. GW460-12-10-14-LB2 0 980 1 1827469 1 1938605 1029 Brevundimonas sp. LM2 species 0 Brevundimonas sp. DS20 species 0 919 1 1532555 74313 1 0 species Brevundimonas subvibrioides 1185 747 Brevundimonas vesicularis species 0 1 41276 27 76890 2 1 938 0 genus Asticcacaulis 1 78587 911 Asticcacaulis excentricus species 0 9 2 20 1296 1 genus Phenylobacterium 0 species Phenylobacterium zucineum 0 1287 1 284016 1 5557 0 order Rickettsiales 17 766 51 1 2734 0 family Rickettsiaceae 5 775 26 2115980 1 144 0 genus 2115978 1 144 0 Candidatus Phycorickettsia trachydisci species 24 33988 2585 tribe 0 69474 1 0 genus 245 245 species Orientia tsutsugamushi 0 1 784 Rickettsia genus 0 2340 1 23 780 193 114292 2 0 species group 317 151 species Rickettsia prowazekii 0 1 782 0 species Rickettsia typhi 166 785 1 17 114277 species group 0 1007 37 0 species Rickettsia peacockii 47589 1 Rickettsia felis species 0 282 1 42862 787 1 0 Rickettsia australis species 136 species Rickettsia slovaca 0 13 1 35794 0 species Rickettsia amblyommatis 95 33989 1 35792 1 0 Rickettsia parkeri species 20 species Rickettsia monacensis 0 75 1 109232 1 35790 34 Rickettsia japonica species 0 1 1105106 species Rickettsia philipii 0 15 1 781 species Rickettsia conorii 0 11 0 Rickettsia heilongjiangensis species 27 226665 1 Rickettsia montanensis species 0 25 1 33991 35791 1 34 0 Rickettsia massiliae species 48 Rickettsia africae species 0 1 35788 102 0 Rickettsia akari species 786 1 783 1 0 species Rickettsia rickettsii 28 25 Rickettsia rhipicephali species 0 1 33992 1129742 2 556 0 species group 235 Rickettsia canadensis species 0 1 788 1 33990 species Rickettsia bellii 0 321 267 0 no rank 114295 1 267 0 Rickettsia endosymbiont of Bemisia tabaci species 337479 1 87 0 family 1328881 1 0 genus 87 411566 1 0 Candidatus Midichloria mitochondrii species 87 234827 1 241 no rank 0 1 1699067 1528098 1 0 Rickettsiales bacterium Ac37b species 241 family Anaplasmataceae 0 2478 1 22 942 2 4 33993 2 Neorickettsia genus 0 342 1 950 1 209 0 species Neorickettsia risticii species Neorickettsia helminthoeca 0 78 1 33994 951 1 0 species Neorickettsia sennetsu 53 8 952 tribe 0 964 1 964 0 Wolbachia genus 13 953 8 no rank 0 951 7 2640676 Wolbachia endosymbiont of Drosophila melanogaster species 0 65 1 163164 0 Wolbachia sp. wRi species 183 66084 1 species Wolbachia endosymbiont of Onchocerca volvulus 0 67 1 77551 1 246273 118 Wolbachia endosymbiont of Cimex lectularius species 0 1 80849 147 Wolbachia endosymbiont of Brugia malayi species 0 1 100901 67 species Wolbachia endosymbiont of Onchocerca ochengi 0 1 77038 Wolbachia endosymbiont of Drosophila simulans species 0 304 805 1 Ehrlichia genus 0 5 6 943 1 106181 no rank 0 169 169 species Ehrlichia sp. HF 0 1 391036 4 106178 species group 0 631 142 species Ehrlichia canis 0 1 944 116 0 Ehrlichia muris species 35795 1 0 Ehrlichia chaffeensis species 164 945 1 209 0 Ehrlichia ruminantium species 779 1 365 0 genus 768 3 770 1 0 species Anaplasma marginale 89 140 0 species Anaplasma centrale 769 1 0 species group 136 106179 1 1 948 Anaplasma phagocytophilum species 0 136 187998 0 subphylum 68525 192 276 123 28221 137573 1 Deltaproteobacteria class 0 29 38 579 0 order Myxococcales 1 41281 6726 suborder 0 8 80812 0 Sandaracinaceae family 1 1325 1055686 3 6 1055688 2 21 0 genus Sandaracinus 1 1319 1298 0 Sandaracinus amylolyticus species 927083 1 35 49 5 1 5401 0 family Polyangiaceae Sorangium genus 0 4215 1 2 39643 39 4176 species Sorangium cellulosum 0 1 56 0 genus Chondromyces 1 1151 50 2 8 1143 species Chondromyces crocatus 0 1 52 31693 suborder 0 26 80811 8403 1 family Archangiaceae 0 155 9 39 Archangium genus 0 2230 1 2 47 29 2201 species Archangium gephyra 0 1 48 2 44 23 genus Melittangium 0 1846 1 83453 1 0 species Melittangium boletus 1823 12 2 40 2053 1 Stigmatella genus 0 1 41 species Stigmatella aurantiaca 0 2041 11 42 2 1 2119 0 genus Cystobacter 2108 0 Cystobacter fuscus species 43 1 88 5 1524215 6627 1 Anaeromyxobacteraceae family 0 1 6539 0 Anaeromyxobacter genus 131 161492 4 3199 no rank 0 2 2620896 404589 1 1347 0 species Anaeromyxobacter sp. Fw109-5 447217 1 1852 0 Anaeromyxobacter sp. K species 3209 Anaeromyxobacter dehalogenans species 0 1 161493 Vulgatibacteraceae family 0 1205 1 3 1524213 12 13 1524214 2 1 1193 0 genus Vulgatibacter 1391653 1 1180 0 species Vulgatibacter incomptus 111 31 9 1 15458 0 family Myxococcaceae 32 5 341 0 Myxococcus genus 1 10637 Myxococcus hansupus species 0 2301 1 1297742 1935 Myxococcus xanthus species 0 1 34 0 Myxococcus fulvus species 4240 33 1 83455 1 0 species Myxococcus stipitatus 1820 83461 3 71 0 Corallococcus genus 1 4710 Myxococcus macrosporus species 0 2103 1 35 2536 species Corallococcus coralloides 0 1 184914 3 224462 suborder 0 2283 3 224464 11 family Kofleriaceae 0 2283 1 18 162027 2 1 2272 0 genus Haliangium 80816 1 2254 0 species Haliangium ochraceum Desulfovibrionales order 0 53661 1 24 213115 384 348 18 194924 48430 1 family Desulfovibrionaceae 0 2794998 1 0 genus 1097 1097 Desulfovibrio salexigens species 0 1 880 genus Lawsonia 0 710 1 2 41707 4 Lawsonia intracellularis species 0 706 1 29546 genus 0 2060 1 2582840 873 1 2060 0 species Desulfovibrio africanus 0 Pseudodesulfovibrio genus 1 7345 2035811 4 76 2617 Pseudodesulfovibrio indicus species 0 1 1716143 2672 0 Pseudodesulfovibrio aespoeensis species 182210 1 1980 0 Pseudodesulfovibrio profundus species 57320 1 267 872 9 1 36870 0 genus Desulfovibrio 0 Desulfovibrio magneticus species 2749 184917 1 6392 Desulfovibrio desulfuricans species 0 1 876 0 no rank 3330 2593640 1 1 631220 Desulfovibrio sp. G11 species 0 3330 44742 1 0 Desulfovibrio fairfieldensis species 5781 1 58180 species Desulfovibrio alaskensis 0 2812 species Candidatus Desulfovibrio trichonymphae 0 1052 1 1725232 1 881 Desulfovibrio vulgaris species 0 7966 1 901 6521 Desulfovibrio piger species 0 213117 1 640 0 family genus 0 640 1 45662 0 Desulfohalobium retbaense species 640 45663 1 213116 4 82 0 family Desulfomicrobiaceae 1 4207 1 4125 0 Desulfomicrobium genus 38 898 3 132132 1 0 species Desulfomicrobium orale 2189 1898 0 Desulfomicrobium baculatum species 899 1 73 213118 17 1 10352 0 Desulfobacterales order 1 5733 0 family Desulfobacteraceae 35 213119 8 3 896 6 Desulfococcus genus 0 2545 1 1155 species Desulfococcus multivorans 0 1 897 1 181663 1384 Desulfococcus oleovorans species 0 genus 0 1018 1 28222 1018 Desulfobacula toluolica species 0 1 28223 0 Desulfobacterium genus 1 836 2295 2 1 1 2296 835 species Desulfobacterium autotrophicum 0 1299 0 genus 218207 1 1 259354 1299 Desulfatibacillum alkenivorans species 0 47 213121 8 1 4546 0 Desulfobulbaceae family genus 0 534 1 53318 65555 1 0 species Desulfocapsa sulfexigens 534 1 1863 0 Desulfobulbus genus 5 893 2 1858 Desulfobulbus sp. ORNL species 0 1 1986146 1 508 0 Desulfotalea genus 3 109168 2 84980 1 0 Desulfotalea psychrophila species 505 0 genus Desulfurivibrio 1 1594 427922 2 6 427923 1 1588 0 species Desulfurivibrio alkaliphilus 453227 4 22 0 order Desulfarculales 1 2909 0 Desulfarculaceae family 1 2887 453228 3 46 453229 2 34 0 Desulfarculus genus 1 2841 species Desulfarculus baarsii 0 2807 1 453230 0 Syntrophobacterales order 1 3247 213462 10 5 family Syntrophobacteraceae 0 1377 1 3 213465 33 29526 2 22 0 genus Syntrophobacter 1 1344 0 species Syntrophobacter fumaroxidans 1322 119484 1 213468 6 15 0 family Syntrophaceae 1 1865 43773 2 12 0 genus Syntrophus 1 606 594 Syntrophus aciditrophicus species 0 1 316277 750 genus 0 1 60892 750 Desulfobacca acetoxidans species 0 1 60893 1 494 0 genus Desulfomonile 5 2357 2 2358 1 0 species Desulfomonile tiedjei 489 Desulfuromonadales order 0 25210 1 24 69541 312 7861 1 family Desulfuromonadaceae 0 106 9 213421 3 890 35 genus Desulfuromonas 0 2880 1 1 1603606 1392 Desulfuromonas soudanensis species 0 1453 no rank 0 1 2614637 1823759 1 0 species Desulfuromonas sp. DDH964 1453 18 5 28 0 genus Pelobacter 1 4875 994 0 Pelobacter acetylenicus species 29542 1 953 0 no rank 2620299 1 1842532 1 953 0 species Pelobacter sp. SFB93 2006 0 Pelobacter propionicus species 29543 1 19 1 0 Pelobacter carbinolicus species 894 105 14 213422 17037 1 Geobacteraceae family 0 15007 1 Geobacter genus 0 327 11 28231 species Geobacter metallireducens 0 1262 1 28232 2 2627627 no rank 0 4063 1513 0 species Geobacter sp. M21 443144 1 0 species Geobacter sp. M18 2550 443143 1 0 Geobacter daltonii species 1007 1203471 1 1867 0 Geobacter anodireducens species 1340425 1 species Geobacter uraniireducens 0 1009 1 351604 225194 1 0 species Geobacter bemidjiensis 1531 1 313985 species Geobacter lovleyi 0 1276 35554 1 1230 0 species Geobacter sulfurreducens 1 345632 1435 species Geobacter pickeringii 0 2 392332 3 Geoalkalibacter genus 0 1925 1 0 species Geoalkalibacter subterraneus 1922 483547 1 213113 5 0 order 637 2 117942 5 1 637 0 family Desulfurellaceae 1 327 0 genus Desulfurella 33 33001 2 1 33002 294 species Desulfurella acetivorans 0 0 Hippea genus 1 308 84404 2 2 84405 1 306 0 Hippea maritima species 50425 1 class Epsilonproteobacteria 0 143 69 29547 4 235899 order 0 922 0 family 228 2795691 1 269258 1 228 0 genus 2624044 1 228 0 no rank 228 Nitratiruptor sp. SB155-2 species 0 1 387092 224467 3 1 0 family Nautiliaceae 1 694 693 1 Nautilia genus 0 3 2 191291 244787 1 0 Nautilia profundicola species 690 213849 64 1740 0 order Campylobacterales 1 49360 72293 13 0 family 3721 209 12 9 0 genus Helicobacter 1 3549 0 species Helicobacter himalayensis 171 1591088 1 217 1 259 0 Helicobacter mustelae species 109 no rank 0 1 2593540 109 0 species Helicobacter sp. MIT 01-6242 222136 1 451 0 Helicobacter cetorum species 138563 1 0 species Helicobacter cinaedi 202 213 1 32025 1 0 Helicobacter hepaticus species 188 212 1 201 0 species Helicobacter acinonychis 169 0 species Helicobacter typhlonius 76936 1 1 214 species Helicobacter felis 0 73 164 0 species Helicobacter bilis 37372 1 210 1 0 Helicobacter pylori species 1553 1 843 172 genus 0 0 species Wolinella succinogenes 172 844 1 1 40684 0 family Campylobacteraceae 3092 72294 41 0 Campylobacter genus 1 32467 194 26 534 species Campylobacter hominis 0 234 1 76517 species Campylobacter insulaenigrae 0 310 1 260714 1 197 5801 Campylobacter jejuni species 0 0 species Campylobacter subantarcticus 294 497724 1 824 1 479 0 species Campylobacter gracilis 1965231 1 0 Campylobacter pinnipediorum species 517 488546 1 0 Campylobacter peloridis species 313 196 1 784 0 Campylobacter fetus species 1244531 1 168 0 species Campylobacter iguaniorum 198 1 253 0 species Campylobacter hyointestinalis 251 0 species Campylobacter helveticus 28898 1 514 0 species Campylobacter sputorum 206 1 species Campylobacter concisus 0 516 1 199 1 201 Campylobacter lari species 0 990 392 0 species Campylobacter volucris 1031542 1 1 374106 Campylobacter cuniculorum species 0 202 287 0 Campylobacter curvus species 200 1 195 1 17109 0 Campylobacter coli species Campylobacter ureolyticus species 0 385 1 827 Campylobacter avium species 0 186 1 522485 4 2593542 no rank 0 1063 0 species Campylobacter sp. RM6137 191 1660073 1 283 species Campylobacter sp. RM16704 0 1 1500960 275 0 Campylobacter sp. RM8964 species 1660074 1 1660076 1 314 0 Campylobacter sp. RM12175 species Campylobacter lanienae species 0 885 1 75658 2866 0 no rank 2321108 5 1 2321207 694 no rank 0 694 0 species Arcobacter sp. L 944547 1 1 1444 0 genus Arcobacter 2 28196 3 28199 1 0 species Arcobacter nitrofigilis 546 896 0 Arcobacter butzleri species 28197 1 genus 0 728 1 2321187 1 1850254 Arcobacter sp. LPB0137 species 0 728 9 57665 18 genus Sulfurospirillum 0 2259 1 1 65553 species Sulfurospirillum deleyianum 0 242 1 194424 species Sulfurospirillum halorespirans 0 277 3 2618290 965 no rank 0 1 220622 279 Sulfurospirillum sp. JPD-1 species 0 1 1986224 286 Sulfurospirillum sp. SL2-1 species 0 1581011 1 0 species Sulfurospirillum sp. UCH001 400 1 44674 196 Sulfurospirillum barnesii species 0 214 Sulfurospirillum cavolei species 0 1 366522 Sulfurospirillum multivorans species 0 347 1 66821 2289 family 0 4 2771472 1210 1 genus Sulfurovum 0 6 3 265570 611 no rank 0 1 2646778 387093 1 0 Sulfurovum sp. NBC37-1 species 611 1 206403 593 Sulfurovum lithotrophicum species 0 1079 genus 0 1 269260 0 Nitratifractor salsuginis species 1079 269261 1 2771471 5 926 0 family 2 286130 2 genus Sulfuricurvum 0 420 1 418 0 species Sulfuricurvum kujiense 148813 1 506 1 genus Sulfurimonas 0 2 3 202746 1 202747 296 Sulfurimonas autotrophica species 0 0 species Sulfurimonas denitrificans 208 39766 1 1810 class 0 6 1807140 28 6 225057 1810 1 order Acidithiobacillales 0 0 family Acidithiobacillaceae 1 1782 225058 5 17 genus Acidithiobacillus 0 1765 1 4 119977 17 519 species Acidithiobacillus ferrooxidans 0 1 920 599 species Acidithiobacillus ferrivorans 0 1 160808 33059 1 630 0 Acidithiobacillus caldus species 21 200783 3457 phylum 0 21 187857 15 class Aquificae 0 3457 1 4 32069 18 1 2923 0 Aquificales order 90150 1 246 0 no rank genus 0 246 1 412592 412593 1 0 species Thermosulfidibacter takaii 246 1 64898 11 1 1634 0 Aquificaceae family 1 1101 0 Hydrogenobaculum genus 22 168657 6 2622382 5 1079 0 no rank 547143 1 0 species Hydrogenobaculum sp. 3684 221 221 0 species Hydrogenobaculum sp. SN 547146 1 221 0 species Hydrogenobaculum sp. SHO 547145 1 1 547144 221 species Hydrogenobaculum sp. HO 0 195 Hydrogenobaculum sp. Y04AAS1 species 0 1 380749 0 genus 202 2713 1 202 Aquifex aeolicus species 0 1 63363 0 genus 59 939 1 1 940 59 species Hydrogenobacter thermophilus 0 75905 2 0 genus 271 136094 1 70 0 Thermocrinis albus species 0 species Thermocrinis ruber 201 75906 1 6 224027 5 1 1039 0 Hydrogenothermaceae family 1 3 212790 606 1 Sulfurihydrogenibium genus 0 244 0 species Sulfurihydrogenibium azorense 309806 1 2619248 1 0 no rank 361 436114 1 0 Sulfurihydrogenibium