members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 45294 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 31 30179707 4681 97 Bacteria superkingdom 30086892 2 1 0 4391 phylum 415 2138240 0 2 2 0 2138243 415 class 0 2 order 2138246 415 2 0 2138247 415 family 415 68335 Coprothermobacter genus 1 2 1 0 0 1 species Coprothermobacter proteolyticus 414 35786 0 1 2001 1010 phylum Proteobacteria 1224 1795665 351 0 1 28216 365986 984 Betaproteobacteria class 206351 32578 order Neisseriales 394 37 0 1 family Chromobacteriaceae 254 1499392 15123 0 1 13 2366 168470 28 Laribacter genus 2 1 0 0 1 species Laribacter hongkongensis 2338 168471 0 1 2 8 genus Aquaspirillum 187 1582 1 0 1574 2620219 no rank 1 0 1938604 1574 species Aquaspirillum sp. LM1 no rank 90153 7631 0 4 535 7631 125 Chromobacterium genus 4 0 1 Chromobacterium violaceum species 2077 536 0 1 2641838 1989 no rank 1 0 2059672 1989 species Chromobacterium sp. ATCC 53434 1 0 3440 1108595 species Chromobacterium vaccinii 1 0 1 0 2 15 genus Pseudogulbenkiania 2266 568394 0 1 no rank 2251 2642558 Pseudogulbenkiania sp. NH8B species 748280 2251 0 1 2 0 1 885864 1024 15 Jeongeupia genus 0 1 no rank 1009 2619593 0 1 Jeongeupia sp. USM3 species 1906741 1009 17061 481 Neisseriaceae family 75 23 1 0 2 0 1 1193515 542 1 Snodgrassella genus 1 0 1196083 541 species Snodgrassella alvi 71 398 Simonsiella genus 1 2 0 1 species Simonsiella muelleri 397 72 0 1 1 0 12 247 Neisseria genus 12563 482 species Neisseria weaveri 28091 545 0 1 0 1 Neisseria mucosa species 930 488 994 495 species Neisseria elongata 1 0 501 485 Neisseria gonorrhoeae species 1 0 0 1 Neisseria zoodegmatis species 813 326523 2504 2623750 no rank 2 0 1 0 1853276 932 Neisseria sp. 10022 species 0 1 species Neisseria sp. KEM232 1572 655307 species Neisseria lactamica 1736 486 0 1 490 907 species Neisseria sicca 1 0 2528 487 species Neisseria meningitidis 1 0 1 0 1853278 858 species Neisseria sp. 10023 no rank 313 421605 0 1 1 0 2052837 313 species Neisseriaceae bacterium DSM 100970 1758 59 74 Vitreoscilla genus 3 1 0 1231 63 Vitreoscilla filiformis species 1 0 1 0 2627922 453 no rank 453 96942 Vitreoscilla sp. C1 species 1 0 2 1 0 1412 538 17 genus Eikenella 1 0 539 1395 species Eikenella corrodens 44 0 1 32003 14581 104 Nitrosomonadales order 1 0 5 38 family Gallionellaceae 1756 90627 Gallionella genus 3 841 96 1 0 2 species Gallionella capsiferriformans 838 370405 0 1 2 1 0 877 314343 22 genus Sideroxydans 1 0 63745 855 species Sideroxydans lithotrophicus 4 0 1181 2772226 family 2 0 1 1778653 619 6 Sulfuriferula genus 0 1 no rank 613 2637784 613 1985873 species Sulfuriferula sp. AH1 1 0 562 935200 Sulfuricella genus 3 2 1 0 649841 559 Sulfuricella denitrificans species 1 0 22 Nitrosomonadaceae family 3827 206379 1 0 12 1 0 7 Nitrosomonas genus 15 2525 914 Nitrosomonas europaea species 915 619 0 1 no rank 2609265 741 0 2 species Nitrosomonas sp. AL212 153948 352 0 1 Nitrosomonas sp. Is79A3 species 389 261292 0 1 1 0 373 916 species Nitrosomonas eutropha 392 44577 species Nitrosomonas ureae 1 0 0 1 species Nitrosomonas communis 44574 385 1 0 4 Nitrosospira genus 7 1280 35798 Nitrosospira lacus species 502 1288494 0 1 1 0 416 1231 species Nitrosospira multiformis species Nitrosospira briensis 355 35799 0 1 1 0 14 family Methylophilaceae 22 4490 32011 1 0 3 Methylovorus genus 10 2015 81682 0 1 species Methylovorus glucosotrophus 266009 1176 no rank 829 2634027 0 1 species Methylovorus sp. MP688 829 887061 0 1 476 16 genus Methylophilus 3 2 1 0 2630143 473 no rank 1 0 0 1 species Methylophilus sp. TWE2 1662285 473 404 651 genus Methylobacillus 3 2 0 1 405 648 species Methylobacillus flagellatus 1 0 2 genus Methylotenera 783 359407 1 0 3 0 1 species Methylotenera versatilis 286 1055487 Methylotenera mobilis species 495 359408 0 1 1679002 543 4 genus Candidatus Methylopumilus 3 0 1 442 1581680 species Candidatus Methylopumilus turicensis 1 0 0 1 species Candidatus Methylopumilus planktonicus 97 1581557 2 family Thiobacillaceae 551 2008790 1 0 3 Thiobacillus genus 7 549 919 1 0 2 Thiobacillus denitrificans species 542 36861 0 1 0 1 5 50 family Sterolibacteriaceae 2008793 2672 2 0 1 378210 1045 7 Methyloversatilis genus 1 0 1038 2639971 no rank 1842540 1038 species Methyloversatilis sp. RAC08 1 0 18 Sulfuritalea genus 1054211 1577 0 1 2 0 1 Sulfuritalea hydrogenivorans species 1559 748811 1270 33809 no rank 2 0 species Betaproteobacteria bacterium GR16-43 1904640 1150 0 1 0 1 species beta proteobacterium CB 543913 120 no rank 1836 119066 0 11 genus 1301080 10 0 1 10 1160784 species Candidatus Nasuia deltocephalinicola 1 0 0 1 genus 189384 5 Candidatus Tremblaya princeps species 189385 5 0 1 6 0 1 33055 645 genus Kinetoplastibacterium 5 127 233181 Kinetoplastibacterium blastocrithidii species 1 0 species Candidatus Kinetoplastibacterium desouzaii 994692 81 0 1 species Candidatus Kinetoplastibacterium oncopeltii 95 994696 0 1 33056 294 Candidatus Kinetoplastibacterium crithidii species 1 0 species Candidatus Kinetoplastibacterium galatii 43 994695 0 1 2 0 1 327159 1123 genus Candidatus Accumulibacter 75 1 0 1048 327160 Candidatus Accumulibacter phosphatis species 1 0 1381133 53 genus 0 1 Candidatus Profftella armatura species 669502 53 206389 19306 Rhodocyclales order 357 22 0 1 75787 5189 75 Rhodocyclaceae family 6 0 1 0 1 no rank 986 75788 0 1 species Rhodocyclaceae bacterium 986 1898103 2519 146937 Azospira genus 85 2 1 0 2434 146939 Azospira oryzae species 1 0 0 1 2 genus Aromatoleum 17 551759 1609 551760 1592 species Aromatoleum aromaticum 1 0 373 Zoogloeaceae family 12714 2008794 1 0 12 7815 33057 genus Thauera 175 6 1 0 0 2 no rank 3506 2609274 species Thauera sp. K11 2005884 2036 0 1 Thauera sp. MZ1T species 85643 1470 0 1 Thauera aromatica species 1506 59405 0 1 96773 1264 species Thauera chlorobenzoica 1 0 1364 1134435 species Thauera humireducens 1 0 4526 12960 genus Azoarcus 209 5 1 0 1 0 418699 1241 species Azoarcus olearius Azoarcus sp. SY39 species 2067960 943 0 1 0 2 no rank 2629479 2133 1 0 1246 748247 species Azoarcus sp. KH32C 0 1 species Azoarcus sp. CIB 198107 887 3 0 1 2008795 1046 23 family Azonexaceae 2 0 1 73029 1023 20 genus Dechloromonas 0 1 Dechloromonas aromatica species 1003 259537 Burkholderiales order 3623 295431 80840 1 0 234 119060 104047 family Burkholderiaceae 701 84 0 1 0 1 12 293 genus Paraburkholderia 1822464 13866 1 0 75105 1843 species Paraburkholderia caribensis 311230 732 Paraburkholderia terrae species 1 0 0 1 species Paraburkholderia xenovorans 36873 1278 148447 1215 Paraburkholderia phymatum species 1 0 0 1 species Paraburkholderia sprentiae 1339 948107 1 0 1218 169430 Paraburkholderia hospita species 819 2615204 no rank 1 0 1 0 1926494 819 species Paraburkholderia sp. SOS3 1210 134537 species Paraburkholderia fungorum 1 0 species Paraburkholderia aromaticivorans 2026199 1673 0 1 Paraburkholderia phytofirmans species 261302 1120 0 1 species Paraburkholderia phenoliruptrix 252970 1126 0 1 1 0 4 Polynucleobacter genus 3 1194 44013 570 576611 Polynucleobacter asymbioticus species 1 0 0 1 species Polynucleobacter duraquae 316 1835254 1 0 576610 305 Polynucleobacter necessarius species 1827195 985 genus 1 0 0 1 Burkholderia sp. RPE64 species 758793 985 93217 8639 237 Pandoraea genus 10 0 1 Pandoraea faecigallinarum species 656179 823 0 1 861 93221 Pandoraea pulmonicola species 1 0 1 0 93220 1784 Pandoraea pnomenusa species species Pandoraea thiooxydans 878 445709 0 1 914 93222 species Pandoraea sputorum 1 0 0 1 Pandoraea apista species 93218 709 1 0 906 93219 species Pandoraea norimbergensis 0 1 species Pandoraea vervacti 582 656178 1 0 945 573737 species Pandoraea oxalativorans 106589 16279 genus Cupriavidus 814 9 0 1 2640874 4609 no rank 2 0 0 1 species Cupriavidus sp. USMAHM13 2157 1389192 species Cupriavidus sp. USMAA2-4 2452 876364 0 1 species Cupriavidus necator 106590 3099 0 1 0 1 Cupriavidus pinatubonensis species 1675 248026 1314 119219 species Cupriavidus metallidurans 1 0 1 0 1245 82541 species Cupriavidus gilardii species Cupriavidus basilensis 1426 68895 0 1 0 1 Cupriavidus sp. USMAA1020 species 367825 2097 204 genus Ralstonia 48736 11884 0 1 5 105219 1430 Ralstonia mannitolilytica species 1 0 Ralstonia insidiosa species 1777 190721 0 1 1 0 329 2410 species Ralstonia pickettii 305 6063 Ralstonia solanacearum species 1 0 1 0 41 2988 genus Burkholderia 49863 32008 1 0 2499 28095 Burkholderia gladioli species 1 0 337 2053 species Burkholderia glumae 0 11 no rank 9315 2613784 0 1 species Burkholderia sp. CCGE1003 640512 905 0 1 species Burkholderia sp. Bp7605 1014 1740163 0 1 species Burkholderia sp. Bp5365 649 1740162 1 0 1795043 685 species Burkholderia sp. PAMC 26561 677 1468409 Burkholderia sp. 2002721687 species 1 0 species Burkholderia sp. PAMC 28687 530 1795874 0 1 1 0 416344 879 Burkholderia sp. KJ006 species species Burkholderia sp. YI23 1137 1097668 0 1 Burkholderia sp. RPE67 species 758796 1195 0 1 703 640510 species Burkholderia sp. CCGE1001 1 0 1 0 1678678 941 species Burkholderia sp. HB1 0 7 species group 111527 6220 0 1 species Burkholderia sp. MSMB0266 559 1637837 species Burkholderia oklahomensis 1099 342113 0 1 0 1 Burkholderia sp. MSMB617WGS species 438 1637831 57975 1333 species Burkholderia thailandensis 1 0 0 1 species Burkholderia mallei 13373 444 species Burkholderia sp. MSMB0852 591 1637841 0 1 species Burkholderia pseudomallei 1756 28450 0 1 25762 87882 species group 19 0 1 0 101571 2398 species Burkholderia ubonensis 1 0 60552 1278 Burkholderia vietnamiensis species 292 4175 Burkholderia cepacia species 1 0 727 1207504 species Burkholderia pseudomultivorans 1 0 1 0 578 488732 species Burkholderia diffusa 0 1 Burkholderia pyrrocinia species 585 60550 1 0 488447 1243 species Burkholderia contaminans [Pseudomonas] mesoacidophila species 265293 708 0 1 Burkholderia stabilis species 1385 95485 0 1 1 0 152480 1008 Burkholderia ambifaria species 700 152500 species Burkholderia dolosa 1 0 1 0 1728 87883 Burkholderia multivorans species 0 1 Burkholderia stagnalis species 941 1503054 species Burkholderia metallica 488729 681 0 1 2008 482957 species Burkholderia lata 1 0 491 488446 species Burkholderia latens 1 0 Burkholderia cenocepacia species 95486 3933 0 1 0 1 species Burkholderia territorii 1503055 658 488731 537 species Burkholderia seminalis 1 0 1026 41899 species Burkholderia plantarii 1 0 0 1 genus 636 2571159 1 0 412963 636 species Paraburkholderia rhizoxinica 1131 family Comamonadaceae 80864 70739 0 1 59 0 1 2 Simplicispira genus 7 352450 988 Simplicispira sp. SC1-8 species 981 2109915 0 1 Polaromonas genus 13 52972 1995 0 1 3 0 1 Polaromonas naphthalenivorans species 216465 935 1 0 1047 2638319 no rank 0 1 Polaromonas sp. JS666 species 296591 1047 174951 3753 genus Ramlibacter 29 2 0 1 0 1 species Ramlibacter tataouinensis 94132 3724 1436289 695 5 genus Candidatus Symbiobacter 2 0 1 0 1 species Candidatus Symbiobacter mobilis 1436290 690 3 1 0 2603 219181 14 Ottowia genus 0 1 no rank 2645081 1391 1658672 1391 Ottowia sp. oral taxon 894 species 1 0 1198 2109914 Ottowia sp. KADR8-3 species 1 0 1 0 3 genus Limnohabitans 7 1891 665874 2 0 1884 2626134 no rank 650 1678128 Limnohabitans sp. 63ED37-2 species 1 0 Limnohabitans sp. 103DPR2 species 1234 1678129 0 1 4 1 0 4167 47420 61 genus Hydrogenophaga 0 2 no rank 2763 2610897 Hydrogenophaga sp. PBC species 1682 795665 0 1 1 0 1081 1842537 Hydrogenophaga sp. RAC07 species 0 1 Hydrogenophaga crassostreae species 1763535 1343 1276 364316 26 genus Verminephrobacter 2 1 0 364317 1250 Verminephrobacter eiseniae species 1 0 5 0 1 28065 6431 110 Rhodoferax genus 1050 81479 Rhodoferax antarcticus species 1 0 0 1 species Rhodoferax koreense 1842727 1949 192843 1412 Rhodoferax ferrireducens species 1 0 0 1 Rhodoferax saidenbachensis species 1484693 1910 1843 2678886 genus 1 0 1 0 2116657 1843 Melaminivora sp. SC2-7 species 5 1 0 8214 80865 287 genus Delftia 1732 80866 Delftia acidovorans species 1 0 2613839 3892 no rank 2 0 0 1 Delftia sp. HK171 species 1920191 1964 0 1 Delftia sp. Cs1-4 species 1928 742013 species Delftia tsuruhatensis 180282 2303 0 1 1 0 4 Comamonas genus 31 6927 283 Comamonas serinivorans species 1082851 1265 0 1 1 0 3641 285 species Comamonas testosteroni 225992 1990 Comamonas kerstersii species 1 0 2 0 1 1649468 1199 genus Melaminivora 30 no rank 2641902 1169 0 1 2109913 1169 Melaminivora sp. SC2-9 species 1 0 18 genus Diaphorobacter 238749 1167 0 1 2 1 0 1546149 1149 species Diaphorobacter polyhydroxybutyrativorans genus Variovorax 245 8946 34072 1 0 5 no rank 2820 663243 0 2 Variovorax sp. PAMC 28711 species 1795631 1007 0 1 0 1 Variovorax sp. PMC12 species 1813 2126319 species Variovorax boronicumulans 1820 436515 0 1 4061 34073 Variovorax paradoxus species 1 0 1 genus Alicycliphilus 201096 2220 0 1 2 179636 2219 Alicycliphilus denitrificans species 1 0 0 2 genus 2195 2490452 1458425 790 species Comamonadaceae bacterium A1 1 0 1 0 1405 1458426 Comamonadaceae bacterium B1 species 12916 13098 676 Acidovorax genus 9 0 1 1710 80867 species Acidovorax avenae 1 0 species Acidovorax ebreus 721785 1213 0 1 0 4 no rank 2684926 7015 Acidovorax sp. KKS102 species 2358 358220 0 1 1407 232721 Acidovorax sp. JS42 species 1 0 1 0 1842533 2183 species Acidovorax sp. RAC01 1 0 1067 1858609 Acidovorax sp. T1 species species Acidovorax citrulli 80869 1397 0 1 species Acidovorax sp. NA3 553814 1087 0 1 0 1 42 Alcaligenaceae family 477 506 58260 0 1 genus 1100891 181 0 1 species Paenalcaligenes hominis 643674 181 2 0 1 1921582 1730 56 genus Orrella species Orrella dioscoreae 1674 1851544 0 1 genus 495 90243 0 1 species Oligella urethralis 495 90245 0 1 1742 290425 Advenella genus 2 3 1 0 1 0 861 310575 species Advenella kashmirensis Advenella mimigardefordensis species 302406 879 0 1 Alcaligenes genus 10 507 2014 0 1 2 0 1 species Alcaligenes faecalis 511 2004 29574 553 1 genus Taylorella 3 0 1 258 29575 species Taylorella equigenitalis 1 0 0 1 Taylorella asinigenitalis species 84590 294 17 0 1 517 25150 944 Bordetella genus 1 0 1628 94624 Bordetella petrii species 1134 1416803 Bordetella genomosp. 9 species 1 0 species Bordetella pseudohinzii 1331258 1461 0 1 1 0 103855 1542 species Bordetella hinzii 1 0 1238 1416806 Bordetella genomosp. 8 species Bordetella pertussis species 520 1252 0 1 1 0 518 2864 species Bordetella bronchiseptica 2214 123899 species Bordetella trematum 1 0 species Bordetella genomosp. 13 463040 1877 0 1 463024 1887 Bordetella genomosp. 6 species 1 0 species Bordetella flabilis 463014 1247 0 1 1539 519 species Bordetella parapertussis 1 0 1 0 1731 463025 species Bordetella bronchialis 0 1 species Bordetella holmesii 35814 620 no rank 2630031 1357 0 1 0 1 species Bordetella sp. H567 1697043 1357 Bordetella avium species 615 521 0 1 1426 359336 Castellaniella genus 58 2 1 0 Castellaniella defragrans species 75697 1368 0 1 0 1 2 2 Basilea genus 1472344 480 species Basilea psittacipulmonis 478 1472345 0 1 genus Achromobacter 853 222 23061 0 1 6 2626865 2170 no rank 1 0 0 1 Achromobacter sp. AONIH1 species 2170 1758194 Achromobacter denitrificans species 4817 32002 0 1 1 0 2143 217204 species Achromobacter insolitus 9586 85698 Achromobacter xylosoxidans species 1 0 0 1 species Achromobacter spanius 3492 217203 951 305976 genus Pusillimonas 6 2 1 0 no rank 945 2640016 0 1 species Pusillimonas sp. T7-7 945 1007105 0 1 16278 224471 no rank 17 0 28067 2170 Rubrivivax genus 44 2 0 1 species Rubrivivax gelatinosus 2126 28068 0 1 Leptothrix genus 39 88 1798 0 1 2 1 0 1759 34029 species Leptothrix cholodnii 1 0 2 Rhizobacter genus 55 1743 212743 946333 1688 species Rhizobacter gummiphilus 1 0 413882 1606 species [Polyangium] brachysporum 1 0 0 1 2 212 genus Mitsuaria 65047 1595 0 1 no rank 2648776 1383 Mitsuaria sp. 7 species 1658665 1383 0 1 2094 32012 20 genus Thiomonas 2 1 0 1 0 926 2074 species Thiomonas intermedia 26 Roseateles genus 2198 93681 1 0 2 1 0 2172 76731 species Roseateles depolymerans 44 genus Methylibium 316612 1533 0 1 2 species Methylibium petroleiphilum 1489 105560 0 1 2 1 0 1541 318147 genus Paucibacter 39 1 0 1502 2642959 no rank species Paucibacter sp. KCTC 42545 1502 1768242 0 1 family Oxalobacteraceae 165 36172 75682 1 0 29 1 0 7 genus Janthinobacterium 124 7379 29580 368607 1915 Janthinobacterium svalbardensis species 1 0 4 0 2610881 4379 no rank 0 1 species Janthinobacterium sp. LM6 1938606 1449 1 0 497 1236179 species Janthinobacterium sp. B9-8 Janthinobacterium sp. Marseille species 375286 663 0 1 1 0 1770 1644131 species Janthinobacterium sp. 1_2014MBL_MicDiv 1 0 55508 961 species Janthinobacterium agaricidamnosum 9562 963 220 Herbaspirillum genus 6 1 0 1 0 1680 80842 species Herbaspirillum rubrisubalbicans 1684 341045 species Herbaspirillum hiltneri 1 0 1 0 1156 2624150 no rank 0 1 Herbaspirillum sp. meg3 species 1156 2025949 1 0 2880 964 Herbaspirillum seropedicae species 1 0 92645 1942 species Herbaspirillum frisingense 1 0 4 genus Collimonas 79 6463 202907 2009 158899 species Collimonas fungivorans 1 0 Collimonas pratensis species 2211 279113 0 1 0 1 Collimonas arenae species 2164 279058 genus Massilia 214 8225 149698 1 0 6 0 1 species Massilia sp. B2 2045208 1145 Massilia putida species 1141883 1569 0 1 2 0 3495 2609279 no rank 2230 1678028 Massilia sp. NR 4-1 species 1 0 1707785 1265 Massilia sp. WG5 species 1 0 Massilia sp. ZMN-3 species 1802 2072590 0 1 69 Herminiimonas genus 1834 303379 1 0 3 1809410 1063 species Herminiimonas arsenitoxidans 1 0 0 1 species Herminiimonas arsenicoxydans 702 204773 Oxalobacter genus 7 846 2544 0 1 2 2537 847 species Oxalobacter formigenes 1 0 0 2 no rank 6312 80841 0 1 Burkholderiales bacterium GJ-E10 species 1469502 825 1834205 5487 Burkholderiales bacterium YL45 species 1 0 class 1807140 2451 0 6 225057 2451 order Acidithiobacillales 15 6 0 1 8 family Acidithiobacillaceae 2436 225058 1 0 5 4 1 0 2428 119977 Acidithiobacillus genus 18 160808 704 species Acidithiobacillus ferrivorans 1 0 Acidithiobacillus caldus species 834 33059 0 1 1 0 920 872 Acidithiobacillus ferrooxidans species 1661 class Gammaproteobacteria 803498 1236 1 0 877 135619 38419 283 order Oceanospirillales 69 0 1 5 1 0 1197 255527 family Saccharospirillaceae 5 3 genus Gynuella 660 1445504 1 0 2 species Gynuella sunshinyii 657 1445505 0 1 1 0 2 Reinekea genus 5 532 230494 Reinekea forsetii species 1336806 527 0 1 116 family Alcanivoracaceae 5905 224372 1 0 9 2 Ketobacter genus 922 2025617 1 0 2 1917421 920 species Ketobacter alkanivorans 1 0 132 Alcanivorax genus 4867 59753 1 0 6 species Alcanivorax xenomutans 952 1094342 0 1 Alcanivorax dieselolei species 1141 285091 0 1 1650 1306787 species Alcanivorax pacificus 1 0 59754 507 species Alcanivorax borkumensis 1 0 1 0 2638842 485 no rank 485 1113728 Alcanivorax sp. NBRC 101098 species 1 0 family 1166 1920240 0 5 261963 1166 13 genus Kangiella 5 0 1 1 0 1561924 232 Kangiella profundi species Kangiella koreensis species 261964 290 0 1 1 0 119 914150 species Kangiella geojedonensis Kangiella sediminilitoris species 512 1144748 0 1 Hahellaceae family 4 1207 224379 1 0 3 93 Hahella genus 158481 1203 0 1 2 Hahella chejuensis species 1110 158327 0 1 5313 135620 123 Oceanospirillaceae family 13 1 0 2 1 0 1685 48075 genus Marinobacterium 5 1821621 1680 species Marinobacterium aestuarii 1 0 1 genus Thalassolituus 571 187492 1 0 2 0 1 Thalassolituus oleivorans species 570 187493 28253 1722 genus Marinomonas 6 4 0 1 466 196814 no rank 1 0 466 400668 species Marinomonas sp. MWYL1 1 0 1 0 119864 391 Marinomonas mediterranea species 936476 859 Marinomonas posidonica species 1 0 genus Oleispira 1 591 188907 1 0 2 0 1 Oleispira antarctica species 590 188908 0 1 2 3 genus Bacterioplanes 1537406 621 1249553 618 Bacterioplanes sanyensis species 1 0 family Halomonadaceae 469 28256 22777 0 1 30 1 0 2 15 genus Cobetia 1228 204286 28258 1213 Cobetia marina species 1 0 404432 1258 25 genus Salinicola 2 0 1 1 0 1771309 1233 Salinicola tamaricis species 376488 1422 111 Halotalea genus 2 0 1 1 0 376489 1311 Halotalea alkalilenta species 42054 1113 2 Chromohalobacter genus 2 0 1 Chromohalobacter salexigens species 1111 158080 0 1 504090 2660 14 Kushneria genus 3 0 1 1 0 157779 1268 Kushneria marisflavi species 1 0 1378 698828 species Kushneria konosiri 0 1 15 genus Halomonas 288 2745 14423 8 0 7627 2609666 no rank 0 1 species Halomonas sp. 'Soap Lake #7' 1962264 961 1 0 637 1610576 Halomonas sp. R57-5 species 1 0 270 1971364 species Halomonas sp. GT 1 0 961 1949203 species Halomonas sp. 'Soap Lake #6' 1 0 1883416 1747 Halomonas sp. 1513 species 0 1 Halomonas sp. KO116 species 893 1504981 1785 2136172 Halomonas sp. SF2003 species 1 0 1 0 373 1118153 species Halomonas sp. GFAJ-1 species Halomonas huangheensis 587 1178482 0 1 species Halomonas aestuarii 1468 1897729 0 1 0 1 Halomonas beimenensis species 1703 475662 0 1 species Halomonas chromatireducens 507626 1127 432 213554 species Halomonas campaniensis 1 0 Halomonas hydrothermalis species 115561 1191 0 1 0 3 no rank 114403 204 1 0 152 235572 genus Candidatus Portiera aleyrodidarum species 91844 152 0 1 genus 114185 11 0 1 species Candidatus Carsonella ruddii 11 114186 0 1 0 1 genus 1495768 41 1 0 41 1495769 Candidatus Evansia muelleri species 1 0 3 Oleiphilaceae family 3 571 191033 1 0 2 Oleiphilus genus 2 568 141450 Oleiphilus messinensis species 141451 566 0 1 64796 135614 834 order Xanthomonadales 54 1 0 Xanthomonadaceae family 776 32033 52619 0 1 39 Stenotrophomonas genus 326 17433 40323 1 0 9 1 0 216778 995 Stenotrophomonas rhizophila species 196198 5028 no rank 4 0 0 1 species Stenotrophomonas sp. MYb57 1370 1827305 1904944 1541 species Stenotrophomonas sp. LM091 1 0 0 1 species Stenotrophomonas sp. WZN-1 1304 2005046 1 0 1793721 813 species Stenotrophomonas sp. KCTC 12332 Stenotrophomonas acidaminiphila species 128780 1768 0 1 933 83617 species Stenotrophomonas nitritireducens 1 0 8383 995085 species group 1 0 0 1 species Stenotrophomonas maltophilia 40324 8383 1 0 2 Xylella genus 2 555 2370 0 1 species Xylella fastidiosa 553 2371 56 genus Pseudoxanthomonas 83618 4240 0 1 3 1 0 415229 1340 Pseudoxanthomonas spadix species 1 0 2844 314722 Pseudoxanthomonas suwonensis species 0 1 17 Xanthomonas genus 1482 338 23895 0 1 Xanthomonas translucens species 343 1955 species group 643453 4484 0 2 3135 346 Xanthomonas citri species 1 0 366648 1349 species Xanthomonas fuscans 1 0 1 0 56458 942 Xanthomonas sacchari species species Xanthomonas oryzae 1395 347 0 1 456 48664 species Xanthomonas fragariae 1 0 1 0 56459 702 Xanthomonas vasicola species 1 0 56460 1307 Xanthomonas vesicatoria species 1630 442694 Xanthomonas perforans species 1 0 species Xanthomonas phaseoli 1985254 985 0 1 1 0 53413 683 species Xanthomonas axonopodis Xanthomonas albilineans species 997 29447 0 1 1 0 366650 1060 species Xanthomonas alfalfae 456327 1073 species Xanthomonas euvesicatoria 1 0 3487 339 Xanthomonas campestris species 1 0 Xanthomonas hortorum species 56454 1257 0 1 1 0 2 9 Luteimonas genus 777 83614 Luteimonas sp. 100111 species 2006110 768 0 1 4943 68 58 Lysobacter genus 5 1 0 1 0 84531 1368 Lysobacter antibioticus species 1 0 262324 1119 Lysobacter gummosus species 0 1 species Lysobacter capsici 1340 435897 1 0 69 1058 Lysobacter enzymogenes species 1775411 11343 214 family Rhodanobacteraceae 14 0 1 13 Dokdonella genus 323413 1271 0 1 2 1258 323415 species Dokdonella koreensis 1 0 4 1 0 5109 231454 93 Dyella genus species Dyella japonica 231455 2024 0 1 1 0 445710 1583 species Dyella thiooxydans 0 1 species Dyella jiangningensis 1379159 1409 1 0 529 2233801 genus 0 1 species Xanthomonadales bacterium D13 529 2021234 2 1 0 1601 242605 Luteibacter genus 44 Luteibacter rhizovicinus species 1557 242606 0 1 2 0 1 75309 1646 genus Rhodanobacter 6 1 0 666685 1640 Rhodanobacter denitrificans species 70411 973 11 genus Frateuria 2 0 1 0 1 Frateuria aurantia species 81475 962 1934945 956 Immundisolibacterales order 5 4 0 1 3 0 1 1934946 951 8 family Immundisolibacteraceae 1934947 943 genus Immundisolibacter 12 2 0 1 0 1 species Immundisolibacter cernigliae 1810504 931 no rank 33811 2524 0 2 1309 1248727 species endosymbiont of unidentified scaly snail isolate Monju 1 0 1215 83406 gamma proteobacterium HdN1 species 1 0 order Aeromonadales 234 135624 43955 0 1 29 28 0 1 84642 43721 548 family Aeromonadaceae 0 1 18 genus Aeromonas 2168 642 36494 species Aeromonas schubertii 1941 652 0 1 species Aeromonas aquatica 1804 558964 0 1 257493 10010 no rank 8 0 707 1920107 species Aeromonas sp. ASNIH7 1 0 0 1 Aeromonas sp. CA23 species 2033032 1502 0 1 Aeromonas sp. ASNIH5 species 1259 1758179 1636609 1722 Aeromonas sp. ASNIH4 species 1 0 species Aeromonas sp. CU5 2033033 1295 0 1 1226 1636606 species Aeromonas sp. ASNIH1 1 0 1 0 1180 1636607 species Aeromonas sp. ASNIH2 1636608 1119 species Aeromonas sp. ASNIH3 1 0 2372 645 Aeromonas salmonicida species 1 0 Aeromonas hydrophila species 7753 644 0 1 1 0 2164 948519 Aeromonas rivipollensis species Aeromonas dhakensis species 196024 1844 0 1 Aeromonas veronii species 3352 654 0 1 1 0 1750 651 species Aeromonas media 1 0 648 1336 species Aeromonas caviae 2 0 1 43947 1091 5 genus Tolumonas 1 0 1086 43948 Tolumonas auensis species genus Zobellella 17 347533 2319 0 1 2 Zobellella denitrificans species 2302 347534 0 1 2 1 0 1643 129577 12 genus Oceanimonas 0 1 no rank 1631 2636315 Oceanimonas sp. GK1 species 511062 1631 0 1 3 0 1 225143 1626 1 genus Oceanisphaera 1 0 133 1903694 species Oceanisphaera sp. AMac2203 1 0 1416627 1492 Oceanisphaera profunda species 0 1 4 1 order Cardiobacteriales 135615 407 3 1 0 406 868 2 Cardiobacteriaceae family 1 Dichelobacter genus 869 404 0 1 2 species Dichelobacter nodosus 403 870 0 1 1 0 32 order Thiotrichales 2 11648 72273 476 135617 family Thiotrichaceae 1 4 1 0 Thioploca genus 2 315 40751 1 0 2 313 40754 species Thioploca ingrica 1 0 1021 160 genus 1 0 species Beggiatoa leptomitoformis 160 288004 0 1 7595 34064 family 14 0 1869285 516 1 genus Allofrancisella 2 0 1 1 0 594679 515 Allofrancisella guangzhouensis species 12 0 1 262 7079 Francisella genus 25 28110 1512 Francisella philomiragia species 1 0 0 1 species Francisella hispaniensis 597 622488 954 127 Francisella persica species 1 0 1 0 267 549298 Francisella halioticida species 0 1 Francisella sp. CA97-1460 species 1542390 475 573569 384 species Francisella sp. TX077308 1 0 0 1 species Francisella sp. TX077310 573570 682 0 2 no rank 877 2610885 species Francisella sp. FSC1006 618 1547445 0 1 475375 259 Francisella sp. MA067296 species 1 0 263 1536 Francisella tularensis species 1 0 597 657445 species Francisella noatunensis 1 0 135616 3575 16 family Piscirickettsiaceae 13 0 1 genus 645 933 0 2 1 0 