sp. YO3AOP1 species 361 genus 0 427 1 182899 309805 1 0 Persephonella marina species 427 1485951 2 0 order 519 0 family 519 558314 2 64159 1 0 genus 339 64160 1 339 0 Desulfurobacterium thermolithotrophum species 171868 1 0 genus 180 Thermovibrio ammonificans species 0 180 1 228745 286 0 clade 2498710 4 4 67814 286 phylum 0 class Caldisericia 0 286 1 4 693071 2 284 0 order 693072 3 1 3 693073 284 1 Caldisericaceae family 0 Caldisericum genus 0 283 1 2 693074 1 species Caldisericum exile 0 282 1 693075 0 phylum 32484 203691 56 88 203692 56 1 32484 0 class Spirochaetia 0 order 2843 1643688 8 2843 1 Leptospiraceae family 0 3 8 170 418 0 genus 338321 1 species Turneriella parva 0 418 1 29510 2422 1 Leptospira genus 0 9 6 171 174 1 0 Leptospira borgpetersenii species 642 173 1 563 0 species Leptospira interrogans 451 Leptospira santarosai species 0 1 28183 486 0 species Leptospira alstonii 28452 1 1 172 species Leptospira biflexa 0 271 order Spirochaetales 0 24429 1 40 136 223 22007 1 family Spirochaetaceae 0 220 22 137 12 157 492 Treponema genus 0 14641 1 species Treponema pedis 0 541 1 409322 72 0 Treponema pallidum species 160 1 1 167 Treponema succinifaciens species 0 3129 53435 1 78 0 species Treponema paraluiscuniculi 1218 0 species Treponema denticola 158 1 88058 1 0 Treponema primitia species 1176 1 215591 869 Treponema caldarium species 0 1 2638727 2132 no rank 0 2132 0 Treponema sp. OMZ 838 species 1539298 1 81028 1 0 Treponema brennaborense species 1408 1206 Treponema azotonutricium species 0 1 150829 1 221027 2320 species Treponema putidum 0 2978 1 genus Sphaerochaeta 0 3 4 399320 1131707 1 0 species Sphaerochaeta pleomorpha 704 species Sphaerochaeta coccoides 0 934 1 273376 1337 0 species Sphaerochaeta globosa 1131703 1 807 0 genus 1911556 1 1 55206 Sediminispirochaeta smaragdinae species 0 807 146 3 31 0 Spirochaeta genus 1 2282 46355 1 0 Spirochaeta africana species 1005 0 Spirochaeta thermophila species 1246 154 1 0 genus 1079 1616789 1 1 1307761 species Salinispira pacifica 0 1079 1 2199 0 Borreliaceae family 1 1643685 17 genus Borrelia 0 1169 1 8 138 4 0 species Borrelia hermsii 143 140 1 141 Borrelia turicatae species 0 1 142 261 0 species Borrelia miyamotoi 47466 1 114 Borrelia anserina species 0 1 143 species Borrelia parkeri 0 168 1 141 species Borrelia recurrentis 0 154 1 44449 1 40834 184 species Borrelia duttonii 0 55 8 64895 1029 1 Borreliella genus 0 125 species Borreliella bavariensis 0 1 664662 74 0 species Borreliella bissettii 64897 1 1 139 168 Borreliella burgdorferi species 0 29519 1 244 0 Borreliella garinii species 29518 1 0 Borreliella afzelii species 157 1674146 1 103 0 species Borrelia mayonii 103 Borreliella valaisiana species 0 1 62088 1643686 7 6 0 order Brachyspirales 1 5124 143786 6 126 0 Brachyspiraceae family 1 5118 29521 5 157 0 Brachyspira genus 1 4992 1 159 952 species Brachyspira hyodysenteriae 0 1 52584 species Brachyspira pilosicoli 0 2103 1 84377 973 species Brachyspira intermedia 0 0 species Brachyspira murdochii 807 84378 1 1048 phylum 0 4 1930617 1 1048 0 Calditrichae class 2 1962850 4 1046 1 Calditrichales order 0 2 3 1962852 Calditrichaceae family 0 1044 1 2 1962854 8 1036 genus 0 1 187144 Caldithrix abyssi species 0 1036 1 187145 1059 phylum 0 5 200938 1059 1 Chrysiogenetes class 0 7 5 118001 11 189769 4 1 1052 0 order Chrysiogenales 189770 3 12 0 Chrysiogenaceae family 1 1041 0 genus Desulfurispirillum 1 1029 393029 2 19 Desulfurispirillum indicum species 0 1010 1 936456 0 phylum 855 68297 5 855 class 0 5 203486 855 1 order Dictyoglomales 0 4 5 203487 4 203488 2 family Dictyoglomaceae 0 851 1 13 3 1 0 genus Dictyoglomus 1 849 species Dictyoglomus thermophilum 0 498 1 14 Dictyoglomus turgidum species 0 350 1 513050 clade 0 13460440 1714 1783272 1 11254002 0 phylum Firmicutes 220 1239 723 6 5 1676648 1813 1 Limnochordia class 0 1 1807 0 Limnochordales order 33 1676649 4 15 3 1676650 1774 1 Limnochordaceae family 0 27 2 1676651 1759 1 genus Limnochorda 0 0 Limnochorda pilosa species 1732 1555112 1 1 11 526524 30796 1 class Erysipelotrichia 0 17 10 526525 30795 1 Erysipelotrichales order 0 144 128827 9 1 30778 0 family Erysipelotrichaceae 1 544447 no rank 0 16441 1834207 1 16441 0 Erysipelotrichaceae bacterium I46 species 1 2894 0 genus Erysipelothrix 53 1647 3 1514105 1 0 species Erysipelothrix larvae 1279 Erysipelothrix rhusiopathiae species 0 1562 1 1648 2 1729679 7 Faecalibaculum genus 0 4941 1 0 Faecalibaculum rodentium species 4934 1702221 1 191303 2 19 0 Turicibacter genus 1 6358 2638206 1 6339 0 no rank 1 1712675 6339 species Turicibacter sp. H121 0 2 33974 1289 no rank 0 Ndongobacter genus 0 1289 1 2 1930845 8 1 1871025 1281 species Ndongobacter massiliensis 0 18469 1 class Tissierellia 0 9 19 1737404 547 1737405 16 1 17498 0 Tissierellales order 3 2042895 3 Gottschalkiaceae family 0 964 1 2 2 1505664 961 1 genus Gottschalkia 0 0 species Gottschalkia acidurici 959 1556 1 0 family Peptoniphilaceae 1 15987 1570339 12 4657 6 2 150022 1291 1 Finegoldia genus 0 1260 1 0 species Finegoldia magna 1285 2 2 1161127 6308 1 Murdochiella genus 0 1852373 1 6306 0 species Murdochiella vaginalis Parvimonas genus 0 1228 1 2 543311 12 0 species Parvimonas micra 1216 33033 1 1 1696 0 Anaerococcus genus 2 165779 3 891 species Anaerococcus prevotii 0 1 33034 803 0 species Anaerococcus mediterraneensis 1870984 1 807 1 genus Peptoniphilus 0 2 2 162289 1 2637196 no rank 0 805 1 1912856 805 Peptoniphilus sp. ING2-D1G species 0 2 1737407 no rank 0 962 1 962 0 Ezakiella genus 12 1582879 2 1852374 1 0 species Ezakiella massiliensis 950 302 91061 431 1 509083 0 class Bacilli 1 260705 0 order Lactobacillales 2901 186826 165 5333 1 family Carnobacteriaceae 0 8 11 186828 16 5 2747 3065 1 Carnobacterium genus 0 2751 1 0 Carnobacterium maltaromaticum species 873 0 species Carnobacterium inhibens 694 147709 1 1482 no rank 0 2 257487 550 Carnobacterium sp. CP1 species 0 1 1564681 208596 1 0 species Carnobacterium sp. 17-4 932 7 1470540 3 1 1466 0 Jeotgalibaca genus 0 no rank 786 2621505 1 1 1903686 Jeotgalibaca sp. PTS2502 species 0 786 0 species Jeotgalibaca dankookensis 673 708126 1 1 794 0 genus Marinilactibacillus 2 191769 2 0 no rank 792 2632303 1 792 species Marinilactibacillus sp. 15R 0 1 1911586 no rank 0 647 1 263855 647 0 Lactobacillales bacterium species 1993866 1 58 33958 245 Lactobacillaceae family 0 40653 1 2767876 1 2363 0 genus 2363 species Lactobacillus amylophilus 0 1 1603 genus 0 1680 3 2767842 323 0 Lactobacillus paraplantarum species 60520 1 1 1590 948 Lactobacillus plantarum species 0 1 1589 Lactobacillus pentosus species 0 409 2 2767885 genus 0 1529 771 0 Lactobacillus curvatus species 28038 1 758 0 species Lactobacillus sakei 1599 1 3 2767886 genus 0 1308 614 species Lactobacillus brevis 0 1 1580 0 species Lactobacillus zymae 416 267363 1 1 637971 species Lactobacillus koreensis 0 278 0 Pediococcus genus 1 3148 1253 6 22 0 Pediococcus damnosus species 630 51663 1 391 0 species Pediococcus claussenii 187452 1 1 1255 883 species Pediococcus pentosaceus 0 358 Pediococcus inopinatus species 0 1 114090 0 species group 864 1670797 1 species Pediococcus acidilactici 0 864 1 1254 genus 0 556 1 2767892 0 species Lactobacillus paracollinoides 556 240427 1 0 genus 962 2767889 2 1 375175 Lactobacillus backii species 0 408 1610 1 554 0 species Lactobacillus coryniformis 2759736 3 0 genus 3293 757 0 Lactobacillus rhamnosus species 47715 1 1455 0 Lactobacillus casei species 1582 1 1597 1 1081 0 Lactobacillus paracasei species 2767893 3 0 genus 1205 1 1138822 Lactobacillus curieae species 0 430 490 Lactobacillus buchneri species 0 1 1581 152331 1 0 species Lactobacillus parabuchneri 285 2802 0 genus 2742598 3 Lactobacillus reuteri species 0 1052 1 1598 97478 1 0 species Lactobacillus mucosae 708 1613 1 0 species Lactobacillus fermentum 1042 genus 0 5272 4 2767887 89059 1 0 species Lactobacillus acidipiscis 493 1623 1 2370 0 Lactobacillus ruminis species 0 species Lactobacillus agilis 581 1601 1 1624 1 0 species Lactobacillus salivarius 1828 0 genus 306 2767890 1 306 Lactobacillus hokkaidonensis species 0 1 1193095 1110 16 1578 12411 1 genus Lactobacillus 0 1334 no rank 0 4 2620435 396 species Lactobacillus sp. wkB8 0 1 1545702 2099789 1 0 species Lactobacillus sp. CBA3606 346 2108362 1 301 0 species Lactobacillus sp. D1501 1 2099788 291 species Lactobacillus sp. CBA3605 0 1 267818 548 Lactobacillus kefiranofaciens species 0 438 0 Lactobacillus gallinarum species 52242 1 0 Lactobacillus jensenii species 365 109790 1 1 1596 1009 Lactobacillus gasseri species 0 1 1604 1530 species Lactobacillus amylovorus 0 33959 1 0 species Lactobacillus johnsonii 1583 1 1587 species Lactobacillus helveticus 0 762 1 1579 Lactobacillus acidophilus species 0 517 385 Lactobacillus amylolyticus species 0 1 83683 2325 species Lactobacillus delbrueckii 0 1 1584 Lactobacillus acetotolerans species 0 505 1 1600 2 2767881 539 genus 0 1 1625 304 Lactobacillus sanfranciscensis species 0 53444 1 235 0 species Lactobacillus lindneri genus 0 210 1 2767877 210 Lactobacillus kunkeei species 0 1 148814 2824 genus 0 6 2767879 0 Lactobacillus alimentarius species 393 1602 1 1 1074467 species Lactobacillus heilongjiangensis 0 514 439 species Lactobacillus ginsenosidimutans 0 1 1007676 species Lactobacillus farciminis 0 484 1 1612 515 0 Lactobacillus crustorum species 392416 1 479 species Lactobacillus allii 0 1 1847728 81850 18 9 0 family Leuconostocaceae 1 5341 1 3098 0 Leuconostoc genus 39 1243 9 1252 1 0 Leuconostoc carnosum species 323 453 Leuconostoc kimchii species 0 1 136609 species Leuconostoc gelidum 0 487 1 1244 1 255248 256 species Leuconostoc garlicum 0 Leuconostoc lactis species 0 252 1 1246 0 species Leuconostoc citreum 296 33964 1 659 Leuconostoc mesenteroides species 0 1 1245 2685106 1 0 no rank 333 0 Leuconostoc sp. C2 species 333 979982 1 1 1801 0 genus Weissella 14 46255 6 137591 1 394 0 species Weissella cibaria 342 Weissella jogaejeotgali species 0 1 1631871 1249 1 406 0 Weissella paramesenteroides species species Weissella koreensis 0 331 1 165096 759620 1 314 0 Weissella ceti species 2 46254 3 Oenococcus genus 0 433 1 1 1247 430 species Oenococcus oeni 0 19 81852 88 Enterococcaceae family 0 39933 1 12 1350 1611 Enterococcus genus 0 36728 1 species Enterococcus faecium 0 21723 1 1352 1719 0 species Enterococcus durans 53345 1 species Enterococcus wangshanyuanii 0 968 1 2005703 700 0 species Enterococcus thailandicus 417368 1 899 Enterococcus mundtii species 0 1 53346 0 species Enterococcus casseliflavus 665 37734 1 1 1354 1192 species Enterococcus hirae 0 3 2608891 2009 no rank 0 0 species Enterococcus sp. CR-Ec1 540 2057791 1 1 2060306 species Enterococcus sp. FDAARGOS_163 0 638 1 2060307 species Enterococcus sp. FDAARGOS_375 0 831 5242 0 species Enterococcus faecalis 1351 1 genus Tetragenococcus 0 1148 1 2 51668 1 1 51669 Tetragenococcus halophilus species 0 1147 Vagococcus genus 0 1375 1 3 2737 1 633807 1 511 0 Vagococcus penaei species 1 519472 863 species Vagococcus teuberi 0 594 0 genus 33969 1 0 species Melissococcus plutonius 594 33970 1 161256 1 Streptococcaceae family 0 3254 49 1300 0 genus Lactococcus 1 5754 1357 5 10 1364 1 0 Lactococcus piscium species 861 1 1366 396 species Lactococcus raffinolactis 0 1 1363 1031 species Lactococcus garvieae 0 3456 Lactococcus lactis species 0 1 1358 2888 1301 43 1 152248 0 genus Streptococcus 1825069 1 0 species Streptococcus marmotae 604 1673 0 species Streptococcus pneumoniae 1313 1 1815 0 species group 119603 2 1 1334 633 species Streptococcus dysgalactiae 0 1336 1 0 species Streptococcus equi 1182 1 1308 species Streptococcus thermophilus 0 18877 529 0 species Streptococcus macedonicus 59310 1 197614 1 3612 0 species Streptococcus pasteurianus 0 Streptococcus pluranimalium species 389 82348 1 1309 1 739 0 Streptococcus mutans species 1 1346 Streptococcus iniae species 0 1314 2134 species Streptococcus pyogenes 0 1 1314 1305 1 0 species Streptococcus sanguinis 764 28037 1 2296 0 species Streptococcus mitis 1307 1 0 Streptococcus suis species 15251 257758 1 0 Streptococcus pseudopneumoniae species 699 1 1349 Streptococcus uberis species 0 583 1 102684 5703 Streptococcus infantarius species 0 451 Streptococcus himalayensis species 0 1 1888195 472 Streptococcus halotolerans species 0 1 1814128 1 1311 13026 Streptococcus agalactiae species 0 1 1304 14203 species Streptococcus salivarius 0 1 1348 species Streptococcus parauberis 0 819 10142 0 no rank 2608887 7 1 1759399 1045 Streptococcus sp. A12 species 0 1 1902136 Streptococcus sp. NPS 308 species 0 508 0 species Streptococcus sp. 'group B' 737 1319 1 Streptococcus sp. oral taxon 431 species 0 533 1 712633 0 species Streptococcus sp. I-P16 1994 1156433 1 2111 species Streptococcus sp. I-G2 0 1 1156431 1 1839799 3214 species Streptococcus sp. FDAARGOS_192 0 1 1318 Streptococcus parasanguinis species 0 3196 1335 1 1963 0 Streptococcus equinus species Streptococcus gallolyticus species 0 1553 1 315405 Streptococcus oralis species 0 1635 1 1303 species group 0 34413 3 671232 12282 Streptococcus constellatus species 0 1 76860 19791 species Streptococcus anginosus 0 1 1328 1338 1 0 Streptococcus intermedius species 2340 1 150055 Streptococcus lutetiensis species 0 5091 1811193 1 748 0 Streptococcus pantholopis species 400065 1 0 Streptococcus merionis species 533 732 0 Streptococcus cristatus species 45634 1 species Streptococcus gordonii 0 1676 1 1302 1 1326 species Streptococcus acidominimus 0 1725 186827 8 12 0 Aerococcaceae family 1 4641 266 1375 7 1 4629 0 Aerococcus genus 1 87541 Aerococcus christensenii species 0 621 744 Aerococcus viridans species 0 1 1377 1 128944 471 species Aerococcus urinaehominis 0 119206 1 0 Aerococcus sanguinicola species 823 0 Aerococcus urinae species 800 1376 1 51665 1 904 0 species Aerococcus urinaeequi 737 265 1385 248076 1 order Bacillales 0 28423 1 family Staphylococcaceae 0 1201 41 90964 0 Staphylococcus genus 1 23627 1279 33 416 728 species Staphylococcus simiae 0 1 308354 species Staphylococcus hyicus 0 503 1 1284 1292 1 559 0 Staphylococcus warneri species 777 species Staphylococcus simulans 0 1 1286 1 985002 species Staphylococcus argenteus 0 719 Staphylococcus nepalensis species 0 627 1 214473 species Staphylococcus pseudintermedius 0 968 1 283734 0 no rank 647 91994 1 647 0 species Staphylococcus sp. AntiMn-1 1715860 1 0 species Staphylococcus pettenkoferi 365 170573 1 523 0 species Staphylococcus kloosii 29384 1 1 61015 species Staphylococcus succinus 0 634 1 28035 Staphylococcus lugdunensis species 0 471 1283 1 0 species Staphylococcus haemolyticus 711 707 Staphylococcus schleiferi species 0 1 1295 species Staphylococcus capitis 0 535 1 29388 673 species Staphylococcus felis 0 1 46127 1 1290 species Staphylococcus hominis 0 562 1280 1 2360 0 Staphylococcus aureus species 643214 1 635 0 Staphylococcus stepanovicii species 1 70258 species Staphylococcus piscifermentans 0 604 species Staphylococcus equorum 0 702 1 246432 1 1281 550 species Staphylococcus carnosus 0 0 species Staphylococcus xylosus 1089 1288 1 155085 1 388 0 species Staphylococcus lutrae 0 Staphylococcus sciuri species 963 1296 1 813 0 species Staphylococcus cohnii 29382 1 1 70255 species Staphylococcus condimenti 0 600 1 45972 1248 species Staphylococcus pasteuri 0 1 1282 species Staphylococcus epidermidis 0 1023 1 985762 species Staphylococcus agnetis 0 590 0 Staphylococcus saprophyticus species 568 29385 1 1 1294 species Staphylococcus muscae 0 369 1 2123 0 genus Macrococcus 15 69965 4 674 no rank 0 1 2619255 674 0 species Macrococcus sp. IME1552 1898474 1 species Macrococcus canis 0 592 1 1855823 69966 1 842 0 species Macrococcus caseolyticus 2 45669 2 1 1025 0 Salinicoccus genus 1023 Salinicoccus halodurans species 0 1 407035 genus 0 447 1 2005363 Auricoccus indicus species 0 447 1 1849491 1 1107 0 Thermoactinomycetaceae family 9 186824 4 40 1677050 2 1 1068 0 Novibacillus genus 1028 species Novibacillus thermophilus 0 1 1471761 0 genus Laceyella 30 292635 1 0 Planococcaceae family 1 15699 186818 25 43 21 5 1569 4399 1 Sporosarcina genus 0 1 1571 1910 species Sporosarcina ureae 0 520 Sporosarcina psychrophila species 0 1 1476 1948 no rank 0 2 2647733 867 species Sporosarcina sp. P37 0 1 1930546 1081 Sporosarcina sp. P33 species 0 1 1930764 2 157226 2 genus Jeotgalibacillus 0 841 1 839 0 species Jeotgalibacillus malaysiensis 1508404 1 91 1372 12 1 7127 0 Planococcus genus 1 1374 Planococcus kocurii species 0 474 1 161360 Planococcus antarcticus species 0 415 0 species Planococcus rifietoensis 780 200991 1 1179 no rank 0 2 2662419 422 0 species Planococcus sp. PAMC 21323 1526927 1 0 species Planococcus sp. MB-3u-03 757 2058136 1 Planococcus plakortidis species 0 735 1 1038856 1 1598147 species Planococcus faecalis 0 478 1 414778 Planococcus donghaensis species 0 652 415 0 Planococcus sp. L10.15 species 1302659 1 1 192421 1430 species Planococcus maritimus 0 1215089 1 478 0 species Planococcus halocryophilus genus 0 625 1 648802 241244 1 0 species Rummeliibacillus stabekisii 625 3 648800 13 Solibacillus genus 0 2103 1 2637870 1 0 no rank 740 0 Solibacillus sp. R5-41 species 740 2048654 1 76853 1 1350 0 species Solibacillus silvestris 1649 1 561 0 genus 561 no rank 0 1 2644826 1 1750719 species Kurthia sp. 11kri321 0 561 30 186820 9 1 7306 0 Listeriaceae family 53 1637 6 1 6629 0 Listeria genus 0 species Listeria welshimeri 867 1643 1 1640 1 897 0 Listeria seeligeri species species Listeria monocytogenes 0 2820 1 1639 1287 0 species Listeria ivanovii 1638 1 705 species Listeria innocua 0 1 1642 0 Brochothrix genus 1 647 2755 2 3 2756 1 0 species Brochothrix thermosphacta 644 1 108031 0 Bacillaceae family 233 186817 119 3 2 182709 1534 1 genus Oceanobacillus 0 1 182710 1531 Oceanobacillus iheyensis species 0 2 175304 2 Lentibacillus genus 0 1039 1 1037 Lentibacillus amyloliquefaciens species 0 1 1472767 1329200 3 11 0 Fictibacillus genus 1 1681 species Fictibacillus phosphorivorans 0 714 1 1221500 0 species Fictibacillus arsenicus 956 255247 1 69965 1 Bacillus genus 0 2838 58 1386 1 33932 792 species Bacillus cohnii 0 species group 0 22727 10 86661 1 1428 Bacillus thuringiensis species 0 6731 Bacillus anthracis species 0 738 1 1392 2805 species Bacillus mycoides 0 1 1405 0 Bacillus cereus species 7373 1396 1 580165 1 979 0 species Bacillus cytotoxicus 1 658666 799 Bacillus bombysepticus species 0 no rank 0 2556 3 2750818 0 species Bacillus sp. FDAARGOS_235 981 1839798 1 1892404 1 0 species Bacillus sp. ABP14 755 820 0 Bacillus sp. HBCD-sjtu species 2053832 1 746 0 Bacillus toyonensis species 155322 1 783 species group 0 1 1792192 0 Bacillus altitudinis species 783 293387 1 species Bacillus aryabhattai 0 718 1 412384 2420 Bacillus coagulans species 0 1 1398 9693 no rank 0 19 185979 0 species Bacillus sp. Lzh-5 85 2049935 1 species Bacillus sp. SJ-10 0 392 1 563169 671 0 Bacillus sp. OxB-1 species 98228 1 1565991 1 846 0 Bacillus sp. X1(2014) species 1856406 1 0 species Bacillus sp. H15-1 707 1 1941347 425 Bacillus sp. 275 species 0 1 666686 856 Bacillus sp. 1NLA3E species 0 2009331 1 0 Bacillus sp. MD-5 species 221 672 species Bacillus sp. FJAT-14266 0 1 1837130 156 Bacillus sp. (in: Bacteria) species 0 1 1409 1 1827146 887 species Bacillus sp. IHB B 7164 0 0 species Bacillus sp. YP1 357 1574141 1 651 0 Bacillus sp. SDLI1 species 1774743 1 1 1446792 442 species Bacillus sp. Pc3 0 0 species Bacillus sp. BH072 277 1570330 1 2026248 1 0 Bacillus sp. 1s-1 species 706 1 1127744 Bacillus sp. JS species 0 297 0 Bacillus sp. WP8 species 853 756828 1 1628753 1 0 Bacillus sp. LM 4-2 species 192 561879 1 0 species Bacillus safensis 1424 13498 0 species group 653685 9 4206 species subgroup 0 3 1938374 1390 1 1997 0 species Bacillus amyloliquefaciens 659243 1 659 0 Bacillus siamensis species 1550 0 species Bacillus velezensis 492670 1 species Bacillus paralicheniformis 0 1129 1 1648923 1127 0 Bacillus sonorensis species 119858 1 1452 1 0 Bacillus atrophaeus species 1168 0 species Bacillus subtilis 4606 1423 1 72361 1 0 species Bacillus vallismortis 118 1 1402 1144 species Bacillus licheniformis 0 324767 1 1070 0 Bacillus infantis species 166 species Bacillus gibsonii 0 1 79881 715 0 species Bacillus beveridgei 632773 1 1 1413 species Bacillus cellulosilyticus 0 897 1471 1 804 0 species Bacillus methanolicus 1479 1 862 0 Bacillus smithii species 1147 0 species Bacillus glycinifermentans 1664069 1 917 species Bacillus horikoshii 0 1 79883 species Bacillus pumilus 0 2762 1 1408 567 Bacillus xiamenensis species 0 1 1178537 86664 1 0 Bacillus flexus species 752 1547283 1 0 Bacillus weihaiensis species 911 2120 0 species Bacillus megaterium 1404 1 1 135735 1382 species Bacillus endophyticus 0 849 1 genus Parageobacillus 0 4 2 1906945 0 species Parageobacillus thermoglucosidasius 845 1426 1 32 7 84406 4772 1 Virgibacillus genus 0 2017483 1 0 species Virgibacillus phasianinus 730 1 163877 790 species Virgibacillus necropolis 0 species Virgibacillus pantothenticus 0 799 1 1473 2620237 2 0 no rank 1684 0 Virgibacillus sp. 6R species 1080 1911587 1 604 species Virgibacillus sp. SK37 0 1 403957 1 1482 737 Virgibacillus halodenitrificans species 0 0 genus 4021 2675234 5 79880 1 1228 0 Bacillus clausii species Bacillus halodurans species 0 662 1 86665 631 species Bacillus pseudofirmus 0 1 79885 1 199441 Bacillus krulwichiae species 0 721 779 0 species Bacillus lehensis 300825 1 400634 5 53 0 genus Lysinibacillus 1 4194 1421 1 0 species Lysinibacillus sphaericus 1990 1145276 1 650 0 species Lysinibacillus varians 0 species Lysinibacillus fusiformis 763 28031 1 0 no rank 738 2636778 1 2072025 1 738 0 Lysinibacillus sp. YS11 species 2675230 2 0 genus 1766 1060 species Bacillus oceanisediminis 0 1 665099 1 859143 species Bacillus kochii 0 706 0 Terribacillus genus 1 871 459532 2 3 868 Terribacillus aidingensis species 0 1 586416 1 707 0 Aeribacillus genus 3 1055323 2 704 0 species Aeribacillus pallidus 33936 1 351195 1 594 0 genus 594 0 species Salimicrobium jeotgali 1230341 1 genus 0 1514 2 45667 0 species Halobacillus mangrovi 849 402384 1 1570 1 0 Halobacillus halophilus species 665 29331 2 1 0 genus Amphibacillus 1 917 1449 1 916 0 species Amphibacillus xylanus 2500 genus 0 2 2675229 species Bacillus simplex 0 1666 1 1478 264697 1 834 0 species Bacillus muralis 1 3273 0 genus Anoxybacillus 15 150247 6 no rank 0 1295 2 2639704 727 0 species Anoxybacillus sp. B2M1 1490052 1 1490057 1 568 0 species Anoxybacillus sp. B7M1 198467 1 504 0 Anoxybacillus gonensis species 437 0 species Anoxybacillus amylolyticus 294699 1 1 33934 1022 species Anoxybacillus flavithermus 0 129337 15 595 0 genus Geobacillus 1 7601 2642459 6 0 no rank 2394 1 550542 275 species Geobacillus sp. Y412MC52 0 471223 1 474 0 species Geobacillus sp. WCH70 1 1233873 216 species Geobacillus sp. GHH01 0 0 species Geobacillus sp. C56-T3 373 691437 1 0 species Geobacillus sp. Y4.1MC1 773 581103 1 Geobacillus sp. Y412MC61 species 0 283 1 544556 2329 species group 0 4 1505648 506 species Geobacillus lituanicus 0 1 169283 1 33938 species Geobacillus thermocatenulatus 0 475 282 species Geobacillus kaustophilus 0 1 1462 1 33941 species Geobacillus thermoleovorans 0 1066 709 0 species Geobacillus stearothermophilus 1422 1 1 1921421 species Geobacillus genomosp. 3 0 461 597 Geobacillus thermodenitrificans species 0 1 33940 1 129338 species Geobacillus subterraneus 0 516 4355 no rank 0 9 539002 3042 0 no rank 539742 7 7 33986 55 Exiguobacterium genus 0 3042 1 569 0 Exiguobacterium antarcticum species 132920 1 4 2644629 1822 no rank 0 Exiguobacterium sp. ZWU0009 species 0 501 1 1224749 495 0 Exiguobacterium sp. AT1b species 360911 1 1399115 1 0 Exiguobacterium sp. MH3 species 311 1849031 1 515 0 species Exiguobacterium sp. U13-1 species Exiguobacterium sibiricum 0 596 1 332410 539738 2 0 no rank 1313 1313 1 Gemella genus 0 1 2 1378 1 2624949 no rank 0 1312 1785995 1 1312 0 Gemella sp. oral taxon 928 species 0 Paenibacillaceae family 1 75150 186822 46 209 2 76632 6 genus Thermobacillus 0 2212 1 2206 0 species Thermobacillus composti 377615 1 1 66993 0 genus Paenibacillus 534 44249 36 0 species Paenibacillus stellifer 2484 169760 1 no rank 0 23824 13 185978 1695218 1 1530 0 Paenibacillus sp. 32O-W species 1 1536774 Paenibacillus sp. FSL H7-0357 species 0 2385 1 1536772 2399 Paenibacillus sp. FSL R7-0273 species 0 species Paenibacillus sp. IHBB 10380 0 755 1 1566358 1 1536771 2614 Paenibacillus sp. FSL R5-0912 species 0 2624 Paenibacillus sp. FSL P4-0081 species 0 1 1536769 1 1536775 species Paenibacillus sp. FSL H7-0737 0 1495 1173 Paenibacillus sp. FSL R5-0345 species 0 1 1536770 1 1536773 species Paenibacillus sp. FSL R7-0331 0 2833 species Paenibacillus sp. JDR-2 0 2082 1 324057 2069255 1 1006 0 Paenibacillus sp. lzh-N1 species 1 1870819 species Paenibacillus sp. BIHB4019 0 1329 481743 1 1599 0 species Paenibacillus sp. Y412MC10 1467 0 Paenibacillus odorifer species 189426 1 773 0 Paenibacillus crassostreae species 1763538 1 1174 species Paenibacillus terrae 0 1 159743 1 1178515 species Paenibacillus swuensis 0 1054 1 365617 Paenibacillus sabinae species 0 1855 1 1870820 Paenibacillus ihbetae species 0 2060 189425 1 2225 0 Paenibacillus graminis species 1 1126833 1648 species Paenibacillus beijingensis 0 1616788 1 0 species Paenibacillus bovis 1888 1 44251 2793 Paenibacillus durus species 0 1462996 1 1939 0 species Paenibacillus yonginensis 1 160799 2795 Paenibacillus borealis species 0 1464 1 0 species Paenibacillus larvae 1207 59893 1 0 Paenibacillus peoriae species 1390 species group 0 2318 1 2044880 0 species Paenibacillus riograndensis 2318 483937 1 940 Paenibacillus kribbensis species 0 1 172713 1620 0 Paenibacillus xylanexedens species 528191 1 1406 1 0 species Paenibacillus polymyxa 4213 414771 1 0 Paenibacillus donghaensis species 2482 3093 0 Paenibacillus mucilaginosus species 61624 1 1217 0 Paenibacillus naphthalenovorans species 162209 1 30 55080 4 1 3609 0 Brevibacillus genus 877 Brevibacillus formosus species 0 1 54913 1393 Brevibacillus laterosporus species 0 1 1465 1 1393 species Brevibacillus brevis 0 1309 3 85151 2127 no rank 0 1 2127 0 Aneurinibacillus genus 17 55079 3 1 2642329 999 no rank 0 1450761 1 999 0 Aneurinibacillus sp. XH2 species 0 species Aneurinibacillus soli 1111 1500254 1 186823 9 46 0 Alicyclobacillaceae family 1 6473 0 Alicyclobacillus genus 1 1881 29330 2 39 1 405212 1842 Alicyclobacillus acidocaldarius species 0 3 432330 13 genus Tumebacillus 0 3251 1 1903704 1 1931 0 species Tumebacillus avium 1214604 1 1307 0 Tumebacillus algifaecis species genus Kyrpidia 0 1295 1 3 1129704 48 Kyrpidia tusciae species 0 704 1 33943 1 2055160 543 species Kyrpidia sp. EA-1 0 2 186821 1 Sporolactobacillaceae family 0 795 1 663587 1 794 0 no rank 794 0 [Bacillus] selenitireducens species 85683 1 57 909932 31 1 70064 0 class Negativicutes 0 Veillonellales order 1 24132 1843489 11 1108 1030 31977 10 1 23024 0 family Veillonellaceae 29465 3 11 0 genus Veillonella 1 4456 species Veillonella parvula 0 2817 1 29466 1628 Veillonella rodentium species 0 1 248315 9 39948 2 1 5034 0 genus Dialister 1 39950 Dialister pneumosintes species 0 5025 0 Negativicoccus genus 1 2139 909928 2 12 1702287 1 2127 0 species Negativicoccus massiliensis 906 2 456 0 Megasphaera genus 1 10365 9909 0 species Megasphaera elsdenii 907 1 Selenomonadales order 0 22050 1 14 909929 116 100 1843491 9 1 18432 0 Selenomonadaceae family 1 2169 0 Megamonas genus 1 158846 2 0 Megamonas hypermegale species 2168 158847 1 141 970 6 1 16163 0 genus Selenomonas 971 1 5255 0 species Selenomonas ruminantium no rank 0 7608 3 2637378 2583 0 Selenomonas