308 92245 species Thiomicrospira aerophila 0 1 Thiomicrospira cyclica species 147268 337 371 1237 genus 1 0 0 1 species Piscirickettsia salmonis 1238 371 47 Cycloclasticus genus 34067 1469 0 1 4 Cycloclasticus zancles species 501 1329899 0 1 no rank 2621467 921 0 2 0 1 Cycloclasticus sp. P1 species 385025 404 517 728003 species Cycloclasticus sp. PY97N 1 0 3 Methylophaga genus 797 40222 1 0 3 0 1 species Methylophaga nitratireducenticrescens 754476 433 754477 361 Methylophaga frappieri species 1 0 genus Hydrogenovibrio 2 28884 277 0 1 2 1 0 275 39765 species Hydrogenovibrio crunogenus 11 0 118884 2940 no rank 0 1 2 Thiolapillus genus 6 1608298 751 1 0 1076588 745 Thiolapillus brandeum species 0 2 genus 329 655184 236 1427364 Candidatus Thioglobus singularis species 1 0 93 1705394 Candidatus Thioglobus autotrophicus species 1 0 0 1 genus 1524249 530 1 0 1249552 530 Pseudohongiella spirulinae species 0 3 clade 316 32036 0 1 species Bathymodiolus septemdierum thioautotrophic gill symbiont 135 113267 122 1541743 genus 1 0 1 0 122 386487 species Candidatus Ruthia magnifica 0 1 species Calyptogena okutanii thioautotrophic gill symbiont 410330 59 1 0 2 9 Sedimenticola genus 717 349742 1543721 708 Sedimenticola thiotaurini species 1 0 0 1 clade 198346 297 297 186490 Candidatus Baumannia cicadellinicola species 1 0 46518 135622 176 Alteromonadales order 100 1 0 3 0 1 267892 1386 13 family Ferrimonadaceae 0 1 2 genus Ferrimonas 92 44011 1373 0 1 Ferrimonas balearica species 44012 1281 233 family Shewanellaceae 267890 12718 0 1 25 24 0 1 22 12485 genus Shewanella 242 0 1 Shewanella bicestrii species 2018305 259 0 1 species Shewanella halifaxensis 271098 697 species Shewanella psychrophila 787 225848 0 1 0 1 species Shewanella woodyi 585 60961 24 311 species Shewanella putrefaciens 1 0 1143 60478 Shewanella amazonensis species 1 0 0 1 Shewanella marisflavi species 307 260364 0 1 Shewanella baltica species 831 62322 359303 1535 Shewanella loihica species 1 0 no rank 2033 196818 0 6 0 1 species Shewanella sp. ANA-3 94122 329 0 1 species Shewanella sp. WE21 2029986 365 species Shewanella sp. W3-18-1 248 351745 0 1 1 0 323 60481 Shewanella sp. MR-7 species 60480 456 Shewanella sp. MR-4 species 1 0 Shewanella sp. Pdp11 species 312 2059264 0 1 Shewanella denitrificans species 192073 482 0 1 0 1 Shewanella violacea species 643 60217 0 1 Shewanella japonica species 341 93973 Shewanella frigidimarina species 319 56812 0 1 species Shewanella oneidensis 70863 514 0 1 535 271097 species Shewanella sediminis 1 0 species Shewanella piezotolerans 560 404011 0 1 70864 361 Shewanella pealeana species 1 0 1 0 3 20 family Moritellaceae 305 267891 58050 285 7 genus Moritella 2 0 1 Moritella viscosa species 278 80854 0 1 1 0 8 12 family Colwelliaceae 2900 267889 0 1 genus 1518149 211 0 1 Thalassotalea crassostreae species 211 1763536 1 0 6 7 genus Colwellia 2677 28228 species Colwellia psychrerythraea 28229 866 0 1 0 3 no rank 196834 1453 Colwellia sp. MT41 species 58049 555 0 1 1 0 405 1816218 species Colwellia sp. PAMC 20917 1 0 1816219 493 Colwellia sp. PAMC 21821 species Colwellia beringensis species 1967665 351 0 1 1 0 6 family Idiomarinaceae 7 1647 267893 0 1 5 13 genus Idiomarina 135575 1640 0 1 species Idiomarina loihiensis 135577 435 2614829 803 no rank 2 0 1 0 368 2100422 Idiomarina sp. OT37-5b species 435 2055892 species Idiomarina sp. X4 1 0 0 1 Idiomarina piscisalsi species 1096243 389 1 0 25 42 family Pseudoalteromonadaceae 9689 267888 0 1 24 genus Pseudoalteromonas 173 53246 9647 28107 154 Pseudoalteromonas espejiana species 1 0 Pseudoalteromonas arctica species 394751 282 0 1 1 0 161398 314 species Pseudoalteromonas phenolica 1 0 404 152297 Pseudoalteromonas issachenkonii species 0 1 Pseudoalteromonas aliena species 242 247523 1 0 176102 241 Pseudoalteromonas agarivorans species 1 0 212 267375 species Pseudoalteromonas marina 474 43658 Pseudoalteromonas rubra species 1 0 0 1 Pseudoalteromonas piscicida species 310 43662 1 0 43657 350 Pseudoalteromonas luteoviolacea species 228 310 Pseudoalteromonas haloplanktis species 1 0 1348114 547 species Pseudoalteromonas piratica 1 0 no rank 194690 2640 0 5 Pseudoalteromonas sp. Bsw20308 species 612 283699 0 1 375 1514074 Pseudoalteromonas sp. NC201 species 1 0 0 1 Pseudoalteromonas sp. 13-15 species 1761891 428 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 1720343 997 0 1 Pseudoalteromonas sp. SM9913 species 234831 228 0 1 1 0 467 43659 species Pseudoalteromonas tetraodonis 1 0 452 314281 Pseudoalteromonas tunicata species species Pseudoalteromonas translucida 166935 321 0 1 species Pseudoalteromonas nigrifaciens 28109 396 0 1 550 298657 Pseudoalteromonas spongiae species 1 0 0 1 Pseudoalteromonas atlantica species 288 808 family 801 267894 0 2 2 0 67572 801 genus 1 0 2614957 468 no rank species Psychromonas sp. CNPT3 314282 468 0 1 333 357794 species Psychromonas ingrahamii 1 0 27 1 0 16896 72275 family Alteromonadaceae 45 0 1 10 36 Marinobacter genus 2742 8620 526 330734 species Marinobacter psychrophilus 1 0 species Marinobacter adhaerens 1153 1033846 0 1 1 0 1076 1420917 Marinobacter salarius species 0 1 species Marinobacter salinus 1874317 696 1 0 1522 2743 species Marinobacter hydrocarbonoclasticus 3 0 83889 2984 no rank species Marinobacter sp. LQ44 940 1749259 0 1 1138 490759 Marinobacter sp. BSs20148 species 1 0 species Marinobacter sp. CP1 906 1671721 0 1 species Marinobacter similis 1420916 627 0 1 2 0 1076 89404 genus no rank 2618684 327 0 1 0 1 Glaciecola sp. 4H-3-7+YE-5 species 983545 327 300231 749 Glaciecola nitratireducens species 1 0 1751872 1013 genus Lacimicrobium 1 2 0 1 0 1 species Lacimicrobium alkaliphilum 1012 1526571 0 1 genus 1621534 367 species Paraglaciecola psychrophila 326544 367 0 1 Alteromonas genus 84 226 5179 0 1 10 2614992 1396 no rank 3 0 Alteromonas sp. MB-3u-76 species 2058133 384 0 1 species Alteromonas sp. Mac1 1777491 313 0 1 1 0 1917158 699 Alteromonas sp. RW2A1 species species Alteromonas macleodii 1350 28108 0 1 1 0 715451 188 species Alteromonas naphthalenivorans 1 0 287094 411 species Alteromonas addita 1 0 233316 595 Alteromonas stellipolaris species 1 0 589873 361 species Alteromonas australica species Alteromonas mediterranea 794 314275 0 1 261825 596 genus 1 0 Agarivorans gilvus species 680279 596 0 1 1 0 28 61 Cellvibrionales order 10884 1706369 0 1 12 family Cellvibrionaceae 116 1706371 4687 genus 411 316625 0 1 1 0 411 86304 species Saccharophagus degradans 0 1 4 55 genus Cellvibrio 10 2380 2 0 1202 2624793 no rank 1945512 800 species Cellvibrio sp. PSBB023 1 0 0 1 Cellvibrio sp. PSBB006 species 402 1987723 Cellvibrio japonicus species 1123 155077 0 1 408 2425 3 Teredinibacter genus 2 1 0 0 1 Teredinibacter turnerae species 2426 405 2 0 1 447467 794 genus Simiduia 10 784 447471 Simiduia agarivorans species 1 0 1 0 2 1 Agarilytica genus 578 2036021 0 1 Agarilytica rhodophyticola species 577 1737490 5 1 0 2055 1706373 family Microbulbiferaceae 7 2048 48073 genus Microbulbifer 20 4 1 0 0 1 Microbulbifer thermotolerans species 781 252514 0 1 Microbulbifer agarilyticus species 260552 656 1769779 591 species Microbulbifer aggregans 1 0 1706372 2447 27 family Halieaceae 4 0 1 1217416 2420 genus Halioglobus 9 3 0 1 930806 1175 Halioglobus pacificus species 1 0 1 0 1236 930805 species Halioglobus japonicus 1 0 6 16 family Spongiibacteraceae 1634 1706375 2 1 0 601 1434050 6 genus Zhongshania 0 1 Zhongshania aliphaticivorans species 1470434 595 2 0 1 1084558 623 1 genus Oceanicoccus 1 0 716816 622 Oceanicoccus sagamiensis species genus 394 630749 0 1 0 1 no rank 394 2631504 0 1 species Spongiibacter sp. IMCC21906 394 1620392 0 1 32 Pasteurellales order 2 135625 18748 31 0 1 712 18746 2229 family Pasteurellaceae 697331 441 Basfia genus 1 2 0 1 species [Mannheimia] succiniciproducens 157673 440 0 1 0 1 genus 2764 476528 1 0 47735 2764 species Bibersteinia trehalosi 745 1192 Pasteurella genus 9 3 0 1 1 0 833 747 species Pasteurella multocida species Pasteurella dagmatis 754 350 0 1 1 0 3 6 genus Aggregatibacter 1130 416916 Aggregatibacter aphrophilus species 555 732 0 1 569 714 Aggregatibacter actinomycetemcomitans species 1 0 0 1 2 genus Glaesserella 2 2094023 688 738 686 species Glaesserella parasuis 1 0 1 0 6 1 genus Haemophilus 3948 724 268 249188 Haemophilus pittmaniae species 1 0 species Haemophilus parainfluenzae 729 1120 0 1 1 0 1347 727 species Haemophilus influenzae 0 1 no rank 2609962 510 1 0 712310 510 Haemophilus sp. oral taxon 036 species 0 1 species [Haemophilus] ducreyi 730 702 genus Gallibacterium 1 993 155493 1 0 2 0 1 species Gallibacterium anatis 750 992 75984 1917 genus Mannheimia 4 4 0 1 0 1 no rank 246 2645054 1 0 246 1432056 Mannheimia sp. USDA-ARS-USMARC-1261 species 849 75985 species Mannheimia haemolytica 1 0 1 0 85404 818 species Mannheimia varigena 1 0 5 16 Actinobacillus genus 2631 713 Actinobacillus pleuropneumoniae species 715 1069 0 1 0 1 Actinobacillus succinogenes species 67854 445 675 718 species Actinobacillus equuli 1 0 species Actinobacillus suis 426 716 0 1 0 1 2 genus Histophilus 3 214906 813 0 1 Histophilus somni species 731 810 869 1240482 order 4 0 4 family Orbaceae 1240483 869 0 1 4 1 0 1335631 394 genus 0 1 Frischella perrara species 394 1267021 1193503 471 5 Gilliamella genus 2 0 1 1 0 466 1196095 species Gilliamella apicola 1 0 43 11 order Vibrionales 32013 135623 32002 641 Vibrionaceae family 326 42 1 0 1 0 2042066 365 genus species Paraphotobacterium marinum 1755811 365 0 1 511678 1585 2 Aliivibrio genus 4 0 1 Aliivibrio fischeri species 668 832 0 1 1 0 536 40269 Aliivibrio salmonicida species 1 0 215 80852 species Aliivibrio wodanis 2 0 1 246861 506 9 Grimontia genus 1 0 673 497 Grimontia hollisae species 3357 657 Photobacterium genus 5 4 1 0 Photobacterium gaetbulicola species 1075 1295392 0 1 38293 1424 Photobacterium damselae species 1 0 0 1 species Photobacterium profundum 853 74109 30 0 1 662 25863 Vibrio genus 387 340 1534743 species Vibrio hyugaensis 1 0 1 0 333 45658 Vibrio scophthalmi species species Vibrio anguillarum 799 55601 0 1 0 1 species Vibrio vulnificus 672 2405 1 0 867 674 Vibrio mimicus species 0 1 Vibrio tapetis species 574 52443 1 0 28173 562 Vibrio nigripulchritudo species species Vibrio cholerae 666 1504 0 1 1 0 1435069 573 species Vibrio tritonius 1 0 882 676 Vibrio fluvialis species 0 10 species group 717610 10384 1 0 696485 1050 species Vibrio owensii species Vibrio natriegens 1325 691 0 1 0 1 species Vibrio harveyi 1212 669 0 1 species Vibrio parahaemolyticus 1280 670 species subgroup 2315253 1281 0 2 0 1 Vibrio antiquarius species 150340 422 Vibrio diabolicus species 50719 859 0 1 1 0 624 190895 Vibrio rotiferianus species 1 0 1734 680 Vibrio campbellii species Vibrio jasicida species 541 766224 0 1 1 0 1337 663 species Vibrio alginolyticus 321 1891919 species group 1 0 1 0 321 29498 Vibrio tubiashii species 0 1 Vibrio qinghaiensis species 252 2025808 1 0 29494 835 species Vibrio furnissii 2614977 1004 no rank 2 0 species Vibrio sp. 2521-89 2014742 568 0 1 Vibrio sp. EJY3 species 436 1116375 0 1 Vibrio coralliilyticus species 1802 190893 0 1 1 0 701 553239 species Vibrio breoganii 1 0 687 1154 Vibrio gazogenes species species Vibrio tasmaniensis 212663 184 0 1 0 1 129 order Pseudomonadales 939 72274 172262 0 1 86 1041 family Pseudomonadaceae 135621 152811 Oblitimonas genus 1 660 1849530 1 0 2 0 1 species Oblitimonas alkaliphila 1697053 659 genus Pseudomonas 5390 146187 286 1 0 80 species group 19766 136843 0 9 0 1 Pseudomonas orientalis species 1017 76758 Pseudomonas fluorescens species 294 11149 0 1 380021 1782 species Pseudomonas protegens 1 0 species Pseudomonas mandelii 858 75612 0 1 1 0 836 200451 Pseudomonas poae species 1 0 1459 47878 species Pseudomonas azotoformans 0 1 species Pseudomonas trivialis 852 200450 76761 883 species Pseudomonas veronii 1 0 0 1 Pseudomonas corrugata species 930 47879 219572 813 Pseudomonas antarctica species 1 0 1 0 2241 104087 Pseudomonas frederiksbergensis species species group 12773 136849 0 8 1 0 251695 6223 species subgroup 1 0 317 6223 species Pseudomonas syringae 1 0 386 2775504 no rank 0 1 Pseudomonas sp. Lz4W species 386 1206777 782 36746 species Pseudomonas cichorii 1 0 2 0 2022 251698 species subgroup Pseudomonas amygdali species 1197 47877 0 1 1 0 29438 825 species Pseudomonas savastanoi 1 0 251701 1614 Pseudomonas syringae group genomosp. 3 species 920 46257 species Pseudomonas avellanae 1 0 1 0 33069 826 Pseudomonas viridiflava species Pseudomonas brassicacearum species 930166 1898 0 1 6 0 136845 23836 species group species Pseudomonas putida 303 14138 0 1 0 1 Pseudomonas monteilii species 76759 3634 1 0 47880 1891 Pseudomonas fulva species 1536 47885 Pseudomonas oryzihabitans species 1 0 1658 78327 Pseudomonas mosselii species 1 0 Pseudomonas plecoglossicida species 70775 979 0 1 0 1 Pseudomonas cerasi species 1222 1583341 6 0 136841 19655 species group 1 0 1404 43263 species Pseudomonas alcaligenes 0 1 Pseudomonas mendocina species 5211 300 53408 2158 Pseudomonas citronellolis species 1 0 Pseudomonas resinovorans species 53412 1500 0 1 287 7482 Pseudomonas aeruginosa species 1 0 species subgroup 1232139 1900 0 1 0 1 species Pseudomonas furukawaii 1900 1149133 Pseudomonas parafulva species 157782 1890 0 1 1 0 198620 1885 Pseudomonas koreensis species Pseudomonas silesiensis species 1853130 910 0 1 0 1 species Pseudomonas psychrotolerans 1364 237610 0 1 species Pseudomonas knackmussii 65741 912 136842 6977 species group 2 0 296 1174 Pseudomonas fragi species 1 0 0 1 Pseudomonas chlororaphis species 587753 5803 216142 1180 Pseudomonas rhizosphaerae species 1 0 2 0 8035 136846 species group Pseudomonas balearica species 74829 1354 0 1 578833 6681 species subgroup 1 0 Pseudomonas stutzeri species 316 6681 0 1 312306 741 species Pseudomonas entomophila 1 0 species Pseudomonas alcaliphila 101564 1156 0 1 0 30 no rank 30028 196821 1 0 647 2067572 species Pseudomonas sp. NC02 Pseudomonas sp. MRSN12121 species 1107 1611770 0 1 956 1898684 Pseudomonas sp. LPH1 species 1 0 1931241 1215 species Pseudomonas sp. S-6-2 1 0 0 1 species Pseudomonas sp. FDAARGOS_380 794 2018067 1930532 1399 Pseudomonas sp. CC6-YY-74 species 1 0 0 1 species Pseudomonas sp. LG1D9 2083054 983 1294143 1622 species Pseudomonas sp. ATCC 13867 1 0 0 1 Pseudomonas sp. DR 5-09 species 1534110 448 0 1 Pseudomonas sp. StFLB209 species 1028989 1354 species Pseudomonas sp. TKP 1415630 658 0 1 1234 1259844 Pseudomonas sp. FGI182 species 1 0 1207075 762 species Pseudomonas sp. UW4 1 0 1019 2069256 Pseudomonas sp. XWY-1 species 1 0 1 0 720 1649877 Pseudomonas sp. CCOS 191 species species Pseudomonas sp. SWI6 778 2083051 0 1 0 1 species Pseudomonas sp. TCU-HL1 1080 1856685 species Pseudomonas sp. JY-Q 1338689 1021 0 1 1 0 711 1636610 Pseudomonas sp. PONIH3 species 0 1 Pseudomonas sp. URMO17WK12:I11 species 1283291 1859 1186 2083052 Pseudomonas sp. SWI36 species 1 0 1 0 960 69328 Pseudomonas sp. VLB120 species 1 0 1186 1500686 species Pseudomonas sp. Os17 0 1 Pseudomonas sp. M30-35 species 538 1981174 2049589 960 species Pseudomonas sp. HLS-6 1 0 1500687 1370 species Pseudomonas sp. St29 1 0 1 0 777 1659194 species Pseudomonas sp. GR 6-02 767 1827300 Pseudomonas sp. MYb193 species 1 0 1 0 2083055 1083 species Pseudomonas sp. LH1G9 2083053 834 species Pseudomonas sp. SWI44 1 0 1 0 604 1788301 species Pseudomonas versuta 0 1 species Pseudomonas lurida 244566 1274 157783 625 Pseudomonas cremoricolorata species 1 0 1 0 237609 1012 species Pseudomonas alkylphenolica subfamily 4923 351 0 3 352 4923 42 Azotobacter genus 3 0 1 0 1 Azotobacter vinelandii species 354 1967 2914 353 Azotobacter chroococcum species 1 0 18512 468 Moraxellaceae family 47 42 1 0 11 0 1 497 3199 22 Psychrobacter genus 245 45610 Psychrobacter urativorans species 1 0 Psychrobacter alimentarius species 602 261164 0 1 0 1 Psychrobacter cryohalolentis species 330922 199 196806 1661 no rank 6 0 178 571800 Psychrobacter sp. G species 1 0 1 0 163 1699624 Psychrobacter sp. P11G5 species 1 0 1699622 179 species Psychrobacter sp. P2G3 0 1 species Psychrobacter sp. PRwf-1 349106 158 1028416 344 Psychrobacter sp. DAB_AL43B species 1 0 1720344 639 Psychrobacter sp. AntiMn-1 species 1 0 0 1 species Psychrobacter arcticus 334543 470 Moraxella genus 31 1896 475 1 0 5 0 1 Moraxella bovoculi species 386891 591 0 1 Moraxella catarrhalis species 293 480 34062 799 species Moraxella osloensis 1 0 0 1 species Moraxella ovis 29433 182 Acinetobacter genus 78 469 13370 0 1 25 1789224 590 Acinetobacter larvae species 1 0 591 756892 Acinetobacter indicus species 1 0 0 1 Acinetobacter johnsonii species 40214 316 species group 3945 909768 0 5 470 1651 species Acinetobacter baumannii 1 0 1 0 163 1785128 species Acinetobacter lactucae 0 1 species Acinetobacter pittii 1240 48296 471 600 species Acinetobacter calcoaceticus 1 0 106654 291 species Acinetobacter nosocomialis 1 0 Acinetobacter haemolyticus species 29430 610 0 1 0 1 species Acinetobacter bereziniae 501 106648 0 1 Acinetobacter schindleri species 108981 828 0 1 Acinetobacter radioresistens species 40216 533 species Acinetobacter soli 344 487316 0 1 0 1 species 365 202950 62977 365 Acinetobacter sp. ADP1 strain 1 0 0 1 species Acinetobacter equi 412 1324350 0 7 no rank 3042 196816 596 1407071 Acinetobacter sp. TGL-Y2 species 1 0 Acinetobacter sp. ACNIH1 species 709 1636603 0 1 Acinetobacter sp. TTH0-4 species 321 1646498 0 1 1 0 246 1608473 species Acinetobacter sp. NCu2D-2 1 0 554 1808001 species Acinetobacter sp. LoGeW2-3 species Acinetobacter sp. ACNIH2 347 1758189 0 1 0 1 Acinetobacter sp. SWBY1 species 269 2079596 379 1148157 species Acinetobacter oleivorans 1 0 species Acinetobacter junii 836 40215 0 1 order Legionellales 8 6154 118969 1 0 19 14 0 1 444 5339 12 family Legionellaceae 31 Legionella genus 445 5092 0 1 12 0 1 species Legionella pneumophila 2283 446 0 1 species Legionella longbeachae 450 273 Legionella lansingensis species 186 45067 0 1 0 1 Legionella endosymbiont of Polyplax serrata species 151 2005262 452 353 species Legionella spiritensis 1 0 species Legionella clemsonensis 239 1867846 0 1 1 0 96230 126 species Legionella fallonii 262 66969 species Legionella waltersii 1 0 352 29423 Legionella oakridgensis species 1 0 0 1 species Legionella hackeliae 449 460 376 28087 species Legionella sainthelensi 1 0 genus 465 235 0 1 0 1 Tatlockia micdadei species 451 235 13 Coxiellaceae family 118968 807 0 1 4 0 2 genus 651 776 1 0 40 2676648 no rank Coxiella endosymbiont of Amblyomma americanum species 325775 40 0 1 611 777 species Coxiella burnetii 1 0 0 1 no rank 143 134284 143 1592897 Coxiella-like endosymbiont species 1 0 1 0 244 Enterobacterales order 1441 310251 91347 1 0 14 Hafniaceae family 20 12158 1903412 3 0 1 568 2082 Hafnia genus 56 569 1414 Hafnia alvei species 1 0 1 0 2621980 612 no rank species Hafnia sp. CBA7124 612 1848580 0 1 2 0 1 82982 541 Obesumbacterium genus 8 species Obesumbacterium proteus 533 82983 0 1 8 0 1 635 9515 508 Edwardsiella genus no rank 2571 2676541 0 2 1650654 1260 Edwardsiella sp. LADL05-105 species 1 0 1311 1578828 Edwardsiella sp. EA181011 species 1 0 842 67780 species Edwardsiella ictaluri 1 0 1263550 1076 species Edwardsiella piscicida 1 0 species Edwardsiella hoshinae 93378 874 0 1 species Edwardsiella tarda 636 2377 0 1 0 1 Edwardsiella anguillarum species 1267 1821960 544 1903416 family 2 0 2 0 1 82984 544 5 Pragia genus 0 1 Pragia fontium species 82985 539 0 2 no rank 451511 1214 1214 702 100 genus Plesiomonas 2 1 0 1114 703 Plesiomonas shigelloides species 1 0 59 family Morganellaceae 1903414 10966 0 1 21 3 0 1 583 1722 8 Proteus genus 1 0 1397 584 species Proteus mirabilis species Proteus vulgaris 317 585 0 1 1 0 2 Morganella genus 12 1797 581 1785 582 Morganella morganii species 1 0 genus Xenorhabdus 30 626 2775 0 1 6 1 0 628 375 Xenorhabdus nematophila species 1 0 40577 669 Xenorhabdus poinarii species 0 1 species Xenorhabdus doucetiae 373 351671 1 0 477 40576 Xenorhabdus bovienii species 851 351679 species Xenorhabdus hominickii 1 0 637 48 genus 1 0 species Arsenophonus symbiont of Lipoptena fortisetosa 634113 48 0 1 4 1 0 2365 586 14 genus Providencia 0 1 species Providencia stuartii 984 588 1 0 706 126385 species Providencia alcalifaciens 0 1 species Providencia rettgeri 661 587 1 0 4 4 genus Photorhabdus 2200 29487 Photorhabdus temperata species 574560 734 0 1 1 0 29488 630 Photorhabdus luminescens species 1 0 291112 832 species Photorhabdus asymbiotica 39 1 0 47211 1903411 Yersiniaceae family 172 4 0 1 34037 2627 genus Rahnella 71 0 2 no rank 2635087 1700 species Rouxiella sp. ERMR1:05 850 1805933 0 1 850 741091 Rahnella sp. Y9602 species 1 0 0 1 species Rahnella aquatilis 34038 856 Yersinia genus 351 11401 629 1 0 13 species Yersinia ruckeri 692 29486 0 1 694 2653513 no rank 1 0 species Yersinia sp. FDAARGOS_228 1839800 694 0 1 389 28152 species Yersinia kristensenii 1 0 species group 1649845 1908 0 3 0 1 Yersinia pseudotuberculosis species 633 701 632 618 species Yersinia pestis 1 0 Yersinia similis species 367190 589 0 1 species Yersinia rohdei 29485 995 0 1 1 0 2189 29484 species Yersinia frederiksenii Yersinia intermedia species 631 697 0 1 0 1 species Yersinia enterocolitica 2785 630 0 1 Yersinia aldovae species 29483 274 263819 427 Yersinia aleksiciae species 1 0 2 1 0 1602 929812 6 Gibbsiella genus 0 1 Gibbsiella quercinecans species 929813 1596 19 Chania genus 833 1745211 1 0 2 Chania multitudinisentens species 1639108 814 0 1 1 0 19 1565532 genus Rouxiella 1449 genus Serratia 30557 613 1 0 16 1 0 47917 2338 Serratia fonticola species species Serratia ficaria 1759 61651 0 1 Serratia plymuthica species 82996 1911 0 1 species Serratia proteamaculans 1448 28151 0 1 0 1 species Serratia rubidaea 1559 61652 8770 615 species Serratia marcescens 1 0 0 1 species Serratia liquefaciens 1521 614 2647522 9802 no rank 8 0 Serratia sp. SCBI species 1725 488142 0 1 Serratia sp. SSNIH1 species 1758196 1761 0 1 1 0 768490 636 species Serratia sp. AS12 768493 635 species Serratia sp. AS13 1 0 1 0 2033438 1419 species Serratia sp. MYb239 628 104623 Serratia sp. ATCC 39006 species 1 0 1936 1327989 Serratia sp. FS14 species 1 0 0 1 Serratia sp. FGI94 species 671990 1062 22469 1903410 57 family Pectobacteriaceae 20 1 0 6 1 0 9387 204037 306 Dickeya genus species Dickeya zeae 2550 204042 0 1 0 1 Dickeya solani species 1089444 2288 0 1 species Dickeya dianthicola 1128 204039 1 0 1596 204038 Dickeya dadantii species 0 1 species Dickeya fangzhongdai 1778540 1519 2244 84565 90 genus Sodalis 5 1 0 0 1 Candidatus Sodalis pierantonius species 545 1486991 1 0 63612 703 species Sodalis glossinidius 1 0 70 1929246 Sodalis endosymbiont of Henestaris halophilus species 1 0 836 1239307 species Sodalis praecaptivus 14 Brenneria genus 1559 71655 1 0 2 Brenneria goodwinii species 1109412 1545 0 1 0 1 6 200 Pectobacterium genus 122277 9222 Pectobacterium polaris species 2216 2042057 0 1 1 0 775 1905730 species Pectobacterium parmentieri 1075 29471 Pectobacterium atrosepticum species 1 0 3908 554 Pectobacterium carotovorum species 1 0 0 1 Pectobacterium wasabiae species 55208 1048 118 1 0 192095 543 Enterobacteriaceae family 1716 561 16730 genus Escherichia 270 5 0 1 564 929 Escherichia fergusonii species 1 0 0 1 species Escherichia albertii 1402 208962 1499973 656 species Escherichia marmotae 1 0 13473 562 Escherichia coli species 1 0 0 1 14 599 Citrobacter genus 544 19144 2644389 1576 no rank 2 0 794 1702170 Citrobacter sp. FDAARGOS_156 species 1 0 0 1 Citrobacter sp. CFNIH10 species 1920110 782 1 0 1266 67825 Citrobacter rodentium species 0 1 species Citrobacter koseri 545 1260 Citrobacter farmeri species 797 67824 0 1 species group 1344959 10934 0 7 548 2077147 Citrobacter freundii complex sp. CFNIH3 species 1 0 Citrobacter freundii complex sp. CFNIH4 species 2077148 782 0 1 0 1 species Citrobacter freundii complex sp. CFNIH9 2077149 840 1072 57706 species Citrobacter braakii 1 0 species Citrobacter freundii 546 4896 0 1 1 0 67827 1690 species Citrobacter werkmanii Citrobacter freundii complex sp. CFNIH2 species 2066049 1106 0 1 Citrobacter amalonaticus species 35703 2712 0 1 2354 genus Enterobacter 37874 547 1 0 22 no rank 8200 2608935 0 9 1416 2051905 species Enterobacter sp. CRENT-193 1 0 0 1 Enterobacter sp. 638 species 989 399742 Enterobacter sp. HK169 species 610 1868135 0 1 0 1 Enterobacter sp. R4-368 species 1170 1166130 493 1560339 Enterobacter sp. E20 species 1 0 species Enterobacter sp. Crenshaw 1977566 379 0 1 0 1 species Enterobacter sp. SA187 1914861 1415 0 1 species Enterobacter sp. ODB01 1827481 866 1 0 1692238 862 species Enterobacter sp. FY-07 species group 354276 27320 0 12 species Enterobacter hormaechei 4228 6534 158836 1 0 3 1812934 1219 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 1 0 1087 1296536 subspecies Enterobacter xiangfangensis 1 0 1812935 1309 Enterobacter cloacae complex 'Hoffmann cluster IV' species 1 0 1 0 61645 3341 species Enterobacter asburiae species Enterobacter kobei 1065 208224 0 1 1 0 700 69218 species Enterobacter cancerogenus 0 1 species Enterobacter cloacae 550 11417 no rank 2249 2757714 0 3 Enterobacter cloacae complex bacterium species 896 2027919 0 1 692 1915310 Enterobacter cloacae complex sp. ECNIH7 species 1 0 2077137 661 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 species 1 0 Enterobacter ludwigii species 299767 705 0 1 579 1194 genus 1 0 1194 61648 species Kluyvera intermedia 1 0 5 1 0 4298 1330547 33 genus Kosakonia 0 1 Kosakonia oryzae species 841 497725 1 0 283686 993 Kosakonia radicincitans species 0 1 Kosakonia sacchari species 1158459 1071 Kosakonia cowanii species 1360 208223 0 1 1 0 409304 98 genus 1 0 168169 98 Candidatus Ishikawaella capsulata species 1 0 3 genus Salmonella 18 7543 590 1 0 28901 6395 Salmonella enterica species 0 1 Salmonella bongori species 54736 1130 78 401618 genus 1 0 species Candidatus Riesia pediculicola 78 401619 0 1 0 1 4 genus Lelliottia 63 1330545 3945 species Lelliottia nimipressuralis 1166 69220 0 1 1 0 61646 1846 species Lelliottia amnigena 1 0 1907578 870 species Lelliottia jeotgali 2384 191675 no rank 19 0 0 19 clade 2384 84563 clade 464 146507 0 4 0 1 species secondary endosymbiont of Ctenarytaina eucalypti 1199245 89 0 1 2 genus Candidatus Hamiltonella 8 568987 165 0 1 species Candidatus Hamiltonella defensa 138072 157 0 1 secondary endosymbiont of Heteropsylla cubana species 134287 210 7 0 744 84564 clade 7 0 1 203804 744 genus Candidatus Blochmannia 6 Candidatus Blochmannia chromaiodes species 251542 141 0 1 Candidatus Blochmannia pennsylvanicus species 101534 149 0 1 86 203907 species Candidatus Blochmannia floridanus 1 0 no rank 323 711328 