sp. oral taxon 478 species 712538 1 1884263 1 0 species Selenomonas sp. oral taxon 920 2352 713030 1 0 Selenomonas sp. oral taxon 136 species 2673 1 69823 3159 species Selenomonas sputigena 0 family Sporomusaceae 0 3502 1 4 1843490 7 0 Pelosinus genus 1 3495 365348 3 9 0 no rank 1869 2629460 1 species Pelosinus sp. UFO1 0 1869 1 484770 1617 Pelosinus fermentans species 0 1 365349 5 1843488 27 Acidaminococcales order 0 23825 1 1 23798 0 family Acidaminococcaceae 30 909930 4 3 904 50 Acidaminococcus genus 0 23768 1 1 187327 16510 species Acidaminococcus intestini 0 905 1 7208 0 species Acidaminococcus fermentans 222 186801 274 Clostridia class 0 10621556 1 3524 1 Halanaerobiales order 0 4 11 53433 1 2162 0 Halanaerobiaceae family 3 972 6 0 Halothermothrix genus 1 779 32636 2 2 species Halothermothrix orenii 0 777 1 31909 1 1380 0 Halanaerobium genus 3 2330 3 680 species Halanaerobium hydrogeniformans 0 1 656519 0 species Halanaerobium praevalens 697 2331 1 4 53434 9 family Halobacteroidaceae 0 1358 1 1 42417 2 1 584 0 genus Halobacteroides 1 42422 Halobacteroides halobius species 0 583 28186 1 765 0 genus 765 0 Acetohalobium arabaticum species 28187 1 3 2770089 order 0 1803 813 0 family 2770092 1 1 499228 813 genus 0 813 species Tepidanaerobacter acetatoxydans 0 1 499229 2 2770093 990 family 0 14 2 291988 990 1 Thermosediminibacter genus 0 species Thermosediminibacter oceani 0 976 1 291990 485256 3 6 0 order Natranaerobiales 1 687 681 0 family 485255 2 genus Natranaerobius 0 681 1 2 375928 10 0 species Natranaerobius thermophilus 671 375929 1 165 186802 13385 order Clostridiales 0 10594570 1 Symbiobacteriaceae family 0 3022 1 3 543349 4 1 3018 0 Symbiobacterium genus 17 2733 2 1 2734 species Symbiobacterium thermophilum 0 3001 10 538999 197782 no rank 0 543314 4 9 0 Clostridiales Family XIII. Incertae Sedis family 1 3629 Mogibacterium genus 0 1689 1 2 86331 3 0 Mogibacterium diversum species 1686 114527 1 143393 1 0 [Eubacterium] sulci species 1931 123296 genus 0 1 2717089 123296 species Mordavella sp. Marseille-P3756 0 1 2086584 2113 1 family Clostridiales Family XVII. Incertae Sedis 0 2 3 539000 15 2 73918 2111 1 Thermaerobacter genus 0 2096 0 species Thermaerobacter marianensis 73919 1 1 68744 0 genus Intestinimonas 224 1392389 2 1 1297617 species Intestinimonas butyriciproducens 0 68520 258 31979 41 1 118415 0 Clostridiaceae family 800 1485 30 1 110437 0 genus Clostridium 1 1548 2362 Clostridium scatologenes species 0 1593 Clostridium acetobutylicum species 0 1 1488 1 84022 1345 Clostridium aceticum species 0 36745 1 0 species Clostridium saccharoperbutylacetonicum 4183 2652 Clostridium carboxidivorans species 0 1 217159 1494 1 1693 0 species Clostridium cochlearium 0 species Clostridium autoethanogenum 1603 84023 1 0 species Clostridium tetani 2896 1513 1 1610 Clostridium ljungdahlii species 0 1 1538 1 1493 Clostridium cellulovorans species 0 2778 Clostridium baratii species 0 3913 1 1561 0 Clostridium saccharobutylicum species 2924 169679 1 5402 0 species Clostridium beijerinckii 1520 1 1501 1 0 species Clostridium pasteurianum 3508 2143 species Clostridium chauvoei 0 1 46867 11500 Clostridium botulinum species 0 1 1491 1497 1 0 Clostridium formicaceticum species 1387 Clostridium estertheticum species 0 1803 1 238834 Clostridium tyrobutyricum species 0 1575 1 1519 2150 0 species Clostridium argentinense 29341 1 1 1542 1425 species Clostridium novyi 0 1509 1 1375 0 species Clostridium sporogenes 1492 1 5345 0 species Clostridium butyricum 1502 1 0 species Clostridium perfringens 6454 1 1216932 2027 species Clostridium bornimense 0 species Clostridium taeniosporum 0 2292 1 394958 0 no rank 28538 2614128 2 Clostridium sp. BNL1100 species 0 3116 1 755731 1042156 1 25422 0 species Clostridium sp. SY8519 1534 1 0 species Clostridium kluyveri 3161 Candidatus Arthromitus genus 0 2359 1 4 49082 14 no rank 0 2345 3 2638829 1 1508644 750 Candidatus Arthromitus sp. SFB-mouse-NL species 0 49118 1 764 0 species Candidatus Arthromitus sp. SFB-mouse 0 Candidatus Arthromitus sp. SFB-rat-Yit species 831 1041504 1 1981033 1 0 Mordavella genus 291 0 genus Alkaliphilus 1 2270 114627 3 6 1186 Alkaliphilus metalliredigens species 0 1 208226 1 461876 species Alkaliphilus oremlandii 0 1078 Geosporobacter genus 0 2800 1 2 390805 6 1424294 1 0 Geosporobacter ferrireducens species 2794 384 13 541000 3226709 1 Ruminococcaceae family 0 0 no rank 2153 552397 1 29343 1 2153 0 species [Clostridium] cellulosi 865490 1 genus Ruminococcus 0 68 3 1263 0 Ruminococcus albus species 7588 1264 1 1 1160721 species Ruminococcus bicirculans 0 857834 1 1890281 8 Herbivorax genus 0 2 253238 60 genus Ethanoligenens 0 8041 1 0 Ethanoligenens harbinense species 7981 253239 1 2305133 1 6661 0 no rank 6661 species Ruminococcaceae bacterium CPB6 0 1 1572656 65 2 946234 149935 1 genus Flavonifractor 0 292800 1 149870 0 species Flavonifractor plautii 2194037 1 Faecalibacterium genus 0 843 2 216851 1 853 species Faecalibacterium prausnitzii 0 2193194 1 3264 0 family Heliobacteriaceae 7 31984 3 3257 1 genus Heliobacterium 0 24 2 2697 Heliobacterium modesticaldum species 0 3233 1 35701 2 68298 5 1 1076 0 Syntrophomonadaceae family genus Syntrophothermus 0 489 1 2 129001 1 species Syntrophothermus lipocalidus 0 488 1 86170 1 585 0 Syntrophomonas genus 3 862 2 1 863 582 species Syntrophomonas wolfei 0 37843 0 family 2304686 12 1 1019 0 genus Fastidiosipila 6 236752 2 1013 0 species Fastidiosipila sanguinis 236753 1 no rank 0 20905 1 2305130 Ruminiclostridium sp. KB18 species 0 20905 1 1834198 2190 genus 0 1 2304691 2190 0 [Clostridium] stercorarium species 1510 1 3 2 1637257 3148 1 genus Mageeibacillus 0 1 884684 Mageeibacillus indolicus species 0 3145 1 2304693 2447 genus 0 1 84032 species [Clostridium] thermosuccinogenes 0 2447 3 2304692 5214 genus 0 1 288965 1971 species [Clostridium] clariflavum 0 1 1515 1865 species Ruminiclostridium thermocellum 0 1 1677857 Herbivorax saccincola species 0 1378 2 1508657 251 genus Ruminiclostridium 0 2920 1 1521 1 2669 0 [Clostridium] cellulolyticum species 28560 1 Oscillospiraceae family 0 6 3 216572 0 Oscillibacter genus 1 28554 459786 2 28 0 Oscillibacter valericigenes species 28526 351091 1 0 family Lachnospiraceae 1 6739312 186803 26 1576 0 Butyrivibrio genus 1 27231 830 3 23 43305 1 0 Butyrivibrio proteoclasticus species 13671 0 Butyrivibrio hungatei species 13537 185008 1 1 28050 243719 genus 0 243719 0 [Eubacterium] eligens species 39485 1 1 1164924 0 Roseburia genus 51 841 2 0 Roseburia hominis species 1164873 301301 1 1 125508 0 Blautia genus 140 572511 3 1322 1 71550 0 species Blautia hansenii 1 2648079 no rank 0 53818 53818 0 Blautia sp. YL58 species 1796616 1 0 genus 37967 2719231 1 37967 species [Clostridium] saccharolyticum 0 1 84030 186928 2 0 no rank 4351542 18875 species Lachnospiraceae bacterium oral taxon 500 0 1 712991 0 species [Eubacterium] rectale 4332667 39491 1 2569097 1 134640 0 genus 39488 1 0 [Eubacterium] hallii species 134640 genus Lachnoclostridium 0 141982 1 4 1506553 603 0 species Lachnoclostridium phocaeense 65776 1871021 1 1 66219 Lachnoclostridium phytofermentans species 0 9757 65846 no rank 0 1 2608895 Lachnoclostridium sp. YL32 species 0 65846 1 1834196 4471 0 genus 698776 1 0 species Cellulosilyticum lentocellum 4471 29360 1 5 2 2039240 4717 1 genus Anaerotignum 0 28446 1 4712 0 species Anaerotignum propionicum 1663717 2 12 0 genus Herbinix 1 7559 7547 Herbinix luporum species 0 1 1679721 0 genus 164474 2719313 1 208479 1 164474 0 [Clostridium] bolteae species Anaerostipes genus 0 329002 1 2 207244 122 328880 0 species Anaerostipes hadrus 649756 1 26292 1 Christensenellaceae family 0 40 3 990719 990721 2 190 0 genus Christensenella 1 26252 1805714 1 26062 0 Christensenella massiliensis species 28 186807 69 Peptococcaceae family 0 27787 1 1 5113 0 genus Dehalobacter 44 56112 4 0 no rank 3531 2635733 2 1131462 1 1715 0 Dehalobacter sp. CF species 1816 Dehalobacter sp. DCA species 0 1 1147129 1 55583 1538 Dehalobacter restrictus species 0 988 0 genus 2282742 1 988 0 Desulfotomaculum acetoxidans species 58138 1 genus Candidatus Desulforudis 0 1128 1 2 471826 12 1 471827 species Candidatus Desulforudis audaxviator 0 1116 1 2413 0 Dehalobacterium genus 4 51514 2 2409 Dehalobacterium formicoaceticum species 0 1 51515 2282740 1 0 genus 1448 1 102134 species Desulfotomaculum gibsoniae 0 1448 36853 5 62 0 Desulfitobacterium genus 1 6535 Desulfitobacterium hafniense species 0 2912 1 49338 233055 1 0 Desulfitobacterium dichloroeliminans species 1497 species Desulfitobacterium dehalogenans 0 1235 1 36854 829 0 Desulfitobacterium metallireducens species 142877 1 genus 0 1337 1 51196 species Syntrophobotulus glycolicus 0 1337 1 51197 36 1562 5 1 4464 0 Desulfotomaculum genus 1565 1 723 0 Desulfotomaculum nigrificans species 1564 1 0 species Desulfotomaculum ruminis 2002 1 59610 species Desulfotomaculum reducens 0 750 1833852 1 953 0 species Desulfotomaculum ferrireducens 1095 1 Thermincola genus 0 2 2 278993 863643 1 1093 0 species Thermincola potens 79206 4 35 0 Desulfosporosinus genus 1 3197 1563 1 0 species Desulfosporosinus orientis 1011 1 885581 1095 species Desulfosporosinus acidiphilus 0 1 79209 species Desulfosporosinus meridiei 0 1056 362 12 186804 150743 1 Peptostreptococcaceae family 0 1411023 1 0 no rank 893 893 0 species Peptostreptococcaceae bacterium oral taxon 929 2081703 1 2 2 186831 1099 1 Acetoanaerobium genus 0 1 1511 1097 Acetoanaerobium sticklandii species 0 1232 1 Filifactor genus 0 2 2 44259 143361 1 0 Filifactor alocis species 1230 2 1849828 2 1 1966 0 genus Paeniclostridium 1505 1 1964 0 Paeniclostridium sordellii species 0 Peptoclostridium genus 1 2136 1481960 2 1 1 1731 species Peptoclostridium acidaminophilum 0 2135 143055 1 Clostridioides genus 0 244 2 1870884 1496 1 0 Clostridioides difficile species 142811 1 20380 0 family Eubacteriaceae 14 186806 5 1 2 33951 1362 1 genus Acetobacterium 0 33952 1 0 species Acetobacterium woodii 1361 1 19004 0 genus Eubacterium 1131 1730 2 1736 1 0 Eubacterium limosum species 17873 39 68295 31 order Thermoanaerobacterales 0 20698 1 10 227387 3 1 382 0 Thermodesulfobiaceae family 227388 2 1 0 genus Thermodesulfobium 1 372 0 Thermodesulfobium narugense species 371 184064 1 0 family Thermoanaerobacteraceae 1 10164 186814 19 43 5654 1 Thermoanaerobacter genus 0 180 9 1754 species Thermoanaerobacter italicus 0 599 1 108150 1637 0 no rank 2636821 2 Thermoanaerobacter sp. X514 species 0 853 1 399726 573062 1 0 species Thermoanaerobacter sp. X513 784 species Thermoanaerobacter mathranii 0 520 1 583357 580 0 Thermoanaerobacter kivui species 2325 1 1 496866 Thermoanaerobacter pseudethanolicus species 0 811 46354 1 516 0 species Thermoanaerobacter wiegelii Thermoanaerobacter brockii species 0 811 1 29323 0 genus 686 129957 1 129958 1 686 0 Carboxydothermus hydrogenoformans species 13 2 249529 725 1 genus Caldanaerobacter 0 712 Caldanaerobacter subterraneus species 0 1 911092 2114 no rank 0 4 42857 2 44260 1 genus Moorella 0 1396 1 1395 0 species Moorella thermoacetica 1525 1 0 genus Ammonifex 1 718 42837 2 13 species Ammonifex degensii 0 705 1 42838 0 genus Thermacetogenium 1 942 140458 2 16 85874 1 0 species Thermacetogenium phaeum 926 8 543372 3 1 940 0 Thermoanaerobacterales Family IV. Incertae Sedis family 1 932 0 genus Mahella 8 252965 2 924 species Mahella australiensis 0 1 252966 12 13 543371 9181 1 Thermoanaerobacterales Family III. Incertae Sedis family 0 1 2868 0 genus Thermoanaerobacterium 10 28895 3 Thermoanaerobacterium xylanolyticum species 0 986 1 29329 1872 0 species Thermoanaerobacterium thermosaccharolyticum 1517 1 1 6301 0 genus Caldicellulosiruptor 73 44000 9 1 413888 Caldicellulosiruptor hydrothermalis species 0 644 1 717609 874 species Caldicellulosiruptor obsidiansis 0 413889 1 0 Caldicellulosiruptor kronotskyensis species 811 52765 1 0 Caldicellulosiruptor kristjanssonii species 633 44001 1 0 Caldicellulosiruptor saccharolyticus species 867 782 0 Caldicellulosiruptor bescii species 31899 1 1 55205 species Caldicellulosiruptor owensensis 0 929 0 species Caldicellulosiruptor lactoaceticus 688 52766 1 no rank 0 712 1 84086 0 endosymbiont 'TC1' of Trimyema compressum species 712 243899 1 704 0 phylum 67819 5 704 1 Fimbriimonadia class 0 1 5 1663419 4 1663425 4 order Fimbriimonadales 0 703 1 1 699 0 family Fimbriimonadaceae 8 1663426 3 Fimbriimonas genus 0 691 1 2 1005038 1 1005039 1 0 Fimbriimonas ginsengisoli species 690 36 1297 phylum 0 25884 134 36 188787 25884 1 Deinococci class 0 0 Deinococcales order 1 16197 118964 15 143 183710 14 127 0 family Deinococcaceae 1 16054 15927 1 genus Deinococcus 0 236 13 1298 Deinococcus proteolyticus species 0 1816 1 55148 866 species Deinococcus geothermalis 0 1 68909 1170 species Deinococcus radiodurans 0 1 1299 1142 0 species Deinococcus maricopensis 309887 1 1139 0 no rank 2623546 1 species Deinococcus sp. NW-56 0 1139 1 2080419 0 species Deinococcus swuensis 1910 1182571 1 Deinococcus peraridilitoris species 0 949 1 432329 1 1182568 Deinococcus puniceus species 0 1094 1768108 1 1513 0 species Deinococcus actinosclerus 1309411 1 1411 0 species Deinococcus soli Cha et al. 2016 1 310783 Deinococcus deserti species 0 854 1827 species Deinococcus gobiensis 0 1 502394 3 2762275 order 0 745 family Trueperaceae 0 745 1 3 332247 8 17 2 332248 737 1 Truepera genus 0 720 0 species Truepera radiovictrix 332249 1 126 68933 17 1 8808 0 order Thermales 8682 1 Thermaceae family 0 72 16 188786 149 270 8 1 4966 0 genus Thermus 566 no rank 0 1 2619321 566 species Thermus sp. CCB_US3_UF1 0 1 1111069 1239 species Thermus thermophilus 0 1 274 1 271 811 species Thermus aquaticus 0 1 56957 species Thermus oshimai 0 708 0 Thermus brockianus species 426 56956 1 456163 1 0 Thermus parvatiensis species 520 1 37636 species Thermus