0 2 0 1 species Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505596 32 1 0 1505597 291 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 39 251535 species Candidatus Blochmannia vafer 1 0 clade 199891 327 0 1 secondary endosymbiont of Trabutina mannipara species 1835721 327 0 1 1906657 223 genus Candidatus Doolittlea 5 2 0 1 Candidatus Doolittlea endobia species 218 1778262 0 1 0 1 genus 150 1906661 1 0 150 1070130 species Candidatus Gullanella endobia Candidatus Hoaglandella genus 5 157 1906659 1 0 2 Candidatus Hoaglandella endobia species 152 1778263 0 1 0 1 genus 64 1906660 1 0 1778264 64 species Candidatus Mikella endobia 1 0 1682492 255 genus Candidatus Tachikawaea gelatinosa species 1410383 255 0 1 6349 36866 no rank 5 0 693444 1427 Enterobacteriaceae bacterium strain FGI 57 species 1 0 1091 891974 Plautia stali symbiont species 1 0 1 0 1217 1920128 species Enterobacteriaceae bacterium ENNIH3 1 0 1920109 1174 Enterobacteriaceae bacterium ENNIH2 species 1440 2066051 Enterobacteriaceae bacterium ENNIH1 species 1 0 0 1 2 Cedecea genus 6 158483 3855 0 1 species Cedecea neteri 3849 158822 1482 genus Klebsiella 570 45970 0 1 10 1 0 1134687 3541 Klebsiella michiganensis species no rank 2608929 2967 0 2 1905288 1241 species Klebsiella sp. LTGPAF-6F 1 0 Klebsiella sp. M5al species 1934254 1726 0 1 0 1 Klebsiella aerogenes species 1910 548 1 0 244366 4513 species Klebsiella variicola 0 1 species Klebsiella oxytoca 571 6957 0 1 Klebsiella quasipneumoniae species 1463165 2679 19465 573 species Klebsiella pneumoniae 1 0 0 1 Klebsiella quasivariicola species 2456 2026240 genus Candidatus Moranella 1 114 1048757 1 0 2 1048758 113 species Candidatus Moranella endobia 1 0 18635 160674 163 genus Raoultella 3 1 0 1 0 2442 575 species Raoultella planticola 1 0 16030 54291 species Raoultella ornithinolytica 0 1 4 253 genus Leclercia 83654 4310 0 1 Leclercia adecarboxylata species 1233 83655 0 2 no rank 2824 2627398 species Leclercia sp. LSNIH3 1101 1920116 0 1 1723 1920114 species Leclercia sp. LSNIH1 1 0 4 1 0 3066 620 Shigella genus 647 608 623 Shigella flexneri species 1 0 0 1 no rank 2629414 803 Shigella sp. PAMC 28760 species 803 1813821 0 1 1 0 1008 622 Shigella dysenteriae species 3 1 0 4166 1330546 43 Pluralibacter genus [Enterobacter] lignolyticus species 1334193 1627 0 1 2496 61647 Pluralibacter gergoviae species 1 0 413496 8760 209 genus Cronobacter 8 0 1 0 1 Cronobacter condimenti species 892 1163710 species Cronobacter muytjensii 1558 413501 0 1 1 0 1031 535744 species Cronobacter universalis species Cronobacter dublinensis 413497 1283 0 1 28141 1734 Cronobacter sakazakii species 1 0 0 1 species Cronobacter malonaticus 1099 413503 1 0 954 413502 Cronobacter turicensis species genus 1866 1335483 0 1 0 1 Shimwellia blattae species 1866 563 86 family Erwiniaceae 22153 1903409 1 0 27 3 Buchnera genus 32199 1190 0 1 2 species Buchnera aphidicola 1187 9 0 1 6283 551 165 genus Erwinia 8 1 0 0 1 Erwinia pyrifoliae species 79967 602 no rank 2622719 727 0 1 0 1 species Erwinia sp. Ejp617 215689 727 552 854 Erwinia amylovora species 1 0 1 0 338565 915 Erwinia tasmaniensis species 1 0 1619313 1254 species Erwinia gerundensis 0 1 Erwinia billingiae species 1517 182337 1922217 249 Candidatus Erwinia sp. ErCipseudotaxifoliae species 1 0 genus Tatumella 14 82986 830 0 1 2 0 1 species Tatumella citrea 816 53336 genus 51228 202 0 1 Wigglesworthia glossinidia species 51229 202 0 1 genus 2504 2100764 0 2 0 1 Pantoea gaviniae species 1237 665914 1 0 1267 665913 species Pantoea calida 53335 11058 503 genus Pantoea 11 0 1 66269 799 species Pantoea stewartii 1 0 1 0 956 1891675 species Pantoea alhagi species group 1646 1654067 0 1 549 1646 species Pantoea agglomerans 1 0 0 1 Pantoea vagans species 2074 470934 3 0 2630326 3259 no rank 0 1 Pantoea sp. PSNIH2 species 1418 1484157 1 0 592316 962 species Pantoea sp. At-9b Pantoea sp. PSNIH1 species 1484158 879 0 1 0 1 species Candidatus Pantoea carbekii 105 1235990 504 1076550 Pantoea rwandensis species 1 0 1212 553 Pantoea ananatis species 1 0 6 1 0 2603 1692040 order Acidiferrobacterales 26 5 1 0 2577 1692041 37 Acidiferrobacteraceae family 1744881 1322 21 genus Sulfuricaulis 2 0 1 Sulfuricaulis limicola species 1301 1620215 0 1 19 genus Sulfurifustis 1692042 1218 0 1 2 species Sulfurifustis variabilis 1675686 1199 0 1 49 0 1 135613 28464 426 order Chromatiales 2 0 451214 1609 no rank 1 0 2 Thiohalobacter genus 50 1609 1273155 0 1 species Thiohalobacter thiocyanaticus 585455 1559 291 family Ectothiorhodospiraceae 11063 72276 1 0 18 14 genus Alkalilimnicola 133193 1851 0 1 2 0 1 species Alkalilimnicola ehrlichii 351052 1837 1051 1023 10 genus Ectothiorhodospira 2 0 1 no rank 1013 2684909 0 1 0 1 Ectothiorhodospira sp. BSL-9 species 1013 1442136 7 genus Acidihalobacter 994 1765964 1 0 2 160660 987 species Acidihalobacter prosperus 1 0 106633 4660 90 genus Thioalkalivibrio 6 0 1 1 0 2621013 551 no rank 0 1 Thioalkalivibrio sp. K90mix species 396595 551 640 108010 species Thioalkalivibrio paradoxus 1 0 1033854 1389 species Thioalkalivibrio sulfidiphilus 1 0 106634 1326 Thioalkalivibrio versutus species 1 0 664 186931 Thioalkalivibrio nitratireducens species 1 0 85108 1039 10 Halorhodospira genus 2 0 1 1053 1029 Halorhodospira halophila species 1 0 1 0 3 Spiribacter genus 66 1205 1335745 742 1335757 species Spiribacter curvatus 1 0 Spiribacter salinus species 397 1335746 0 1 18 1 0 11388 1046 Chromatiaceae family 157 85072 1653 13 Allochromatium genus 2 0 1 Allochromatium vinosum species 1049 1640 0 1 2 0 1 13724 1799 17 genus Thiocystis 1 0 73141 1782 Thiocystis violascens species 2 0 1 156885 1534 genus Thioflavicoccus 12 80679 1522 species Thioflavicoccus mobilis 1 0 1 0 4 genus Nitrosococcus 9 1501 1227 0 1 species Nitrosococcus oceani 1229 305 1 0 473531 423 Nitrosococcus watsonii species 0 1 species Nitrosococcus halophilus 133539 764 2 1 0 1881 53392 Thiodictyon genus 13 0 1 species Candidatus Thiodictyon syntrophicum 1166950 1868 2 1 0 102 1980513 genus Candidatus Nitrosoglobus 1 Candidatus Nitrosoglobus terrae species 1630141 101 0 1 1165 82569 no rank 1 0 species Chromatiaceae bacterium 2141T.STBD.0c.01a 1978339 1165 0 1 1 0 2 genus Marichromatium 8 1596 85076 species Marichromatium purpuratum 37487 1588 0 1 0 1 family 449719 832 0 1 genus 437504 832 1 0 832 437505 Granulosicoccus antarcticus species 4 0 1 255526 1606 14 Halothiobacillaceae family genus Halothiobacillus 8 109262 1592 0 1 3 0 1 no rank 2636392 926 1 0 1860122 926 Halothiobacillus sp. LS2 species species Halothiobacillus neapolitanus 927 658 0 1 family 457 1738654 0 2 2 0 1 1738655 457 3 Woeseia genus 0 1 Woeseia oceani species 454 1548547 1 0 3 family Wenzhouxiangellaceae 16 1083 1676141 2 1 0 1067 1676142 genus Wenzhouxiangella 34 species Wenzhouxiangella marina 1579979 1033 0 1 7 Nevskiales order 1775403 1308 0 1 4 Sinobacteraceae family 18 568386 0 1 0 2 family 2689614 1283 2 1 0 1283 469322 genus Steroidobacter 13 465721 1270 Steroidobacter denitrificans species 1 0 135618 6118 Methylococcales order 40 13 0 1 Methylococcaceae family 47 403 6078 0 1 12 0 1 2 1 Methylovulum genus 762296 747 746 1704499 species Methylovulum psychrotolerans 1 0 2 0 1 413 879 11 Methylococcus genus Methylococcus capsulatus species 414 868 0 1 3607 416 Methylomonas genus 77 5 1 0 1 0 702114 1201 species Methylomonas koyamae 1 0 1036 2608980 no rank Methylomonas sp. DH-1 species 1036 1727196 0 1 0 1 Methylomonas denitrificans species 1538553 742 551 421 Methylomonas methanica species 1 0 39773 798 genus Methylomicrobium 2 2 0 1 1 0 271065 796 species Methylomicrobium alcaliphilum 401824 28211 class Alphaproteobacteria 1792 553 1 0 0 1 4 2 order Magnetococcales 1191478 919 Magnetococcaceae family 3 1191479 917 0 1 3 1 Magnetococcus genus 162171 914 0 1 2 0 1 Magnetococcus marinus species 913 1124597 order 2800060 2238 0 5 42 family Hyphomonadaceae 2238 69657 1 0 5 1743 85 Hyphomonas genus 19 3 1 0 2630699 817 no rank 1 0 817 1906738 Hyphomonas sp. Mor2 species 1 0 0 1 species Hyphomonas neptunium 81032 907 1 0 2723 453 genus 1 0 2724 453 Hirschia baltica species 0 1 51 Rickettsiales order 32 766 5652 0 1 family 60 1328881 411566 60 genus 1 0 0 1 species Candidatus Midichloria mitochondrii 234827 60 0 1 26 2 Rickettsiaceae family 775 3531 0 1 genus 2115980 110 0 1 species Candidatus Phycorickettsia trachydisci 110 2115978 3419 33988 tribe 24 0 genus 69474 386 0 1 0 1 Orientia tsutsugamushi species 386 784 475 genus Rickettsia 3033 780 1 0 23 0 1 no rank 114295 142 0 1 Rickettsia endosymbiont of Bemisia tabaci species 337479 142 species group 128 114292 0 2 1 0 785 75 Rickettsia typhi species 0 1 Rickettsia prowazekii species 53 782 2060 114277 species group 17 0 35790 22 Rickettsia japonica species 1 0 Rickettsia amblyommatis species 33989 25 0 1 1 0 94 47589 species Rickettsia peacockii species Rickettsia slovaca 35794 28 0 1 1 0 12 226665 species Rickettsia heilongjiangensis Rickettsia akari species 786 345 0 1 1 0 37 783 Rickettsia rickettsii species species Rickettsia monacensis 155 109232 0 1 1 0 42 1105106 Rickettsia philipii species Rickettsia montanensis species 33991 24 0 1 Rickettsia australis species 787 427 0 1 1 0 436 42862 species Rickettsia felis 157 33992 species Rickettsia rhipicephali 1 0 0 1 Rickettsia parkeri species 35792 7 Rickettsia conorii species 51 781 0 1 0 1 Rickettsia africae species 35788 30 0 1 Rickettsia massiliae species 35791 168 2 0 1129742 228 species group Rickettsia canadensis species 63 788 0 1 Rickettsia bellii species 33990 165 0 1 Anaplasmataceae family 1 1750 942 1 0 22 0 3 genus 768 440 106179 110 species group 1 0 110 948 species Anaplasma phagocytophilum 1 0 0 1 Anaplasma centrale species 769 150 species Anaplasma marginale 180 770 0 1 0 1 6 Ehrlichia genus 1 943 506 106178 403 species group 4 0 1 0 109 35795 species Ehrlichia muris 69 945 species Ehrlichia chaffeensis 1 0 779 147 Ehrlichia ruminantium species 1 0 species Ehrlichia canis 78 944 0 1 0 1 no rank 102 106181 0 1 Ehrlichia sp. HF species 391036 102 0 1 4 Neorickettsia genus 9 33993 315 species Neorickettsia risticii 950 124 0 1 species Neorickettsia helminthoeca 44 33994 0 1 species Neorickettsia sennetsu 951 138 0 1 952 488 tribe 8 0 12 Wolbachia genus 488 953 1 0 8 0 7 no rank 476 2640676 67 80849 species Wolbachia endosymbiont of Brugia malayi 1 0 39 66084 species Wolbachia sp. wRi 1 0 1 0 48 163164 Wolbachia endosymbiont of Drosophila melanogaster species 1 0 246273 39 Wolbachia endosymbiont of Cimex lectularius species Wolbachia endosymbiont of Onchocerca volvulus species 51 77551 0 1 1 0 100901 53 Wolbachia endosymbiont of Onchocerca ochengi species 1 0 179 77038 species Wolbachia endosymbiont of Drosophila simulans 0 1 no rank 279 1699067 species Rickettsiales bacterium Ac37b 279 1528098 0 1 1 0 20 165 order Caulobacterales 17399 204458 family Caulobacteraceae 273 76892 17234 0 1 19 1 0 6 230 genus Caulobacter 8430 75 0 1 species Caulobacter vibrioides 155892 2661 0 1 species Caulobacter henricii 69395 1399 1 0 69666 1106 species Caulobacter mirabilis 1 0 88688 1264 Caulobacter segnis species no rank 1770 2648921 0 1 1770 366602 Caulobacter sp. K31 species 1 0 0 1 no rank 81440 648 1 0 1759059 648 Caulobacteraceae bacterium OTSz_A_272 species 5728 41275 Brevundimonas genus 168 7 1 0 2622653 2906 no rank 3 0 Brevundimonas sp. GW460-12-10-14-LB2 species 1827469 930 0 1 1938605 1251 Brevundimonas sp. LM2 species 1 0 1 0 1532555 725 species Brevundimonas sp. DS20 41276 625 species Brevundimonas vesicularis 1 0 0 1 Brevundimonas naejangsanensis species 1145 588932 0 1 Brevundimonas subvibrioides species 884 74313 genus Asticcacaulis 5 76890 929 0 1 2 0 1 Asticcacaulis excentricus species 78587 924 Phenylobacterium genus 11 1226 20 1 0 2 1215 284016 species Phenylobacterium zucineum 1 0 order 255473 503 0 2 family 255474 503 0 2 2 Parvularcula genus 208215 503 0 1 2 0 1 species Parvularcula bermudensis 501 208216 0 1 91 391 Rhodobacterales order 204455 68676 31989 68285 1185 family Rhodobacteraceae 90 0 1 2 0 1 360528 1202 Pelagibaca genus 30 Pelagibaca abyssi species 1172 1250539 0 1 2 0 1 188905 581 5 Jannaschia genus 2645469 576 no rank 1 0 290400 576 species Jannaschia sp. CCS1 1 0 5 0 1 302485 6561 116 genus Phaeobacter 1 0 612 1844006 species Phaeobacter porticola 0 1 species Phaeobacter gallaeciensis 60890 2051 species Phaeobacter piscinae 1580596 1735 0 1 species Phaeobacter inhibens 221822 2047 0 1 0 1 2 genus Pannonibacter 84 227873 2194 species Pannonibacter phragmitetus 121719 2110 0 1 2 0 1 367771 1570 2 Marinovum genus 1 0 1568 42444 species Marinovum algicola 9904 265 163 genus Paracoccus 9 1 0 0 1 Paracoccus zhejiangensis species 1077935 1357 species Paracoccus yeei 147645 1792 0 1 Paracoccus denitrificans species 1597 266 0 1 0 1 Paracoccus sp. CBA4604 species 2065379 1100 765 246570 no rank 1 0 Paracoccus sp. BM15 species 1529068 765 0 1 1 0 1099 1945662 species Paracoccus contaminans Paracoccus aminovorans species 1258 34004 0 1 34003 773 Paracoccus aminophilus species 1 0 1 0 1649279 884 genus species Ruegeria mobilis 379347 884 0 1 1 0 3 8 genus Ketogulonicigenium 1792 92944 0 1 Ketogulonicigenium robustum species 92947 937 0 1 Ketogulonicigenium vulgare species 847 92945 319 1759396 genus 1 0 no rank 2622455 319 0 1 319 1920883 Marivivens sp. JLT3646 species 1 0 2 0 1 285107 727 2 Thioclava genus Thioclava nitratireducens species 1915078 725 0 1 74030 860 3 Roseovarius genus 2 0 1 species Roseovarius mucosus 215743 857 0 1 1 0 2 Tateyamaria genus 3 865 299261 299262 862 Tateyamaria omphalii species 1 0 0 1 2 5 genus Halocynthiibacter 1579315 294 Halocynthiibacter arcticus species 1579316 289 0 1 1 0 5 genus Celeribacter 47 3133 875170 1208324 1088 Celeribacter indicus species 1 0 0 1 species Celeribacter manganoxidans 823 1411902 1758178 710 species Celeribacter ethanolicus 1 0 1 0 1397108 465 species Celeribacter marinus 245186 2 genus Loktanella 1 0 2 0 1 159345 1072 Roseibacterium genus 3 Roseibacterium elongatum species 159346 1069 0 1 genus 1215 2433 0 2 1 0 575 2434 Roseobacter denitrificans species species Roseobacter litoralis 640 42443 0 1 0 1 genus 1106 2211641 Loktanella vestfoldensis species 245188 1106 0 1 3 0 1 60136 2429 genus Sulfitobacter 2 1 0 1402135 1004 Sulfitobacter pseudonitzschiae species no rank 1423 196795 0 1 1 0 1917485 1423 species Sulfitobacter sp. AM1-D1 0 1 4 190 Rhodovulum genus 34008 2828 1289 35806 Rhodovulum sulfidophilum species 1 0 0 2 no rank 1349 2631432 1 0 726 308754 species Rhodovulum sp. MB263 species Rhodovulum sp. P5 1564506 623 0 1 4 genus Sagittula 2526 58842 1 0 2 0 1 no rank 2624628 2522 0 1 Sagittula sp. P11 species 2009329 2522 2 0 1 191028 1152 genus Leisingera 19 133924 1133 species Leisingera methylohalidivorans 1 0 1097466 1282 genus 1 0 0 1 Defluviimonas alba species 1335048 1282 1 genus Rhodobaca 635 119541 1 0 2 634 441209 Rhodobaca barguzinensis species 1 0 1 genus Planktomarina 1284657 328 0 1 2 0 1 species Planktomarina temperata 1284658 327 58840 1529 no rank 2 0 Rhodobacteraceae bacterium species 611 1904441 0 1 1 0 2033435 918 species Rhodobacteraceae bacterium QY30 genus Thalassococcus 4 436357 0 1 Rhodobacter genus 51 6513 1060 1 0 5 0 1 species Rhodobacter capsulatus 1441 1061 1 0 3336 1063 species Rhodobacter sphaeroides 1685 196779 no rank 2 0 1 0 607 1850250 Rhodobacter sp. LPB0142 species 1 0 2033869 1078 Rhodobacter sp. CZR27 species 0 1 2 genus Confluentimicrobium 7 1609958 1401 0 1 no rank 1394 2643318 0 1 species Confluentimicrobium sp. EMB200-NS6 1609966 1394 2 0 2841 263377 genus 1390 1229727 Thiobacimonas profunda species 1 0 1 0 1451 2640570 no rank 1 0 1792508 1451 Yangia sp. CCB-MM3 species 1 0 3 Ruegeria genus 5 2292 97050 89184 1536 Ruegeria pomeroyi species 1 0 0 1 no rank 2625375 751 1 0 292414 751 Ruegeria sp. TM1040 species 1017 309512 5 genus Dinoroseobacter 2 1 0 215813 1012 Dinoroseobacter shibae species 1 0 1 0 2 1 Antarctobacter genus 984 74032 1 0 74033 983 Antarctobacter heliothermus species 4 0 1 478070 3987 Labrenzia genus 65 Labrenzia aggregata species 1398 187304 0 1 2648686 2524 no rank 2 0 species Labrenzia sp. VG12 1354 2021862 0 1 1 0 1170 1674922 species Labrenzia sp. CP4 1071 53945 5 genus Octadecabacter 4 1 0 1 0 1458307 195 Octadecabacter temperatus species 0 1 Octadecabacter antarcticus species 1217908 646 1 0 225 53946 Octadecabacter arcticus species order 779 54526 0 7 6 0 1 1655514 591 1 family Pelagibacteraceae no rank 409 1655516 0 2 1 0 859653 111 alpha proteobacterium HIMB5 species 0 1 alpha proteobacterium HIMB59 species 744985 298 Candidatus Pelagibacter genus 1 198251 181 0 1 3 1 0 2647897 112 no rank 112 1002672 Candidatus Pelagibacter sp. IMCC9063 species 1 0 Candidatus Pelagibacter ubique species 198252 68 0 1 genus 2045213 188 0 1 0 1 Candidatus Fonsibacter ubiquis species 188 1925548 2 0 585 2800059 order 0 2 family 585 2800061 74317 585 Maricaulis genus 4 2 0 1 species Maricaulis maris 581 74318 0 1 27 Holosporales order 1921002 1191 0 1 6 1777752 245 family 1 0 genus 1521255 245 0 1 91604 245 species Candidatus Paracaedibacter acanthamoebae 1 0 0 1 family 44746 441 1 0 441 204454 no rank 0 1 endosymbiont of Acanthamoeba sp. UWC8 species 441 86106 family Caedimonadaceae 9 478 2100208 1 0 3 0 1 2 4 Candidatus Nucleicultrix genus 1509243 469 0 1 Candidatus Nucleicultrix amoebiphila species 1509244 465 66 0 1 204441 59915 826 order Rhodospirillales 41295 34642 728 family Rhodospirillaceae 30 0 1 883 1612157 Pararhodospirillum genus 3 2 1 0 880 1084 Pararhodospirillum photometricum species 1 0 1 0 2 genus Haematospirillum 2 363 1804663 1 0 361 1549855 Haematospirillum jordaniae species 0 1 2 85 genus Magnetospira 1182780 989 2685734 904 no rank 1 0 1 0 904 1288970 species Magnetospira sp. QH-2 1 0 3 40 genus Rhodospirillum 3251 1081 species Rhodospirillum rubrum 1512 1085 0 1 1 0 34018 1699 Rhodospirillum centenum species 1932 1543704 Niveispirillum genus 8 2 1 0 1 0 1612173 1924 species Niveispirillum cyanobacteriorum 354 genus Azospirillum 191 12767 0 1 5 Azospirillum brasilense species 3899 192 0 1 1 0 1512 1226968 Azospirillum humicireducens species 0 1 Azospirillum thiophilum species 528244 2464 1 0 193 4538 Azospirillum lipoferum species 1 0 3 31 Thalassospira genus 2225 168934 2048283 1347 species Thalassospira sp. CSC3H3 1 0 1 0 847 220697 species Thalassospira xiamenensis 2 0 1 171436 2039 Tistrella genus 98 171437 1941 Tistrella mobilis species 1 0 131 1263978 genus 1 0 1 0 131 1263979 Candidatus Endolissoclinum faulkneri species 111 Nitrospirillum genus 1543705 2422 0 1 2 1 0 2311 28077 species Nitrospirillum amazonense 1 0 5 109 genus Magnetospirillum 6912 13134 0 1 species Magnetospirillum gryphiswaldense 1878 55518 0 1 species Magnetospirillum magneticum 84159 1995 0 2 no rank 2930 2617991 1639348 1345 species Magnetospirillum sp. ME-1 1 0 1 0 1585 1663591 species Magnetospirillum sp. XM-1 35 1 0 24447 433 468 family Acetobacteraceae 32 Granulibacter genus 364409 2330 0 1 2 0 1 Granulibacter bethesdensis species 364410 2298 3 1 0 3139 441 Gluconobacter genus 76 0 1 species Gluconobacter albidus 318683 956 0 1 Gluconobacter oxydans species 2107 442 3 1 0 2111 522 genus Acidiphilium 59 0 1 Acidiphilium multivorum species 1057 62140 524 995 Acidiphilium cryptum species 1 0 2 0 1 89583 1009 13 genus Gluconacetobacter 0 1 species Gluconacetobacter diazotrophicus 33996 996 2 1 0 837 320496 5 Neoasaia genus 0 1 species Neoasaia chiangmaiensis 320497 832 213 genus Roseomonas 125216 3033 0 1 3 no rank 2617492 1367 0 1 Roseomonas sp. FDAARGOS_362 species 2018065 1367 0 1 1453 257708 Roseomonas gilardii species 1 0 777 153497 genus Kozakia 100 2 1 0 species Kozakia baliensis 153496 677 0 1 8 1 0 5621 434 68 genus Acetobacter 367 65959 Acetobacter pomorum species 1 0 Acetobacter persici species 1076596 789 0 1 985 104102 species Acetobacter tropicalis 1 0 1 0 438 1570 species Acetobacter pasteurianus species Acetobacter senegalensis 910 446692 0 1 606 151157 subgenus 1 0 0 1 species Acetobacter aceti 606 435 0 1 Acetobacter oryzifermentans species 326 1633874 0 1 2 Parasaccharibacter genus 2 1602345 603 Parasaccharibacter apium species 601 1510841 0 1 1 0 2 genus Asaia 1 661 91914 0 1 species Asaia bogorensis 91915 660 3858 1434011 103 genus Komagataeibacter 5 1 0 0 1 species Komagataeibacter xylinus 28448 1702 0 1 Komagataeibacter medellinensis species 1177712 404 654 33995 Komagataeibacter europaeus species 1 0 1 0 265960 995 species Komagataeibacter nataicola 1 0 209 Rhizobiales order 1770 177965 356 1 0 18 5 Bartonellaceae family 4397 772 1 0 17 Bartonella genus 47 4392 773 388640 93 species Bartonella australis 1 0 1 0 893 1686310 species Bartonella apis 0 6 no rank 1907 2645622 Bartonella sp. A1379B species 1933910 328 0 1 0 1 species Bartonella sp. JB15 1933906 93 1 0 515256 478 Bartonella sp. 1-1C species 1 0 328 1933912 species Bartonella sp. Raccoon60 587 1933904 Bartonella sp. WD16.2 species 1 0 1933907 93 species Bartonella sp. JB63 1 0 0 1 Bartonella clarridgeiae species 189 56426 1 0 94 33045 Bartonella grahamii species Bartonella bacilliformis species 774 93 0 1 85 803 Bartonella quintana species 1 0 1 0 38323 309 species Bartonella henselae 0 1 Bartonella ancashensis species 106 1318743 476 85701 species Bartonella tribocorum 1 0 species Bartonella vinsonii 33047 100 0 1 family Xanthobacteraceae 46 335928 5750 0 1 7 2 1 0 1599 152053 127 genus Starkeya 921 1472 species Starkeya novella 1 0 1537 279 Xanthobacter genus 30 2 1 0 0 1 species Xanthobacter autotrophicus 1507 280 genus Azorhizobium 52 2568 6 1 0 2 Azorhizobium caulinodans species 2516 7 0 1 1 0 19 81 family Hyphomicrobiaceae 11193 45401 0 1 4 33 genus Hyphomicrobium 81 3415 0 1 no rank 2619925 937 1 0 717785 937 species Hyphomicrobium sp. MC1 1 0 1427356 1126 species Hyphomicrobium nitrativorans 0 1 Hyphomicrobium denitrificans species 53399 1319 Blastochloris genus 23 59282 1023 0 1 2 0 1 Blastochloris viridis species 1079 1000 1 0 2 5 genus Filomicrobium 368 119044 species Candidatus Filomicrobium marinum 363 1608628 0 1 2 1 0 704 1068 19 Rhodomicrobium genus 685 1069 species Rhodomicrobium vannielii 1 0 0 1 2 genus Rhodoplanes 58 29407 1772 1714 2619116 no rank 1 0 1 0 674703 1714 Rhodoplanes sp. Z2-YC6860 species 46913 2917 53 genus Devosia 4 0 1 0 3 no rank 2864 196773 1643450 928 species Devosia sp. H5989 1 0 1297 1736675 species Devosia sp. A16 1 0 1 0 639 2083786 species Devosia sp. I507 1 0 2 10 genus Pelagibacterium 913 1082930 1 0 531813 903 Pelagibacterium halotolerans species 20 0 1 118882 7690 26 Brucellaceae family 4760 528 Ochrobactrum genus 44 5 1 0 571256 1360 Ochrobactrum pituitosum species 1 0 1 0 930 529 Ochrobactrum anthropi species 0 1 species Ochrobactrum pseudogrignonense 1429 419475 0 1 species Ochrobactrum sp. A44 997 271865 1560 Brucella genus 2904 234 1 0 14 33 444163 Brucella microti species 1 0 1 0 120576 131 Brucella pinnipedialis species species Brucella abortus 59 235 0 1 species Brucella vulpis 981386 177 0 1 122 120577 Brucella ceti species 1 0 0 1 Brucella canis species 36855 119 no rank 2632610 518 0 4 Brucella sp. 2002734562 species 1891098 16 0 1 0 1 Brucella sp. 09RB8910 species 186 1844051 0 1 species Brucella sp. 09RB8471 1149952 134 0 1 Brucella sp. 141012304 species 1885919 182 species Brucella melitensis 80 29459 0 1 1 0 49 236 Brucella ovis species 1 0 29461 56 Brucella suis species 4 0 1 2036754 2938 9 family Chelatococcaceae 3 0 1 28209 2929 65 genus Chelatococcus 1 0 1114 444444 species Chelatococcus daeguensis 1750 2638111 no rank 1 0 1 0 1750 1702325 species Chelatococcus sp. CO-6 family Beijerinckiaceae 1 45404 1354 0 1 5 0 1 2 22 genus Methylocella 120652 850 1 0 828 199596 Methylocella silvestris species 0 1 2 11 Beijerinckia genus 532 503 Beijerinckia indica species 492 533 0 1 1 0 15 79 Methylobacteriaceae family 21089 119045 6191 2282523 genus 3 0 0 1 species Methylobacterium extorquens 3547 408 species Methylobacterium zatmanii 730 29429 0 1 1 0 1914 223967 Methylobacterium populi species 9 1 0 13020 407 genus Methylobacterium 836 3 0 2615210 4586 no rank species Methylobacterium sp. AMS5 925818 1287 0 1 1479019 1815 Methylobacterium sp. C1 species 1 0 426117 1484 species Methylobacterium sp. 4-46 1 0 1 0 1512 334852 Methylobacterium oryzae species 0 1 Methylobacterium aquaticum species 1626 270351 31998 1980 species Methylobacterium radiotolerans 1 0 0 1 species Methylobacterium phyllosphaerae 1335 418223 0 1 species Methylobacterium nodulans 1145 114616 2 1 0 1799 186650 Microvirga genus 32 1882682 1767 Microvirga ossetica species 1 0 3180 119042 no rank 6 0 1484898 857 Methyloceanibacter genus 12 2 0 1 845 1384459 Methyloceanibacter caenitepidi species 1 0 10 genus Pseudorhodoplanes 1734920 1237 0 1 2 1227 1235591 species Pseudorhodoplanes sinuspersici 1 0 1 0 2 10 genus Hartmannibacter 1086 1572860 1 0 1482074 1076 Hartmannibacter diazotrophicus species 0 1 26 family Bradyrhizobiaceae 419 41294 30807 1 0 2 Oligotropha genus 15 577 40136 1 0 40137 562 Oligotropha carboxidovorans species 1331 911 Nitrobacter genus 11 3 1 0 1 0 913 605 Nitrobacter winogradskyi species 1 0 715 912 species Nitrobacter hamburgensis 7319 1073 Rhodopseudomonas genus 57 2 1 0 7262 1076 Rhodopseudomonas palustris species 1 0 6 genus Variibacter 1649510 807 0 1 2 1 0 801 1333996 Variibacter gotjawalensis species 11 0 1 374 15691 436 genus Bradyrhizobium 0 1 Bradyrhizobium diazoefficiens species 2806 1355477 no rank 7711 2631580 0 6 species Bradyrhizobium sp. SK17 1576 2057741 0 1 species Bradyrhizobium sp. ORS 278 114615 1307 0 1 1134 115808 Bradyrhizobium sp. ORS 285 species 1 0 Bradyrhizobium sp. BTAi1 species 1460 288000 0 1 0 1 species Bradyrhizobium sp. CCGE-LA001 1076 1223566 1 0 376 1158 Bradyrhizobium sp. species 1168 1274631 Bradyrhizobium icense species 1 0 0 1 species Bradyrhizobium oligotrophicum 44255 1174 Bradyrhizobium japonicum species 2396 375 0 1 genus Bosea 111 85413 4663 0 1 5 0 1 species Bosea vaviloviae 1262 1526658 2653178 3290 no rank 3 0 0 1 Bosea sp. PAMC 26642 species 1792307 780 0 1 Bosea sp. RAC05 species 1842539 1110 0 1 Bosea sp. AS-1 species 2015316 1400 0 1 6 12 family Methylocystaceae 31993 2391 0 1 2 16 genus Methylosinus 425 1003 987 426 species Methylosinus trichosporium 1 0 Methylocystis genus 49 1376 133 1 0 3 0 1 species Methylocystis bryophila 655015 710 0 1 no rank 2625913 617 187303 617 species Methylocystis sp. SC2 1 0 837 family Rhizobiaceae 63026 82115 1 0 53 9 genus Shinella 2099 323620 1 0 2 no rank 2643062 2090 0 1 0 1 Shinella sp. HZN7 species 879274 2090 227290 44871 no rank 34 0 25 1 0 31218 379 2503 Rhizobium genus species Rhizobium etli 