scotoductus 0 547 genus Oceanithermus 0 1434 1 2 208447 7 1 187137 1427 species Oceanithermus profundus 0 65551 3 12 0 genus Meiothermus 1 1629 879 0 species Meiothermus silvanus 52022 1 277 1 0 species Meiothermus ruber 738 1 581 0 genus Marinithermus 8 186191 2 1 186192 species Marinithermus hydrothermalis 0 573 4 46 200795 12876 1 Chloroflexi phylum 0 189775 8 8 0 Thermomicrobia class 1 1524 1 382 0 Thermomicrobiales order 3 189776 3 3 189777 2 1 379 0 Thermomicrobiaceae family genus 0 376 1 499 376 0 Thermomicrobium roseum species 500 1 1134 subclass 0 4 85000 85001 4 23 0 order Sphaerobacterales 1 1134 3 255728 suborder 0 1111 1111 1 Sphaerobacteraceae family 0 9 3 85002 1102 1 genus Sphaerobacter 0 32 2 2056 0 species Sphaerobacter thermophilus 1070 2057 1 class Chloroflexia 0 3253 1 11 32061 2 3251 1 Chloroflexales order 0 25 10 32064 1659 0 suborder 1508594 5 1 1659 0 family Chloroflexaceae 1 1106 5 16 4 1107 1658 1 genus Chloroflexus 0 636 1108 2 1 1260 0 species Chloroflexus aurantiacus 480224 1 0 strain Chloroflexus sp. Y-400-fl 624 Chloroflexus aggregans species 0 382 1 152260 0 suborder 1567 1508595 4 4 1508635 7 Roseiflexaceae family 0 1567 1 120961 3 7 0 Roseiflexus genus 1 1560 2609473 1 806 0 no rank species Roseiflexus sp. RS-1 0 806 1 357808 120962 1 747 0 Roseiflexus castenholzii species 1382928 5 29 0 class Ardenticatenia 1 2068 44 4 1382929 2039 1 Ardenticatenales order 0 3 1382930 11 family Ardenticatenaceae 0 1995 1 18 1988031 2 1 1984 0 genus Candidatus Promineofilum 1 1806508 Candidatus Promineofilum breve species 0 1966 1148 1 class Caldilineae 0 8 5 475962 0 order Caldilineales 1 1140 475963 4 7 1133 1 Caldilineaceae family 0 7 3 475964 18 2 233191 1126 1 Caldilinea genus 0 1108 0 Caldilinea aerophila species 133453 1 2175 1 Anaerolineae class 0 5 7 292625 1 2170 0 Anaerolineales order 11 292629 6 12 5 292628 2159 1 Anaerolineaceae family 0 233189 1 1035 0 genus 1 167964 Anaerolinea thermophila species 0 1035 766 0 no rank 1324991 1 1 1889813 Anaerolineaceae bacterium oral taxon 439 species 0 766 3 2019482 2 1 346 0 genus Brevefilum 1 1986204 species Brevefilum fermentans 0 343 2704 1 Dehalococcoidia class 0 6 9 301297 1 1202465 5 1 1551 0 Dehalococcoidales order 0 Dehalococcoidaceae family 1 1550 1202464 4 4 1546 1 genus Dehalococcoides 0 3 3 61434 211 no rank 0 1 237581 211 Dehalococcoides sp. UCH007 species 0 1 1522671 0 species Dehalococcoides mccartyi 1332 61435 1 12 670486 3 1 1147 0 genus Dehalogenimonas 1 1839801 463 Dehalogenimonas formicexedens species 0 Dehalogenimonas lykanthroporepellens species 0 672 1 552810 1 2091836 0 Actinobacteria phylum 61 201174 655 4322 601 1760 1966601 1 class Actinobacteria 0 7 2039638 12 1 1534 0 order Candidatus Nanopelagicales 2162846 11 0 family 1527 3 2039639 4 1 297 0 Candidatus Nanopelagicus genus 1884634 1 0 species Candidatus Nanopelagicus limnes 76 99 0 Candidatus Nanopelagicus hibericus species 1884915 1 119 0 species Candidatus Nanopelagicus abundans 1884916 1 1 1230 0 Candidatus Planktophila genus 23 622681 7 123 Candidatus Planktophila limnetica species 0 1 573600 1884907 1 118 0 species Candidatus Planktophila vernalis 243 Candidatus Planktophila dulcis species 0 1 1884914 1884913 1 0 Candidatus Planktophila lacus species 249 1 1884905 Candidatus Planktophila versatilis species 0 338 136 0 Candidatus Planktophila sulfonica species 1884904 1 34 1643683 4 1 285 0 order Acidothermales 1 251 0 family Acidothermaceae 2 85032 3 2 28048 5 genus Acidothermus 0 249 1 1 28049 244 Acidothermus cellulolyticus species 0 1 107672 0 Corynebacteriales order 856 85007 163 1 27110 0 family Nocardiaceae 181 85025 31 16879 1 Rhodococcus genus 0 666 23 1827 1830 1 0 species Rhodococcus ruber 876 864 0 Rhodococcus aetherivorans species 191292 1 1 1829 Rhodococcus rhodochrous species 0 606 666 0 Rhodococcus pyridinivorans species 103816 1 192944 12 0 no rank 7056 1 1807790 species Rhodococcus sp. BH4 0 402 1564114 1 0 species Rhodococcus sp. B7740 620 935199 1 585 0 species Rhodococcus sp. p52 470 Rhodococcus sp. YL-1 species 0 1 1045808 Rhodococcus sp. 2G species 0 614 1 1570939 1 1805827 689 species Rhodococcus sp. MTM3W5.2 0 630 0 Rhodococcus sp. H-CA8f species 1727214 1 0 species Rhodococcus sp. PBTS 2 656 1653479 1 679318 1 357 0 species Rhodococcus sp. WMMA185 643 0 species Rhodococcus sp. PBTS 1 1653478 1 1 1033922 1000 species Rhodococcus sp. WB1 0 390 0 Rhodococcus sp. 008 species 1723645 1 1 334542 474 species Rhodococcus qingshengii 0 2175 0 species Rhodococcus opacus 37919 1 791 Rhodococcus erythropolis species 0 1 1833 1828 1 788 0 species Rhodococcus fascians Rhodococcus hoagii species 0 707 1 43767 species Rhodococcus jostii 0 1210 1 132919 0 Nocardia genus 1 10050 1817 7 170 135487 1 2046 0 species Nocardia cyriacigeorgica 37332 1 0 Nocardia seriolae species 1490 2251 species Nocardia brasiliensis 0 1 37326 0 Nocardia farcinica species 1571 37329 1 1 37330 Nocardia nova species 0 1053 1469 0 species Nocardia terpenica 455432 1 Mycobacteriaceae family 0 39202 1 57 1762 165 3437 genus 0 5 670516 0 species Mycobacterium stephanolepidis 542 1520670 1 1774 1 428 0 species Mycobacterium chelonae 36809 1 1312 0 species Mycobacterium abscessus 83262 1 0 species Mycobacterium immunogenum 509 Mycobacterium saopaulense species 0 646 1 1578165 0 Mycobacterium genus 1 22663 1763 34 1793 1021 species Mycobacterium dioxanotrophicus 0 1 482462 1768 1 851 0 Mycobacterium kansasii species 4 77643 1452 species group 0 0 species Mycobacterium canettii 363 78331 1 1089 1 Mycobacterium tuberculosis species 0 379 3 1773 1765 1 0 Mycobacterium bovis biotype 355 0 Mycobacterium africanum biotype 355 33894 1 261524 1 0 Mycobacterium liflandii species 484 1 1809 Mycobacterium ulcerans species 0 620 4940 species group 0 8 120793 0 species Mycobacterium intracellulare 1 1336 1767 4 297 35617 1 0 Mycobacterium indicus pranii subspecies 198 1203599 1 0 Mycobacterium yongonense subspecies 255 1 222805 Mycobacterium chimaera subspecies 0 586 species Mycobacterium colombiense 0 1001 1 339268 species Mycobacterium avium 0 1651 1 1764 1 701042 733 species Mycobacterium marseillense 0 1 1138383 219 species Mycobacterium paraintracellulare 0 29311 1 0 species Mycobacterium haemophilum 374 species Mycobacterium marinum 0 725 1 1781 13 2642494 9426 no rank 0 164757 1 0 Mycobacterium sp. JLS species 554 1 2051552 900 species Mycobacterium sp. PYR15 0 species Mycobacterium sp. KMS 0 549 1 189918 1 1168287 215 species Mycobacterium sp. MOTT36Y 0 212767 1 830 0 species Mycobacterium sp. JS623 1 1879023 1232 Mycobacterium sp. djl-10 species 0 1 164756 Mycobacterium sp. MCS species 0 539 1920667 1 861 0 species Mycobacterium sp. WY10 1545728 1 0 Mycobacterium sp. EPa45 species 901 694 species Mycobacterium sp. VKM Ac-1817D 0 1 1273687 0 Mycobacterium sp. NRRL B-3805 species 938 1570328 1 1 1682113 Mycobacterium sp. YC-RL4 species 0 761 1 1561223 452 Mycobacterium sp. QIA-37 species 0 241 0 species Mycobacterium leprae 1769 1 736 species group 0 1 2249310 0 species Mycobacterium shigaense 736 722731 1 1 401 0 Hoyosella genus 7 697025 2 0 Hoyosella subflava species 394 639313 1 11336 genus 0 13 1866885 586 0 species Mycobacterium rhodesiae 36814 1 species Mycobacterium goodii 0 1126 1 134601 0 Mycobacterium phlei species 913 1771 1 758802 1 955 0 Mycobacterium litorale species 961 Mycobacterium gilvum species 0 1 1804 1772 1 0 species Mycobacterium smegmatis 942 1 1795 species Mycobacterium neoaurum 0 938 707 0 species Mycobacterium fortuitum 1766 1 1800 1 0 Mycobacterium chubuense species 740 Mycobacterium vanbaalenii species 0 787 1 110539 696 species Mycobacterium thermoresistibile 0 1 1797 1 1810 species Mycobacterium vaccae 0 802 1791 1 0 Mycobacterium aurum species 1183 genus 0 1200 2 1073531 727 Mycobacterium terrae species 0 1 1788 875328 1 0 species Mycobacterium sinense 473 697024 2 0 no rank 398 1847725 2 6 0 genus Lawsonella 1 398 1 1528099 392 species Lawsonella clevelandensis 0 5297 1 Gordoniaceae family 0 50 9 85026 2053 8 145 0 Gordonia genus 1 5247 no rank 0 1558 2 2657482 784 Gordonia sp. YC-JH1 species 0 1 2059875 1 337191 774 species Gordonia sp. KTR9 0 species Gordonia iterans 0 702 1 1004901 84595 1 665 0 species Gordonia polyisoprenivorans 0 species Gordonia terrae 806 2055 1 1136941 1 741 0 Gordonia phthalatica species 1 2054 630 species Gordonia bronchialis 0 3 316606 2 family Segniliparaceae 0 343 1 17 2 286801 341 1 Segniliparus genus 0 species Segniliparus rotundus 0 324 1 286802 1 1104 0 Dietziaceae family 10 85029 4 37914 3 22 0 genus Dietzia 1 1094 0 Dietzia timorensis species 483 499555 1 1 2617939 589 no rank 0 1 712270 589 species Dietzia sp. oral taxon 368 0 6 4 85028 1538 1 family Tsukamurellaceae 0 1 1532 0 genus Tsukamurella 24 2060 3 1 2061 524 Tsukamurella paurometabola species 0 1 57704 Tsukamurella tyrosinosolvens species 0 984 1 31824 0 Corynebacteriaceae family 182 1653 52 Corynebacterium genus 0 31642 1 51 1716 735 1 161899 Corynebacterium singulare species 0 502 Corynebacterium kroppenstedtii species 0 287 1 161879 1 146827 910 species Corynebacterium simulans 0 species Corynebacterium striatum 0 1280 1 43770 0 Corynebacterium camporealensis species 584 161896 1 0 species Corynebacterium callunae 560 1721 1 482 0 Corynebacterium stationis species 1705 1 species Corynebacterium crudilactis 0 268 1 1652495 789 Corynebacterium imitans species 0 1 156978 1 89154 630 species Corynebacterium terpenotabidum 0 605 Corynebacterium maris species 0 1 575200 1 108486 617 Corynebacterium falsenii species 0 1 191610 Corynebacterium atypicum species 0 545 1 43771 species Corynebacterium urealyticum 0 595 1408191 1 389 0 species Corynebacterium deserti 1 1223514 732 species Corynebacterium humireducens 0 935 0 species Corynebacterium marinum 349751 1 1 1230998 species Corynebacterium frankenforstense 0 913 1270 species Corynebacterium jeikeium 0 1 38289 625 species Corynebacterium glyciniphilum 0 1 1404244 35755 1 153 0 species Corynebacterium kutscheri 1 203263 Corynebacterium aquilae species 0 745 0 species Corynebacterium cystitidis 452 35757 1 Corynebacterium ammoniagenes species 0 341 1 1697 92706 1 0 species [Brevibacterium] flavum 336 852 0 Corynebacterium efficiens species 152794 1 533 0 Corynebacterium testudinoris species 136857 1 571915 1 0 Corynebacterium mustelae species 344 160386 1 346 0 Corynebacterium casei species 618 0 Corynebacterium glaucum species 187491 1 1 225326 Corynebacterium halotolerans species 0 916 species Corynebacterium lactis 0 629 1 1231000 605 0 species Corynebacterium aurimucosum 169292 1 1 1050174 Corynebacterium epidermidicanis species 0 380 449 species Corynebacterium resistens 0 1 258224 2 2624378 no rank 0 1059 1 702967 554 Corynebacterium sp. NML98-0116 species 0 1487956 1 0 Corynebacterium sp. ATCC 6931 species 505 1 28028 517 Corynebacterium flavescens species 0 species Corynebacterium argentoratense 0 385 1 42817 315 species Corynebacterium pseudotuberculosis 0 1 1719 709 Corynebacterium doosanense species 0 1 1121358 1 161895 515 species Corynebacterium phocae 0 1 191493 1086 species Corynebacterium sphenisci 0 0 Corynebacterium variabile species 1088 1727 1 1 1718 species Corynebacterium glutamicum 0 794 1 401472 species Corynebacterium ureicelerivorans 0 528 1 65058 393 species Corynebacterium ulcerans 0 1 38305 1166 Corynebacterium vitaeruminis species 0 530 0 Corynebacterium diphtheriae species 1717 1 1072256 1 0 Corynebacterium uterequi species 605 66 85012 16 1 11351 0 order Streptosporangiales 1 2030 0 family Thermomonosporaceae 23 2012 3 1 2007 0 Thermomonospora genus 41 2019 2 1966 Thermomonospora curvata species 0 1 2020 5 2004 103 family Streptosporangiaceae 0 4840 1 1 2703 0 Nonomuraea genus 37 83681 2 2593643 1 2666 0 no rank 1 1909395 2666 species Nonomuraea sp. ATCC 55076 0 genus Streptosporangium 0 2034 1 2 2000 46 1 2001 species Streptosporangium roseum 0 1988 83676 7 61 0 family Nocardiopsaceae 1 4415 0 Thermobifida genus 1 731 83677 2 6 2021 1 725 0 species Thermobifida fusca 3623 1 genus Nocardiopsis 0 60 4 2013 0 Nocardiopsis alba species 1055 53437 1 1 2014 Nocardiopsis dassonvillei species 0 1429 1079 species Nocardiopsis gilva 0 1 280236 18 4 414714 2053 1 Catenulisporales order 0 family Catenulisporaceae 0 2035 1 3 414877 35 414878 2 12 0 genus Catenulispora 1 2000 1 304895 1988 Catenulispora acidiphila species 0 1643682 8 11 0 order Geodermatophilales 1 3526 Geodermatophilaceae family 0 3515 1 7 85030 103 2 38501 15 genus Blastococcus 0 912 1 138336 1 897 0 Blastococcus saxobsidens species 1860 2 7 0 genus Geodermatophilus 1 1078 1071 0 Geodermatophilus obscurus species 1861 1 1 1422 0 genus Modestobacter 13 88138 2 477641 1 1409 0 Modestobacter marinus species 701 145 85006 74356 1 Micrococcales order 0 6 85016 28 family Cellulomonadaceae 0 2473 1 1707 5 74 0 Cellulomonas genus 1 2445 1708 1 605 0 Cellulomonas fimi species 1711 1 698 0 Cellulomonas flavigena species 558 0 species Cellulomonas gilvus 11 1 510 no rank 0 1 2620175 510 Cellulomonas sp. PSBB021 species 0 1 2003551 735 1 family Sanguibacteraceae 0 7 3 145360 1 728 0 Sanguibacter genus 15 60919 2 713 0 species Sanguibacter keddieii 60920 1 6 3 85018 338 1 family Dermatophilaceae 0 6 1862 2 1 332 0 Dermatophilus genus Dermatophilus congolensis species 0 326 1 1863 Promicromonosporaceae family 0 4138 1 9 85017 72 1 991 0 genus Xylanimonas 17 186188 2 0 Xylanimonas cellulosilytica species 974 186189 1 0 Isoptericola genus 1 1599 254250 3 29 746 species Isoptericola variabilis 0 1 139208 824 Isoptericola dokdonensis species 0 1 372663 genus Cellulosimicrobium 0 1476 1 3 157920 29 1 1710 839 species Cellulosimicrobium cellulans 0 608 no rank 0 1 2624466 0 species Cellulosimicrobium sp. TH-20 608 1980001 1 29 7 145357 2301 1 family Dermacoccaceae 0 745364 2 14 0 genus Luteipulveratus 1 719 705 Luteipulveratus mongoliensis species 0 1 571913 genus Dermacoccus 0 639 1 2 57495 1 1274 1 638 0 Dermacoccus nishinomiyaensis species 2 57499 19 Kytococcus genus 0 914 1 1 1276 species Kytococcus sedentarius 0 895 2 577468 97 no rank 0 2038 2 8 0 Tropheryma genus 1 97 species Tropheryma whipplei 0 89 1 2039 7 3 85019 1437 1 family Brevibacteriaceae 0 2 1696 24 genus Brevibacterium 0 1430 1 0 species Brevibacterium linens 1406 1703 1 1 6138 0 family Dermabacteraceae 57 85020 11 6 43668 76 genus Brachybacterium 0 5395 1 2017485 1 1182 0 Brachybacterium sp. VR2415 species 1084 0 species Brachybacterium ginsengisoli 1331682 1 1 43669 Brachybacterium faecium species 0 993 1 2017484 1125 species Brachybacterium sp. VM2412 0 2623841 1 935 0 no rank 935 Brachybacterium sp. P6-10-X1 species 0 1 1903186 472568 2 2 0 genus Devriesea 1 296 Devriesea agamarum species 0 294 1 472569 2 2 36739 390 1 Dermabacter genus 0 1630135 1 0 species Dermabacter vaginalis 388 125316 3 2 0 family Beutenbergiaceae 1 714 1 712 0 Beutenbergia genus 16 84756 2 species Beutenbergia cavernae 0 696 1 84757 85022 2 233 0 family 1 233 0 Jonesia genus 9 43673 2 1 43674 224 Jonesia denitrificans species 0 47 85023 304 Microbacteriaceae family 0 22477 1 1 853 0 Agromyces genus 2 33877 2 1 453304 851 species Agromyces aureus 0 0 no rank 377 1655488 3 1655489 3 377 0 clade 1 3 529883 377 1 genus Rhodoluna 0 529884 1 190 0 species Rhodoluna lacicola 535712 1 0 species Candidatus Rhodoluna planktonica 186 14 3 69578 2233 1 Cryobacterium genus 0 1 670052 1228 Cryobacterium arcticum species 0 2649013 1 0 no rank 991 0 species Cryobacterium sp. LW097 991 1978566 1 genus Rathayibacter 0 765 1 3 33886 2 1 33888 458 Rathayibacter tritici species 0 Rathayibacter toxicus species 0 305 1 145458 Microcella genus 0 603 1 2 337004 7 1 279828 Microcella alkaliphila species 0 596 genus Clavibacter 0 2772 1 6 1573 178 Clavibacter michiganensis species 0 2594 1 5 28447 482 31963 1 556 0 Clavibacter nebraskensis subspecies 518 subspecies Clavibacter insidiosus 0 1 33014 1 31964 511 subspecies Clavibacter sepedonicus 0 Clavibacter capsici subspecies 0 527 1 1874630 645 1 genus Cnuibacter 0 5 2 1759331 0 species Cnuibacter physcomitrellae 640 1619308 1 1 518733 genus 0 698 species Microterricola viridarii 0 698 1 412690 2 110932 21 genus Leifsonia 0 1809 1 Leifsonia xyli species 0 1788 1 1575 1705353 2 2 0 Aurantimicrobium genus 1 184 species Aurantimicrobium minutum 0 182 1 708131 33882 14 116 0 genus Microbacterium 1 8297 1 36805 Microbacterium aurum species 0 767 0 Microbacterium testaceum species 635 2033 1 1 162426 674 species Microbacterium hominis 0 5206 0 no rank 2609290 8 603 Microbacterium sp. CGR1 species 0 1 1696072 712 species Microbacterium sp. No. 7 0 1 1714373 Microbacterium sp. BH-3-3-3 species 0 638 1 1906742 816 0 Microbacterium sp. PAMC 28756 species 1795053 1 0 species Microbacterium sp. XT11 629 367477 1 1 1938334 Microbacterium sp. TPU 3598 species 0 508 663 0 species Microbacterium sp. 1.5R 1916917 1 1 2103230 Microbacterium sp. str. 'China' species 0 637 329 0 species Microbacterium chocolatum 84292 1 570 0 Microbacterium paludicola species 300019 1 genus 0 346 1 1434032 0 species Pontimonas salivibrio 346 1159327 1 0 genus 724 447237 1 2626248 1 0 no rank 724 1795630 1 724 0 Frondihabitans sp. PAMC 28766 species 1 1867 0 genus Curtobacterium 33 2034 4 69373 1 649 0 species Curtobacterium pusillum 1185 0 no rank 257496 2 598 0 Curtobacterium sp. BH-2-1-1 species 1905847 1 1 1561023 587 species Curtobacterium sp. MR_MD2014 0 39 1268 783 Micrococcaceae family 0 29258 1 1269 2 7 0 Micrococcus genus 1 1150 1270 1 0 species Micrococcus luteus 1143 1868332 2 4 0 Neomicrococcus genus 1 1754 1 556325 1750 Neomicrococcus aestuarii species 0 genus Paenarthrobacter 0 832 1 2 1742992 4 species Paenarthrobacter aurescens 0 828 1 43663 0 Sinomonas genus 1 911 596707 2 2 1 37927 909 species Sinomonas atrocyanea 0 Glutamicibacter genus 0 1355 1 2 1742989 5 0 Glutamicibacter arilaitensis species 1350 256701 1 genus 0 279 1 1645 1 1646 Renibacterium salmoninarum species 0 279 genus Pseudarthrobacter 0 2899 1 4 1742993 38 Pseudarthrobacter sulfonivorans species 0 931 1 121292 Pseudarthrobacter phenanthrenivorans species 0 853 1 361575 1077 Pseudarthrobacter chlorophenolicus species 0 1 85085 30 4 57493 2880 1 Kocuria genus 0 858 0 species Kocuria rhizophila 72000 1 Kocuria palustris species 0 923 1 71999 1069 0 Kocuria flava species 446860 1 12880 1 Arthrobacter genus 0 260 15 1663 0 no rank 10132 235627 12 1494608 1 0 Arthrobacter sp. PAMC 25486 species 724 1771959 1 0 Arthrobacter sp. ATCC 21022 species 531 1849032 1 836 0 Arthrobacter sp. U41 species species Arthrobacter sp. FB24 0 898 1 290399 1 1806905 624 species Arthrobacter sp. ZXY-2 0 1 1357915 Arthrobacter sp. QXT-31 species 0 1288 783 0 species Arthrobacter sp. PGP41 2079227 1 species Arthrobacter sp. LS16 0 936 1 1690248 Arthrobacter sp. Rue61a species 0 560 1 1118963 species Arthrobacter sp. YC-RL1 0 1028 1 1652545 1 2020486 species Arthrobacter sp. YN 0 1009 1 1704044 species Arthrobacter sp. ERGS1:01 0 915 0 species Arthrobacter crystallopoietes 1228 37928 1 1260 Arthrobacter alpinus species 0 1 656366 1 3267 0 genus Rothia 4 32207 3 43675 1 0 species Rothia mucilaginosa 2888 1 2047 375 species Rothia dentocariosa 0 0 genus 268 2078575 1 0 Arthrobacter sp. IHBB 11108 species 268 1618207 1 85021 9 65 0 family Intrasporangiaceae 1 3316 11 53357 2 1 595 0 Intrasporangium genus 0 species Intrasporangium calvum 584 53358 1 941 1 Serinicoccus genus 0 18 2 265976 1 1758689 923 species Serinicoccus sp. JLT9 0 2 267408 18 genus Arsenicicoccus 0 1097 1 2663846 1 0 no rank 1079 1 1658671 Arsenicicoccus sp. oral taxon 190 species 0 1079 2 53457 23 genus Janibacter 0 618 1 1 857417 species Janibacter indicus 0 595 0 Pseudonocardiales order 1 36260 85010 42 118 2070 41 505 0 family Pseudonocardiaceae 1 36142 32 43356 2 1 1973 0 genus Kutzneria 1 43357 1941 species Kutzneria albida 0 114 1847 8 1 7036 0 Pseudonocardia genus 1 240495 1375 Pseudonocardia dioxanivorans species 0 6 2619320 no rank 0 5547 1 1690815 species Pseudonocardia sp. HH130630-07 0 855 Pseudonocardia sp. EC080619-01 species 0 966 1 1096856 1 1688404 species Pseudonocardia sp. EC080610-09 0 959 445576 1 1141 0 species Pseudonocardia sp. AL041005-10 794 0 Pseudonocardia sp. EC080625-04 species 1096868 1 1641402 1 832 0 Pseudonocardia sp. HH130629-09 species 9 2071 2 1 1556 0 Saccharothrix genus 0 Saccharothrix espanaensis species 1547 103731 1 11 142577 2 1 692 0 genus Prauserella species Prauserella marina 0 681 1 530584 1 1570 0 Kibdelosporangium genus 5 2029 2 860235 1 0 species Kibdelosporangium phytohabitans 1565 29 1835 2 1 1429 0 Saccharopolyspora genus 1 1836 Saccharopolyspora erythraea species 0 1400 114 1813 7 1 9308 0 Amycolatopsis genus 208439 1 0 Amycolatopsis japonica species 1090 31958 1 2259 0 Amycolatopsis orientalis species 1088 species Amycolatopsis methanolica 0 1 1814 0 Amycolatopsis mediterranei species 1649 33910 1 2618356 2 3108 0 no rank 0 Amycolatopsis sp. AA4 species 1770 1896961 1 1 1911175 Amycolatopsis sp. BJA-103 species 0 1338 5271 1 genus Actinoalloteichus 0 74 6 65496 species Actinoalloteichus hoggarensis 0 1281 1 1470176 1 340345 852 Actinoalloteichus hymeniacidonis species 0 1612552 1 1063 0 species Actinoalloteichus sp. ADI127-7 2644606 2 0 no rank 2001 2072503 1 0 species Actinoalloteichus sp. AHMU CJ021 987 1014 0 Actinoalloteichus sp. GBA129-24 species 1612551 1 18 2 674734 1194 1 genus Alloactinosynnema 0 1 2636053 no rank 0 1176 1 1653480 1176 species Alloactinosynnema sp. L-07 0 79 3 40566 3601 1 Actinosynnema genus 0 1 40567 species Actinosynnema mirum 0 1730 Actinosynnema pretiosum species 0 1792 1 42197 2 165301 9 genus Lentzea 0 1461 1 1 1586287 species Lentzea guizhouensis 0 1452 1 2 1851 546 1 genus Saccharomonospora 0 1852 1 545 0 Saccharomonospora viridis species 77 26 85004 1551076 1 Bifidobacteriales order 0 family Bifidobacteriaceae 0 1550999 1 25 31953 4133 19 1678 1269 Bifidobacterium genus 0 1544702 1 1578 0 species Bifidobacterium choerinum 35760 1 1 1689 Bifidobacterium dentium species 0 5351 2286 Bifidobacterium animalis species 0 1 28025 2490 Bifidobacterium pseudolongum species 0 1 1694 46891 0 Bifidobacterium bifidum species 1681 1 1 1684 Bifidobacterium asteroides species 0 1282 178407 0 Bifidobacterium pseudocatenulatum species 28026 1 1 1687 species Bifidobacterium coryneforme 0 502 199339 Bifidobacterium longum species 0 1 216816 1 1691 644 Bifidobacterium indicum species 0 33905 1 1863 0 species Bifidobacterium thermophilum 1 1683 species Bifidobacterium angulatum 0 11147 1 638619 Bifidobacterium actinocoloniiforme species 0 855 0 species Bifidobacterium adolescentis 939858 1680 1 36871 0 species Bifidobacterium breve 1685 1 0 species Bifidobacterium catenulatum 1 110782 1686 2 44418 1 630129 66364 Bifidobacterium kashiwanohense subspecies 0 3287 0 species Bifidobacterium scardovii 158787 1 966 1 genus Parascardovia 0 4 2 196082 962 0 species Parascardovia denticolens 78258 1 Gardnerella genus 0 718 1 2 2701 1 2702 1 717 0 species Gardnerella vaginalis 480 0 genus 196081 1 480 species Scardovia inopinata 0 1 78259 0 Streptomycetales order 1 107778 85011 82 265 81 2062 887 Streptomycetaceae family 0 107513 1 1 6214 0 Kitasatospora genus 57 2063 5 no rank 0 1948 1 2633591 2018025 1 1948 0 species Kitasatospora sp. MMS16-BH015 Kitasatospora setae species 0 1572 1 2066 1140 0 species Kitasatospora albolonga 68173 1 1497 0 species Kitasatospora aureofaciens 1894 1 0 Streptomyces genus 1 100412 1883 75 3443 1 1915 species Streptomyces lincolnensis 0 1399 1000 species Streptomyces avermitilis 0 1 33903 0 species Streptomyces formicae 1101 1616117 1 1209 Streptomyces pristinaespiralis species 0 1 38300 1 408015 1317 species Streptomyces xiamenensis 0 1 67267 1596 species Streptomyces alboflavus 0 0 species Streptomyces collinus 1256 42684 1 1 362257 Streptomyces vietnamensis species 0 1363 2049881 1 0 species Streptomyces sp. XZHG99 1130 2593676 24 28579 0 no rank 1725411 1 1546 0 Streptomyces sp. CdTB01 species 2135430 1 0 species Streptomyces sp. P3 1556 species Streptomyces sp. 769 0 1475 1 1262452 1353 species Streptomyces sp. CMB-StM0423 0 1 2059884 1 1984801 Streptomyces sp. CLI2509 species 0 828 206662 1 1242 0 Streptomyces sp. FR-008 species 1972846 1 1154 0 species Streptomyces sp. Sge12 1751294 1 0 species Streptomyces sp. 4F 1183 0 species Streptomyces sp. Tue 6075 1312 1661694 1 species Streptomyces sp. MOE7 0 1250 1 1961713 1111 Streptomyces sp. CNQ-509 species 0 1 444103 1495638 1 0 Streptomyces sp. M56 species 1433 Streptomyces sp. SAT1 species 0 1258 1 1849967 species Streptomyces sp. WAC00288 0 901 1 2094021 1837283 1 0 Streptomyces sp. S8 species 845 species Streptomyces sp. TN58 0 1080 1 234612 1065 Streptomyces sp. Mg1 species 0 1 465541 Streptomyces sp. CFMR 7 species 0 1081 1 1649184 1 1964449 Streptomyces sp. 3211 species 0 1152 1841249 1 0 species Streptomyces sp. RTd22 1367 0 Streptomyces sp. fd1-xmd species 1113 1812480 1 1 1561022 1312 Streptomyces sp. CCM_MD2014 species 0 862751 1 928 0 species Streptomyces sp. SirexAA-E 1 1265601 species Streptomyces sp. PAMC 26508 0 1034 1477431 2 0 species group 2394 1 42239 1224 Streptomyces sampsonii species 0 1 1902 Streptomyces coelicolor species 0 1170 1142 species Streptomyces cyaneogriseus 0 1 68192 0 species Streptomyces leeuwenhoekii 1295 1437453 1 1 68202 859 species Streptomyces fulvissimus 0 92644 1 1346 0 Streptomyces malaysiensis species 629295 2 2145 0 species group 1095 species subgroup 0 1 1482596 1095 0 species Streptomyces griseus 1911 1 1482558 1 1050 0 species subgroup 1 1908 1050 species Streptomyces globisporus 0 1415 Streptomyces reticuli species 0 1 1926 1248 0 Streptomyces sp. S10(2016) species 1783515 1 29303 1 0 species Streptomyces cattleya 1551 1 1901 1156 Streptomyces clavuligerus species 0 949 species Streptomyces peucetius 0 1 1950 1907 1 1261 0 Streptomyces glaucescens species 1930 1 0 species Streptomyces scabiei 1291 1 1912 Streptomyces hygroscopicus species 0 3256 146923 1 1000 0 species Streptomyces parvulus 75293 1 1266 0 species Streptomyces autolyticus 1 164348 1436 species Streptomyces puniciscabiei 0 1435 0 Streptomyces albulus species 68570 1 1 68280 1332 Streptomyces violaceusniger species 0 1171 0 species Streptomyces xinghaiensis 1038928 1 0 Streptomyces venezuelae species 2150 54571 1 1 1888 species Streptomyces albus 0 2582 1239 0 Streptomyces alfalfae species 1642299 1 1 1914 1243 Streptomyces lavendulae species 0 Streptomyces bingchenggensis species 0 1651 1 379067 species Streptomyces pluripotens 0 950 1 1355015 1 1916 Streptomyces lividans species 0 1115 1 193462 Streptomyces niveus species 0 1009 886 species Streptomyces violaceoruber 0 1 1935 1147 0 Streptomyces ambofaciens species 1889 1 1 285473 species Streptomyces rubrolavendulae 0 1161 1 553510 1375 species Streptomyces gilvosporeus 0 1 1940 972 species Streptomyces albireticuli 0 1 1169025 species Streptomyces pratensis 0 820 1 68214 1334 species Streptomyces griseochromogenes 0 1219 0 Streptomyces chartreusis species 1969 1 1 47763 Streptomyces lydicus species 0 3539 1 1971 species Streptomyces noursei 0 1339 Streptomyces pactum species 0 2340 1 68249 35 20 85008 18195 1 Micromonosporales order 0 263 28056 19 1 18160 0 family Micromonosporaceae 1 Verrucosispora genus 0 1 84593 35 673534 4 1 4027 0 Plantactinospora genus 0 no rank 3992 2631981 3 1 2108470 species Plantactinospora sp. BC1 0 1269 0 species Plantactinospora sp. KBS50 1446 2024580 1 Plantactinospora sp. BB1 species 0 1277 1 2071627 3 168694 21 Salinispora genus 0 1905 1 1 168697 Salinispora arenicola species 0 919 1 168695 965 