29449 3589 0 1 2806 56730 Rhizobium gallicum species 1 0 384 7167 Rhizobium leguminosarum species 1 0 0 19 no rank 2613769 11993 species Rhizobium sp. N113 4 1703960 0 1 2020311 698 species Rhizobium sp. Kim5 1 0 826 1703969 species Rhizobium sp. N324 1 0 1 0 1571470 1392 species Rhizobium sp. ACO-34A 279 1703961 Rhizobium sp. N1314 species 1 0 1116 1914541 Rhizobium sp. Y9 species 1 0 1 0 1355 2028343 Rhizobium sp. 10195 species 1703967 7 species Rhizobium sp. N741 1 0 1 0 1006 2048897 Rhizobium sp. NXC24 species Rhizobium sp. CIAT894 species 936 2020312 0 1 695 1301032 species Rhizobium sp. IE4771 1 0 0 1 Rhizobium sp. NT-26 species 1125847 613 1 0 298 2020313 species Rhizobium sp. TAL182 1981173 621 Rhizobium sp. NXC14 species 1 0 1869170 867 Rhizobium sp. S41 species 1 0 0 1 Rhizobium sp. IRBG74 species 994 424182 1 0 1703968 1 species Rhizobium sp. N871 species Rhizobium sp. N731 279 1703966 0 1 0 1 species Rhizobium sp. N1341 1703962 6 0 1 species Rhizobium tropici 398 1060 396 2100 Rhizobium phaseoli species 1 0 0 1 2 genus Neorhizobium 8 1525371 2360 species Neorhizobium galegae 399 2352 0 1 Agrobacterium genus 143 357 11293 0 1 7 2 0 1183400 6192 species group 0 1 Agrobacterium fabrum species 1176649 1355 Agrobacterium tumefaciens species 358 4837 0 1 0 2 no rank 2632611 2124 861208 1259 Agrobacterium sp. H13-3 species 1 0 0 1 Agrobacterium sp. RAC06 species 1842536 865 Agrobacterium vitis species 373 1639 0 1 1 0 1195 359 species Agrobacterium rhizogenes 1 0 6 10 genus Liberibacter 609 34019 0 1 species Liberibacter crescens 132 1273132 109 34020 Candidatus Liberibacter africanus species 1 0 species Candidatus Liberibacter solanacearum 175 556287 0 1 species Candidatus Liberibacter asiaticus 48 34021 0 1 1 0 135 309868 species Candidatus Liberibacter americanus 14610 227292 no rank 10 0 0 1 3 87 genus Ensifer 106591 3045 0 1 species Ensifer adhaerens 106592 1308 0 1 Ensifer sojae species 716925 1650 7 0 1 28105 11565 138 genus Sinorhizobium 110321 788 species Sinorhizobium medicae 1 0 2766 663276 species group 1 0 Sinorhizobium fredii species 2766 380 0 1 species Sinorhizobium meliloti 3126 382 0 1 1 0 194963 2002 Sinorhizobium americanum species 2 0 2613772 2745 no rank 0 1 species Sinorhizobium sp. CCBAU 05631 794846 1115 1 0 1842534 1630 species Sinorhizobium sp. RAC02 20 0 1 69277 16719 family Phyllobacteriaceae 160 2 1 0 1469 31988 genus Aminobacter 18 1 0 83263 1451 Aminobacter aminovorans species 28100 1254 13 Phyllobacterium genus 2 0 1 0 1 Phyllobacterium zundukense species 1867719 1241 0 1 2 Nitratireductor genus 13 245876 1090 1 0 1077 472175 species Nitratireductor basaltis 287 genus Mesorhizobium 10816 68287 1 0 9 0 1 Mesorhizobium opportunistum species 1514 593909 0 1 species Mesorhizobium amorphae 71433 1068 0 1 Mesorhizobium sp. B7 species 1670800 906 0 1 no rank 1600 325217 Mesorhizobium sp. WSM1497 species 278153 1600 0 1 species Mesorhizobium ciceri 1837 39645 0 1 0 1 species Mesorhizobium australicum 1023 536018 Mesorhizobium japonicum species 2066070 1047 0 1 0 1 species Mesorhizobium loti 381 1534 1023 449972 Chelativorans genus 12 2 1 0 1 0 2643807 1011 no rank Chelativorans sp. BNC1 species 266779 1011 0 1 1 0 2 genus Hoeflea 7 907 274591 1 0 900 2614931 no rank 0 1 species Hoeflea sp. IMCC20628 900 1620421 0 2 family 605 119043 2 0 1 256616 605 9 genus Parvibaculum 1 0 596 256618 species Parvibaculum lavamentivorans 5056 255475 96 Aurantimonadaceae family 7 1 0 Martelella genus 166 4097 293088 1 0 4 Martelella mediterranea species 1293 293089 0 1 0 1 species Martelella endophytica 1486262 1581 0 1 no rank 2629616 1057 686597 1057 Martelella sp. AD-3 species 1 0 863 414371 11 Aureimonas genus 2 1 0 no rank 852 2615206 0 1 852 1349819 species Aureimonas sp. AU20 1 0 Sphingomonadales order 522 60332 204457 1 0 82 45450 41297 636 family Sphingomonadaceae 59 1 0 13687 13351 Sphingomonas genus 367 15 0 1 1 0 1086 1549858 Sphingomonas taxi species Sphingomonas melonis species 793 152682 0 1 1 0 827 93064 Sphingomonas koreensis species 2184 160791 Sphingomonas wittichii species 1180 2 1 0 1004 1283312 strain Sphingomonas sp. DC-6 1 0 Sphingomonas hengshuiensis species 539 1609977 0 1 5374 196159 no rank 6 0 786 1390395 species Sphingomonas sp. LK11 1 0 851 1327635 species Sphingomonas sp. Cra20 1 0 1 0 1030 745310 Sphingomonas sp. MM-1 species 1938607 708 Sphingomonas sp. LM7 species 1 0 species Sphingomonas sp. KC8 1054 1030157 0 1 945 1961362 Sphingomonas sp. NIC1 species 1 0 397260 1274 species Sphingomonas sanxanigenens 1 0 0 1 species Sphingomonas panacis 1560345 907 2 0 1 72173 903 genus Citromicrobium 18 1 0 2630544 885 no rank 1634516 885 Citromicrobium sp. JL477 species 1 0 0 1 genus 2709685 584 1 0 584 266812 species Sphingorhabdus flavimaris 5 0 1 165696 4311 genus Novosphingobium 47 0 1 species Novosphingobium pentaromativorans 883 205844 0 1 Novosphingobium resinovorum species 1301 158500 0 1 Novosphingobium aromaticivorans species 852 48935 no rank 2644732 1228 0 1 0 1 species Novosphingobium sp. PP1Y 702113 1228 1 0 2685927 1050 genus 1921510 1050 Sphingomonas sp. JJ-A5 species 1 0 genus Sphingobium 271 165695 12074 0 1 15 0 1 Sphingobium hydrophobicum species 1673076 901 1 0 46429 1205 species Sphingobium chlorophenolicum Sphingobium indicum species 672 332055 0 1 6 0 2611147 4809 no rank 1855519 515 Sphingobium sp. EP60837 species 1 0 Sphingobium sp. MI1205 species 407020 982 0 1 0 1 Sphingobium sp. SYK-6 species 670 627192 1315974 840 Sphingobium sp. TKS species 1 0 0 1 species Sphingobium sp. YBL2 819 484429 0 1 species Sphingobium sp. RAC03 983 1843368 1 0 745 13690 species Sphingobium yanoikuyae 826 332056 species Sphingobium japonicum 1 0 120107 845 species Sphingobium cloacae 1 0 0 1 Sphingobium baderi species 1332080 1085 715 76947 Sphingobium herbicidovorans species 1 0 0 1 2 Rhizorhabdus genus 7 1649486 1114 0 1 species Rhizorhabdus dicambivorans 1850238 1107 1727 1434046 102 Sphingorhabdus genus 3 1 0 2614947 1625 no rank 2 0 947 1806885 Sphingorhabdus sp. M41 species 1 0 1 0 2077182 678 species Sphingorhabdus sp. YGSMI21 7503 165697 genus Sphingopyxis 210 10 1 0 0 1 Sphingopyxis terrae species 33052 616 Sphingopyxis macrogoltabida species 1497 33050 0 1 0 1 species Sphingopyxis granuli 267128 794 0 1 Sphingopyxis alaskensis species 717 117207 no rank 2901 2614943 0 4 1913578 214 Sphingopyxis sp. LPB0140 species 1 0 729 1866325 species Sphingopyxis sp. MG 1 0 Sphingopyxis sp. QXT-31 species 1357916 643 0 1 1 0 292913 1315 Sphingopyxis sp. 113P3 species 1 0 768 1515612 Sphingopyxis fribergensis species 2 0 1 541 1276 Zymomonas genus 27 542 1249 Zymomonas mobilis species 1 0 150203 921 genus Blastomonas 8 2 0 1 0 1 no rank 2626550 913 0 1 Blastomonas sp. RAC04 species 1842535 913 0 1 22 Erythrobacteraceae family 350 335929 14360 6 0 3702 2800788 no rank 3 0 1 1111 1459 37 Porphyrobacter genus 0 2 no rank 1422 2683265 1 0 2023229 766 species Porphyrobacter HT-58-2 0 1 species Porphyrobacter sp. LM 6 656 1896196 genus Erythrobacter 56 1041 2243 0 1 3 0 1 species Erythrobacter litoralis 39960 1385 802 1112 Porphyrobacter neustonensis species 1 0 2552 361177 71 Altererythrobacter genus 4 1 0 0 1 species Altererythrobacter atlanticus 1267766 1105 species Altererythrobacter epoxidivorans 603 361183 0 1 1 0 476157 773 Altererythrobacter ishigakiensis species 1 0 2800682 876 genus species Altererythrobacter namhicola 876 645517 0 1 genus 485 2800685 0 1 485 543877 species Altererythrobacter marensis 1 0 0 2 genus 1888 1855416 0 1 species Erythrobacter flavus 192812 1022 0 1 species Erythrobacter seohaensis 266951 866 2 0 2800686 1533 genus 667 692370 species Altererythrobacter dongtanensis 1 0 1 0 1982042 866 Altererythrobacter mangrovi species 3 1 0 1517 1295327 51 Croceicoccus genus 1348774 769 Croceicoccus naphthovorans species 1 0 0 1 Croceicoccus marinus species 697 450378 0 2 genus 1457 2800681 0 1 Erythrobacter gangjinensis species 502682 990 467 1648404 species Erythrobacter atlanticus 1 0 82117 3878 no rank 7 0 Polymorphum genus 10 991903 935 0 1 2 991904 925 species Polymorphum gilvum 1 0 213485 827 4 Micavibrio genus 2 0 1 0 1 Micavibrio aeruginosavorus species 349221 823 Phreatobacter genus 19 1632780 1745 0 1 2 0 1 Phreatobacter sp. S-12 species 1726 1868589 0 1 clade 371 62654 1 0 767891 371 genus 0 1 species Candidatus Puniceispirillum marinum 371 767892 68525 215918 subphylum 198 0 29547 66347 46 class Epsilonproteobacteria 71 0 1 213849 64944 Campylobacterales order 648 66 0 1 0 5 family 2771472 2154 0 1 3 20 genus Sulfurovum 265570 1460 2646778 608 no rank 1 0 Sulfurovum sp. NBC37-1 species 387093 608 0 1 206403 832 species Sulfurovum lithotrophicum 1 0 0 1 2 genus Nitratifractor 1 269260 694 species Nitratifractor salsuginis 269261 693 0 1 1242 family Campylobacteraceae 72294 55257 0 1 41 no rank 2321108 3019 0 5 3 0 1 28196 1695 10 Arcobacter genus 28197 659 species Arcobacter butzleri 1 0 species Arcobacter nitrofigilis 1026 28199 0 1 1 0 709 2321187 genus 1 0 1850254 709 Arcobacter sp. LPB0137 species 0 1 no rank 615 2321207 944547 615 species Arcobacter sp. L 1 0 47222 194 243 Campylobacter genus 26 1 0 1 0 341 497724 species Campylobacter subantarcticus 0 1 Campylobacter curvus species 200 417 1 0 210 374106 species Campylobacter cuniculorum 522485 149 Campylobacter avium species 1 0 0 1 species Campylobacter helveticus 158 28898 0 1 species Campylobacter sputorum 526 206 Campylobacter gracilis species 294 824 0 1 2593542 1280 no rank 4 0 0 1 Campylobacter sp. RM8964 species 480 1660074 1 0 1500960 346 Campylobacter sp. RM16704 species Campylobacter sp. RM12175 species 1660076 220 0 1 Campylobacter sp. RM6137 species 1660073 234 0 1 0 1 species Campylobacter lanienae 75658 744 0 1 Campylobacter iguaniorum species 575 1244531 488546 158 Campylobacter peloridis species 1 0 1 0 19858 197 Campylobacter jejuni species 198 310 Campylobacter hyointestinalis species 1 0 827 323 species Campylobacter ureolyticus 1 0 0 1 species Campylobacter coli 15962 195 Campylobacter insulaenigrae species 457 260714 0 1 1069 76517 species Campylobacter hominis 1 0 199 624 Campylobacter concisus species 1 0 1 0 1354 196 Campylobacter fetus species 1 0 1277 201 species Campylobacter lari 1 0 1965231 501 Campylobacter pinnipediorum species 1031542 392 species Campylobacter volucris 1 0 3774 57665 28 genus Sulfurospirillum 9 1 0 1 0 194424 211 species Sulfurospirillum halorespirans 44674 623 Sulfurospirillum barnesii species 1 0 366522 274 species Sulfurospirillum cavolei 1 0 960 66821 Sulfurospirillum multivorans species 1 0 0 1 Sulfurospirillum deleyianum species 159 65553 3 0 1519 2618290 no rank 0 1 species Sulfurospirillum sp. JPD-1 603 220622 0 1 species Sulfurospirillum sp. UCH001 1581011 596 0 1 Sulfurospirillum sp. SL2-1 species 320 1986224 0 5 family 2771471 1179 0 1 3 5 genus Sulfurimonas 202746 806 species Sulfurimonas denitrificans 162 39766 0 1 0 1 Sulfurimonas autotrophica species 639 202747 2 1 0 373 286130 1 genus Sulfuricurvum 372 148813 species Sulfuricurvum kujiense 1 0 14 1 0 5706 72293 11 family Helicobacteraceae 1 0 12 19 Helicobacter genus 5184 209 Helicobacter typhlonius species 76936 110 0 1 214 102 Helicobacter felis species 1 0 0 1 species Helicobacter pylori 210 2756 212 65 species Helicobacter acinonychis 1 0 160 213 species Helicobacter cinaedi 1 0 0 1 species Helicobacter mustelae 217 402 1 0 2593540 495 no rank 495 222136 species Helicobacter sp. MIT 01-6242 1 0 species Helicobacter hepaticus 32025 411 0 1 37372 271 species Helicobacter bilis 1 0 217 138563 species Helicobacter cetorum 1 0 0 1 species Helicobacter himalayensis 176 1591088 843 511 genus 1 0 Wolinella succinogenes species 511 844 0 1 4 0 235899 1357 order family 829 224467 0 2 21 genus Nautilia 191291 829 0 1 2 808 244787 species Nautilia profundicola 1 0 0 2 family 2795691 528 2 0 1 269258 528 Nitratiruptor genus 1 0 1 no rank 527 2624044 387092 527 Nitratiruptor sp. SB155-2 species 1 0 1 0 127 class Deltaproteobacteria 284 149571 28221 order 809 213113 0 5 809 117942 family Desulfurellaceae 15 5 1 0 2 0 1 33001 241 genus Desulfurella 8 1 0 33002 233 species Desulfurella acetivorans 84404 553 genus Hippea 3 2 0 1 0 1 species Hippea maritima 550 84405 order Desulfovibrionales 704 57129 213115 1 0 26 2 Desulfohalobiaceae family 597 213117 1 0 3 2 0 1 45662 595 genus Desulfohalobium 2 45663 593 species Desulfohalobium retbaense 1 0 5054 213116 186 Desulfomicrobiaceae family 4 1 0 3 0 1 898 4868 genus Desulfomicrobium 30 Desulfomicrobium orale species 132132 2222 0 1 species Desulfomicrobium baculatum 899 2616 0 1 18 0 1 194924 50774 family Desulfovibrionaceae 232 2582840 2143 genus 1 0 species Desulfovibrio africanus 2143 873 0 1 2794998 1200 genus 1 0 880 1200 Desulfovibrio salexigens species 1 0 872 38902 Desulfovibrio genus 207 9 0 1 Desulfovibrio vulgaris species 9824 881 0 1 0 1 Desulfovibrio magneticus species 2963 184917 Desulfovibrio piger species 901 7944 0 1 0 1 Desulfovibrio alaskensis species 58180 2261 1 0 1725232 987 Candidatus Desulfovibrio trichonymphae species no rank 2916 2593640 0 1 0 1 Desulfovibrio sp. G11 species 631220 2916 species Desulfovibrio desulfuricans 6411 876 0 1 Desulfovibrio fairfieldensis species 44742 5389 0 1 4 1 0 7422 2035811 Pseudodesulfovibrio genus 63 species Pseudodesulfovibrio aespoeensis 2450 182210 0 1 Pseudodesulfovibrio profundus species 57320 1231 0 1 1 0 1716143 3678 species Pseudodesulfovibrio indicus 1 genus Lawsonia 41707 875 0 1 2 0 1 Lawsonia intracellularis species 29546 874 38 1 0 44750 29 Myxococcales order 711 0 8 suborder 80812 6913 10 Sandaracinaceae family 1700 1055686 1 0 3 1 0 2 genus Sandaracinus 26 1690 1055688 0 1 Sandaracinus amylolyticus species 1664 927083 5 1 0 5213 49 Polyangiaceae family 47 1 0 2 4 genus Chondromyces 1219 50 Chondromyces crocatus species 1215 52 0 1 2 0 1 39643 3947 38 genus Sorangium species Sorangium cellulosum 3909 56 0 1 suborder 34534 80811 0 26 family Archangiaceae 119 8430 39 1 0 9 1729 40 9 Stigmatella genus 2 1 0 1720 41 Stigmatella aurantiaca species 1 0 42 1594 18 genus Cystobacter 2 0 1 1 0 43 1576 Cystobacter fuscus species 2 1 0 1833 44 genus Melittangium 19 83453 1814 Melittangium boletus species 1 0 2 0 1 47 3155 genus Archangium 23 species Archangium gephyra 3132 48 0 1 8 Vulgatibacteraceae family 1524213 1376 0 1 3 0 1 2 6 genus Vulgatibacter 1524214 1368 1391653 1362 Vulgatibacter incomptus species 1 0 family Myxococcaceae 126 31 17063 0 1 9 5 0 1 32 11077 567 genus Myxococcus Myxococcus hansupus species 1297742 2088 0 1 1 0 4979 33 Myxococcus fulvus species 0 1 Myxococcus stipitatus species 1664 83455 species Myxococcus xanthus 34 1779 0 1 5860 83461 Corallococcus genus 45 3 1 0 2320 35 species Myxococcus macrosporus 1 0 1 0 184914 3495 Corallococcus coralloides species 59 Anaeromyxobacteraceae family 7665 1524215 1 0 5 4 0 1 161492 7606 Anaeromyxobacter genus 201 0 2 no rank 2620896 3809 0 1 species Anaeromyxobacter sp. Fw109-5 1713 404589 0 1 species Anaeromyxobacter sp. K 447217 2096 161493 3596 species Anaeromyxobacter dehalogenans 1 0 0 3 suborder 224462 2592 1 0 3 family Kofleriaceae 38 2592 224464 Haliangium genus 189 2554 162027 1 0 2 2365 80816 species Haliangium ochraceum 1 0 Desulfobacterales order 93 10606 213118 1 0 18 9 0 1 213119 5643 Desulfobacteraceae family 43 3 genus Desulfobacterium 940 2295 1 0 2 2296 937 species Desulfobacterium autotrophicum 1 0 28222 593 genus 1 0 1 0 28223 593 Desulfobacula toluolica species genus Desulfococcus 10 2867 896 1 0 3 1 0 897 1531 Desulfococcus multivorans species 1 0 1326 181663 species Desulfococcus oleovorans 0 1 2 5 Desulfatibacillum genus 218207 1200 0 1 Desulfatibacillum alkenivorans species 259354 1195 8 1 0 4870 213121 family Desulfobulbaceae 9 0 1 genus 526 53318 1 0 526 65555 species Desulfocapsa sulfexigens 109168 884 genus Desulfotalea 5 2 0 1 1 0 84980 879 species Desulfotalea psychrophila 1 0 2 genus Desulfurivibrio 2 1511 427922 427923 1509 species Desulfurivibrio alkaliphilus 1 0 2 0 1 893 1940 Desulfobulbus genus 11 0 1 Desulfobulbus sp. ORNL species 1929 1986146 24 1 0 29944 69541 442 Desulfuromonadales order 0 1 9 Desulfuromonadaceae family 175 213421 9280 0 1 5 52 Pelobacter genus 18 6103 1 0 2733 29543 Pelobacter propionicus species 0 1 species Pelobacter acetylenicus 29542 1224 1 0 2620299 786 no rank species Pelobacter sp. SFB93 1842532 786 0 1 1308 19 Pelobacter carbinolicus species 1 0 3 0 1 890 3002 24 genus Desulfuromonas 1 0 2614637 1826 no rank 1826 1823759 Desulfuromonas sp. DDH964 species 1 0 1603606 1152 Desulfuromonas soudanensis species 1 0 213422 20222 family Geobacteraceae 110 14 0 1 167 Geobacter genus 18563 28231 1 0 11 28232 1390 Geobacter metallireducens species 1 0 Geobacter uraniireducens species 351604 1708 0 1 0 1 Geobacter sulfurreducens species 35554 1614 225194 1948 species Geobacter bemidjiensis 1 0 Geobacter anodireducens species 1340425 1727 0 1 2627627 4718 no rank 2 0 443144 2000 Geobacter sp. M21 species 1 0 0 1 species Geobacter sp. M18 2718 443143 2041 313985 Geobacter lovleyi species 1 0 species Geobacter daltonii 1203471 1334 0 1 species Geobacter pickeringii 1916 345632 0 1 2 1 0 1549 392332 8 Geoalkalibacter genus 0 1 Geoalkalibacter subterraneus species 1541 483547 1 0 11 order Syntrophobacterales 15 3854 213462 17 family Syntrophaceae 2562 213468 1 0 7 0 1 2 genus Desulfobacca 1 60892 820 0 1 species Desulfobacca acetoxidans 60893 819 1 genus Desulfomonile 1076 2357 1 0 2 Desulfomonile tiedjei species 2358 1075 0 1 0 1 2 7 genus Syntrophus 43773 649 642 316277 species Syntrophus aciditrophicus 1 0 family Syntrophobacteraceae 6 213465 1277 0 1 3 1271 29526 Syntrophobacter genus 4 2 1 0 1 0 1267 119484 species Syntrophobacter fumaroxidans 52 order Desulfarculales 2195 453227 1 0 4 0 1 3 38 family Desulfarculaceae 453228 2143 453229 2105 Desulfarculus genus 8 2 0 1 0 1 Desulfarculus baarsii species 2097 453230 1553900 3295 class 10 0 5 0 1 2024979 1011 order Bacteriovoracales 1 2 0 626 1652132 family 1 Halobacteriovorax genus 626 1652133 1 0 2 625 97084 Halobacteriovorax marinus species 1 0 family 384 263369 0 2 146784 384 6 genus Bacteriovorax 2 0 1 0 1 Bacteriovorax stolpii species 960 378 0 1 5 12 order Bdellovibrionales 213481 2284 213483 2272 Bdellovibrionaceae family 5 4 0 1 958 2267 genus Bdellovibrio 2 3 0 1 Bdellovibrio bacteriovorus species 959 1790 0 1 Bdellovibrio exovorus species 475 453816 0 1 5 0 580370 1683 class 5 0 1 580371 1683 Mariprofundales order 8 0 1 4 family Mariprofundaceae 2 580372 1675 1 0 3 6 genus Mariprofundus 1673 377315 Mariprofundus ferrinatatus species 900 1921087 0 1 0 1 species Mariprofundus aestuarium 767 1921086 88 0 1783257 37781 clade 33 0 14645 203682 phylum 1 0 7 class Phycisphaerae 13 2706 666505 order 1585 2483366 0 2 family 2483367 1585 0 2 genus 1585 2483368 0 2 677 1940790 Phycisphaerae bacterium L21-RPul-D3 species 1 0 0 1 Phycisphaerae bacterium ST-PulAB-D4 species 908 1941349 4 1 0 1108 666506 Phycisphaerales order 18 0 1 3 9 family Phycisphaeraceae 666507 1090 666508 1081 2 genus Phycisphaera 2 0 1 Phycisphaera mikurensis species 547188 1079 0 1 203683 11323 75 class Planctomycetia 24 0 1 0 1 9 208 Planctomycetales order 112 5080 20 family Planctomycetaceae 126 4872 0 1 8 genus 534 1649490 0 1 species Rubinisphaera brasiliensis 119 534 0 1 17 genus Planctomyces 118 2933 0 1 3 no rank 2648843 2916 0 2 935 1632864 species Planctomyces sp. SH-PL14 1 0 0 1 species Planctomyces sp. SH-PL62 1636152 1981 1936111 913 genus Fuerstia 8 2 0 1 species Fuerstia marisgermanicae 1891926 905 0 1 1 0 1649480 472 genus species Planctopirus limnophila 120 472 0 1 4 0 1940 2691354 order 2691358 914 family 2 0 0 1 2 1 Thermogutta genus 1676125 914 0 1 species Thermogutta terrifontis 913 1331910 family 2691357 1026 0 2 1 0 688 265488 genus Rhodopirellula baltica species 688 265606 0 1 338 123 genus 1 0 Pirellula staleyi species 125 338 0 1 0 7 order 2691356 3284 3284 1763524 15 family Isosphaeraceae 7 1 0 1763521 1622 genus Paludisphaera 9 2 0 1 1613 1387353 Paludisphaera borealis species 1 0 genus Isosphaera 2 127 865 0 1 2 1 0 128 863 Isosphaera pallida species 0 1 2 2 Singulisphaera genus 466152 782 0 1 species Singulisphaera acidiphila 466153 780 3 0 2691355 944 order 3 1 0 944 1914233 3 family Gemmataceae 941 113 genus Gemmata 10 2 1 0 931 2622970 no rank 1 0 0 1 Gemmata sp. SH-PL17 species 1630693 931 0 2 class 2517206 616 1 0 2 order Candidatus Brocadiales 2 616 1127829 family 614 1127830 0 1 genus 380738 614 0 1 174633 614 Candidatus Kuenenia stuttgartiensis species 1 0 5 0 1292 134625 phylum 1292 1921781 5 class Kiritimatiellae 5 1 0 4 1 0 1287 1921782 4 Kiritimatiellales order 3 0 1 1921783 1283 Kiritimatiellaceae family 2 0 1 2 genus Kiritimatiella 4 1921784 1281 0 1 species Kiritimatiella glycovorans 1307763 1277 27 1 0 14083 74201 2 phylum Verrucomicrobia 3 1 0 173 134549 1 class Spartobacteria genus Candidatus Xiphinematobacter 9 134550 172 0 1 2 1 0 163 2648876 no rank 163 1704307 species Candidatus Xiphinematobacter sp. Idaho Grape 1 0 2935 417295 no rank 2 0 1 0 2026799 1520 species Verrucomicrobia bacterium species Verrucomicrobia bacterium IMCC26134 1637999 1415 0 1 class 1955630 427 0 3 3 0 1 717963 427 order Methylacidiphilales 2 717964 425 family 2 0 511745 425 genus 2 0 1 0 591154 144 Methylacidiphilum fumariolicum species species Methylacidiphilum infernorum 281 511746 0 1 12 class Verrucomicrobiae 203494 3885 0 1 6 5 1 0 3873 48461 26 order Verrucomicrobiales 0 1 4 Akkermansiaceae family 29 1647988 3847 239934 3818 Akkermansia genus 11 3 0 1 Akkermansia glycaniphila species 1623 1679444 0 1 2184 239935 species Akkermansia muciniphila 1 0 class Opitutae 72 414999 6661 0 1 12 0 1 4 Puniceicoccales order 1 415001 679 3 1 0 678 415002 Puniceicoccaceae family 8 0 1 2 9 Coraliomargarita genus 442430 670 661 395922 Coraliomargarita akajimensis species 1 0 7 1 0 5910 415000 59 order Opitutales 6 0 1 134623 5851 48 family Opitutaceae no rank 1978 278955 0 1 794903 1978 Opitutaceae bacterium TAV5 species 1 0 0 1 2 181 genus Lacunisphaera 1961799 2665 2484 1838286 Lacunisphaera limnophila species 1 0 genus Opitutus 7 1160 178440 1 0 2 Opitutus terrae species 107709 1153 0 1 3 0 5940 256845 phylum 23 Lentisphaeria class 1313211 5940 0 1 3 2274 Victivallales order 278082 5917 0 1 2 1 0 1674876 3643 no rank 3643 2094242 species Victivallales bacterium CCUG 44730 1 0 0 20 phylum 1821 204428 5 class Chlamydiia 204429 1821 0 1 20 Chlamydiales order 4 1016 51291 1 0 13 12 0 809 1012 family no rank 1012 1113537 0 12 12 1 0 1012 810 Chlamydia genus 2 Chlamydia trachomatis species 96 813 0 1 Chlamydia pecorum species 52 85991 0 1 0 1 Chlamydia pneumoniae species 83558 35 0 1 Chlamydia suis species 83559 90 1 0 50 1457141 species Chlamydia avium 0 1 species Chlamydia caviae 21 83557 83556 309 species Chlamydia felis 1 0 Chlamydia abortus species 62 83555 0 1 species Chlamydia gallinacea 1457153 84 0 1 0 1 species Chlamydia psittaci 83554 81 Chlamydia muridarum species 130 83560 0 1 order Parachlamydiales 4 1963360 800 0 1 6 family 92714 203 0 1 71666 203 genus 1 0 species Waddlia chondrophila 71667 203 0 1 77 92712 Simkaniaceae family 1 2 1 0 0 1 genus 76 34093 83561 76 species Simkania negevensis 1 0 2 0 516 92713 family genus 83551 268 0 1 1 0 268 83552 Parachlamydia acanthamoebae species genus 282132 248 0 1 Candidatus Protochlamydia naegleriophila species 248 389348 0 1 13 0 4820 40117 phylum class Nitrospira 6 203693 4820 0 1 13 0 1 12 order Nitrospirales 49 189778 4814 189779 4765 15 family Nitrospiraceae 11 0 1 3126 1234 Nitrospira genus 7 5 1 0 0 1 Nitrospira moscoviensis species 42253 975 330214 565 species Nitrospira defluvii 1 0 0 1 Candidatus Nitrospira inopinata species 611 1715989 1 0 968 1325564 Nitrospira japonica species 28261 423 genus 1 0 0 1 species Thermodesulfovibrio yellowstonii 423 28262 1201 179 1 Leptospirillum genus 4 1 0 0 1 species group 417 655606 180 417 species Leptospirillum ferrooxidans 1 0 1 0 461 261386 species group 461 178606 species Leptospirillum ferriphilum 1 0 322 261385 species group 1 0 0 1 Leptospirillum sp. Group II 'CF-1' species 1660083 322 0 5 phylum 1588 200938 51 class Chrysiogenetes 1588 118001 1 0 5 Chrysiogenales order 49 189769 1537 0 1 4 3 1 0 1488 189770 6 Chrysiogenaceae family 2 0 1 393029 1482 genus Desulfurispirillum 6 936456 1476 species Desulfurispirillum indicum 1 0 1930617 1468 phylum 4 0 3 Calditrichae class 1468 1962850 1 0 4 3 1 0 1465 1962852 4 Calditrichales order 1 0 2 family Calditrichaceae 2 1461 1962854 genus 187144 1459 0 1 187145 1459 species Caldithrix abyssi 1 0 7 0 200930 2866 phylum 7 1 0 2866 68337 2 class Deferribacteres 6 1 0 2864 191393 order Deferribacterales 4 5 1 0 2860 191394 family Deferribacteraceae 36 1 0 819 117999 genus species Denitrovibrio acetiphilus 118000 819 0 1 genus 545865 1196 0 1 1196 477976 Calditerrivibrio nitroreducens species 1 0 0 1 genus 53572 470 Deferribacter desulfuricans species 470 197162 0 1 2351 339 genus 1 0 0 1 species Flexistipes sinusarabici 339 2352 2323 618 no rank 3 0 0 3 clade 618 1783234 phylum 95818 146 0 1 146 1895827 no rank 1 0 0 1 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 species 146 2056494 clade 95901 472 0 2 0 2 class 2497643 472 order 472 2497644 0 2 family 472 2497645 0 2 1551504 472 3 Candidatus Babela genus 2 0 1 673862 469 Candidatus Babela massiliensis species 1 0 12 0 508458 12317 phylum 12317 649775 Synergistia class 22 12 1 0 12295 649776 Synergistales order 21 11 1 0 Synergistaceae family 207 649777 12274 0 1 10 336260 269 Thermovirga genus 1 2 0 1 268 336261 species Thermovirga lienii 1 0 2 0 1 49894 264 genus Acetomicrobium 3 261 97477 species Acetomicrobium mobile 1 0 1 0 2 2 genus Thermanaerovibrio 705 81461 1 0 81462 703 species Thermanaerovibrio acidaminovorans genus 348 81466 0 1 0 1 species Aminobacterium colombiense 81468 348 1 0 2 15 Cloacibacillus genus 10481 508459 1197717 10466 Cloacibacillus porcorum species 1 0 200918 10537 phylum 38 0 38 1 0 10537 188708 class Thermotogae 7 3 order Kosmotogales 845 1643946 1 0 4 842 1643948 family 3 0 2 0 651456 607 genus 265 1330330 Kosmotoga pacifica species 1 0 1 0 651457 342 Kosmotoga olearia species 1 0 235 1184396 genus species Mesotoga prima 1184387 235 0 1 1854 1643947 order 6 0 6 0 1854 1643949 family 28236 513 genus Petrotoga 10 2 0 1 1 0 503 69499 species Petrotoga mobilis 1511648 347 genus 1 0 0 1 species Defluviitoga tunisiensis 1006576 347 genus Marinitoga 1 160798 994 0 1 3 0 1 Marinitoga piezophila species 475 149715 0 1 no rank 2640159 518 0 1 Marinitoga sp. 1137 species 1545835 518 4 order Thermotogales 2419 7831 0 1 27 family