Salinispora tropica species 0 genus Actinoplanes 0 7978 1 6 1865 123 3 2626549 no rank 0 4661 649831 1 0 species Actinoplanes sp. N902-109 1719 2033844 1 0 Actinoplanes sp. SE50 species 1471 1471 species Actinoplanes sp. SE50/110 0 1 134676 1419 0 Actinoplanes missouriensis species 1866 1 1775 species Actinoplanes friuliensis 0 1 196914 65 4 1873 3986 1 Micromonospora genus 0 1 1003110 1146 Verrucosispora maris species 0 no rank 0 1451 1 2617518 648999 1 0 species Micromonospora sp. L5 1451 0 Micromonospora aurantiaca species 1324 47850 1 0 Propionibacteriales order 1 21963 85009 33 99 Propionibacteriaceae family 0 14967 1 19 31957 214 50 5 72763 4346 1 Tessaracoccus genus 0 1610493 1 870 0 species Tessaracoccus flavus 2635419 1 1202 0 no rank 1 1909732 Tessaracoccus sp. T2.5-30 species 0 1202 1259 Tessaracoccus aquimaris species 0 1 1332264 1 399497 species Tessaracoccus flavescens 0 965 1 2362 0 Cutibacterium genus 22 1912216 4 33010 1 1042 0 Cutibacterium avidum species 0 Cutibacterium granulosum species 562 33011 1 species Cutibacterium acnes 0 736 1 1747 2 1912215 6 genus Acidipropionibacterium 0 1558 1 1748 1 0 Acidipropionibacterium acidipropionici species 1552 0 genus Microlunatus 1 875 29404 2 11 species Microlunatus phosphovorus 0 864 1 29405 0 genus 780 2801844 1 1 1750 780 Pseudopropionibacterium propionicum species 0 0 genus 2427 203133 1 no rank 0 2427 1 2633994 1871034 1 2427 0 Propionimicrobium sp. Marseille-P3275 species 1743 3 35 0 Propionibacterium genus 1 2405 286 0 no rank 2608905 1 286 0 Propionibacterium sp. oral taxon 193 species 671223 1 1744 1 2084 0 Propionibacterium freudenreichii species 130 85015 13 1 6897 0 family Nocardioidaceae 1 1142 0 Micropruina genus 10 116071 2 75385 1 1132 0 Micropruina glycogenica species 7 2040 2 1 660 0 Aeromicrobium genus 653 0 species Aeromicrobium erythreum 2041 1 2044 2 39 0 Pimelobacter genus 1 1059 Pimelobacter simplex species 0 1020 1 2045 182639 2 21 0 Kribbella genus 1 1171 1150 0 species Kribbella flavida 182640 1 0 Nocardioides genus 1 2735 1839 4 58 species Nocardioides dokdonensis 0 952 1 450734 2615069 1 0 no rank 857 0 Nocardioides sp. JS614 species 857 196162 1 868 Nocardioides sp. 78 species 0 1 2045452 5 1643684 4 1 1417 0 order Nakamurellales 34 3 85031 1412 1 family Nakamurellaceae 0 1 1378 0 Nakamurella genus 17 53460 2 53461 1 1361 0 species Nakamurella multipartita 6 4 85014 1191 1 Glycomycetales order 0 23 3 85034 1185 1 Glycomycetaceae family 0 14 283810 2 1 1162 0 Stackebrandtia genus 1 283811 1148 species Stackebrandtia nassauensis 0 16603 1 order Actinomycetales 0 35 20 2037 Actinomycetaceae family 0 16568 1 19 2049 3269 2529408 1 0 genus 620 0 species Actinomyces meyeri 620 52773 1 2050 2 118 0 genus Mobiluncus 1 3134 2051 1 3016 0 species Mobiluncus curtisii 1 1069494 2 1 1225 0 Trueperella genus 1224 species Trueperella pyogenes 0 1 1661 28263 2 1 0 genus Arcanobacterium 1 469 species Arcanobacterium haemolyticum 0 468 1 28264 1653174 2 4 0 genus Actinotignum 1 618 59505 1 614 0 species Actinotignum schaalii 0 genus Actinomyces 1 7233 1654 9 151 species Actinomyces oris 0 922 1 544580 Actinomyces gaoshouyii species 0 660 1 1960083 2609248 3 3119 0 no rank 1 1851395 Actinomyces sp. Chiba101 species 0 908 712122 1 1309 0 Actinomyces sp. oral taxon 414 species 902 0 Actinomyces sp. oral taxon 897 species 2081702 1 0 Actinomyces sp. VUL4_3 species 385 1912795 1 1852377 1 0 species Actinomyces pacaensis 1014 111015 1 0 Actinomyces radicidentis species 982 1 705 0 order Actinopolysporales 3 622450 4 12 622451 3 1 702 0 Actinopolysporaceae family 1849 2 15 0 Actinopolyspora genus 1 690 414996 1 0 Actinopolyspora erythraea species 675 242 0 no rank 52018 1 242 species Actinobacteria bacterium IMCC26256 0 1 1650658 0 Frankiales order 1 4333 85013 7 43 90 74712 6 1 4290 0 family Frankiaceae 5 1854 63 genus Frankia 0 4200 1 1 298654 Frankia inefficax species 0 1331 0 species Frankia casuarinae 709 106370 1 1000 0 no rank 2632575 1 0 Frankia sp. EAN1pec species 1000 298653 1 1 1859 1097 species Frankia alni 0 order 0 1030 3 622452 1030 1 family Kineosporiaceae 0 22 3 83778 2 33981 8 Kineococcus genus 0 1008 1 1000 0 species Kineococcus radiotolerans 131568 1 1643818 2 709 0 no rank 4 147067 2 1 709 0 Thermobispora genus Thermobispora bispora species 0 705 1 2006 1599 1 Rubrobacteria class 0 5 6 84995 order Rubrobacterales 0 1594 1 5 84996 34 1560 1 family Rubrobacteraceae 0 13 4 84997 1547 1 Rubrobacter genus 0 34 3 42255 42256 1 0 species Rubrobacter radiotolerans 456 0 Rubrobacter xylanophilus species 1057 49319 1 120463 1 class Coriobacteriia 0 199 31 84998 1643822 16 231 0 order Eggerthellales 1 99274 1643826 15 7292 0 family Eggerthellaceae 1 99043 44967 1 Adlercreutzia genus 0 3 2 447020 44964 0 Adlercreutzia equolifaciens species 446660 1 1 24092 0 Eggerthella genus 115 84111 3 0 Eggerthella lenta species 21876 84112 1 1 2648737 no rank 0 2101 1 502558 2101 species Eggerthella sp. YY7918 0 0 genus 2135 79603 1 1 79604 2135 Denitrobacterium detoxificans species 0 644652 3 60 0 Gordonibacter genus 1 12802 1 1841863 5167 species Gordonibacter massiliensis 0 7575 0 species Gordonibacter urolithinfaciens 1335613 1 0 genus Cryptobacterium 1 850 84162 2 4 846 Cryptobacterium curtum species 0 1 84163 3794 1 genus Slackia 0 8 2 84108 species Slackia heliotrinireducens 0 3786 1 84110 1 1981050 3111 genus 0 species Phoenicibacter massiliensis 0 3111 1 1944646 20990 1 order Coriobacteriales 0 183 14 84999 82 7 1643824 10426 1 family Atopobiaceae 0 genus 0 653 1 2767353 653 0 Atopobium parvulum species 1382 1 1 9689 0 Olsenella genus 89 133925 4 133926 1 2969 0 species Olsenella uli 2638792 1 2028 0 no rank 712411 1 0 Olsenella sp. oral taxon 807 species 2028 4603 0 Olsenella sp. Marseille-P2300 species 1805478 1 0 Atopobium genus 2 1380 1 family Coriobacteriaceae 0 10381 1 6 84107 376 Collinsella genus 0 5843 1 2 102106 12 1 74426 5831 species Collinsella aerofaciens 0 1 84113 no rank 0 2572 2572 0 Coriobacteriaceae bacterium 68-1-3 species 1531429 1 2 33870 2 1 1590 0 Coriobacterium genus 1588 Coriobacterium glomerans species 0 1 33871 3 7 84992 1143 1 class Acidimicrobiia 0 58 6 84993 1140 1 Acidimicrobiales order 0 family 0 886 2 2448023 886 1 genus Ilumatobacter 0 19 2 682522 0 species Ilumatobacter coccineus 867 467094 1 196 1 family Acidimicrobiaceae 0 6 3 84994 190 1 genus Acidimicrobium 0 8 2 53634 53635 1 0 Acidimicrobium ferrooxidans species 182 0 no rank 655 1752188 4 225 Actinobacteria bacterium IMCC25003 species 0 1 1848255 1848755 1 224 0 species Actinobacteria bacterium IMCC26077 0 Actinobacteria bacterium IMCC26103 species 120 1848756 1 86 0 Actinobacteria bacterium IMCC19121 species 1848754 1 class Thermoleophilia 0 1314 1 5 1497346 4 588673 4 59 0 order Solirubrobacterales 1 1310 3 320583 14 Conexibacteraceae family 0 1251 1 2 191494 52 genus Conexibacter 0 1237 1 1 191495 1185 species Conexibacter woesei 0 0 no rank 391 1859062 2 2 262406 13 Thermobaculum genus 0 391 1 378 Thermobaculum terrenum species 0 1 166501 147 1798711 47302 clade 0 47302 1 Cyanobacteria phylum 0 14 147 1117 1 20999 0 Synechococcales order 207 1890424 57 1213 5 2 0 Prochloraceae family 1 2513 5 4 1218 2511 1 genus Prochlorococcus 0 1855 species Prochlorococcus marinus 0 1 1219 2 2627481 651 no rank 0 1 1501269 Prochlorococcus sp. MIT 0801 species 0 460 0 Prochlorococcus sp. MIT 0604 species 191 1501268 1 55 6 1890438 2410 1 family Leptolyngbyaceae 0 5 47251 10 Leptolyngbya genus 0 2355 1 1184 1 599 0 Leptolyngbya boryana species 1746 0 no rank 2650499 3 1072 0 Leptolyngbya sp. O-77 species 1080068 1 241 Leptolyngbya sp. PCC 7376 species 0 1 111781 433 0 Leptolyngbya sp. NIES-3755 species 1752064 1 1 2303730 446 family 0 446 genus 0 1 170610 1209493 1 0 Halomicronema hongdechloris species 446 460 1 family Acaryochloridaceae 0 1 3 1890429 1 155977 2 1 459 0 genus Acaryochloris 0 Acaryochloris marina species 458 155978 1 5 1890428 1 Merismopediaceae family 0 796 1 4 1142 40 genus Synechocystis 0 795 1 755 no rank 0 3 2640012 1148 1 252 0 Synechocystis sp. PCC 6803 species 1147 1 0 Synechocystis sp. PCC 6714 species 251 species Synechocystis sp. IPPAS B-1465 0 252 1 2116702 13825 1 Synechococcaceae family 0 91 34 1890426 44 3 167375 3115 1 Cyanobium genus 0 1606 0 species Cyanobium gracile 59930 1 1 2627006 no rank 0 1465 1465 Cyanobium sp. NIES-981 species 0 1 1851505 26 1129 172 Synechococcus genus 0 10080 1 Synechococcus elongatus species 0 326 1 32046 207 Synechococcus lividus species 0 1 33070 23 2626047 no rank 0 9375 1 195498 Synechococcus sp. PCC 7117 species 0 144 Synechococcus sp. PCC 8807 species 0 214 1 195248 374981 1 0 species Synechococcus sp. PCC 7003 235 408 Synechococcus sp. KORDI-52 species 0 1 585425 1 1916956 520 Synechococcus sp. SynAce01 species 0 32051 1 566 0 species Synechococcus sp. WH 7803 64471 1 0 Synechococcus sp. CC9311 species 213 84588 1 0 Synechococcus sp. WH 8102 species 496 0 species Synechococcus sp. WH 8109 539 166314 1 412 Synechococcus sp. NIES-970 species 0 1 1827144 0 Synechococcus sp. CC9902 species 203 316279 1 0 Synechococcus sp. PCC 6312 species 227 195253 1 1173263 1 0 species Synechococcus sp. PCC 7502 265 1 321332 667 species Synechococcus sp. JA-2-3B'a(2-13) 0 172 0 species Synechococcus sp. PCC 73109 374982 1 0 Synechococcus sp. RCC307 species 664 316278 1 1 1280380 Synechococcus sp. KORDI-100 species 0 301 110662 1 0 species Synechococcus sp. CC9605 412 0 species Synechococcus sp. JA-3-3Ab 986 321327 1 1 585423 species Synechococcus sp. KORDI-49 0 654 species Synechococcus sp. PCC 7002 0 222 1 32049 1 1350461 Synechococcus sp. UTEX 2973 species 0 349 1 29410 506 Synechococcus sp. WH 8103 species 0 0 genus Dactylococcopsis 1 336 13034 2 4 0 Dactylococcopsis salina species 332 292566 1 4 2 146785 203 1 genus Thermosynechococcus 0 146786 1 199 0 Thermosynechococcus elongatus species 1890436 2 342 0 family 342 1 Pseudanabaena genus 0 17 2 1152 0 no rank 325 2593292 1 82654 1 325 0 species Pseudanabaena sp. PCC 7367 0 no rank 244 1983111 1 cyanobacterium endosymbiont of Epithemia turgida species 0 244 1 718217 0 Pleurocapsales order 1 1245 52604 5 4 0 family Hyellaceae 1 324 1890500 2 7 44474 1 317 0 genus 54308 1 0 species Pleurocapsa minor 317 0 family 917 1890498 2 102115 2 0 genus 917 1 102116 species Stanieria cyanosphaera 0 376 2642663 1 0 no rank 541 1807358 1 0 species Stanieria sp. NIES-3757 541 38 33 1161 11428 1 Nostocales order 0 6456 1 family Nostocaceae 0 14 17 1162 10 1177 19 Nostoc genus 0 4161 1 1306274 1 724 0 species Nostoc flagelliforme Nostoc punctiforme species 0 789 1 272131 2593658 7 2629 0 no rank 1 1751286 362 species Nostoc sp. NIES-3756 0 1 1618022 477 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' species 0 Nostoc sp. PCC 7120 species 0 313 1 103690 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species 454 1261031 1 320 Nostoc sp. CENA543 species 0 1 1869241 317936 1 290 0 Nostoc sp. PCC 7107 species 1 28072 413 species Nostoc sp. PCC 7524 0 0 genus 677 264688 2 1 264691 species Trichormus variabilis 0 363 1 1164 314 Trichormus azollae species 0 1 4 1163 1604 1 Anabaena genus 0 1165 1 0 species Anabaena cylindrica 468 2619674 2 0 no rank 1135 551 0 Anabaena sp. WA102 species 1647413 1 1 46234 584 Anabaena sp. 90 species 0 2 3 1185 843 1 family Rivulariaceae 0 6 373984 2 1 841 0 genus Rivularia 835 0 no rank 2676603 1 species Rivularia sp. PCC 7116 0 835 1 373994 8 2661849 family 0 3143 1186 8 13 0 Calothrix genus 1 3143 445 0 species Calothrix parietina 32054 1 0 no rank 2685 2619626 6 99598 1 294 0 species Calothrix sp. PCC 7507 0 species Calothrix sp. NIES-2098 690 1954171 1 1 2005462 species Calothrix sp. NIES-3974 0 303 1 2005469 579 Calothrix sp. NIES-4071 species 0 0 Calothrix sp. NIES-4101 species 520 2005461 1 1 1337936 Calothrix sp. 336/3 species 0 299 1 498 0 family Hapalosiphonaceae 2 1892263 3 2 2 1190 496 1 Fischerella genus 0 494603 1 0 no rank 494 1 1752063 species Fischerella sp. NIES-3754 0 494 no rank 0 450 1 1219117 450 species Nostocales cyanobacterium HT-58-2 0 1 1940762 1719 1 Gloeobacteria class 0 18 6 307596 0 order Gloeobacterales 1 1701 307595 5 34 4 1890422 13 family Gloeobacteraceae 0 1667 1 3 33071 16 genus Gloeobacter 0 1654 1 33072 1 991 0 species Gloeobacter violaceus 647 0 species Gloeobacter kilaueensis 1416614 1 1301283 41 11379 0 subclass 60 1150 17 1 4685 0 order Oscillatoriales family Oscillatoriaceae 0 1628 1 5 1892254 6 392 genus 0 1 1155738 0 Moorea producens species 392 1155739 1 1158 3 11 0 genus Oscillatoria 1 1230 species Oscillatoria nigro-viridis 0 576 1 482564 Oscillatoria acuminata species 0 643 1 118323 2 1892251 3 family Coleofasciculaceae 0 1075 1 1 63132 genus 0 1072 no rank 0 1072 1 2648775 1072 0 species Geitlerinema sp. PCC 7407 1173025 1 2 1892255 11 family Gomontiellaceae 0 498 1 0 genus 487 241421 1 241425 1 487 0 species Crinalium epipsammum 4 1892249 3 1 530 0 Cyanothecaceae family 1 526 0 genus Cyanothece 23 43988 2 2649277 1 503 0 no rank 503 0 species Cyanothece sp. PCC 7425 395961 1 4 1892252 family 0 894 1 366 0 genus Trichodesmium 1 1205 2 1 1206 species Trichodesmium erythraeum 0 365 44471 2 7 0 Microcoleus genus 1 528 2642155 1 0 no rank 521 1173027 1 0 species Microcoleus sp. PCC 7113 521 7 1118 24 1 6694 0 Chroococcales order 10 8 1890464 1956 1 Chroococcaceae family 0 292 1 genus Gloeocapsa 0 8 2 102231 1 2623012 284 no rank 0 1 1173026 Gloeocapsa sp. PCC 7428 species 0 284 2 268175 1 Chondrocystis genus 0 390 1 2648896 1 389 0 no rank 389 0 species Chondrocystis sp. NIES-4102 2005460 1 19 669357 3 1 1264 0 Geminocystis genus 0 no rank 1245 2625037 2 588 0 Geminocystis sp. NIES-3709 species 1617448 1 1 1615909 657 species Geminocystis sp. NIES-3708 0 1 3 1890452 1081 1 family Cyanobacteriaceae 0 3 2 102234 1080 1 genus Cyanobacterium 0 379064 1 0 species Cyanobacterium aponinum 1077 1890450 8 0 family 2543 0 genus 917 28070 2 2546359 1 0 species 505 1 497965 strain Cyanothece sp. PCC 7822 0 505 2546356 1 0 species 412 1 65393 412 Cyanothece sp. PCC 7424 strain 0 no rank 0 439 2 92682 genus Halothece 0 439 1 2 76023 5 434 no rank 0 1 2632878 434 0 species Halothece sp. PCC 7418 65093 1 142 genus 0 1 1453359 713887 1 0 Candidatus Atelocyanobacterium thalassa species 142 2546365 2 707 0 genus 2546366 2 707 0 species 1 395962 369 Cyanothece sp. PCC 8802 strain 0 0 Cyanothece sp. PCC 8801 strain 338 41431 1 genus 0 338 1 263510 0 species 338 2546360 1 43989 1 0 Cyanothece sp. ATCC 51142 strain 338 0 Microcystaceae family 1 1107 1890449 4 16 1 1091 0 Microcystis genus 3 1125 3 2643300 1 384 0 no rank 384 species Microcystis sp. MC19 0 1 1967666 1 1126 Microcystis aeruginosa species 0 704 3 1890505 order 0 274 2 3 1890528 274 1 Chroococcidiopsidaceae family 0 272 1 genus Chroococcidiopsis 0 8 2 54298 0 Chroococcidiopsis thermalis species 264 54299 1 8 100 544448 27445 1 phylum Tenericutes 0 38 31969 96 1 24541 0 Mollicutes class 13 43 2085 8643 1 order Mycoplasmatales 0 8630 1 Mycoplasmataceae family 0 45 42 2092 0 genus 532 2129 2 species Ureaplasma urealyticum 0 250 1 2130 282 species Ureaplasma parvum 0 1 134821 2744 0 genus 2767358 12 1 29555 species Mycoplasma canis 0 154 1 171284 species Mycoplasma cynos 0 248 1 28903 506 species Mycoplasma bovis 0 1 2109 species Mycoplasma synoviae 0 152 255 0 species Mycoplasma arginini 2094 1 164 0 Mycoplasma bovirhinis species 29553 1 1 2113 species Mycoplasma californicum 0 127 294 0 species Mycoplasma agalactiae 2110 1 276 0 Mycoplasma fermentans species 2115 1 1 2112 173 Mycoplasma bovigenitalium species 0 2107 1 0 Mycoplasma pulmonis species 223 1 48003 172 Mycoplasma pullorum species 0 genus Mycoplasma 0 5309 1 27 2093 81 1 171632 species Mycoplasma ovis 0 62 1 2123 189 species Mycoplasma putrefaciens 0 231 Mycoplasma mobile species 0 1 2118 321 species Mycoplasma hominis 0 1 2098 51365 1 292 0 species Mycoplasma yeatsii 1 45362 species Mycoplasma bovoculi 0 131 65123 1 0 Mycoplasma wenyonii species 45 no rank 0 399 1 2683645 1 1749074 399 Mycoplasma sp. (ex Biomphalaria glabrata) species 0 984991 1 0 Mycoplasma parvum species 29 Mycoplasma hyopneumoniae species 0 141 1 2099 Mycoplasma pneumoniae species 0 29 1 2104 48 Mycoplasma genitalium species 0 1 2097 2128 1 122 0 species Mycoplasma flocculare 1 29501 species Mycoplasma haemofelis 0 26 species Mycoplasma crocodyli 0 229 1 50052 species group 0 1735 3 656088 Mycoplasma leachii species 0 452 1 2105 817 0 species Mycoplasma mycoides 2102 1 466 Mycoplasma capricolum species 0 1 2095 185 Mycoplasma penetrans species 0 1 28227 1 29554 169 Mycoplasma canadense species 0 0 species Mycoplasma gallisepticum 175 2096 1 0 Mycoplasma dispar species 133 86660 1 136241 1 73 0 Mycoplasma haemocanis species 57372 1 166 0 species Mycoplasma suis Mycoplasma hyorhinis species 0 180 1 2100 118 Mycoplasma arthritidis species 0 1 2111 0 order Acholeplasmatales 1 4177 186329 13 11 0 family Acholeplasmataceae 1 4166 2146 12 14 28 6 33926 1155 1 Candidatus Phytoplasma genus 0 1 85630 248 species group 0 species Candidatus Phytoplasma mali 0 248 1 37692 85620 3 621 0 species group species Onion yellows phytoplasma 0 216 1 100379 202462 1 0 Maize bushy stunt phytoplasma species 233 172 Aster yellows witches'-broom phytoplasma species 0 1 229545 258 species group 0 1 85632 species Candidatus Phytoplasma australiense 0 258 1 59748 genus Acholeplasma 0 2997 1 5 2147 71 650 0 Acholeplasma laidlawii species 2148 1 35623 1 738 0 Acholeplasma oculi species 61635 1 771 0 species Acholeplasma brassicae 1 38986 Acholeplasma palmae species 0 767 12 186328 39 1 11683 0 Entomoplasmatales order 6 14 33925 4406 1 family Entomoplasmataceae 0 genus Mesoplasma 0 3171 1 8 46239 38 1 2151 562 species Mesoplasma florum 0 0 Mesoplasma tabanidae species 272 219745 1 0 species Mesoplasma lactucae 752 138853 1 291 0 species Mesoplasma coleopterae 324078 1 266 species Mesoplasma entomophilum 0 1 2149 224 0 species Mesoplasma chauliocola 216427 1 766 Mesoplasma syrphidae species 0 1 225999 46238 5 20 0 genus Entomoplasma 1 1229 316 0 species Entomoplasma luminosum 214888 1 289 species Entomoplasma somnilux 0 1 215578 species Entomoplasma freundtii 0 250 1 74700 354 Entomoplasma melaleucae species 0 1 81459 0 family Spiroplasmataceae 1 7265 2131 24 16 1 7249 0 Spiroplasma genus 252 2132 23 216935 1 0 Spiroplasma culicicola species 560 1 2136 Spiroplasma monobiae species 0 238 1 216936 species Spiroplasma diminutum 0 366 0 species Spiroplasma kunkelii 337 47834 1 354 Spiroplasma corruscae species 0 1 216934 1 1114980 309 Spiroplasma atrichopogonis species 0 2139 1 257 0 species Spiroplasma clarkii species Spiroplasma sabaudiense 0 379 1 216944 Spiroplasma litorale species 0 336 1 216942 1 2137 Spiroplasma apis species 0 143 299 0 Spiroplasma mirum species 2144 1 2 2637901 502 no rank 0 species Spiroplasma sp. TU-14 0 251 1 1898044 251 0 Spiroplasma sp. NBRC 100390 species 1914410 1 2133 1 296 0 species Spiroplasma citri 216938 1 218 0 Spiroplasma helicoides species 1 216946 359 species Spiroplasma turonicum 0 263 Spiroplasma taiwanense species 0 1 2145 315358 1 0 Spiroplasma eriocheiris species 512 366 0 species Spiroplasma chrysopicola 216933 1 340 species Spiroplasma floricola 0 1 216937 354 0 Spiroplasma cantharicola species 362837 1 209 Spiroplasma syrphidicola species 0 1 216945 1 2799557 941 no rank 0 0 genus 941 1912503 1 941 0 no rank 2624196 1 1 1541959 941 Candidatus Izimaplasma sp. HR1 species 0 2 713063 no rank 0 1955 1 1911683 985 species Tenericutes bacterium MZ-XQ 0 0 Tenericutes bacterium MO-XQ species 970 1911684 1 93 1783257 84639 clade 0 21 204428 phylum 0 1618 1 1618 0 Chlamydiia class 22 204429 21 1 913 0 Chlamydiales order 15 51291 14 3 13 809 898 1 Chlamydiaceae family 0 0 no rank 895 1113537 12 12 810 3 Chlamydia genus 0 895 1 83558 1 34 0 Chlamydia pneumoniae species 51 species Chlamydia abortus 0 1 83555 100 Chlamydia muridarum species 0 1 83560 1 83554 130 species Chlamydia psittaci 0 species Chlamydia suis 0 94 1 83559 75 Chlamydia avium species 0 1 1457141 1 1457153 Chlamydia gallinacea species 0 81 Chlamydia felis species 0 92 1 83556 813 1 0 Chlamydia trachomatis species 89 64 0 species Chlamydia caviae 83557 1 82 Chlamydia pecorum species 0 1 85991 1 683 0 order Parachlamydiales 2 1963360 6 92712 1 0 family 91 1 34093 genus 0 91 1 83561 Simkania negevensis species 0 91 248 family 0 1 92714 1 71666 genus 0 248 248 0 species Waddlia chondrophila 71667 1 family Parachlamydiaceae 0 342 1 3 92713 1 83551 1 0 genus 159 1 83552 159 Parachlamydia acanthamoebae species 0 182 0 genus 282132 1 389348 1 0 species Candidatus Protochlamydia naegleriophila 182 256845 3 0 phylum 3672 28 3 1313211 3672 1 Lentisphaeria class 0 0 Victivallales order 1 3644 278082 2 191 no rank 0 3453 1 1674876 0 Victivallales bacterium CCUG 44730 species 3453 2094242 1 74201 29 4 0 phylum Verrucomicrobia 1 65335 203494 6 5 0 Verrucomicrobiae class 1 57101 order Verrucomicrobiales 0 57096 1 5 48461 61 family Akkermansiaceae 0 57035 1 4 1647988 39 3 239934 17 genus Akkermansia 0 56996 1 2660 0 species Akkermansia glycaniphila 1679444 1 0 Akkermansia muciniphila species 54319 239935 1 37 12 414999 5324 1 class Opitutae 0 4 415001 10 Puniceicoccales order 0 472 1 0 family Puniceicoccaceae 1 462 415002 3 2 genus Coraliomargarita 0 460 1 2 442430 6 1 395922 454 species Coraliomargarita akajimensis 0 4815 1 order Opitutales 0 85 7 415000 1 4730 0 Opitutaceae family 72 134623 6 7 178440 2 1 1189 0 Opitutus genus 1182 species Opitutus terrae 0 1 107709 0 no rank 2060 278955 1 1 794903 Opitutaceae bacterium TAV5 species 0 2060 1961799 2 16 0 Lacunisphaera genus 1 1409 1 1838286 1393 species Lacunisphaera limnophila 0 1 433 0 Methylacidiphilae class 1 1955630 6 0 Methylacidiphilales order 1 432 717963 5 1 431 1 family Methylacidiphilaceae 0 2 4 717964 1 429 0 Methylacidiphilum genus 3 511745 3 511746 1 145 0 Methylacidiphilum infernorum species 0 species Methylacidiphilum fumariolicum 281 591154 1 134549 2 87 0 class 2 134550 3 Candidatus Xiphinematobacter genus 0 87 1 no rank 0 84 1 2648876 1704307 1 0 species Candidatus Xiphinematobacter sp. Idaho Grape 84 no rank 0 2386 2 417295 2026799 1 1304 0 Verrucomicrobia bacterium species 0 Verrucomicrobia bacterium IMCC26134 species 1082 1637999 1 1160 phylum 0 5 134625 1921781 5 18 0 Kiritimatiellae class 1 1160 4 4 1921782 1142 1 Kiritimatiellales order 0 1138 1 family Kiritimatiellaceae 0 2 3 1921783 29 2 1921784 1136 1 genus Kiritimatiella 0 1 1307763 1107 species Kiritimatiella glycovorans 0 0 Planctomycetes phylum 1 12854 203682 35 2 433 0 class 2517206 3 5 1127829 3 1 433 0 Candidatus Brocadiales order 2 1127830 2 Candidatus Brocadiaceae family 0 428 1 1 380738 genus 0 426 174633 1 0 Candidatus Kuenenia stuttgartiensis species 426 203683 24 59 0 Planctomycetia class 1 10270 7 2691356 2976 order 0 Isosphaeraceae family 0 2976 1 7 1763524 44 3 127 2 1 762 0 genus Isosphaera 759 0 Isosphaera pallida species 128 1 2 1763521 9 genus Paludisphaera 0 1367 1 species Paludisphaera borealis 0 1358 1 1387353 1 803 0 Singulisphaera genus 2 466152 2 0 Singulisphaera acidiphila species 801 466153 1 2691355 3 1148 0 order 0 Gemmataceae family 1 1148 1914233 3 4 3 113 2 1 1144 0 Gemmata genus 1141 0 no rank 2622970 1 1141 Gemmata sp. SH-PL17 species 0 1 1630693 160 112 10 1 4757 0 Planctomycetales order 35 9 126 4597 1 family Planctomycetaceae 0 2 1936111 8 Fuerstia genus 0 891 1 1 1891926 883 species Fuerstia marisgermanicae 0 1649480 2 4 0 Planctopirus genus 1 382 120 1 0 species Planctopirus limnophila 378 genus Planctomyces 0 2601 1 3 118 49 2 2648843 no rank 0 2552 0 species Planctomyces sp. SH-PL62 1605 1636152 1 947 0 species Planctomyces sp. SH-PL14 1632864 1 genus 0 688 1 1649490 688 species Rubinisphaera brasiliensis 0 1 119 0 order 1330 2691354 3 1027 family 0 2 2691357 481 0 genus 123 1 481 0 Pirellula staleyi species 125 1 265488 1 0 genus 546 0 Rhodopirellula baltica species 546 265606 1 2691358 1 0 family 303 303 genus 0 1 1676125 1331910 1 303 0 Thermogutta terrifontis species 1 2149 0 class Phycisphaerae 5 666505 7 0 order Phycisphaerales 1 1293 666506 4 32 0 Phycisphaeraceae family 1 1261 666507 3 16 2 666508 3 genus Phycisphaera 0 1245 1 547188 1 1242 0 species Phycisphaera mikurensis 0 order 851 2483366 2 851 0 family 2483367 2 851 0 genus 2483368 2 0 Phycisphaerae bacterium L21-RPul-D3 species 349 1940790 1 0 Phycisphaerae bacterium ST-PulAB-D4 species 502 1941349 1 20 57723 phylum 0 7591 27 204432 17 1 7073 0 class Acidobacteriia 69 4 332160 1589 1 order Solibacterales 0 1 1520 0 Solibacteraceae family 15 332161 3 332162 2 3 0 genus Candidatus Solibacter 1 1505 332163 1 1502 0 Candidatus Solibacter usitatus species 12 204433 58 order Acidobacteriales 0 5457 1 57 11 204434 5399 1 family Acidobacteriaceae 0 658061 2 9 0 Candidatus Koribacter genus 1 959 species Candidatus Koribacter versatilis 0 950 1 658062 3 940557 14 Granulicella genus 0 1613 1 758 0 Granulicella mallensis species 940614 1 0 Granulicella tundricola species 841 940615 1 33973 2 1 0 genus Acidobacterium 1 1070 33075 1 1069 0 Acidobacterium capsulatum species 0 genus Terriglobus 1 1700 392733 3 16 Terriglobus roseus species 0 1059 1 392734 0 species Terriglobus saanensis 625 870903 1 518 1 Blastocatellia class 0 5 3 1562566 458032 2 9 0 genus Chloracidobacterium 1 513 1 458033 504 Chloracidobacterium thermophilum species 0 2323 2 0 no rank 490 490 0 clade 1783234 2 179 0 phylum 95818 1 179 no rank 0 1 1895827 179 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 1 2056494 clade 0 311 1 95901 1 2497643 class 0 311 2497644 1 311 0 order 1 2497645 311 family 0 genus 0 311 1 1551504 673862 1 0 Candidatus Babela massiliensis species 311 0 phylum 2154 200930 9 1 2154 0 class Deferribacteres 3 68337 9 7 191393 8 1 2151 0 order Deferribacterales 7 191394 5 Deferribacteraceae family 0 2144 1 773 0 genus 545865 1 773 species Calditerrivibrio nitroreducens 0 1 477976 345 0 genus 2351 1 1 2352 345 Flexistipes sinusarabici species 0 435 1 Deferribacter genus 0 1 2 53572 1 197162 434 Deferribacter desulfuricans species 0 117999 2 1 0 genus Denitrovibrio 1 586 0 species Denitrovibrio acetiphilus 585 118000 1 163 0 phylum 2138240 2 2 2138243 163 class 0 163 0 order 2138246 2 1 2138247 2 1 163 0 Coprothermobacteraceae family 1 68335 genus 0 162 species Coprothermobacter proteolyticus 0 162 1 35786 1695 0 phylum 74152 7 1 99260 255 no rank 0 0 uncultured Termite group 1 bacterium species 255 167965 1 1242 class 0 4 447830 1783344 4 1242 0 order 1783343 4 1 0 Endomicrobiaceae family 1 1242 1 3 1408194 1241 1 Endomicrobium genus 0 1 1408204 Candidatus Endomicrobium trichonymphae species 0 287 1 1408281 species Endomicrobium proavitum 0 953 2 641853 198 class 0 198 1 Elusimicrobiales order 0 2 2 641854 1 641876 196 family 0 genus 0 196 1 423604 1 423605 species Elusimicrobium minutum 0 196 40117 13 3969 0 phylum 6 13 203693 3969 1 class Nitrospira 0 12 189778 33 Nitrospirales order 0 3963 1 family Nitrospiraceae 0 3930 1 11 189779 11 28261 1 359 0 genus species Thermodesulfovibrio yellowstonii 0 359 1 28262 2 179 4 1 1046 0 genus Leptospirillum 1 261386 303 species group 0 303 0 species Leptospirillum ferriphilum 178606 1 1 261385 species group 0 281 1 1660083 281 Leptospirillum sp. Group II 'CF-1' species 0 species group 0 460 1 655606 1 180 460 species Leptospirillum ferrooxidans 0 1 2514 0 genus Nitrospira 23 1234 5 0 Nitrospira moscoviensis species 968 42253 1 1 1715989 Candidatus Nitrospira inopinata species 0 450 330214 1 0 Nitrospira defluvii species 512 561 0 Nitrospira japonica species 1325564 1