Fervidobacteriaceae 21 2455 1643950 1 0 9 1 0 4 Fervidobacterium genus 6 1364 2422 163 2424 species Fervidobacterium nodosum 1 0 575 2423 Fervidobacterium islandicum species 1 0 0 1 species Fervidobacterium pennivorans 93466 620 0 4 genus 1070 2420 no rank 2676525 469 0 2 0 1 species Thermosipho sp. 1063 1462747 232 0 1 species Thermosipho sp. 1070 1437364 237 0 1 species Thermosipho africanus 2421 382 0 1 Thermosipho melanesiensis species 219 46541 17 0 1 188709 5372 family Thermotogaceae 10 1 0 11 genus Thermotoga 30 4513 2335 1508420 238 Thermotoga profunda species 1 0 Thermotoga neapolitana species 2337 580 0 1 species Thermotoga naphthophila 93930 504 0 1 0 4 no rank 1802 2631113 0 1 Thermotoga sp. RQ2 species 387 126740 1 0 1157948 348 species Thermotoga sp. 2812B 1 0 706 126738 species Thermotoga sp. RQ7 361 1157947 species Thermotoga sp. Cell2 1 0 0 1 Thermotoga maritima species 2336 379 1 0 520 93929 species Thermotoga petrophila 1508419 460 Thermotoga caldifontis species 1 0 5 0 1 1643951 849 Pseudothermotoga genus 14 species Pseudothermotoga lettingae 205 177758 0 1 0 1 species Pseudothermotoga hypogea 57487 205 species Pseudothermotoga thermarum 119394 211 0 1 0 1 Pseudothermotoga elfii species 38322 214 8 0 200940 1049 phylum 1 class Thermodesulfobacteria 1049 67799 1 0 8 1048 188710 1 Thermodesulfobacteriales order 7 1 0 1 0 6 6 family Thermodesulfobacteriaceae 1047 188711 444090 169 genus 1 0 Caldimicrobium thiodismutans species 1653476 169 0 1 1740 656 Thermodesulfobacterium genus 8 3 0 1 1 0 1295609 550 Thermodesulfobacterium geofontis species 1741 98 Thermodesulfobacterium commune species 1 0 1 0 216 241192 genus 0 1 Thermodesulfatator indicus species 171695 216 3 0 653 68297 phylum 3 0 653 203486 class order 653 203487 0 3 0 3 family 203488 653 13 653 1 Dictyoglomus genus 3 0 1 0 1 species Dictyoglomus turgidum 513050 233 0 1 Dictyoglomus thermophilum species 14 419 57723 10053 Acidobacteria phylum 2 21 0 1 9205 204432 class Acidobacteriia 137 17 1 0 4 0 1 332160 2047 139 order Solibacterales 0 1 3 Solibacteraceae family 9 332161 1908 genus Candidatus Solibacter 4 1899 332162 1 0 2 species Candidatus Solibacter usitatus 1895 332163 0 1 57 order Acidobacteriales 204433 7021 0 1 12 204434 6964 28 family Acidobacteriaceae 11 0 1 2 1 0 1142 33973 9 Acidobacterium genus 0 1 Acidobacterium capsulatum species 1133 33075 2 0 1 658061 842 Candidatus Koribacter genus 1 0 1 species Candidatus Koribacter versatilis 841 658062 1 0 3 14 Terriglobus genus 2614 392733 0 1 species Terriglobus saanensis 1003 870903 1597 392734 Terriglobus roseus species 1 0 3 0 1 940557 2338 30 Granulicella genus 1349 940614 species Granulicella mallensis 1 0 0 1 species Granulicella tundricola 959 940615 3 0 1 1562566 846 Blastocatellia class 6 458032 840 Chloracidobacterium genus 2 2 0 1 1 0 838 458033 species Chloracidobacterium thermophilum 0 1 clade 2498710 167 1 0 167 67814 phylum 1 0 693071 167 class 0 1 order 693072 167 167 693073 family 1 0 1 0 693074 167 genus 0 1 Caldisericum exile species 167 693075 0 378 clade 1783270 8217543 3656 142182 phylum 8 0 219685 3656 Gemmatimonadetes class 91 8 0 1 1 0 7 86 Gemmatimonadales order 3565 219686 1 0 6 24 family Gemmatimonadaceae 3479 219687 1 0 3 Gemmatimonas genus 13 1932 173479 1 0 829 1379270 Gemmatimonas phototrophica species 1 0 1090 173480 Gemmatimonas aurantiaca species 1 0 2 Gemmatirosa genus 5 1523 1706036 species Gemmatirosa kalamazoonesis 1518 861299 0 1 2581 65842 phylum 5 0 5 1 0 2581 204430 2 class Fibrobacteria 4 1 0 2579 218872 Fibrobacterales order 8 204431 2571 family Fibrobacteraceae 1 3 0 1 0 1 2 2 Fibrobacter genus 832 2570 1 0 833 2568 Fibrobacter succinogenes species clade 68336 8210979 0 363 0 1 333 23 phylum Bacteroidetes 976 8193182 3187 1937959 class Saprospiria 10 8 1 0 Saprospirales order 7 3177 1936988 1 0 7 3 1 0 2140 1937961 family Haliscomenobacteraceae 1 1 0 2 genus Haliscomenobacter 9 2139 2349 0 1 Haliscomenobacter hydrossis species 2130 2350 11 Saprospiraceae family 89374 1030 0 1 3 14 Saprospira genus 1019 1007 1 0 2 Saprospira grandis species 1008 1005 0 1 224899 117743 class Flavobacteriia 77 146 1 0 order Flavobacteriales 111 200644 224822 0 1 145 122 313602 no rank 3 0 37 1940138 1 Candidatus Walczuchella genus 2 1 0 1 0 1415657 36 species Candidatus Walczuchella monophlebidarum 336809 85 genus 1 0 Candidatus Sulcia muelleri species 336810 85 0 1 3 1 0 1592 1853230 family Crocinitomicaceae 1 Fluviicola genus 39 332102 1591 0 1 2 191579 1552 species Fluviicola taffensis 1 0 2 0 1333713 1501 family 1501 267986 6 genus Owenweeksia 2 1 0 1495 253245 Owenweeksia hongkongensis species 1 0 1755828 423 family 1 0 1 0 1755829 423 genus 423 242600 species Ichthyobacterium seriolicida 1 0 3718 family Flavobacteriaceae 49546 119878 0 1 104 0 1 genus 389486 753 0 1 no rank 2648869 753 Sediminicola sp. YIK13 species 753 1453352 0 1 0 1 genus 1518147 1121 1790137 1121 Wenyingzhuangia fucanilytica species 1 0 Zobellia genus 4 112040 2033 0 1 2 0 1 species Zobellia galactanivorans 2029 63186 genus Polaribacter 59 52959 4565 0 1 6 0 3 no rank 196858 2474 0 1 species Polaribacter sp. BM10 1529069 578 species Polaribacter sp. ALD11 2058137 919 0 1 0 1 species Polaribacter sp. MED152 977 313598 Polaribacter reichenbachii species 679 996801 0 1 0 1 Polaribacter vadi species 1353 1774273 genus 393005 1162 0 1 1 0 1162 2069432 Tamlana sp. UJ94 species 1 0 1176327 681 genus 681 2636237 no rank 1 0 0 1 species Aureitalea sp. RR4-38 681 2094025 2 0 1 143222 1104 Salegentibacter genus 2 no rank 2633436 1102 0 1 Salegentibacter sp. T436 species 1729720 1102 0 1 61432 2685 no rank 2 0 1 0 1150389 938 Flavobacteriaceae bacterium UJ101 species Flavobacteriaceae bacterium 3519-10 species 1747 531844 0 1 31705 1016 genus Capnocytophaga 223 15 1 0 Capnocytophaga cynodegmi species 931 28189 0 1 1 0 1019 2875 species Capnocytophaga sputigena 1 0 4767 327575 species Capnocytophaga leadbetteri species Capnocytophaga canimorsus 2269 28188 0 1 3356 1017 Capnocytophaga gingivalis species 1 0 1 0 1848904 1775 Capnocytophaga stomatis species 2640652 11419 no rank 6 0 0 1 Capnocytophaga sp. H2931 species 1945657 946 0 1 Capnocytophaga sp. oral taxon 878 species 1316596 4724 1705617 1829 Capnocytophaga sp. oral taxon 323 species 1 0 species Capnocytophaga sp. oral taxon 864 1316593 1416 0 1 1441 209053 species Capnocytophaga sp. ChDC OS43 1 0 1063 1945658 Capnocytophaga sp. H4358 species 1 0 45243 2031 Capnocytophaga haemolytica species 1 0 1018 2059 species Capnocytophaga ochracea 1 0 291183 2026 4 Lacinutrix genus 4 0 1 Lacinutrix venerupis species 1486034 405 0 1 0 2 no rank 2647285 1617 1 0 877 2057808 Lacinutrix sp. Bg11-31 species 983544 740 Lacinutrix sp. 5H-3-7-4 species 1 0 genus 216431 747 0 1 Croceibacter atlanticus species 313588 747 0 1 3 0 1 225842 1300 24 genus Formosa 2644710 1276 no rank 2 0 530 1336794 Formosa sp. Hel1_33_131 species 1 0 1336795 746 Formosa sp. Hel3_A1_48 species 1 0 5 1 0 5843 292691 1 Gramella genus species Gramella sp. SH35 2126553 1460 0 1 1005 1913577 Gramella sp. LPB0144 species 1 0 1528 411153 Gramella forsetii species 1 0 1486245 1849 Gramella flava species 1 0 genus Zunongwangia 1 417127 1690 0 1 2 398743 1689 species Zunongwangia profunda 1 0 1 0 5 195 genus Myroides 16077 76831 Myroides profundi species 480520 1487 0 1 1 0 76832 11320 species Myroides odoratimimus 2642485 3075 no rank 2 0 1 0 1458492 1136 Myroides sp. ZB35 species 1 0 1583100 1939 Myroides sp. A21 species 1 0 9 genus Flavobacterium 124 12285 237 Flavobacterium gilvum species 1492737 1377 0 1 1255 312277 Flavobacterium indicum species 1 0 1 0 996 2185 species Flavobacterium columnare species Flavobacterium crassostreae 1763534 864 0 1 Flavobacterium johnsoniae species 986 3609 0 1 0 1 species Flavobacterium commune 1199 1306519 Flavobacterium branchiophilum species 55197 974 0 1 species Flavobacterium psychrophilum 96345 698 0 1 0 4 genus 4915 252356 3 0 2615042 3858 no rank 1644130 2244 Maribacter sp. 1_2014MBL_MicDiv species 1 0 803 313603 species Maribacter sp. HTCC2170 1 0 species Maribacter sp. T28 811 1836467 0 1 0 1 species Maribacter cobaltidurans 1178778 1057 457 153265 genus 1 0 Aequorivita sublithincola species 457 101385 0 1 1649495 1100 genus 1 0 2622645 1100 no rank 1 0 1100 1936081 Seonamhaeicola sp. S2-3 species 1 0 0 1 genus 693 83612 1 0 693 57029 species Psychroflexus torquis Siansivirga genus 1 1204360 866 0 1 2 865 762954 Siansivirga zeaxanthinifaciens species 1 0 genus Dokdonia 38 1964 326319 1 0 4 1 0 326320 1271 species Dokdonia donghaensis no rank 655 2615033 0 2 0 1 species Dokdonia sp. MED134 327 313590 Dokdonia sp. 4H-3-7-5 species 983548 328 0 1 1 0 2700084 840 genus 1850246 840 species Lutibacter sp. LPB0138 1 0 1033 286104 genus 2 0 2615021 1033 no rank 2 0 626 754409 species Winogradskyella sp. PG-2 1 0 0 1 Winogradskyella sp. J14-2 species 1936080 407 0 1 2 genus Arenibacter 3 178469 839 0 1 species Arenibacter algicola 836 616991 3 0 1 111500 2534 genus Muricauda 1 0 1 Muricauda ruestringensis species 111501 1620 0 1 species Muricauda lutaonensis 516051 913 5 0 1 104267 3612 genus Tenacibaculum 2 679 1850252 species Tenacibaculum todarodis 1 0 1 0 669041 857 species Tenacibaculum dicentrarchi species Tenacibaculum jejuense 1257 584609 0 1 0 1 species Tenacibaculum maritimum 107401 817 1 0 862 358023 genus species Lutibacter profundi 1622118 862 0 1 2 1 0 867 1209327 3 Flavivirga genus 1 0 1803846 864 Flavivirga eckloniae species 1 0 468 336276 genus 1 0 468 2615019 no rank 2058135 468 species Olleya sp. Bg11-27 1 0 1918 252306 4 genus Robiginitalea 2 1 0 species Robiginitalea biformata 1914 252307 0 1 0 1 2 1 Algibacter genus 261827 1107 0 1 Algibacter alginicilyticus species 1736674 1106 Nonlabens genus 15 3524 363408 1 0 5 0 1 species Nonlabens dokdonensis 328515 884 2 0 2615035 1720 no rank 894 1476901 species Nonlabens sp. MIC269 1 0 species Nonlabens sp. MB-3u-79 826 2058134 0 1 species Nonlabens sediminis 905 319236 0 1 11 Cellulophaga genus 2784 104264 1 0 4 Cellulophaga baltica species 1171 76594 0 1 Cellulophaga algicola species 545 59600 0 1 1057 979 Cellulophaga lytica species 1 0 2762318 100011 family 20 0 0 1 2 Ornithobacterium genus 290 28250 34243 0 1 species Ornithobacterium rhinotracheale 33953 28251 no rank 46831 2782232 0 10 2782228 10303 genus 1 0 0 1 species Chryseobacterium taklimakanense 536441 10303 9 0 1 59732 36528 genus Chryseobacterium 100 3 0 4267 2593645 no rank 0 1 species Chryseobacterium sp. IHB B 17019 889 1721091 1359 2015076 species Chryseobacterium sp. T16E-39 1 0 1 0 2019 878220 Chryseobacterium sp. StRB126 species 1685010 1102 Chryseobacterium glaciei species 1 0 Chryseobacterium gallinarum species 23854 1324352 0 1 1419 558152 species Chryseobacterium piperi 1 0 0 1 Chryseobacterium camelliae species 1265445 2234 253 3552 Chryseobacterium indologenes species 1 0 1 0 6 59 genus Elizabethkingia 10491 308865 Elizabethkingia anophelis species 4017 1117645 0 1 0 1 species Elizabethkingia genomosp. 4 1756150 1152 1 0 1756149 1098 Elizabethkingia genomosp. 3 species Elizabethkingia miricola species 1741 172045 0 1 species Elizabethkingia meningoseptica 238 2424 0 1 1 0 34084 7272 genus 1 0 7272 34085 species Riemerella anatipestifer 1174 1013 genus 1 0 0 1 species Weeksella virosa 1014 1174 1 0 246874 5 Cryomorphaceae family family Blattabacteriaceae 2 1179 39782 1 0 10 9 1 0 1177 34098 Blattabacterium genus 14 855 2647581 no rank 6 0 Blattabacterium sp. (Nauphoeta cinerea) species 89 1316444 0 1 88 1186051 species Blattabacterium sp. (Blaberus giganteus) 1 0 Blattabacterium sp. (Periplaneta americana) species 92 367488 0 1 455 624186 species Blattabacterium sp. (Blattella germanica) 1 0 species Blattabacterium sp. (Blatta orientalis) 42 367806 0 1 0 1 species Blattabacterium sp. (Mastotermes darwiniensis) 39768 89 1 0 1653831 233 species Blattabacterium cuenoti 1 0 164514 75 species Blattabacterium punctulatus 60 1 0 76037 768503 Cytophagia class 238 75799 768507 order Cytophagales 211 59 1 0 3 Flammeovirgaceae family 200667 5344 0 1 4 59739 2789 Flammeovirga genus 1 2 0 1 0 1 no rank 2637820 2788 1191459 2788 Flammeovirga sp. MY04 species 1 0 1 0 340671 2552 no rank 1 0 2552 1257021 species Flammeovirgaceae bacterium 311 1 0 3 1 family Persicobacteraceae 2279 1853234 1 0 2 Persicobacter genus 5 2278 59740 no rank 2273 2664020 0 1 0 1 Persicobacter sp. JZB09 species 2273 1085624 6470 563798 3 family Cyclobacteriaceae 10 1 0 1 0 2 4 genus Algoriphagus 1155 246875 Algoriphagus sp. M8-2 species 1151 1727163 0 1 3 0 1 68288 2487 Cyclobacterium genus 18 320787 1468 Cyclobacterium amurskyense species 1 0 1 0 1001 104 Cyclobacterium marinum species 1732 390846 Echinicola genus 4 2 1 0 Echinicola vietnamensis species 1728 390884 0 1 0 1 2 genus Belliella 3 232244 1093 232259 1090 Belliella baltica species 1 0 42 Cytophagaceae family 20791 89373 1 0 17 107 8626 218 Spirosoma genus 6 0 1 1458 564064 Spirosoma rigui species 1 0 0 1 Spirosoma sp. HA7 species 1806 2057025 Spirosoma montaniterrae species 1178516 1750 0 1 0 1 Spirosoma radiotolerans species 1379870 1453 1 0 1211326 1941 species Spirosoma aerolatum Runella genus 3 2213 105 1 0 2 0 1 species Runella slithyformis 2210 106 0 1 2 Fibrella genus 2 861914 2579 no rank 2620963 2577 0 1 1 0 2577 1834519 Fibrella sp. ES10-3-2-2 species 0 1 2 Dyadobacter genus 2 120831 3116 species Dyadobacter fermentans 94254 3114 0 1 1 0 2 4 Leadbetterella genus 2242 319458 0 1 species Leadbetterella byssophila 316068 2238 1973 978 Cytophaga genus 2 2 1 0 1 0 1971 985 Cytophaga hutchinsonii species 16 1 0 37252 1853232 family Hymenobacteraceae 205 3 1 0 6759 323449 Pontibacter genus 20 388950 2910 Pontibacter akesuensis species 1 0 0 1 species Pontibacter korlensis 3829 400092 288 genus Hymenobacter 89966 22959 0 1 8 species Hymenobacter sedentarius 1411621 4564 0 1 0 5 no rank 2615202 15246 species Hymenobacter sp. PAMC 26628 1484118 3874 0 1 species Hymenobacter sp. PAMC 26554 3718 1484116 0 1 Hymenobacter sp. DG25B species 1385664 2602 0 1 1 0 1356852 3676 species Hymenobacter sp. APR13 0 1 Hymenobacter sp. DG25A species 1385663 1376 0 1 species Hymenobacter swuensis 1446467 2861 4 0 1 1379908 7329 Rufibacter genus 80 0 1 species Rufibacter tibetensis 512763 3304 no rank 3945 2639626 0 2 species Rufibacter sp. DG31D 1379910 1814 0 1 species Rufibacter sp. DG15C 1379909 2131 0 1 1501348 993 2 family Amoebophilaceae 3 0 1 0 1 genus 281119 574 1 0 281120 574 species Candidatus Amoebophilus asiaticus 1 0 273135 417 genus 0 1 no rank 417 2641185 1 0 417 249402 species Cardinium endosymbiont of Encarsia pergandiella 1937968 1038 1 Bernardetiaceae family 3 0 1 2 0 1 1937972 1037 genus Bernardetia 4 Bernardetia litoralis species 1033 999 0 1 1421 2762301 family 2 0 2 1 0 1421 869806 18 genus Marivirga Marivirga tractuosa species 1403 1006 0 1 Bacteroidia class 237 7830791 200643 1 0 71 7821582 171549 3652 order Bacteroidales 60 1 0 5 0 1 171550 504234 40 Rikenellaceae family 2 1 0 500150 239759 genus Alistipes 225 499925 214856 Alistipes finegoldii species 1 0 2 1 0 4044 1611681 genus Mucinivorans 10 4034 1433126 Mucinivorans hirudinis species 1 0 no rank 185291 2983 0 1 Bacteroidales bacterium CF species 1400053 2983 0 1 171552 1111706 139 family Prevotellaceae 11 0 1 genus Prevotella 1780 838 1111567 0 1 10 Prevotella dentalis species 78827 52227 0 1 species Prevotella melaninogenica 28132 151200 0 1 Prevotella enoeca species 76123 50320 0 1 species Prevotella intermedia 316865 28131 0 1 0 1 species Prevotella jejuni 1177574 128285 2638335 27544 no rank 1 0 1 0 27544 652716 species Prevotella sp. oral taxon 299 81294 28129 Prevotella denticola species 1 0 136252 839 species Prevotella ruminicola 1 0 species Prevotella fusca 139200 589436 0 1 3 1 0 166607 1853231 4 family Odoribacteraceae 166603 283168 Odoribacter genus 8 2 1 0 0 1 species Odoribacter splanchnicus 166595 28118 2005519 158315 family Barnesiellaceae 6 3 0 1 2 0 1 397864 158309 genus Barnesiella 150 species Barnesiella viscericola 397865 158159 0 1 0 1 7 3 family Dysgonamonadaceae 2005520 23860 2 0 1 1784836 7092 6 Fermentimonas genus 7086 1562970 Fermentimonas caenicola species 1 0 Proteiniphilum genus 29 294702 8346 0 1 2 0 1 species Proteiniphilum saccharofermentans 1642647 8317 0 1 2 6 Petrimonas genus 307628 8419 1642646 8413 Petrimonas mucosa species 1 0 family 7038 2005523 0 2 23 genus Paludibacter 7038 346096 1 0 2 185300 7015 Paludibacter propionicigenes species 1 0 7 0 1 2005525 753263 341 family Tannerellaceae 55567 195950 genus Tannerella 73 3 1 0 1 0 28112 42392 species Tannerella forsythia 0 1 no rank 2620507 13102 712710 13102 species Tannerella sp. oral taxon HOT-286 1 0 genus Parabacteroides 269 697355 375288 1 0 3 no rank 453352 2649774 0 1 species Parabacteroides sp. CT06 2025876 453352 0 1 species Parabacteroides distasonis 243734 823 0 1 125 family Bacteroidaceae 2743915 815 1 0 11 94311 genus Bacteroides 816 2743790 0 1 10 species Bacteroides caccae 1035147 47678 0 1 1 0 818 718865 Bacteroides thetaiotaomicron species 1 0 107940 246787 Bacteroides cellulosilyticus species Bacteroides helcogenes species 46086 290053 0 1 1 0 36904 28113 species Bacteroides heparinolyticus 59956 28119 Bacteroides zoogleoformans species 1 0 Bacteroides ovatus species 28116 161111 0 1 species Bacteroides caecimuris 1796613 138512 0 1 0 1 species Bacteroides fragilis 344958 817 0 1 4 Porphyromonadaceae family 64 171551 26395 836 26331 24 genus Porphyromonas 3 0 1 0 1 species Porphyromonas gingivalis 20426 837 species Porphyromonas asaccharolytica 28123 5881 0 1 333046 2319614 no rank 5 0 511434 1258 5 genus Candidatus Azobacteroides 2 0 1 0 1 species Candidatus Azobacteroides pseudotrichonymphae 511435 1253 3 0 909656 2318356 genus Bacteroides vulgatus species 766933 821 0 1 Bacteroides salanitronis species 116163 376805 0 1 1435260 357276 species Bacteroides dorei 1 0 1 0 10 order Marinilabiliales 14 8972 1970189 1 0 1573805 2393 family 2060722 2393 genus 1 0 2393 1717717 Marinifilaceae bacterium SPP2 species 1 0 5 Prolixibacteraceae family 1471398 3046 0 1 3 1471399 3041 genus Draconibacterium 11 2 0 1 3030 1168034 species Draconibacterium orientale 1 0 0 1 3 Salinivirgaceae family 3 1970190 1264 2 1 0 1261 1970191 genus Salinivirga 2 1 0 1307839 1259 species Salinivirga cyanobacteriivorans 2 1 0 2255 558415 5 Marinilabiliaceae family 1 0 1193324 2250 genus 1 0 889453 2250 Alkalitalea saponilacus species 1853228 19167 class Chitinophagia 8 17 0 1 1 0 16 84 order Chitinophagales 19159 1853229 0 1 15 122 family Chitinophagaceae 563835 19075 379899 4764 4 Niabella genus 3 0 1 Niabella ginsenosidivorans species 3095 1176587 0 1 species Niabella soli 446683 1665 0 1 2 Filimonas genus 649460 2069 0 1 2 1 0 2067 477680 species Filimonas lacunae 354354 3757 6 genus Niastella 2 0 1 Niastella koreensis species 354356 3751 0 1 2 0 1 398041 1420 Flavisolibacter genus 38 0 1 species Flavisolibacter tropicus 1492898 1382 5548 79328 genus Chitinophaga 10 3 1 0 1 0 2045 2029983 species Chitinophagaceae bacterium 13 0 1 species Chitinophaga pinensis 79329 3493 2 1 0 1395 1769012 7 genus Arachidicoccus 2636138 1388 no rank 1 0 species Arachidicoccus sp. BS20 1850526 1388 0 1 32204 117747 15 Sphingobacteriia class 23 1 0 32189 200666 17 order Sphingobacteriales 22 1 0 47 Sphingobacteriaceae family 84566 32172 0 1 21 genus 929509 2447 0 1 species Solitalea canadensis 2447 995 0 1 4 1 0 5174 423349 84 genus Mucilaginibacter Mucilaginibacter sp. BJC16-A31 species 1234841 1499 0 1 species Mucilaginibacter gotjawali 1978 1550579 0 1 no rank 2617802 1613 0 1 1 0 1300914 1613 Mucilaginibacter sp. PAMC 26640 species 0 1 6 34 genus Sphingobacterium 28453 10516 no rank 8631 2609468 0 4 743722 1737 Sphingobacterium sp. 21 species 1 0 1 0 1933220 2347 Sphingobacterium sp. B29 species species Sphingobacterium sp. ML3W 2120 1538644 0 1 2003121 2427 Sphingobacterium sp. G1-14 species 1 0 1010 1851 Sphingobacterium mizutaii species 1 0 1649482 1845 genus Pseudopedobacter 11 2 0 1 0 1 species Pseudopedobacter saltans 1834 151895 1886 84568 no rank 1 0 1886 1986952 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1 0 1 0 6 30 Pedobacter genus 10257 84567 2482 430522 Pedobacter steynii species 1 0 1 0 984 1977 Pedobacter heparinus species 1 0 188932 2087 Pedobacter cryoconitis species 2399 2628915 no rank 1 0 0 1 species Pedobacter sp. PACM 27299 1727164 2399 1 0 363852 1282 species Pedobacter ginsengisoli 0 1 7 134 Bacteroidetes Order II. Incertae sedis order 1100069 6874 6740 563843 123 Rhodothermaceae family 6 1 0 1196022 2355 no rank 1 0 1779382 2355 Rhodothermaceae bacterium RA species 1 0 0 1 2 10 genus Rhodothermus 29548 2993 1 0 29549 2983 species Rhodothermus marinus Salinibacter genus 4 1269 146918 1 0 2 Salinibacter ruber species 146919 1265 0 1 22 0 1090 16289 phylum 16289 191410 class Chlorobia 122 22 1 0 order Chlorobiales 199 191411 16167 0 1 21 family Chlorobiaceae 251 191412 15968 0 1 20 0 8 no rank 274493 6792 5 0 1 1091 3882 genus Chlorobium 3 0 1 Chlorobium phaeobacteroides species 1096 996 0 1 species Chlorobium limicola 1143 1092 1094 871 species Chlorobium phaeovibrioides 1 0 0 1 species Chlorobium chlorochromatii 337090 869 3 0 1 1099 2910 Pelodictyon genus 5 0 1 Pelodictyon luteolum species 1100 1737 0 1 Pelodictyon phaeoclathratiforme species 34090 1168 2 1 0 528 100715 Chloroherpeton genus 6 0 1 Chloroherpeton thalassium species 522 100716 256319 5227 51 genus Chlorobaculum 4 0 1 0 1 species Chlorobaculum limnaeum 274537 1868 1 0 274539 1898 species Chlorobaculum parvum species Chlorobaculum tepidum 1410 1097 0 1 4 Prosthecochloris genus 1101 3170 0 1 5 Prosthecochloris aestuarii species 1102 601 0 1 no rank 2632826 2565 0 3 1 0 1868325 661 species Prosthecochloris sp. CIB 2401 731 1974213 Prosthecochloris sp. HL-130-GSB species 1 0 0 1 Prosthecochloris sp. GSB1 species 1173 281093 phylum 1134404 1508 0 8 8 1 0 1508 795747 class Ignavibacteria 8 Ignavibacteriales order 28 795748 1500 0 1 7 3 0 1 1334117 733 1 family Melioribacteraceae 17 Melioribacter genus 732 1134403 1 0 2 species Melioribacter roseus 1134405 715 0 1 795749 739 3 family Ignavibacteriaceae 3 0 1 1 Ignavibacterium genus 795750 736 0 1 2 1 0 591197 735 Ignavibacterium album species 327 456828 phylum 2 0 1 0 2 genus Candidatus Cloacimonas 1 327 456826 326 456827 Candidatus Cloacimonas acidaminovorans species 1 0 24 0 4272 200783 phylum 11 class Aquificae 187857 4272 0 1 24 860 1485951 4 order Desulfurobacteriales 5 1 0 4 0 1 558314 856 Desulfurobacteriaceae family 2 1 0 64159 707 genus species Desulfurobacterium thermolithotrophum 64160 707 0 1 Thermovibrio genus 3 147 171868 1 0 2 1 0 228745 144 species Thermovibrio ammonificans order 32069 3401 0 18 5 1 0 1124 224027 Hydrogenothermaceae family 13 666 212790 genus Sulfurihydrogenibium 1 3 1 0 species Sulfurihydrogenibium azorense 292 309806 0 1 0 1 no rank 373 2619248 0 1 Sulfurihydrogenibium sp. YO3AOP1 species 373 436114 445 182899 genus 1 0 0 1 species Persephonella marina 445 309805 2 0 390 90150 no rank 390 412592 1 Thermosulfidibacter genus 2 1 0 1 0 412593 389 Thermosulfidibacter takaii species family 1887 64898 0 11 75905 189 genus 2 0 1 0 136094 74 Thermocrinis albus species 1 0 115 75906 species Thermocrinis ruber 1 Aquifex genus 2713 243 0 1 2 0 1 species Aquifex aeolicus 63363 242 genus 70 939 0 1 1 0 940 70 Hydrogenobacter thermophilus species 0 1 6 7 Hydrogenobaculum genus 168657 1385 no rank 1378 2622382 0 5 380749 294 Hydrogenobaculum sp. Y04AAS1 species 1 0 0 1 species Hydrogenobaculum sp. SN 547146 271 271 547145 species Hydrogenobaculum sp. SHO 1 0 0 1 species Hydrogenobaculum sp. 3684 547143 271 0 1 Hydrogenobaculum sp. HO species 547144 271 6 0 74152 944 phylum class 323 641853 0 2 2 0 641854 323 order 641876 323 family Elusimicrobiaceae 1 2 0 1 423604 322 genus 1 0 0 1 species Elusimicrobium minutum 322 423605 0 1 no rank 99260 153 0 1 species uncultured Termite group 1 bacterium 167965 153 class 468 447830 0 3 1783344 468 1 order Endomicrobiales 3 0 1 2 0 467 1783343 family 2 0 467 1408194 genus 1 0 1408281 305 species Endomicrobium proavitum 1 0 1408204 162 species Candidatus Endomicrobium trichonymphae 0 22 phylum 19754 32066 19754 203490 12 Fusobacteriia class 22 1 0 203491 19742 Fusobacteriales order 13 21 0 1 5024 1129771 132 family Leptotrichiaceae 9 1 0 1107 32068 genus 1 0 1 0 826 1107 Sebaldella termitidis species 3 Leptotrichia genus 2459 32067 1 0 5 3 0 2633022 1816 no rank species Leptotrichia sp. oral taxon 212 712357 599 0 1 1 0 1785996 640 species Leptotrichia sp. oral taxon 847 1 0 577 712368 Leptotrichia sp. oral taxon 498 species 0 1 Leptotrichia buccalis species 640 40542 genus 34104 648 0 1 0 1 Streptobacillus moniliformis species 34105 648 168808 678 genus 1 0 678 187101 species Sneathia amnii 1 0 11 1 0 14705 203492 Fusobacteriaceae family 58 1 0 9 41 Fusobacterium genus 14005 848 998 850 species Fusobacterium mortiferum 1 0 1 0 856 1918 Fusobacterium varium species 1 0 1583098 1649 Fusobacterium hwasookii species 1 0 849 446 Fusobacterium gonidiaformans species 1 0 951 859 Fusobacterium necrophorum species 0 1 species Fusobacterium periodonticum 860 2279 species Fusobacterium ulcerans 992 861 0 1 0 1 Fusobacterium nucleatum species 4731 851 167639 642 genus 1 0 0 1 species Ilyobacter polytropus 642 167642 1783272 19918336 clade 1698 0 0 36 phylum 1297 28929 Deinococci class 162 188787 28929 0 1 36 10365 68933 Thermales order 84 17 1 0 10281 188786 71 family Thermaceae 16 1 0 17 genus Oceanithermus 1130 208447 1 0 2 1 0 1113 187137 species Oceanithermus profundus 2 0 1 186191 540 2 Marinithermus genus 0 1 Marinithermus hydrothermalis species 538 186192 1978 65551 genus Meiothermus 12 3 1 0 1 0 277 1197 Meiothermus ruber species 0 1 species Meiothermus silvanus 52022 769 0 1 8 146 Thermus genus 270 6562 no rank 2619321 647 0 1 0 1 species Thermus sp. CCB_US3_UF1 1111069 647 56957 910 species Thermus oshimai 1 0 1 0 271 1017 species Thermus aquaticus 456163 965 species Thermus parvatiensis 1 0 56956 452 Thermus brockianus species 1 0 0 1 Thermus thermophilus species 274 1415 1 0 37636 1010 species Thermus scotoductus 3 0 2762275 1084 order 3 1 0 1084 332247 6 family Trueperaceae 332248 1078 2 Truepera genus 2 0 1 1 0 332249 1076 Truepera radiovictrix species 129 Deinococcales order 17318 118964 1 0 15 183710 17189 family Deinococcaceae 63 14 0 1 genus Deinococcus 230 17126 1298 1 0 13 1 0 1641 1309411 Deinococcus soli Cha et al. 2016 species species Deinococcus swuensis 1949 1182571 0 1 Deinococcus proteolyticus species 1188 55148 0 1 Deinococcus puniceus species 1182568 1218 0 1 1 0 310783 1394 Deinococcus deserti species 1 0 309887 1101 Deinococcus maricopensis species no rank 2623546 1260 0 1 0 1 Deinococcus sp. NW-56 species 2080419 1260 432329 1131 species Deinococcus peraridilitoris 1 0 1 0 68909 891 Deinococcus geothermalis species 0 1 Deinococcus actinosclerus species 1435 1768108 1 0 1419 1299 Deinococcus radiodurans species Deinococcus gobiensis species 502394 2269 0 1 1 0 716 Firmicutes phylum 129 19022971 1239 0 1 31 class Negativicutes 120 909932 110427 48495 1843489 Veillonellales order 476 11 1 0 1 0 10 family Veillonellaceae 483 48019 31977 2 1 0 5706 909928 27 genus Negativicoccus 1 0 5679 1702287 species Negativicoccus massiliensis 2 0 1 39948 18709 Dialister genus 4 Dialister pneumosintes species 39950 18705 0 1 158 Megasphaera genus 16048 906 1 0 2 15890 907 Megasphaera elsdenii species 1 0 3 1 0 7073 29465 16 Veillonella genus 0 1 species Veillonella parvula 3732 29466 0 1 species Veillonella rodentium 248315 3325 1 0 14 76 Selenomonadales order 31143 909929 0 1 4 4 family Sporomusaceae 1843490 3873 0 1 3 genus Pelosinus 20 365348 3869 365349 2166 Pelosinus fermentans species 1 0 0 1 no rank 2629460 1683 1 0 1683 484770 Pelosinus sp. UFO1 species 27194 1843491 family Selenomonadaceae 153 9 1 0 197 Selenomonas genus 970 23891 0 1 6 1 0 971 6956 Selenomonas ruminantium species 0 3 no rank 2637378 12333 1 0 3349 1884263 species Selenomonas sp. oral taxon 920 1 0 4611 712538 species Selenomonas sp. oral taxon 478 4373 713030 species Selenomonas sp. oral taxon 136 1 0 69823 4405 species Selenomonas sputigena 1 0 5 Megamonas genus 3150 158846 1 0 2 1 0 158847 3145 species Megamonas hypermegale 85 order Acidaminococcales 30669 1843488 1 0 5 0 1 4 95 family Acidaminococcaceae 909930 30584 904 30489 72 Acidaminococcus genus 3 0 1 0 1 species Acidaminococcus fermentans 10561 905 0 1 Acidaminococcus intestini species 187327 19856 420 Clostridia class 18278877 186801 1 0 219 164 0 1 186802 18251749 Clostridiales order 19033 family 2304686 45912 0 12 1 0 2035 2304691 genus 1 0 1510 2035 [Clostridium] stercorarium species 2 0 1 1637257 4120 genus Mageeibacillus 9 0 1 Mageeibacillus indolicus species 884684 4111 2304692 6333 genus 3 0 1 0 2729 1515 Ruminiclostridium thermocellum species [Clostridium] clariflavum species 288965 1937 0 1 Herbivorax saccincola species 1667 1677857 0 1 1 0 26215 2305130 no rank 1 0 26215 1834198 species Ruminiclostridium sp. KB18 0 1 2 3 Fastidiosipila genus 236752 1168 1165 236753 Fastidiosipila sanguinis species 1 0 genus 2833 2304693 0 1 [Clostridium] thermosuccinogenes species 2833 84032 0 1 0 1 2 342 genus Ruminiclostridium 1508657 3208 species [Clostridium] cellulolyticum 1521 2866 0 1 31984 2943 family Heliobacteriaceae 19 3 0 1 2 0 1 2697 2924 34 genus Heliobacterium 1 0 2890 35701 species Heliobacterium modesticaldum 1 0 3 23 Christensenellaceae family 42607 990719 Christensenella genus 2386 990721 42584 0 1 2 species Christensenella massiliensis 40198 1805714 0 1 12 0 1 186804 104365 family Peptostreptococcaceae 816 1 0 936 1411023 no rank 0 1 Peptostreptococcaceae bacterium oral taxon 929 species 936 2081703 1870884 93006 genus Clostridioides 615 2 0 1 0 1 Clostridioides difficile species 92391 1496 2 0 1 44259 875 3 Filifactor genus 872 143361 Filifactor alocis species 1 0 6444 1481960 Peptoclostridium genus 2 2 1 0 1 0 6442 1731 Peptoclostridium acidaminophilum species 2 1 0 1357 186831 genus Acetoanaerobium 4 species Acetoanaerobium sticklandii 1511 1353 0 1 1 0 2 1 Paeniclostridium genus 931 1849828 species Paeniclostridium sordellii 1505 930 0 1 13 0 1 541000 2851914 family Ruminococcaceae 737 1 0 2 genus Ethanoligenens 30 12993 253238 1 0 253239 12963 Ethanoligenens harbinense species 0 1 3 96 genus Ruminococcus 1263 29888 1264 9424 species Ruminococcus albus 1 0 20368 1160721 species Ruminococcus bicirculans 1 0 6 1890281 Herbivorax genus 1 0 no rank 2305133 8639 0 1 1 0 8639 1572656 species Ruminococcaceae bacterium CPB6 0 1 no rank 552397 3608 1 0 3608 29343 [Clostridium] cellulosi species 0 1 2 genus Flavonifractor 80 946234 247454 species Flavonifractor plautii 247374 292800 0 1 2548589 216851 2924 genus Faecalibacterium 2 1 0 0 1 species Faecalibacterium prausnitzii 2545665 853 3 0 1 68298 1357 1 Syntrophomonadaceae family 0 1 genus 857 862 1 0 863 857 Syntrophomonas wolfei species 499 129001 genus 1 0 0 1 species Syntrophothermus lipocalidus 499 86170 18585 186806 Eubacteriaceae family 11 5 1 0 2 0 1 1730 16022 1218 Eubacterium genus 1 0 1736 14804 Eubacterium limosum species 2 1 0 2552 33951 1 Acetobacterium genus species Acetobacterium woodii 33952 2551 0 1 1 0 26 3778 family Lachnospiraceae 14670887 186803 2 1 0 474417 841 genus Roseburia 63 species Roseburia hominis 301301 474354 0 1 genus Lachnoclostridium 299 1506553 170232 0 1 4 no rank 2608895 88370 0 1 1 0 1834196 88370 Lachnoclostridium sp. YL32 species Lachnoclostridium phytofermentans species 66219 4522 0 1 0 1 Lachnoclostridium phocaeense species 1871021 77041 0 1 genus 26516 2719231 1 0 26516 84030 species [Clostridium] saccharolyticum 2569097 130822 genus 1 0 130822 39488 species [Eubacterium] hallii 1 0 0 1 genus 2719313 188047 0 1 [Clostridium] bolteae species 208479 188047 genus 180811 28050 0 1 species [Eubacterium] eligens 39485 180811 0 1 genus 698776 3176 0 1 0 1 species Cellulosilyticum lentocellum 3176 29360 1 0 2 genus Anaerotignum 18 3306 2039240 species Anaerotignum propionicum 3288 28446 0 1 no rank 186928 12979033 0 2 712991 19013 species Lachnospiraceae bacterium oral taxon 500 1 0 1 0 39491 12960020 species [Eubacterium] rectale 3 1 0 15011 830 genus Butyrivibrio 52 1 0 6987 185008 species Butyrivibrio hungatei 0 1 species Butyrivibrio proteoclasticus 43305 7972 1 0 2 Anaerostipes genus 471 390399 207244 0 1 Anaerostipes hadrus species 389928 649756 572511 100613 62 genus Blautia 3 0 1 0 1 no rank 2648079 46842 46842 1796616 Blautia sp. YL58 species 1 0 species Blautia hansenii 1322 53709 0 1 2 0 1 1663717 4726 6 genus Herbinix 4720 1679721 Herbinix luporum species 1 0 29 0 1 186807 37002 family Peptococcaceae 113 1781 2282740 genus 1 0 1 0 1781 102134 Desulfotomaculum gibsoniae species 1 0 5 23 Desulfotomaculum genus 6647 1562 1 0 59610 713 Desulfotomaculum reducens species Desulfotomaculum ruminis species 2351 1564 0 1 0 1 species Desulfotomaculum ferrireducens 2160 1833852 0 1 Desulfotomaculum nigrificans species 1565 1400 Dehalobacter genus 66 56112 8562 0 1 4 55583 2665 Dehalobacter restrictus species 1 0 no rank 5831 2635733 0 2 0 1 Dehalobacter sp. CF species 3142 1131462 species Dehalobacter sp. DCA 1147129 2689 0 1 0 1 5 44 genus Desulfitobacterium 36853 6510 0 1 Desulfitobacterium hafniense species 2506 49338 1327 36854 species Desulfitobacterium dehalogenans 1 0 1 0 1189 142877 Desulfitobacterium metallireducens species species Desulfitobacterium dichloroeliminans 1444 233055 0 1 4 0 1 79206 3871 28 genus Desulfosporosinus 1037 885581 Desulfosporosinus acidiphilus species 1 0 1 0 1650 1563 species Desulfosporosinus orientis species Desulfosporosinus meridiei 79209 1156 0 1 2 0 1 471826 1554 2 genus Candidatus Desulforudis 1552 471827 species Candidatus Desulforudis audaxviator 1 0 Syntrophobotulus genus 2 1322 51196 1 0 2 species Syntrophobotulus glycolicus 1320 51197 0 1 51514 3728 4 genus Dehalobacterium 2 0 1 0 1 species Dehalobacterium formicoaceticum 51515 3724 Thermincola genus 1 1646 278993 1 0 2 0 1 Thermincola potens species 1645 863643 2282742 1268 genus 1 0 Desulfotomaculum acetoxidans species 58138 1268 0 1 10 0 538999 307530 no rank 539000 2193 Clostridiales Family XVII. Incertae Sedis family 9 3 0 1 Thermaerobacter genus 11 2184 73918 1 0 2 0 1 species Thermaerobacter marianensis 2173 73919 2717089 126907 genus 1 0 1 0 2086584 126907 Mordavella sp. Marseille-P3756 species 1392389 173723 genus Intestinimonas 2491 2 0 1 0 1 Intestinimonas butyriciproducens species 1297617 171232 0 1 4 Clostridiales Family XIII. Incertae Sedis family 5 543314 4707 species [Eubacterium] sulci 2155 143393 0 1 0 1 2 11 genus Mogibacterium 86331 2547 species Mogibacterium diversum 2536 114527 0 1 3 1 0 34762 216572 5 family Oscillospiraceae 1 0 2 genus Oscillibacter 120 34757 459786 1 0 34637 351091 Oscillibacter valericigenes species 31979 111903 family Clostridiaceae 2452 41 0 1 0 1 3 Alkaliphilus genus 5 114627 2025 species Alkaliphilus metalliredigens 208226 1297 0 1 species Alkaliphilus oremlandii 461876 723 0 1 Candidatus Arthromitus genus 8 1937 49082 1 0 4 no rank 1929 2638829 0 3 Candidatus Arthromitus sp. SFB-rat-Yit species 1041504 632 0 1 0 1 Candidatus Arthromitus sp. SFB-mouse species 606 49118 species Candidatus Arthromitus sp. SFB-mouse-NL 1508644 691 0 1 30 0 1 1485 101419 genus Clostridium 468 1 0 46867 1252 species Clostridium chauvoei species Clostridium scatologenes 1800 1548 0 1 1501 5162 Clostridium pasteurianum species 1 0 6454 1520 species Clostridium beijerinckii 1 0 Clostridium taeniosporum species 1619 394958 0 1 0 1 Clostridium argentinense species 2334 29341 species Clostridium formicaceticum 1497 1459 0 1 1 0 7927 1491 species Clostridium botulinum 238834 1644 Clostridium estertheticum species 1 0 0 1 species Clostridium ljungdahlii 1175 1538 0 1 species Clostridium tyrobutyricum 1167 1519 0 1 Clostridium cellulovorans species 2573 1493 2660 1502 Clostridium perfringens species 1 0 0 1 Clostridium saccharoperbutylacetonicum species 2806 36745 0 1 Clostridium kluyveri species 2760 1534 1492 2403 Clostridium butyricum species 1 0 1494 780 species Clostridium cochlearium 1 0 84022 1297 Clostridium aceticum species 1 0 0 1 Clostridium carboxidivorans species 2167 217159 1 0 649 1542 Clostridium novyi species 0 1 species Clostridium sporogenes 1016 1509 Clostridium tetani species 1513 1883 0 1 1 0 1283 84023 Clostridium autoethanogenum species 2 0 39517 2614128 no rank 1 0 755731 1902 species Clostridium sp. BNL1100 0 1 Clostridium sp. SY8519 species 37615 1042156 1984 169679 Clostridium saccharobutylicum species 1 0 1576 1216932 species Clostridium bornimense 1 0 1 0 1561 2182 Clostridium baratii species 0 1 species Clostridium acetobutylicum 1488 1422 1 0 2 genus Geosporobacter 17 3961 390805 0 1 Geosporobacter ferrireducens species 1424294 3944 Mordavella genus 1981033 109 0 1 3 1 0 2949 543349 16 family Symbiobacteriaceae 0 1 2 25 genus Symbiobacterium 2733 2933 2908 2734 species Symbiobacterium thermophilum 1 0 1 0 4 Natranaerobiales order 1 839 485256 3 family Natranaerobiaceae 838 485255 1 0 3 Natranaerobius genus 8 835 375928 1 0 2 0 1 Natranaerobius thermophilus species 827 375929 order 2770089 1926 0 3 family 2770092 851 0 1 1 0 499228 851 genus 499229 851 Tepidanaerobacter acetatoxydans species 1 0 2 0 1075 2770093 family 1075 291988 24 Thermosediminibacter genus 2 1 0 291990 1051 species Thermosediminibacter oceani 1 0 1 0 10 order Halanaerobiales 2 3398 53433 1238 53434 family Halobacteroidaceae 12 3 1 0 1 0 596 28186 genus 1 0 596 28187 species Acetohalobium arabaticum 42417 630 genus 1 0 1 0 42422 630 species Halobacteroides halobius 1 family Halanaerobiaceae 972 2158 0 1 6 1 0 2 genus Halothermothrix 7 521 32636 species Halothermothrix orenii 514 31909 0 1 1636 2330 3 genus Halanaerobium 3 1 0 0 1 species Halanaerobium hydrogeniformans 868 656519 0 1 species Halanaerobium praevalens 765 2331 37 0 1 68295 20545 54 order Thermoanaerobacterales 0 1 family 248 227387 1 0 227388 248 genus species Thermodesulfobium narugense 248 184064 0 1 2 0 1 543372 904 5 family Thermoanaerobacterales Family IV. Incertae Sedis 899 252965 genus 1 0 0 1 Mahella australiensis species 899 252966 543371 8191 Thermoanaerobacterales Family III. Incertae Sedis family 43 13 0 1 1 0 9 genus Caldicellulosiruptor 90 5704 44000 0 1 species Caldicellulosiruptor owensensis 620 55205 0 1 species Caldicellulosiruptor kristjanssonii 519 52765 1 0 547 31899 Caldicellulosiruptor bescii species 413889 659 species Caldicellulosiruptor kronotskyensis 1 0 Caldicellulosiruptor obsidiansis species 717609 1328 0 1 1 0 727 413888 Caldicellulosiruptor hydrothermalis species species Caldicellulosiruptor lactoaceticus 52766 520 0 1 44001 694 species Caldicellulosiruptor saccharolyticus 1 0 3 1 0 2444 28895 Thermoanaerobacterium genus 13 Thermoanaerobacterium thermosaccharolyticum species 1455 1517 0 1 Thermoanaerobacterium xylanolyticum species 29329 976 0 1 20 0 1 186814 11148 26 Thermoanaerobacteraceae family 0 4 no rank 2235 42857 1 0 2 5 genus Moorella 1395 44260 1390 1525 Moorella thermoacetica species 1 0 2 1 0 840 42837 4 genus Ammonifex 1 0 836 42838 Ammonifex degensii species 0 1 2 Thermacetogenium genus 4 140458 986 0 1 species Thermacetogenium phaeum 982 85874 Caldanaerobacter genus 24 249529 617 0 1 2 911092 593 species Caldanaerobacter subterraneus 1 0 2 1 0 1184 129957 genus Carboxydothermus 2 1 0 129958 1182 Carboxydothermus hydrogenoformans species 1 0 9 340 genus Thermoanaerobacter 6100 1754 751 583357 Thermoanaerobacter mathranii species 1 0 species Thermoanaerobacter kivui 2325 533 0 1 1 0 496866 610 Thermoanaerobacter pseudethanolicus species 0 1 Thermoanaerobacter wiegelii species 470 46354 0 1 species Thermoanaerobacter brockii 610 29323 no rank 2636821 1869 0 2 0 1 Thermoanaerobacter sp. X514 species 957 399726 1 0 573062 912 species Thermoanaerobacter sp. X513 1 0 917 108150 Thermoanaerobacter italicus species 1 0 84086 986 no rank 0 1 species endosymbiont 'TC1' of Trimyema compressum 986 243899 19 0 1 1737404 22206 class Tissierellia 1 189 order Tissierellales 21181 1737405 1 0 16 1 0 12 family Peptoniphilaceae 7425 19901 1570339 22 genus Anaerococcus 2320 165779 1 0 3 Anaerococcus prevotii species 1511 33034 0 1 0 1 Anaerococcus mediterraneensis species 1870984 787 genus Murdochiella 1 1161127 7509 0 1 2 1852373 7508 Murdochiella vaginalis species 1 0 0 1 2 genus Peptoniphilus 13 162289 716 1 0 703 2637196 no rank 0 1 species Peptoniphilus sp. ING2-D1G 1912856 703 2 0 1 150022 1072 17 genus Finegoldia Finegoldia magna species 1055 1260 0 1 1 0 2 genus Parvimonas 17 859 543311 0 1 species Parvimonas micra 842 33033 1091 2042895 1 Gottschalkiaceae family 3 1 0 2 0 1 1505664 1090 5 genus Gottschalkia 1 0 1085 1556 Gottschalkia acidurici species 2 0 1737407 1024 no rank 1582879 1024 genus Ezakiella 9 2 0 1 0 1 species Ezakiella massiliensis 1852374 1015 1 0 11 2 class Erysipelotrichia 28385 526524 10 0 1 526525 28383 order Erysipelotrichales 10 120 family Erysipelotrichaceae 28373 128827 1 0 9 1647 3543 Erysipelothrix genus 32 3 0 1 1 0 1648 2139 species Erysipelothrix rhusiopathiae species Erysipelothrix larvae 1372 1514105 0 1 544447 8837 no rank 1 0 0 1 Erysipelotrichaceae bacterium I46 species 1834207 8837 1 0 2 6 Faecalibaculum genus 11857 1729679 1 0 1702221 11851 species Faecalibaculum rodentium 2 1 0 4016 191303 19 genus Turicibacter 3997 2638206 no rank 1 0 1712675 3997 Turicibacter sp. H121 species 1 0 1 0 5 Limnochordia class 43 2142 1676648 1 0 4 55 order Limnochordales 2099 1676649 3 1 0 2044 1676650 27 family Limnochordaceae 1676651 2017 73 Limnochorda genus 2 0 1 1555112 1944 Limnochorda pilosa species 1 0 Bacilli class 315 578599 91061 1 0 427 310875 186826 4767 order Lactobacillales 164 1 0 11 0 1 186828 6901 6 family Carnobacteriaceae 3 0 1 1470540 2227 Jeotgalibaca genus 21 Jeotgalibaca dankookensis species 708126 1399 0 1 2621505 807 no rank 1 0 0 1 species Jeotgalibaca sp. PTS2502 1903686 807 genus Marinilactibacillus 8 191769 700 0 1 2 692 2632303 no rank 1 0 Marinilactibacillus sp. 15R species 1911586 692 0 1 3968 2747 52 genus Carnobacterium 5 1 0 147709 462 Carnobacterium inhibens species 1 0 0 1 Carnobacterium maltaromaticum species 2751 724 0 2 no rank 2730 257487 1 0 208596 611 species Carnobacterium sp. 17-4 0 1 Carnobacterium sp. CP1 species 1564681 2119 58 0 1 33958 55725 278 Lactobacillaceae family 264 2767890 genus 1 0 1 0 1193095 264 Lactobacillus hokkaidonensis species 0 4 genus 11049 2767887 0 1 Lactobacillus acidipiscis species 541 89059 0 1 Lactobacillus ruminis species 1623 6572 0 1 Lactobacillus salivarius species 2959 1624 1 0 977 1601 species Lactobacillus agilis 0 1 genus 299 2767877 299 148814 species Lactobacillus kunkeei 1 0 6 0 1 1253 3092 8 Pediococcus genus 0 1 Pediococcus damnosus species 381 51663 0 1 species Pediococcus inopinatus 114090 521 Pediococcus claussenii species 187452 245 0 1 1 0 908 1255 species Pediococcus pentosaceus species group 1029 1670797 0 1 0 1 species Pediococcus acidilactici 1254 1029 2767879 3383 genus 6 0 Lactobacillus alimentarius species 1602 842 0 1 1 0 691 1612 Lactobacillus farciminis species 1 0 1847728 395 species Lactobacillus allii 1 0 1007676 608 species Lactobacillus ginsenosidimutans 0 1 Lactobacillus heilongjiangensis species 1074467 417 species Lactobacillus crustorum 392416 430 0 1 genus 2742598 2480 0 3 97478 965 Lactobacillus mucosae species 1 0 665 1613 species Lactobacillus fermentum 1 0 1 0 850 1598 Lactobacillus reuteri species 0 3 genus 1506 2767886 0 1 species Lactobacillus koreensis 269 637971 1 0 752 1580 species Lactobacillus brevis 485 267363 species Lactobacillus zymae 1 0 0 2 genus 1383 2767889 0 1 species Lactobacillus backii 375175 567 Lactobacillus coryniformis species 816 1610 0 1 Lactobacillus genus 4542 20350 1578 1 0 16 species Lactobacillus gallinarum 988 52242 0 1 Lactobacillus jensenii species 261 109790 0 1 1604 2065 species Lactobacillus amylovorus 1 0 Lactobacillus acetotolerans species 265 1600 0 1 species Lactobacillus johnsonii 2287 33959 0 1 1584 3064 Lactobacillus delbrueckii species 1 0 Lactobacillus acidophilus species 1138 1579 0 1 Lactobacillus kefiranofaciens species 267818 714 0 1 1 0 1587 2174 species Lactobacillus helveticus 1596 746 Lactobacillus gasseri species 1 0 0 4 no rank 2620435 1603 species Lactobacillus sp. wkB8 582 1545702 0 1 1 0 2099788 395 species Lactobacillus sp. CBA3605 0 1 species Lactobacillus sp. CBA3606 316 2099789 1 0 310 2108362 Lactobacillus sp. D1501 species 503 83683 Lactobacillus amylolyticus species 1 0 0 1 genus 955 2767892 1 0 240427 955 species Lactobacillus paracollinoides 2 0 2767885 1106 genus 612 1599 Lactobacillus sakei species 1 0 28038 494 species Lactobacillus curvatus 1 0 genus 3429 2759736 0 3 0 1 species Lactobacillus rhamnosus 1076 47715 0 1 species Lactobacillus casei 1582 1294 1059 1597 Lactobacillus paracasei species 1 0 374 2767881 genus 2 0 1625 208 species Lactobacillus sanfranciscensis 1 0 0 1 species Lactobacillus lindneri 53444 166 0 3 genus 2107 2767842 1 0 181 60520 Lactobacillus paraplantarum species Lactobacillus plantarum species 1590 1214 0 1 712 1589 Lactobacillus pentosus species 1 0 0 1 genus 2767876 1563 Lactobacillus amylophilus species 1563 1603 0 1 genus 2767893 2107 0 3 1 0 556 1581 Lactobacillus buchneri species 152331 745 species Lactobacillus parabuchneri 1 0 species Lactobacillus curieae 806 1138822 0 1 19 0 1 81852 74557 family Enterococcaceae 34 0 1 genus 1012 33969 0 1 Melissococcus plutonius species 33970 1012 12 0 1 1350 70732 5171 Enterococcus genus 0 1 species Enterococcus faecium 53302 1352 Enterococcus durans species 53345 837 0 1 2608891 2121 no rank 3 0 Enterococcus sp. CR-Ec1 species 616 2057791 0 1 0 1 Enterococcus sp. FDAARGOS_375 species 894 2060307 Enterococcus sp. FDAARGOS_163 species 611 2060306 0 1 5346 1351 Enterococcus faecalis species 1 0 0 1 species Enterococcus wangshanyuanii 951 2005703 762 53346 species Enterococcus mundtii 1 0 484 417368 species Enterococcus thailandicus 1 0 0 1 species Enterococcus casseliflavus 37734 649 0 1 Enterococcus hirae species 1354 1109 genus Vagococcus 3 692 2737 1 0 3 314 633807 Vagococcus penaei species 1 0 375 519472 Vagococcus teuberi species 1 0 Tetragenococcus genus 19 51668 2087 0 1 2 51669 2068 species Tetragenococcus halophilus 1 0 49 1 0 158338 1300 family Streptococcaceae 1278 1357 5937 genus Lactococcus 91 5 0 1 species Lactococcus raffinolactis 1366 931 0 1 0 1 Lactococcus garvieae species 1363 1098 0 1 Lactococcus lactis species 3467 1358 1364 350 Lactococcus piscium species 1 0 1 0 43 Streptococcus genus 9137 151123 1301 435 1888195 species Streptococcus himalayensis 1 0 0 1 Streptococcus uberis species 368 1349 0 1 species Streptococcus parauberis 932 1348 2050 1313 species Streptococcus pneumoniae 1 0 2018 1302 species Streptococcus gordonii 1 0 2608887 8153 no rank 7 0 0 1 Streptococcus sp. NPS 308 species 1902136 836 1 0 714 1759399 species Streptococcus sp. A12 1319 382 Streptococcus sp. 'group B' species 1 0 0 1 Streptococcus sp. I-P16 species 1156433 1494 1361 1156431 species Streptococcus sp. I-G2 1 0 species Streptococcus sp. FDAARGOS_192 2624 1839799 0 1 712633 742 species Streptococcus sp. oral taxon 431 1 0 0 1 Streptococcus agalactiae species 17304 1311 28037 4275 Streptococcus mitis species 1 0 745 59310 species Streptococcus macedonicus 1 0 0 1 Streptococcus halotolerans species 746 1814128 species Streptococcus thermophilus 1308 2321 0 1 1318 2672 species Streptococcus parasanguinis 1 0 1304 6934 species Streptococcus salivarius 1 0 species Streptococcus gallolyticus 315405 3037 0 1 0 1 species Streptococcus merionis 318 400065 species group 671232 38278 0 3 1 0 1338 8090 Streptococcus intermedius species Streptococcus constellatus species 76860 12013 0 1 0 1 species Streptococcus anginosus 18175 1328 Streptococcus infantarius species 102684 6968 0 1 1 0 927 1811193 Streptococcus pantholopis species species Streptococcus oralis 1876 1303 0 1 1 0 1982 1346 species Streptococcus iniae 0 1 Streptococcus marmotae species 1825069 577 Streptococcus sanguinis species 806 1305 0 1 0 1 Streptococcus suis species 14319 1307 1 0 1326 2818 species Streptococcus acidominimus 0 2 species group 2788 119603 1 0 1334 1043 species Streptococcus dysgalactiae Streptococcus equi species 1745 1336 0 1 1 0 197614 1189 species Streptococcus pasteurianus 0 1 species Streptococcus pluranimalium 1277 82348 1042 1309 species Streptococcus mutans 1 0 0 1 species Streptococcus cristatus 45634 599 Streptococcus equinus species 1335 1229 0 1 7755 150055 species Streptococcus lutetiensis 1 0 Streptococcus pseudopneumoniae species 407 257758 0 1 species Streptococcus pyogenes 4841 1314 0 1 Leuconostocaceae family 5 5578 81850 1 0 17 610 46254 genus 1 0 610 1247 Oenococcus oeni species 1 0 14 Leuconostoc genus 1243 3488 0 1 9 740 1245 species Leuconostoc mesenteroides 1 0 2685106 460 no rank 1 0 460 979982 species Leuconostoc sp. C2 1 0 1 0 394 1244 Leuconostoc gelidum species 0 1 species Leuconostoc carnosum 528 1252 0 1 Leuconostoc lactis species 181 1246 172 33964 species Leuconostoc citreum 1 0 0 1 Leuconostoc garlicum species 405 255248 Leuconostoc kimchii species 136609 594 0 1 1 0 6 21 genus Weissella 1475 46255 0 1 species Weissella ceti 759620 344 Weissella jogaejeotgali species 260 1631871 0 1 1 0 137591 326 species Weissella cibaria Weissella paramesenteroides species 276 1249 0 1 1 0 165096 248 Weissella koreensis species 4688 186827 family Aerococcaceae 8 8 1 0 7 0 1 1375 4680 122 genus Aerococcus 1 0 888 128944 Aerococcus urinaehominis species 1 0 119206 845 species Aerococcus sanguinicola 1 0 930 87541 species Aerococcus christensenii species Aerococcus urinaeequi 1044 51665 0 1 0 1 species Aerococcus urinae 494 1376 357 1377 Aerococcus viridans species 1 0 0 1 no rank 263855 321 Lactobacillales bacterium species 1993866 321 0 1 267409 1385 Bacillales order 633 262 1 0 539002 4732 no rank 9 0 7 0 539742 3911 no rank 3911 33986 108 genus Exiguobacterium 7 1 0 0 1 Exiguobacterium sibiricum species 332410 662 species Exiguobacterium antarcticum 132920 703 0 1 2644629 2438 no rank 4 0 species Exiguobacterium sp. U13-1 736 1849031 0 1 Exiguobacterium sp. ZWU0009 species 758 1224749 0 1 1 0 360911 488 Exiguobacterium sp. AT1b species 0 1 Exiguobacterium sp. MH3 species 1399115 456 539738 821 no rank 2 0 0 1 2 genus Gemella 3 1378 821 818 2624949 no rank 1 0 species Gemella sp. oral taxon 928 1785995 818 0 1 6854 186820 family Listeriaceae 56 8 1 0 6 1 0 6346 1637 40 Listeria genus Listeria monocytogenes species 1639 2559 0 1 0 1 Listeria innocua species 755 1642 species Listeria seeligeri 767 1640 0 1 1 0 1638 1139 species Listeria ivanovii species Listeria welshimeri 1643 1086 0 1 genus 2755 452 0 1 species Brochothrix thermosphacta 2756 452 0 1 0 1 40 4772 family Staphylococcaceae 90964 30677 262 2005363 genus 1 0 0 1 species Auricoccus indicus 1849491 262 genus Staphylococcus 1146 1279 22832 0 1 33 557 70258 Staphylococcus piscifermentans species 1 0 1 0 643214 420 Staphylococcus stepanovicii species 91994 485 no rank 1 0 species Staphylococcus sp. AntiMn-1 485 1715860 0 1 0 1 species Staphylococcus agnetis 985762 334 373 155085 Staphylococcus lutrae species 1 0 380 46127 species Staphylococcus felis 1 0 species Staphylococcus lugdunensis 28035 570 0 1 0 1 Staphylococcus nepalensis species 448 214473 1 0 29384 269 species Staphylococcus kloosii 1 0 1080 45972 species Staphylococcus pasteuri 1 0 479 170573 Staphylococcus pettenkoferi species 1 0 1170 29385 Staphylococcus saprophyticus species 4264 1280 Staphylococcus aureus species 1 0 316 1281 species Staphylococcus carnosus 1 0 0 1 Staphylococcus argenteus species 985002 625 661 29382 Staphylococcus cohnii species 1 0 0 1 Staphylococcus hyicus species 1284 262 Staphylococcus pseudintermedius species 283734 1353 0 1 29388 320 Staphylococcus capitis species 1 0 Staphylococcus warneri species 475 1292 0 1 Staphylococcus hominis species 1290 396 0 1 1 0 1288 742 species Staphylococcus xylosus 641 1295 Staphylococcus schleiferi species 1 0 1282 965 species Staphylococcus epidermidis 1 0 1 0 196 1294 Staphylococcus muscae species 0 1 species Staphylococcus condimenti 70255 632 339 61015 Staphylococcus succinus species 1 0 1 0 246432 719 species Staphylococcus equorum 848 1283 Staphylococcus haemolyticus species 1 0 species Staphylococcus simiae 432 308354 0 1 Staphylococcus sciuri species 1296 450 0 1 1 0 1286 485 Staphylococcus simulans species genus Macrococcus 3 1883 69965 1 0 4 69966 1114 species Macrococcus caseolyticus 1 0 2619255 415 no rank 1 0 0 1 species Macrococcus sp. IME1552 1898474 415 351 1855823 Macrococcus canis species 1 0 1 0 45669 928 genus 407035 928 Salinicoccus halodurans species 1 0 186817 113663 family Bacillaceae 483 117 0 1 29331 825 2 genus Amphibacillus 2 0 1 1 0 1449 823 Amphibacillus xylanus species 0 5 genus 2675234 4662 0 1 species Bacillus halodurans 455 86665 0 1 species Bacillus pseudofirmus 79885 1302 1 0 1579 79880 species Bacillus clausii 199441 699 Bacillus krulwichiae species 1 0 300825 627 Bacillus lehensis species 1 0 2 1 0 545 459532 Terribacillus genus 1 1 0 586416 544 species Terribacillus aidingensis 0 1 2 Salimicrobium genus 1 351195 966 1230341 965 Salimicrobium jeotgali species 1 0 1609 182709 genus 1 0 1609 182710 Oceanobacillus iheyensis species 1 0 50 genus Virgibacillus 4345 84406 1 0 7 0 1 Virgibacillus necropolis species 163877 530 species Virgibacillus halodenitrificans 1482 982 0 1 1479 2620237 no rank 2 0 403957 695 Virgibacillus sp. SK37 species 1 0 1 0 784 1911587 species Virgibacillus sp. 6R 1 0 862 2017483 species Virgibacillus phasianinus 0 1 species Virgibacillus pantothenticus 1473 442 129337 10432 597 genus Geobacillus 15 0 1 0 4 species group 1505648 4080 1 0 523 33938 Geobacillus thermocatenulatus species species Geobacillus kaustophilus 513 1462 0 1 2197 33941 species Geobacillus thermoleovorans 1 0 Geobacillus lituanicus species 169283 847 0 1 33940 890 Geobacillus thermodenitrificans species 1 0 6 0 2642459 2585 no rank Geobacillus sp. WCH70 species 471223 457 0 1 544556 288 species Geobacillus sp. Y412MC61 1 0 744 581103 species Geobacillus sp. Y4.1MC1 1 0 0 1 Geobacillus sp. C56-T3 species 456 691437 0 1 species Geobacillus sp. Y412MC52 550542 195 1233873 445 Geobacillus sp. GHH01 species 1 0 1 0 1921421 834 Geobacillus genomosp. 3 species 0 1 Geobacillus stearothermophilus species 1422 774 672 129338 Geobacillus subterraneus species 1 0 2 0 2547 2675229 genus species Bacillus simplex 1731 1478 0 1 0 1 species Bacillus muralis 264697 816 1386 71089 5429 Bacillus genus 58 0 1 1 0 1408 3011 species Bacillus pumilus 0 1 Bacillus smithii species 586 1479 79883 589 species Bacillus horikoshii 1 0 species group 16057 653685 0 9 Bacillus sonorensis species 119858 1012 0 1 0 1 Bacillus subtilis species 1423 5952 species subgroup 4703 1938374 0 3 1 0 492670 1415 species Bacillus velezensis species Bacillus amyloliquefaciens 2505 1390 0 1 1 0 783 659243 species Bacillus siamensis species Bacillus vallismortis 72361 76 0 1 Bacillus paralicheniformis species 1648923 1403 0 1 1452 1258 species Bacillus atrophaeus 1 0 1 0 1402 1653 species Bacillus licheniformis 0 1 species Bacillus cellulosilyticus 430 1413 species Bacillus megaterium 2900 1404 0 1 1664069 1534 species Bacillus glycinifermentans 1 0 0 1 Bacillus flexus species 477 86664 0 1 species Bacillus safensis 1054 561879 1 0 624 1792192 species group 1 0 624 293387 species Bacillus altitudinis 1398 2807 species Bacillus coagulans 1 0 754 135735 Bacillus endophyticus species 1 0 species Bacillus gibsonii 190 79881 0 1 Bacillus weihaiensis species 985 1547283 0 1 species Bacillus beveridgei 632773 810 0 1 0 1 species Bacillus methanolicus 1471 556 10088 185979 no rank 19 0 0 1 species Bacillus sp. SJ-10 363 563169 Bacillus sp. BH072 species 96 1570330 0 1 0 1 species Bacillus sp. Lzh-5 2049935 103 737 666686 Bacillus sp. 1NLA3E species 1 0 0 1 Bacillus sp. X1(2014) species 1565991 556 0 1 species Bacillus sp. 1s-1 1040 2026248 98228 1136 species Bacillus sp. OxB-1 1 0 Bacillus sp. YP1 species 265 1574141 0 1 0 1 Bacillus sp. 275 species 1941347 379 species Bacillus sp. Pc3 394 1446792 0 1 1 0 690 1837130 species Bacillus sp. FJAT-14266 0 1 Bacillus sp. JS species 1127744 612 465 2009331 species Bacillus sp. MD-5 1 0 0 1 Bacillus sp. IHB B 7164 species 665 1827146 1 0 1856406 1040 species Bacillus sp. H15-1 790 1774743 species Bacillus sp. SDLI1 1 0 0 1 species Bacillus sp. WP8 408 756828 1409 130 species Bacillus sp. (in: Bacteria) 1 0 1628753 219 species Bacillus sp. LM 4-2 1 0 0 1 species Bacillus aryabhattai 412384 1477 1 0 1500 324767 Bacillus infantis species 514 33932 Bacillus cohnii species 1 0 10 0 17876 86661 species group Bacillus bombysepticus species 248 658666 0 1 0 1 Bacillus toyonensis species 155322 671 1 0 2709 1405 Bacillus mycoides species 1 0 4885 1428 species Bacillus thuringiensis 1 0 414 1392 Bacillus anthracis species 1396 5551 species Bacillus cereus 1 0 0 1 Bacillus cytotoxicus species 580165 691 0 3 no rank 2707 2750818 species Bacillus sp. ABP14 755 1892404 0 1 1839798 957 species Bacillus sp. FDAARGOS_235 1 0 Bacillus sp. HBCD-sjtu species 995 2053832 0 1 0 1 species Bacillus xiamenensis 841 1178537 genus 1408 45667 0 2 402384 663 Halobacillus mangrovi species 1 0 Halobacillus halophilus species 1570 745 0 1 genus 1906945 817 0 1 1 0 1426 817 species Parageobacillus thermoglucosidasius 1 0 1082 1055323 genus 33936 1082 Aeribacillus pallidus species 1 0 1329200 2694 8 genus Fictibacillus 3 0 1 1 0 411 1221500 species Fictibacillus phosphorivorans 1 0 255247 2275 species Fictibacillus arsenicus genus Lysinibacillus 58 3720 400634 1 0 5 718 2636778 no rank 1 0 1 0 718 2072025 Lysinibacillus sp. YS11 species 1421 1434 Lysinibacillus sphaericus species 1 0 814 28031 species Lysinibacillus fusiformis 1 0 0 1 Lysinibacillus varians species 1145276 696 genus Lentibacillus 3 475 175304 1 0 2 0 1 Lentibacillus amyloliquefaciens species 472 1472767 0 1 6 Anoxybacillus genus 7 150247 3859 species Anoxybacillus flavithermus 736 33934 0 1 1 0 682 198467 Anoxybacillus gonensis species species Anoxybacillus amylolyticus 424 294699 0 1 no rank 2010 2639704 0 2 0 1 Anoxybacillus sp. B7M1 species 1490057 852 Anoxybacillus sp. B2M1 species 1158 1490052 0 1 genus 2675230 2105 0 2 0 1 Bacillus kochii species 859143 925 1180 665099 Bacillus oceanisediminis species 1 0 186823 7580 78 Alicyclobacillaceae family 9 0 1 3 1 0 1463 1129704 35 Kyrpidia genus 0 1 Kyrpidia sp. EA-1 species 551 2055160 1 0 877 33943 species Kyrpidia tusciae 29330 2199 Alicyclobacillus genus 10 2 0 1 Alicyclobacillus acidocaldarius species 405212 2189 0 1 432330 3840 genus Tumebacillus 31 3 0 1 1 0 1214604 1448 Tumebacillus algifaecis species 0 1 Tumebacillus avium species 1903704 2361 0 1 2 Sporolactobacillaceae family 2 186821 1291 1289 663587 no rank 1 0 1 0 85683 1289 species [Bacillus] selenitireducens 83800 186822 163 family Paenibacillaceae 46 1 0 3970 55080 13 genus Brevibacillus 4 1 0 0 1 species Brevibacillus formosus 54913 909 0 1 Brevibacillus laterosporus species 1465 1513 0 1 species Brevibacillus brevis 1393 1535 0 3 no rank 2360 85151 55079 2360 Aneurinibacillus genus 10 3 0 1 species Aneurinibacillus soli 857 1500254 0 1 1493 2642329 no rank 1 0 0 1 species Aneurinibacillus sp. XH2 1493 1450761 0 1 36 genus Paenibacillus 845 44249 74517 1481 1462996 Paenibacillus yonginensis species 1 0 365617 2076 Paenibacillus sabinae species 1 0 1 0 189426 1593 species Paenibacillus odorifer 0 1 Paenibacillus crassostreae species 1763538 1236 1 0 3799 61624 Paenibacillus mucilaginosus species 26280 185978 no rank 13 0 1536774 2583 Paenibacillus sp. FSL H7-0357 species 1 0 1 0 2226 481743 Paenibacillus sp. Y412MC10 species Paenibacillus sp. 32O-W species 1280 1695218 0 1 839 1566358 Paenibacillus sp. IHBB 10380 species 1 0 Paenibacillus sp. FSL P4-0081 species 2728 1536769 0 1 1 0 2531 1536773 Paenibacillus sp. FSL R7-0331 species 1 0 1353 1536770 species Paenibacillus sp. FSL R5-0345 1 0 3339 1536771 species Paenibacillus sp. FSL R5-0912 324057 2408 species Paenibacillus sp. JDR-2 1 0 species Paenibacillus sp. FSL H7-0737 1536775 955 0 1 species Paenibacillus sp. BIHB4019 1663 1870819 0 1 0 1 species Paenibacillus sp. FSL R7-0273 3197 1536772 Paenibacillus sp. lzh-N1 species 1178 2069255 0 1 1 0 528191 1338 species Paenibacillus xylanexedens species Paenibacillus terrae 1597 159743 0 1 1 0 169760 2780 species Paenibacillus stellifer Paenibacillus donghaensis species 414771 2823 0 1 Paenibacillus swuensis species 1178515 1281 0 1 59893 965 species Paenibacillus peoriae 1 0 0 1 Paenibacillus bovis species 1593 1616788 0 1 species group 2044880 3591 1 0 3591 483937 Paenibacillus riograndensis species 1631 1126833 Paenibacillus beijingensis species 1 0 1 0 189425 3156 species Paenibacillus graminis species Paenibacillus polymyxa 1406 3882 0 1 0 1 species Paenibacillus durus 44251 3855 Paenibacillus larvae species 1088 1464 0 1 0 1 Paenibacillus borealis species 160799 3113 species Paenibacillus kribbensis 172713 1078 0 1 1 0 162209 1544 species Paenibacillus naphthalenovorans 0 1 species Paenibacillus ihbetae 1892 1870820 2 1 0 2790 76632 21 Thermobacillus genus 377615 2769 Thermobacillus composti species 1 0 26 0 1 186818 17463 30 family Planococcaceae 2 0 1 157226 959 Jeotgalibacillus genus 3 Jeotgalibacillus malaysiensis species 1508404 956 0 1 2 1 0 581 1649 Kurthia genus 2 no rank 2644826 579 0 1 1 0 579 1750719 species Kurthia sp. 11kri321 3 1 0 2547 648800 3 genus Solibacillus species Solibacillus silvestris 76853 1736 0 1 1 0 2637870 808 no rank 0 1 species Solibacillus sp. R5-41 2048654 808 1569 4879 genus Sporosarcina 8 5 0 1 2647733 2130 no rank 2 0 Sporosarcina sp. P33 species 1930764 1071 0 1 Sporosarcina sp. P37 species 1059 1930546 0 1 2264 1571 Sporosarcina ureae species 1 0 0 1 Sporosarcina psychrophila species 1476 477 1 0 451 648802 genus Rummeliibacillus stabekisii species 451 241244 0 1 0 1 12 genus Planococcus 49 1372 8016 species Planococcus rifietoensis 200991 848 0 1 Planococcus plakortidis species 1038856 605 0 1 714 161360 species Planococcus antarcticus 1 0 species Planococcus faecalis 1598147 624 0 1 no rank 2662419 1662 0 2 1000 2058136 Planococcus sp. MB-3u-03 species 1 0 0 1 species Planococcus sp. PAMC 21323 662 1526927 508 1215089 species Planococcus halocryophilus 1 0 0 1 species Planococcus donghaensis 338 414778 590 1374 Planococcus kocurii species 1 0 254 1302659 species Planococcus sp. L10.15 1 0 0 1 species Planococcus maritimus 1824 192421 1 0 4 11 family Thermoactinomycetaceae 716 186824 Laceyella genus 292635 24 0 1 2 0 1 1677050 681 genus Novibacillus 40 0 1 species Novibacillus thermophilus 641 1471761 0 2 no rank 1220 33974 1 0 2 genus Ndongobacter 24 1220 1930845 1 0 1871025 1196 species Ndongobacter massiliensis 5 0 747 67819 phylum 1663419 747 1 Fimbriimonadia class 5 0 1 1 order Fimbriimonadales 746 1663425 1 0 4 0 1 3 2 family Fimbriimonadaceae 1663426 745 0 1 2 Fimbriimonas genus 2 1005038 743 0 1 Fimbriimonas ginsengisoli species 741 1005039 141 0 1798711 56797 clade 56797 1117 20 phylum Cyanobacteria 141 1 0 0 1 no rank 259 1983111 0 1 cyanobacterium endosymbiont of Epithemia turgida species 718217 259 1890424 27106 order Synechococcales 306 56 0 1 family 1890429 371 0 2 14 genus Acaryochloris 371 155977 1 0 2 1 0 155978 357 species Acaryochloris marina 1904 1213 1 family Prochloraceae 5 1 0 4 0 1 1218 1903 genus Prochlorococcus 4 264 2627481 no rank 2 0 species Prochlorococcus sp. MIT 0801 1501269 128 0 1 1 0 1501268 136 Prochlorococcus sp. MIT 0604 species 1219 1635 Prochlorococcus marinus species 1 0 97 Synechococcaceae family 19367 1890426 1 0 32 184 Synechococcus genus 1129 13737 0 1 26 species Synechococcus lividus 33070 484 0 1 no rank 12565 2626047 0 23 species Synechococcus sp. PCC 7502 1173263 459 0 1 1 0 195248 250 species Synechococcus sp. PCC 8807 1 0 758 84588 Synechococcus sp. WH 8102 species Synechococcus sp. JA-2-3B'a(2-13) species 858 321332 0 1 1 0 794 1916956 species Synechococcus sp. SynAce01 0 1 Synechococcus sp. PCC 73109 species 374982 292 1 0 680 585423 species Synechococcus sp. KORDI-49 0 1 Synechococcus sp. WH 7803 species 682 32051 318 64471 Synechococcus sp. CC9311 species 1 0 Synechococcus sp. JA-3-3Ab species 321327 1945 0 1 Synechococcus sp. WH 8103 species 561 29410 0 1 469 585425 species Synechococcus sp. KORDI-52 1 0 0 1 species Synechococcus sp. WH 8109 512 166314 0 1 Synechococcus sp. KORDI-100 species 437 1280380 374981 193 species Synechococcus sp. PCC 7003 1 0 110662 402 Synechococcus sp. CC9605 species 1 0 species Synechococcus sp. CC9902 551 316279 0 1 1 0 1827144 344 species Synechococcus sp. NIES-970 Synechococcus sp. PCC 7002 species 276 32049 0 1 0 1 species Synechococcus sp. RCC307 757 316278 Synechococcus sp. UTEX 2973 species 1350461 418 0 1 0 1 species Synechococcus sp. PCC 7117 195498 273 336 195253 species Synechococcus sp. PCC 6312 1 0 1 0 504 32046 Synechococcus elongatus species genus 227 13034 0 1 Dactylococcopsis salina species 227 292566 0 1 1 0 358 146785 genus Thermosynechococcus elongatus species 358 146786 0 1 3 1 0 4948 167375 Cyanobium genus 89 Cyanobium gracile species 2014 59930 0 1 0 1 no rank 2627006 2845 0 1 species Cyanobium sp. NIES-981 2845 1851505 20 family Merismopediaceae 1151 1890428 1 0 5 1142 1131 31 Synechocystis genus 4 0 1 3 0 1100 2640012 no rank 0 1 species Synechocystis sp. IPPAS B-1465 2116702 428 species Synechocystis sp. PCC 6714 244 1147 0 1 0 1 species Synechocystis sp. PCC 6803 1148 428 2 0 915 2303730 family 2 1 0 915 170610 genus Halomicronema 3 1 0 912 1209493 species Halomicronema hongdechloris 2881 1890438 family Leptolyngbyaceae 11 6 1 0 2870 47251 8 Leptolyngbya genus 5 1 0 Leptolyngbya boryana species 785 1184 0 1 no rank 2077 2650499 0 3 0 1 Leptolyngbya sp. PCC 7376 species 111781 534 0 1 Leptolyngbya sp. O-77 species 1010 1080068 0 1 Leptolyngbya sp. NIES-3755 species 1752064 533 0 1 3 Pseudanabaenaceae family 2 1890436 211 2 0 1 1152 209 Pseudanabaena genus 1 0 1 no rank 2593292 208 0 1 Pseudanabaena sp. PCC 7367 species 208 82654 1676 307596 7 Gloeobacteria class 6 1 0 0 1 5 37 Gloeobacterales order 307595 1669 24 family Gloeobacteraceae 1890422 1632 0 1 4 Gloeobacter genus 16 33071 1608 0 1 3 0 1 species Gloeobacter violaceus 887 33072 0 1 Gloeobacter kilaueensis species 705 1416614 0 38 subclass 11821 1301283 1150 4560 33 order Oscillatoriales 17 0 1 1892251 1106 family Coleofasciculaceae 6 3 0 1 genus Geitlerinema 2 63132 1100 0 1 2 no rank 1098 2648775 0 1 0 1 Geitlerinema sp. PCC 7407 species 1173025 1098 1 0 3 6 family Cyanothecaceae 440 1892249 2 0 1 43988 434 33 genus Cyanothece 1 0 401 2649277 no rank 0 1 species Cyanothece sp. PCC 7425 401 395961 1892255 381 family Gomontiellaceae 2 2 0 1 0 1 genus 379 241421 379 241425 species Crinalium epipsammum 1 0 6 0 1 1892254 1529 Oscillatoriaceae family 2 1158 867 9 Oscillatoria genus 3 0 1 0 1 species Oscillatoria acuminata 330 118323 0 1 species Oscillatoria nigro-viridis 482564 528 2 1 0 660 1155738 Moorea genus 20 0 1 Moorea producens species 1155739 640 family 1892252 1071 0 2 1 0 44471 655 genus no rank 2642155 655 0 1 655 1173027 Microcoleus sp. PCC 7113 species 1 0 1205 416 genus 1 0 0 1 species Trichodesmium erythraeum 1206 416 21 1 0 7261 1118 8 Chroococcales order Chroococcaceae family 6 2040 1890464 1 0 7 1 0 345 102231 genus 1 0 2623012 345 no rank 0 1 Gloeocapsa sp. PCC 7428 species 1173026 345 1 0 2 3 Chondrocystis genus 314 268175 no rank 2648896 311 0 1 2005460 311 species Chondrocystis sp. NIES-4102 1 0 0 1 3 2 Geminocystis genus 669357 1375 1373 2625037 no rank 2 0 0 1 Geminocystis sp. NIES-3708 species 719 1615909 1 0 654 1617448 species Geminocystis sp. NIES-3709 1890450 4120 family 7 0 0 1 genus 263510 483 1 0 2546360 483 species 1 0 483 43989 strain Cyanothece sp. ATCC 51142 2546365 1646 genus 2 0 0 2 species 1646 2546366 629 395962 Cyanothece sp. PCC 8802 strain 1 0 strain Cyanothece sp. PCC 8801 41431 1017 0 1 1 0 355 92682 no rank 355 76023 genus 1 0 355 2632878 no rank 1 0 species Halothece sp. PCC 7418 355 65093 0 1 genus 1453359 112 0 1 1 0 713887 112 Candidatus Atelocyanobacterium thalassa species 28070 1524 genus 2 0 0 1 species 572 2546359 strain Cyanothece sp. PCC 7822 572 497965 0 1 species 952 2546356 0 1 952 65393 strain Cyanothece sp. PCC 7424 1 0 4 0 1 1890449 598 25 family Microcystaceae 3 0 1 1125 573 9 genus Microcystis 1 0 2643300 187 no rank 1967666 187 Microcystis sp. MC19 species 1 0 0 1 Microcystis aeruginosa species 377 1126 2 family Cyanobacteriaceae 495 1890452 1 0 2 102234 493 genus 1 0 Cyanobacterium aponinum species 493 379064 0 1 0 1 order 343 1890505 0 1 family 343 1890528 0 1 genus 343 54298 54299 343 Chroococcidiopsis thermalis species 1 0 2118 52604 Pleurocapsales order 7 5 1 0 1 0 1890500 825 family 0 1 genus 44474 825 825 54308 species Pleurocapsa minor 1 0 1286 1890498 family Dermocarpellaceae 3 3 1 0 genus 102115 1283 0 2 no rank 2642663 514 0 1 0 1 Stanieria sp. NIES-3757 species 1807358 514 769 102116 species Stanieria cyanosphaera 1 0 1161 13454 33 order Nostocales 33 0 1 family 1892263 747 0 2 1190 747 Fischerella genus 1 2 0 1 494603 746 no rank 1 0 1752063 746 species Fischerella sp. NIES-3754 1 0 1001 1185 9 Rivulariaceae family 3 1 0 2 1 0 992 373984 genus Rivularia 1 991 2676603 no rank 1 0 0 1 Rivularia sp. PCC 7116 species 991 373994 1 0 1219117 493 no rank 0 1 Nostocales cyanobacterium HT-58-2 species 493 1940762 family Nostocaceae 31 7505 1162 1 0 18 genus Anabaena 3 1445 1163 1 0 4 0 1 Anabaena cylindrica species 462 1165 980 2619674 no rank 2 0 Anabaena sp. 90 species 554 46234 0 1 1 0 426 1647413 species Anabaena sp. WA102 3 1 0 1083 264688 7 Trichormus genus species Trichormus variabilis 532 264691 0 1 1 0 1164 544 species Trichormus azollae Nostoc genus 28 4946 1177 1 0 10 7 0 2593658 3452 no rank 1 0 1261031 775 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' Nostoc sp. PCC 7107 species 489 317936 0 1 0 1 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1618022 544 1 0 1751286 405 Nostoc sp. NIES-3756 species 0 1 Nostoc sp. PCC 7120 species 103690 536 0 1 Nostoc sp. PCC 7524 species 286 28072 species Nostoc sp. CENA543 417 1869241 0 1 1069 1306274 Nostoc flagelliforme species 1 0 272131 397 species Nostoc punctiforme 1 0 0 8 family 2661849 3675 Calothrix genus 30 1186 3675 0 1 8 1 0 325 32054 Calothrix parietina species 0 6 no rank 3320 2619626 0 1 Calothrix sp. PCC 7507 species 99598 602 0 1 Calothrix sp. NIES-4101 species 2005461 670 0 1 Calothrix sp. NIES-3974 species 2005462 442 0 1 species Calothrix sp. 336/3 356 1337936 Calothrix sp. NIES-2098 species 1954171 518 0 1 species Calothrix sp. NIES-4071 732 2005469 0 1 2 0 445 1859062 no rank genus Thermobaculum 2 445 262406 1 0 2 0 1 Thermobaculum terrenum species 443 166501 19609 544448 1 phylum Tenericutes 100 1 0 1 0 96 Mollicutes class 38 17629 31969 8074 186328 order Entomoplasmatales 8 39 1 0 5638 2131 35 Spiroplasmataceae family 24 1 0 1 0 23 Spiroplasma genus 136 5603 2132 species Spiroplasma diminutum 216936 221 0 1 0 1 species Spiroplasma clarkii 367 2139 1 0 216944 263 species Spiroplasma sabaudiense 1 0 2133 193 species Spiroplasma citri Spiroplasma syrphidicola species 188 216945 0 1 0 1 Spiroplasma litorale species 396 216942 species Spiroplasma chrysopicola 216933 247 0 1 47834 142 species Spiroplasma kunkelii 1 0 401 315358 Spiroplasma eriocheiris species 1 0 Spiroplasma helicoides species 216938 242 0 1 0 1 Spiroplasma floricola species 216937 312 1 0 134 2136 species Spiroplasma monobiae 0 1 species Spiroplasma corruscae 216934 126 Spiroplasma culicicola species 202 216935 0 1 1 0 121 216946 Spiroplasma turonicum species 1 0 362837 226 Spiroplasma cantharicola species 0 1 Spiroplasma atrichopogonis species 306 1114980 species Spiroplasma taiwanense 187 2145 0 1 no rank 2637901 692 0 2 346 1898044 Spiroplasma sp. TU-14 species 1 0 Spiroplasma sp. NBRC 100390 species 1914410 346 0 1 1 0 2137 195 Spiroplasma apis species 2144 306 Spiroplasma mirum species 1 0 0 1 14 4 family Entomoplasmataceae 33925 2428 8 1 0 1760 46239 35 genus Mesoplasma 0 1 Mesoplasma entomophilum species 2149 318 216427 223 species Mesoplasma chauliocola 1 0 Mesoplasma tabanidae species 219745 115 0 1 240 2151 species Mesoplasma florum 1 0 0 1 species Mesoplasma syrphidae 333 225999 138853 381 species Mesoplasma lactucae 1 0 0 1 Mesoplasma coleopterae species 115 324078 664 46238 Entomoplasma genus 16 5 1 0 0 1 species Entomoplasma luminosum 150 214888 0 1 species Entomoplasma melaleucae 81459 199 182 74700 Entomoplasma freundtii species 1 0 117 215578 Entomoplasma somnilux species 1 0 13 1 0 2496 186329 Acholeplasmatales order 1 12 0 1 2146 2495 3 family Acholeplasmataceae 2147 1855 38 genus Acholeplasma 5 0 1 1 0 375 61635 species Acholeplasma brassicae 1 0 2148 654 species Acholeplasma laidlawii 1 0 38986 359 species Acholeplasma palmae 35623 429 Acholeplasma oculi species 1 0 6 1 0 637 33926 20 Candidatus Phytoplasma genus species group 138 85632 0 1 0 1 species Candidatus Phytoplasma australiense 138 59748 1 0 85630 92 species group species Candidatus Phytoplasma mali 92 37692 0 1 387 85620 species group 3 0 1 0 100379 127 Onion yellows phytoplasma species Aster yellows witches'-broom phytoplasma species 229545 120 0 1 140 202462 species Maize bushy stunt phytoplasma 1 0 1 0 43 13 order Mycoplasmatales 7021 2085 2092 7008 22 Mycoplasmataceae family 42 0 1 genus Mycoplasma 61 4539 2093 1 0 27 Mycoplasma arthritidis species 2111 181 0 1 Mycoplasma hyorhinis species 2100 83 0 1 Mycoplasma suis species 57372 69 0 1 150 171632 species Mycoplasma ovis 1 0 species Mycoplasma haemofelis 29501 63 0 1 species Mycoplasma hominis 461 2098 0 1 1 0 65123 93 species Mycoplasma wenyonii 0 1 Mycoplasma bovoculi species 66 45362 Mycoplasma dispar species 86660 106 0 1 200 2128 Mycoplasma flocculare species 1 0 1 0 290 2118 Mycoplasma mobile species 1 0 39 2104 Mycoplasma pneumoniae species 28227 127 species Mycoplasma penetrans 1 0 species Mycoplasma haemocanis 136241 29 0 1 50052 426 Mycoplasma crocodyli species 1 0 1 0 135 2099 Mycoplasma hyopneumoniae species 29554 62 species Mycoplasma canadense 1 0 0 1 Mycoplasma gallisepticum species 219 2096 0 1 no rank 182 2683645 1749074 182 Mycoplasma sp. (ex Biomphalaria glabrata) species 1 0 1 0 24 2097 Mycoplasma genitalium species 0 1 Mycoplasma putrefaciens species 2123 104 Mycoplasma yeatsii species 51365 193 0 1 1087 656088 species group 3 0 species Mycoplasma capricolum 306 2095 0 1 572 2102 Mycoplasma mycoides species 1 0 2105 209 Mycoplasma leachii species 1 0 984991 89 species Mycoplasma parvum 1 0 0 2 genus 295 2129 0 1 species Ureaplasma parvum 144 134821 species Ureaplasma urealyticum 2130 151 0 1 0 12 genus 2767358 2152 0 1 species Mycoplasma agalactiae 265 2110 1 0 296 171284 Mycoplasma cynos species 0 1 Mycoplasma californicum species 90 2113 1 0 48003 122 Mycoplasma pullorum species species Mycoplasma bovigenitalium 2112 117 0 1 1 0 29553 87 species Mycoplasma bovirhinis 2115 137 species Mycoplasma fermentans 1 0 Mycoplasma arginini species 2094 150 0 1 0 1 Mycoplasma synoviae species 167 2109 species Mycoplasma pulmonis 180 2107 0 1 1 0 342 29555 Mycoplasma canis species 28903 199 species Mycoplasma bovis 1 0 713063 1269 no rank 2 0 1911683 460 species Tenericutes bacterium MZ-XQ 1 0 1 0 809 1911684 Tenericutes bacterium MO-XQ species 710 2799557 no rank 1 0 0 1 genus 710 1912503 710 2624196 no rank 1 0 species Candidatus Izimaplasma sp. HR1 1541959 710 0 1 772731 201174 phylum Actinobacteria 125 653 1 0 4 0 595 1752188 no rank 228 1848754 species Actinobacteria bacterium IMCC19121 1 0 0 1 species Actinobacteria bacterium IMCC26077 1848755 131 0 1 species Actinobacteria bacterium IMCC25003 157 1848255 0 1 species Actinobacteria bacterium IMCC26103 79 1848756 1 0 6 class Rubrobacteria 20 1526 84995 order Rubrobacterales 44 84996 1506 0 1 5 4 0 1 84997 1462 37 family Rubrobacteraceae genus Rubrobacter 104 42255 1425 0 1 3 0 1 species Rubrobacter xylanophilus 49319 932 1 0 42256 389 Rubrobacter radiotolerans species 84992 1158 2 class Acidimicrobiia 7 0 1 32 Acidimicrobiales order 1156 84993 1 0 6 0 1 3 5 Acidimicrobiaceae family 84994 226 2 0 1 53634 221 genus Acidimicrobium 1 53635 220 Acidimicrobium ferrooxidans species 1 0 0 2 family 898 2448023 2 0 1 682522 898 6 genus Ilumatobacter 467094 892 Ilumatobacter coccineus species 1 0 1 class Thermoleophilia 1653 1497346 1 0 5 0 1 4 43 Solirubrobacterales order 588673 1652 32 family Conexibacteraceae 1609 320583 1 0 3 191494 1577 genus Conexibacter 30 2 0 1 1547 191495 species Conexibacter woesei 1 0 33 1 0 234917 84998 class Coriobacteriia 1181 18 1 0 80291 1643822 order Eggerthellales 1620 17 0 1 1643826 78671 Eggerthellaceae family 14170 3 1 0 32206 84111 Eggerthella genus 497 0 1 no rank 2648737 4072 0 1 species Eggerthella sp. YY7918 4072 502558 27637 84112 species Eggerthella lenta 1 0 0 1 2 66 Slackia genus 84108 4946 4880 84110 species Slackia heliotrinireducens 1 0 Phoenicibacter genus 1 1981050 846 0 1 2 845 1944646 species Phoenicibacter massiliensis 1 0 0 1 2 genus Adlercreutzia 19 447020 5736 species Adlercreutzia equolifaciens 446660 5717 0 1 1 0 2 Denitrobacterium genus 8 2644 79603 0 1 Denitrobacterium detoxificans species 2636 79604 0 1 3 genus Gordonibacter 54 644652 17551 6089 1841863 Gordonibacter massiliensis species 1 0 11408 1335613 Gordonibacter urolithinfaciens species 1 0 572 84162 1 genus Cryptobacterium 2 1 0 1 0 84163 571 species Cryptobacterium curtum 14 1 0 153445 84999 185 order Coriobacteriales 0 1 6 family Coriobacteriaceae 1256 84107 139354 1 0 84113 3644 no rank 0 1 species Coriobacteriaceae bacterium 68-1-3 3644 1531429 2 0 1 33870 1995 Coriobacterium genus 6 Coriobacterium glomerans species 33871 1989 0 1 2 0 1 102106 132459 Collinsella genus 63 0 1 species Collinsella aerofaciens 132396 74426 7 1 0 13906 1643824 292 Atopobiaceae family genus Olsenella 121 12518 133925 1 0 4 1 0 133926 3805 species Olsenella uli no rank 2023 2638792 0 1 1 0 712411 2023 Olsenella sp. oral taxon 807 species 1805478 6569 Olsenella sp. Marseille-P2300 species 1 0 2767353 1091 genus 1 0 1091 1382 Atopobium parvulum species 1 0 0 1 genus Atopobium 1380 5 class Actinobacteria 5914 1760 532757 0 1 597 0 1 143 Micrococcales order 1036 85006 86395 2903 85021 family Intrasporangiaceae 35 9 1 0 2 1 0 588 53457 8 Janibacter genus species Janibacter indicus 857417 580 0 1 2 1 0 870 267408 Arsenicicoccus genus 5 no rank 865 2663846 0 1 Arsenicicoccus sp. oral taxon 190 species 1658671 865 0 1 727 265976 Serinicoccus genus 81 2 1 0 1 0 646 1758689 Serinicoccus sp. JLT9 species Intrasporangium genus 12 683 53357 1 0 2 1 0 53358 671 Intrasporangium calvum species 1 0 3 Brevibacteriaceae family 19 1496 85019 1696 1477 27 Brevibacterium genus 2 0 1 1703 1450 species Brevibacterium linens 1 0 0 1 46 296 Microbacteriaceae family 85023 25032 genus Leifsonia 14 110932 1628 0 1 2 Leifsonia xyli species 1575 1614 0 1 1 0 389 1705353 genus 0 1 species Aurantimicrobium minutum 389 708131 4 0 1 2034 2327 22 genus Curtobacterium Curtobacterium pusillum species 891 69373 0 1 2 0 257496 1414 no rank 1 0 659 1905847 species Curtobacterium sp. BH-2-1-1 Curtobacterium sp. MR_MD2014 species 755 1561023 0 1 459 genus Clavibacter 2883 1573 1 0 6 2424 28447 446 species Clavibacter michiganensis 5 1 0 1 0 624 33014 Clavibacter insidiosus subspecies 0 1 Clavibacter capsici subspecies 348 1874630 subspecies Clavibacter nebraskensis 31963 458 0 1 1 0 31964 548 Clavibacter sepedonicus subspecies 1 0 108 1434032 genus 1 0 108 1159327 species Pontimonas salivibrio 3 0 1655488 332 no rank 1655489 332 clade 3 0 genus Rhodoluna 2 529883 332 0 1 3 species Rhodoluna lacicola 228 529884 0 1 0 1 species Candidatus Rhodoluna planktonica 535712 102 0 1 2 6 genus Agromyces 33877 1037 453304 1031 species Agromyces aureus 1 0 33882 9525 genus Microbacterium 330 14 0 1 Microbacterium aurum species 36805 850 0 1 0 1 species Microbacterium chocolatum 724 84292 1 0 300019 890 species Microbacterium paludicola species Microbacterium hominis 162426 818 0 1 8 0 5457 2609290 no rank 1 0 1795053 936 species Microbacterium sp. PAMC 28756 1 0 1714373 872 Microbacterium sp. No. 7 species Microbacterium sp. str. 'China' species 899 2103230 0 1 species Microbacterium sp. CGR1 398 1696072 0 1 367477 484 species Microbacterium sp. XT11 1 0 1 0 692 1938334 species Microbacterium sp. TPU 3598 0 1 Microbacterium sp. 1.5R species 496 1916917 0 1 species Microbacterium sp. BH-3-3-3 680 1906742 2033 456 species Microbacterium testaceum 1 0 933 1759331 genus 1 0 Cnuibacter physcomitrellae species 933 1619308 0 1 Cryobacterium genus 12 3065 69578 1 0 3 670052 1829 Cryobacterium arcticum species 1 0 no rank 2649013 1224 0 1 1 0 1978566 1224 species Cryobacterium sp. LW097 3 1 0 732 33886 8 genus Rathayibacter 521 33888 Rathayibacter tritici species 1 0 1 0 203 145458 Rathayibacter toxicus species 0 1 genus 697 447237 0 1 no rank 2626248 697 0 1 Frondihabitans sp. PAMC 28766 species 1795630 697 2 1 0 341 337004 4 genus Microcella 1 0 279828 337 species Microcella alkaliphila 2 0 1 518733 739 4 Microterricola genus 735 412690 Microterricola viridarii species 1 0 no rank 577468 33 0 1 1 0 2038 33 genus 33 2039 Tropheryma whipplei species 1 0 3 0 1 85022 381 1 Jonesiaceae family 43673 380 32 genus Jonesia 2 0 1 species Jonesia denitrificans 348 43674 0 1 0 1 3 family Sanguibacteraceae 7 145360 733 1 0 2 genus Sanguibacter 10 726 60919 1 0 716 60920 Sanguibacter keddieii species 2 1 0 346 85018 1 Dermatophilaceae family 1 0 1862 345 genus 0 1 Dermatophilus congolensis species 1863 345 10 1 0 7396 85020 family Dermabacteraceae 47 0 1 2 1 genus Dermabacter 36739 798 1 0 797 1630135 species Dermabacter vaginalis 0 1 genus 481 472568 1 0 481 472569 Devriesea agamarum species Brachybacterium genus 93 43668 6070 0 1 6 0 1 no rank 1325 2623841 Brachybacterium sp. P6-10-X1 species 1903186 1325 0 1 1 0 2017484 1266 Brachybacterium sp. VM2412 species 0 1 Brachybacterium faecium species 43669 1581 862 1331682 Brachybacterium ginsengisoli species 1 0 1 0 943 2017485 species Brachybacterium sp. VR2415 9 0 1 85017 4161 family Promicromonosporaceae 200 186188 1251 4 Xylanimonas genus 2 0 1 0 1 species Xylanimonas cellulosilytica 186189 1247 3 1 0 1408 157920 genus Cellulosimicrobium 11 no rank 2624466 817 0 1 817 1980001 species Cellulosimicrobium sp. TH-20 1 0 Cellulosimicrobium cellulans species 1710 580 0 1 0 1 3 genus Isoptericola 30 254250 1302 0 1 species Isoptericola variabilis 139208 555 717 372663 species Isoptericola dokdonensis 1 0 12 Dermacoccaceae family 2044 145357 1 0 7 803 57499 10 Kytococcus genus 2 1 0 1 0 793 1276 Kytococcus sedentarius species 8 Dermacoccus genus 57495 591 0 1 2 1 0 1274 583 species Dermacoccus nishinomiyaensis 2 Luteipulveratus genus 745364 638 0 1 2 species Luteipulveratus mongoliensis 636 571913 0 1 6 0 1 85016 3555 family Cellulomonadaceae 21 1707 3534 51 genus Cellulomonas 5 0 1 0 1 Cellulomonas flavigena species 1711 1092 Cellulomonas fimi species 1708 1048 0 1 0 1 species Cellulomonas gilvus 732 11 2620175 611 no rank 1 0 1 0 611 2003551 species Cellulomonas sp. PSBB021 family Micrococcaceae 2226 36534 1268 1 0 40 3 1 0 5551 32207 1 genus Rothia Rothia mucilaginosa species 5153 43675 0 1 0 1 Rothia dentocariosa species 2047 397 2 1 0 562 1742992 4 Paenarthrobacter genus 1 0 558 43663 Paenarthrobacter aurescens species genus Sinomonas 3 596707 846 0 1 2 0 1 species Sinomonas atrocyanea 843 37927 2078575 754 genus 1 0 Arthrobacter sp. IHBB 11108 species 754 1618207 0 1 Pseudarthrobacter genus 46 3452 1742993 1 0 4 1 0 1267 121292 species Pseudarthrobacter sulfonivorans 0 1 Pseudarthrobacter phenanthrenivorans species 1078 361575 0 1 species Pseudarthrobacter chlorophenolicus 1061 85085 Glutamicibacter genus 2 1695 1742989 1 0 2 0 1 species Glutamicibacter arilaitensis 1693 256701 477 1645 Renibacterium genus 14 2 1 0 species Renibacterium salmoninarum 463 1646 0 1 7 genus Micrococcus 2057 1269 1 0 2 0 1 species Micrococcus luteus 2050 1270 2 1 0 456 1868332 21 Neomicrococcus genus 1 0 556325 435 species Neomicrococcus aestuarii genus Arthrobacter 535 15610 1663 1 0 15 0 1 Arthrobacter crystallopoietes species 1485 37928 11179 235627 no rank 12 0 species Arthrobacter sp. QXT-31 1357915 735 0 1 1849032 818 species Arthrobacter sp. U41 1 0 1504 1652545 Arthrobacter sp. YC-RL1 species 1 0 1 0 1690248 1351 Arthrobacter sp. LS16 species 0 1 Arthrobacter sp. Rue61a species 1118963 707 1 0 1806905 691 species Arthrobacter sp. ZXY-2 818 290399 Arthrobacter sp. FB24 species 1 0 Arthrobacter sp. ATCC 21022 species 701 1771959 0 1 1 0 1494608 1000 species Arthrobacter sp. PAMC 25486 0 1 species Arthrobacter sp. YN 864 2020486 species Arthrobacter sp. ERGS1:01 936 1704044 0 1 1 0 1054 2079227 species Arthrobacter sp. PGP41 2411 656366 Arthrobacter alpinus species 1 0 2848 57493 29 Kocuria genus 4 1 0 0 1 Kocuria flava species 446860 1176 916 72000 Kocuria rhizophila species 1 0 Kocuria palustris species 727 71999 0 1 1 0 3 family Beutenbergiaceae 3 745 125316 0 1 2 7 genus Beutenbergia 84756 742 84757 735 Beutenbergia cavernae species 1 0 163 0 1 85007 127011 991 order Corynebacteriales 3 1 0 564 316606 2 Segniliparaceae family 1 0 2 Segniliparus genus 16 562 286801 0 1 species Segniliparus rotundus 546 286802 1 0 4 family Dietziaceae 14 1499 85029 1 0 3 11 Dietzia genus 1485 37914 0 1 no rank 2617939 851 1 0 712270 851 species Dietzia sp. oral taxon 368 1 0 623 499555 species Dietzia timorensis 1 0 31 family Nocardiaceae 205 30212 85025 0 1 7 261 genus Nocardia 1817 10478 455432 1089 species Nocardia terpenica 1 0 1 0 1504 37329 Nocardia farcinica species Nocardia nova species 37330 970 0 1 1 0 37326 2166 species Nocardia brasiliensis 1 0 2600 135487 Nocardia cyriacigeorgica species 0 1 Nocardia seriolae species 1888 37332 0 1 23 genus Rhodococcus 600 1827 19529 43767 615 Rhodococcus hoagii species 1 0 species Rhodococcus aetherivorans 191292 1239 0 1 0 1 species Rhodococcus erythropolis 880 1833 0 1 species Rhodococcus rhodochrous 747 1829 1 0 1343 132919 species Rhodococcus jostii 37919 2256 Rhodococcus opacus species 1 0 0 1 Rhodococcus fascians species 1828 888 Rhodococcus qingshengii species 596 334542 0 1 no rank 192944 8651 0 12 1045808 463 Rhodococcus sp. YL-1 species 1 0 1 0 702 935199 Rhodococcus sp. p52 species 1258 1033922 Rhodococcus sp. WB1 species 1 0 1570939 539 species Rhodococcus sp. 2G 1 0 1653479 700 species Rhodococcus sp. PBTS 2 1 0 1 0 1727214 713 species Rhodococcus sp. H-CA8f 1 0 476 1807790 species Rhodococcus sp. BH4 1 0 1723645 617 Rhodococcus sp. 008 species 0 1 species Rhodococcus sp. WMMA185 679318 575 1 0 1653478 625 species Rhodococcus sp. PBTS 1 species Rhodococcus sp. MTM3W5.2 1805827 645 0 1 1 0 1564114 1338 species Rhodococcus sp. B7740 1 0 103816 807 species Rhodococcus pyridinivorans 0 1 species Rhodococcus ruber 907 1830 1762 43639 119 family Mycobacteriaceae 57 0 1 genus 13010 1866885 0 13 0 1 species Mycobacterium gilvum 680 1804 1 0 961 134601 species Mycobacterium goodii species Mycobacterium litorale 1113 758802 0 1 Mycobacterium chubuense species 878 1800 0 1 1795 1247 species Mycobacterium neoaurum 1 0 Mycobacterium fortuitum species 768 1766 0 1 1514 1810 Mycobacterium vaccae species 1 0 Mycobacterium thermoresistibile species 1101 1797 0 1 0 1 Mycobacterium phlei species 935 1771 1 0 36814 607 Mycobacterium rhodesiae species 0 1 species Mycobacterium smegmatis 1772 1122 species Mycobacterium aurum 1791 936 0 1 1 0 1148 110539 species Mycobacterium vanbaalenii 697025 475 1 Hoyosella genus 2 0 1 0 1 Hoyosella subflava species 639313 474 0 2 genus 1898 1073531 1 0 875328 1017 species Mycobacterium sinense 881 1788 Mycobacterium terrae species 1 0 670516 3389 genus 5 0 Mycobacterium immunogenum species 83262 491 0 1 Mycobacterium saopaulense species 1578165 514 0 1 1 0 442 1520670 Mycobacterium stephanolepidis species 1 0 1774 372 species Mycobacterium chelonae species Mycobacterium abscessus 1570 36809 0 1 0 1 34 2059 genus Mycobacterium 1763 24748 1 0 794 2249310 species group 1 0 794 722731 species Mycobacterium shigaense 0 1 species Mycobacterium ulcerans 519 1809 2642494 10172 no rank 13 0 1273687 759 Mycobacterium sp. VKM Ac-1817D species 1 0 2051552 625 species Mycobacterium sp. PYR15 1 0 1 0 629 1920667 species Mycobacterium sp. WY10 Mycobacterium sp. NRRL B-3805 species 1247 1570328 0 1 819 1545728 species Mycobacterium sp. EPa45 1 0 Mycobacterium sp. djl-10 species 1007 1879023 0 1 1 0 790 189918 Mycobacterium sp. KMS species species Mycobacterium sp. QIA-37 311 1561223 0 1 0 1 species Mycobacterium sp. JS623 212767 1420 Mycobacterium sp. YC-RL4 species 1682113 741 0 1 species Mycobacterium sp. MOTT36Y 263 1168287 0 1 0 1 Mycobacterium sp. MCS species 751 164756 164757 810 species Mycobacterium sp. JLS 1 0 8 0 120793 5362 species group 1 0 4 292 Mycobacterium intracellulare species 1353 1767 1203599 202 subspecies Mycobacterium yongonense 1 0 0 1 subspecies Mycobacterium indicus pranii 199 35617 0 1 subspecies Mycobacterium chimaera 222805 660 1764 1989 Mycobacterium avium species 1 0 0 1 Mycobacterium colombiense species 339268 1151 0 1 species Mycobacterium paraintracellulare 201 1138383 species Mycobacterium marseillense 701042 668 0 1 4 0 1518 77643 species group 0 1 species Mycobacterium canettii 487 78331 3 0 1 1773 1031 species Mycobacterium tuberculosis 372 0 1 Mycobacterium bovis biotype 1765 330 1 0 329 33894 biotype Mycobacterium africanum 0 1 species Mycobacterium haemophilum 745 29311 1 0 203 1769 Mycobacterium leprae species 261524 628 species Mycobacterium liflandii 1 0 1781 918 species Mycobacterium marinum 1 0 species Mycobacterium kansasii 650 1768 0 1 0 1 species Mycobacterium dioxanotrophicus 482462 1180 1 0 4 23 family Tsukamurellaceae 1699 85028 3 1 0 1676 2060 genus Tsukamurella 96 Tsukamurella tyrosinosolvens species 57704 964 0 1 1 0 2061 616 Tsukamurella paurometabola species 52 0 1 1653 41404 Corynebacteriaceae family 414 1716 40990 Corynebacterium genus 1312 51 0 1 0 1 Corynebacterium jeikeium species 38289 1663 1 0 136857 776 species Corynebacterium testudinoris 483 161895 Corynebacterium phocae species 1 0 1 0 343 191610 species Corynebacterium atypicum 578 169292 species Corynebacterium aurimucosum 1 0 0 1 Corynebacterium resistens species 258224 578 Corynebacterium flavescens species 28028 415 0 1 1 0 828 161896 species Corynebacterium camporealensis Corynebacterium kroppenstedtii species 424 161879 0 1 1 0 700 43771 species Corynebacterium urealyticum 1 0 1125 108486 Corynebacterium falsenii species 38305 2115 species Corynebacterium vitaeruminis 1 0 1 0 613 42817 Corynebacterium argentoratense species species Corynebacterium glaucum 730 187491 0 1 1 0 349751 1014 Corynebacterium marinum species 191493 1095 Corynebacterium sphenisci species 1 0 species Corynebacterium pseudotuberculosis 507 1719 0 1 species Corynebacterium casei 160386 671 0 1 no rank 1145 2624378 0 2 0 1 species Corynebacterium sp. NML98-0116 492 702967 1 0 653 1487956 species Corynebacterium sp. ATCC 6931 Corynebacterium aquilae species 203263 475 0 1 0 1 species Corynebacterium crudilactis 559 1652495 0 1 species Corynebacterium imitans 805 156978 1721 1053 species Corynebacterium callunae 1 0 [Brevibacterium] flavum species 851 92706 0 1 152794 1168 species Corynebacterium efficiens 1 0 1086 1408191 Corynebacterium deserti species 1 0 species Corynebacterium maris 690 575200 0 1 0 1 species Corynebacterium doosanense 721 1121358 0 1 Corynebacterium mustelae species 571915 475 Corynebacterium epidermidicanis species 1050174 683 0 1 1 0 65058 574 species Corynebacterium ulcerans 1 0 1404244 990 species Corynebacterium glyciniphilum 0 1 Corynebacterium cystitidis species 276 35757 Corynebacterium ammoniagenes species 1697 486 0 1 0 1 Corynebacterium uterequi species 1072256 671 Corynebacterium diphtheriae species 1717 992 0 1 1 0 1071 146827 Corynebacterium simulans species Corynebacterium striatum species 1898 43770 0 1 401472 525 species Corynebacterium ureicelerivorans 1 0 1 0 716 225326 species Corynebacterium halotolerans species Corynebacterium variabile 802 1727 0 1 0 1 Corynebacterium lactis species 1231000 559 Corynebacterium kutscheri species 35755 297 0 1 1 0 1230998 873 species Corynebacterium frankenforstense 1 0 1705 929 Corynebacterium stationis species 0 1 Corynebacterium singulare species 161899 497 Corynebacterium humireducens species 1223514 1144 0 1 463 89154 species Corynebacterium terpenotabidum 1 0 1718 1546 species Corynebacterium glutamicum 1 0 2 0 721 697024 no rank 6 Lawsonella genus 721 1847725 1 0 2 1 0 1528099 715 Lawsonella clevelandensis species 6282 85026 family Gordoniaceae 152 9 1 0 6130 2053 111 genus Gordonia 8 1 0 1 0 728 1004901 species Gordonia iterans 0 1 species Gordonia bronchialis 784 2054 2657482 1813 no rank 2 0 0 1 species Gordonia sp. KTR9 337191 1163 species Gordonia sp. YC-JH1 2059875 650 0 1 1 0 84595 995 Gordonia polyisoprenivorans species species Gordonia phthalatica 979 1136941 0 1 0 1 species Gordonia terrae 720 2055 411 order Streptomycetales 105091 85011 1 0 82 Streptomycetaceae family 914 104680 2062 1 0 81 1 0 5 126 genus Kitasatospora 6359 2063 0 1 Kitasatospora setae species 2066 1597 Kitasatospora aureofaciens species 1311 1894 0 1 no rank 2633591 2031 0 1 1 0 2031 2018025 species Kitasatospora sp. MMS16-BH015 0 1 species Kitasatospora albolonga 1294 68173 1883 97407 3776 genus Streptomyces 75 0 1 Streptomyces formicae species 959 1616117 0 1 553510 903 Streptomyces gilvosporeus species 1 0 0 1 Streptomyces lividans species 1916 1074 1 0 2099 68280 Streptomyces violaceusniger species 47763 3338 species Streptomyces lydicus 1 0 Streptomyces alfalfae species 1642299 1270 0 1 Streptomyces albireticuli species 1940 1355 0 1 0 1 species Streptomyces lavendulae 1914 840 species Streptomyces sp. XZHG99 2049881 752 0 1 0 1 species Streptomyces albus 2708 1888 0 24 no rank 2593676 27428 1961713 1293 Streptomyces sp. MOE7 species 1 0 1 0 1812480 1185 Streptomyces sp. fd1-xmd species 1 0 875 1649184 species Streptomyces sp. CFMR 7 Streptomyces sp. P3 species 2135430 988 0 1 Streptomyces sp. M56 species 2299 1495638 0 1 0 1 Streptomyces sp. CNQ-509 species 444103 1489 species Streptomyces sp. CCM_MD2014 1561022 1096 0 1 0 1 species Streptomyces sp. 769 1205 1262452 1 0 1841249 1508 Streptomyces sp. RTd22 species 0 1 species Streptomyces sp. FR-008 206662 1163 Streptomyces sp. CMB-StM0423 species 1521 2059884 0 1 1 0 465541 871 species Streptomyces sp. Mg1 899 1964449 Streptomyces sp. 3211 species 1 0 0 1 Streptomyces sp. SirexAA-E species 862751 1221 1 0 695 1984801 Streptomyces sp. CLI2509 species 0 1 Streptomyces sp. PAMC 26508 species 1265601 716 1 0 1188 1661694 Streptomyces sp. Tue 6075 species species Streptomyces sp. 4F 782 1751294 0 1 1725411 1383 Streptomyces sp. CdTB01 species 1 0 0 1 species Streptomyces sp. Sge12 1972846 1081 1 0 234612 671 species Streptomyces sp. TN58 0 1 Streptomyces sp. WAC00288 species 2094021 1229 species Streptomyces sp. S8 1837283 892 0 1 0 1 species Streptomyces sp. SAT1 1178 1849967 0 1 Streptomyces pristinaespiralis species 38300 1178 species Streptomyces noursei 1971 1268 0 1 1 0 1907 1269 Streptomyces glaucescens species 2 0 629295 2193 species group species subgroup 1385 1482558 0 1 0 1 Streptomyces globisporus species 1908 1385 1 0 808 1482596 species subgroup 1 0 1911 808 Streptomyces griseus species 0 1 Streptomyces lincolnensis species 1362 1915 0 1 Streptomyces avermitilis species 1157 33903 164348 1316 Streptomyces puniciscabiei species 1 0 Streptomyces cattleya species 29303 1446 0 1 1 0 728 1355015 species Streptomyces pluripotens 1114 408015 species Streptomyces xiamenensis 1 0 1014 1935 Streptomyces violaceoruber species 1 0 1297 362257 Streptomyces vietnamensis species 1 0 1930 1584 Streptomyces scabiei species 1 0 Streptomyces ambofaciens species 926 1889 0 1 species group 2017 1477431 0 2 0 1 Streptomyces sampsonii species 1035 42239 982 1902 Streptomyces coelicolor species 1 0 species Streptomyces alboflavus 1118 67267 0 1 1 0 42684 1040 species Streptomyces collinus 0 1 species Streptomyces niveus 193462 760 868 1038928 Streptomyces xinghaiensis species 1 0 1300 68192 species Streptomyces cyaneogriseus 1 0 species Streptomyces bingchenggensis 379067 1863 0 1 Streptomyces rubrolavendulae species 285473 802 0 1 0 1 Streptomyces venezuelae species 54571 1946 1 0 68202 891 Streptomyces fulvissimus species 0 1 species Streptomyces parvulus 1050 146923 Streptomyces griseochromogenes species 1488 68214 0 1 1901 1022 species Streptomyces clavuligerus 1 0 1 0 1950 1060 Streptomyces peucetius species 1 0 714 1169025 species Streptomyces pratensis 2105 92644 Streptomyces malaysiensis species 1 0 2485 1912 species Streptomyces hygroscopicus 1 0 0 1 Streptomyces leeuwenhoekii species 1437453 1955 0 1 Streptomyces albulus species 1216 68570 Streptomyces chartreusis species 1969 1086 0 1 0 1 Streptomyces sp. S10(2016) species 1319 1783515 1 0 2138 68249 species Streptomyces pactum 1043 1926 species Streptomyces reticuli 1 0 1 0 75293 1767 Streptomyces autolyticus species 85014 1232 14 order Glycomycetales 4 0 1 27 Glycomycetaceae family 85034 1218 0 1 3 0 1 2 27 genus Stackebrandtia 283810 1191 Stackebrandtia nassauensis species 283811 1164 0 1 4 0 1 622452 947 Kineosporiales order 3 family Kineosporiaceae 37 83778 944 0 1 3 1 0 2 15 genus Kineococcus 907 33981 1 0 131568 892 Kineococcus radiotolerans species 0 1 no rank 52018 235 1650658 235 Actinobacteria bacterium IMCC26256 species 1 0 0 1 26 149 order Bifidobacteriales 85004 84214 1 0 25 family Bifidobacteriaceae 7895 84065 31953 2 1 0 1193 196082 1 genus Parascardovia species Parascardovia denticolens 78258 1192 0 1 1 0 2 Gardnerella genus 1 788 2701 1 0 2702 787 species Gardnerella vaginalis 19 0 1 1678 73686 2631 Bifidobacterium genus 2840 1680 Bifidobacterium adolescentis species 1 0 1 0 28025 2539 species Bifidobacterium animalis 1 0 28026 6551 species Bifidobacterium pseudocatenulatum 0 1 Bifidobacterium choerinum species 2140 35760 Bifidobacterium coryneforme species 693 1687 0 1 Bifidobacterium asteroides species 1684 1171 0 1 species Bifidobacterium pseudolongum 1941 1694 0 1 0 1 Bifidobacterium longum species 216816 19039 1681 9639 species Bifidobacterium bifidum 1 0 Bifidobacterium thermophilum species 33905 1860 0 1 species Bifidobacterium breve 1685 10563 0 1 2783 1683 Bifidobacterium angulatum species 1 0 species Bifidobacterium actinocoloniiforme 638619 881 0 1 0 1 2 Bifidobacterium catenulatum species 984 1686 3269 0 1 Bifidobacterium kashiwanohense subspecies 630129 2285 748 1691 species Bifidobacterium indicum 1 0 0 1 species Bifidobacterium scardovii 2441 158787 1957 1689 Bifidobacterium dentium species 1 0 503 196081 genus 1 0 0 1 Scardovia inopinata species 503 78259 3 0 1643683 317 order 317 85032 2 Acidothermaceae family 3 1 0 2 1 0 315 28048 2 genus Acidothermus species Acidothermus cellulolyticus 313 28049 0 1 285 Pseudonocardiales order 85010 35875 0 1 42 family Pseudonocardiaceae 603 2070 35590 0 1 41 7 1 0 9385 1813 120 genus Amycolatopsis 1984 33910 Amycolatopsis mediterranei species 1 0 species Amycolatopsis orientalis 31958 2277 0 1 1 0 1814 1245 species Amycolatopsis methanolica 1 0 1146 208439 species Amycolatopsis japonica 0 2 no rank 2618356 2613 1 0 1413 1911175 species Amycolatopsis sp. BJA-103 species Amycolatopsis sp. AA4 1200 1896961 0 1 1847 7061 genus Pseudonocardia 157 8 0 1 6 0 5337 2619320 no rank 0 1 species Pseudonocardia sp. EC080610-09 1688404 825 1 0 1690815 1063 Pseudonocardia sp. HH130630-07 species Pseudonocardia sp. EC080625-04 species 1096868 757 0 1 Pseudonocardia sp. EC080619-01 species 1096856 811 0 1 0 1 species Pseudonocardia sp. AL041005-10 445576 936 0 1 species Pseudonocardia sp. HH130629-09 945 1641402 Pseudonocardia dioxanivorans species 1567 240495 0 1 6 1 0 5531 65496 66 genus Actinoalloteichus 1470176 1101 species Actinoalloteichus hoggarensis 1 0 no rank 1922 2644606 0 2 Actinoalloteichus sp. GBA129-24 species 1612551 1183 0 1 1 0 739 2072503 Actinoalloteichus sp. AHMU CJ021 species 1262 340345 Actinoalloteichus hymeniacidonis species 1 0 0 1 Actinoalloteichus sp. ADI127-7 species 1612552 1180 2 1 0 957 674734 10 genus Alloactinosynnema 2636053 947 no rank 1 0 0 1 species Alloactinosynnema sp. L-07 1653480 947 1 0 2 Prauserella genus 18 1034 142577 1 0 530584 1016 Prauserella marina species 40566 3130 genus Actinosynnema 36 3 0 1 1 0 42197 1380 Actinosynnema pretiosum species 40567 1714 species Actinosynnema mirum 1 0 Lentzea genus 15 165301 1600 0 1 2 species Lentzea guizhouensis 1585 1586287 0 1 1 0 2 4 genus Saccharopolyspora 1316 1835 0 1 species Saccharopolyspora erythraea 1312 1836 2 0 1 2071 1108 6 Saccharothrix genus 103731 1102 species Saccharothrix espanaensis 1 0 3 genus Saccharomonospora 542 1851 1 0 2 539 1852 species Saccharomonospora viridis 1 0 2 1 0 1591 2029 Kibdelosporangium genus 1 1 0 1590 860235 species Kibdelosporangium phytohabitans 1732 43356 Kutzneria genus 16 2 1 0 0 1 Kutzneria albida species 43357 1716 1 0 33 order Propionibacteriales 225 23720 85009 85015 6690 Nocardioidaceae family 171 13 0 1 182639 974 Kribbella genus 20 2 0 1 species Kribbella flavida 182640 954 0 1 2 1 0 712 2040 Aeromicrobium genus 8 1 0 2041 704 Aeromicrobium erythreum species 2 0 1 116071 1552 genus Micropruina 38 1514 75385 Micropruina glycogenica species 1 0 genus Nocardioides 28 1839 2413 0 1 4 1 0 807 450734 Nocardioides dokdonensis species 912 2045452 species Nocardioides sp. 78 1 0 0 1 no rank 2615069 666 1 0 196162 666 species Nocardioides sp. JS614 1 0 2 Pimelobacter genus 6 868 2044 0 1 Pimelobacter simplex species 862 2045 1 0 19 family Propionibacteriaceae 273 16805 31957 3083 1912216 7 Cutibacterium genus 4 1 0 Cutibacterium acnes species 1747 856 0 1 1 0 1538 33010 Cutibacterium avidum species 0 1 species Cutibacterium granulosum 682 33011 1 0 1692 203133 genus 2633994 1692 no rank 1 0 0 1 species Propionimicrobium sp. Marseille-P3275 1692 1871034 1711 1912215 genus Acidipropionibacterium 4 2 1 0 1707 1748 species Acidipropionibacterium acidipropionici 1 0 1 0 2 genus Microlunatus 12 874 29404 0 1 species Microlunatus phosphovorus 29405 862 1 0 2801844 871 genus 1 0 871 1750 species Pseudopropionibacterium propionicum 4364 72763 Tessaracoccus genus 23 5 1 0 1082 2635419 no rank 1 0 0 1 species Tessaracoccus sp. T2.5-30 1909732 1082 1174 399497 species Tessaracoccus flavescens 1 0 0 1 species Tessaracoccus flavus 980 1610493 1 0 1105 1332264 species Tessaracoccus aquimaris Propionibacterium genus 41 3937 1743 1 0 3 Propionibacterium freudenreichii species 3640 1744 0 1 1 0 2608905 256 no rank 256 671223 species Propionibacterium sp. oral taxon 193 1 0 4 1 0 2594 414714 order Catenulisporales 8 20 family Catenulisporaceae 2586 414877 1 0 3 2 1 0 2566 414878 41 Catenulispora genus Catenulispora acidiphila species 2525 304895 0 1 1643818 780 no rank 2 0 2 1 0 780 147067 Thermobispora genus 4 Thermobispora bispora species 2006 776 0 1 4374 85013 5 Frankiales order 7 1 0 54 Frankiaceae family 4369 74712 1 0 6 4315 1854 60 Frankia genus 5 1 0 1 0 1859 1140 species Frankia alni 0 1 Frankia casuarinae species 106370 731 1 0 1254 298654 species Frankia inefficax no rank 2632575 1130 0 1 1 0 298653 1130 Frankia sp. EAN1pec species 4 1 0 992 622450 order Actinopolysporales 2 family Actinopolysporaceae 8 622451 990 0 1 3 2 0 1 1849 982 Actinopolyspora genus 28 Actinopolyspora erythraea species 414996 954 0 1 order Nakamurellales 11 1610 1643684 1 0 4 0 1 3 family Nakamurellaceae 17 85031 1599 2 0 1 53460 1582 15 Nakamurella genus 1 0 1567 53461 Nakamurella multipartita species 10 Candidatus Nanopelagicales order 2611 2039638 1 0 11 family 2601 2162846 0 10 genus 2039639 438 0 3 Candidatus Nanopelagicus hibericus species 315 1884915 0 1 1 0 61 1884916 species Candidatus Nanopelagicus abundans 62 1884634 Candidatus Nanopelagicus limnes species 1 0 0 1 7 genus Candidatus Planktophila 11 622681 2163 species Candidatus Planktophila versatilis 1884905 488 0 1 species Candidatus Planktophila sulfonica 393 1884904 0 1 573600 232 Candidatus Planktophila limnetica species 1 0 species Candidatus Planktophila lacus 1884913 338 0 1 0 1 species Candidatus Planktophila vernalis 1884907 305 1 0 396 1884914 Candidatus Planktophila dulcis species 19 0 1 2037 15542 order Actinomycetales 33 2049 15509 1370 family Actinomycetaceae 18 0 1 7757 1654 Actinomyces genus 122 9 1 0 0 1 species Actinomyces oris 901 544580 111015 909 Actinomyces radicidentis species 1 0 1 0 623 1960083 Actinomyces gaoshouyii species 0 3 no rank 2609248 3493 1 0 855 1851395 Actinomyces sp. Chiba101 species 712122 1761 species Actinomyces sp. oral taxon 414 1 0 877 2081702 species Actinomyces sp. oral taxon 897 1 0 species Actinomyces sp. VUL4_3 304 1912795 0 1 Actinomyces pacaensis species 1852377 1405 0 1 1653174 773 genus 1 0 1 0 773 59505 Actinotignum schaalii species 0 1 2 genus Trueperella 9 1069494 1513 species Trueperella pyogenes 1661 1504 0 1 genus Mobiluncus 56 2050 1943 0 1 2 1 0 1887 2051 Mobiluncus curtisii species 1 0 2529408 1298 genus 1 0 1298 52773 species Actinomyces meyeri 1 0 2 1 Arcanobacterium genus 855 28263 1 0 28264 854 Arcanobacterium haemolyticum species 20 1 0 18665 85008 43 order Micromonosporales 402 Micromonosporaceae family 28056 18622 0 1 19 1643 168694 genus Salinispora 7 3 1 0 939 168695 species Salinispora tropica 1 0 168697 697 Salinispora arenicola species 1 0 0 1 genus Verrucosispora 84593 6 6 0 1 1865 8485 117 genus Actinoplanes 1866 1749 species Actinoplanes missouriensis 1 0 0 1 Actinoplanes friuliensis species 196914 1998 3 0 4621 2626549 no rank 1311 2033844 species Actinoplanes sp. SE50 1 0 1999 649831 Actinoplanes sp. N902-109 species 1 0 134676 1311 Actinoplanes sp. SE50/110 species 1 0 4174 1873 genus Micromonospora 81 4 1 0 1379 1003110 Verrucosispora maris species 1 0 1 0 47850 1435 Micromonospora aurantiaca species 0 1 no rank 1279 2617518 1 0 1279 648999 species Micromonospora sp. L5 genus Plantactinospora 63 673534 3912 0 1 4 3849 2631981 no rank 3 0 Plantactinospora sp. BB1 species 1061 2071627 0 1 2108470 1255 Plantactinospora sp. BC1 species 1 0 1533 2024580 species Plantactinospora sp. KBS50 1 0 3589 1643682 14 order Geodermatophilales 8 1 0 7 0 1 85030 3575 84 Geodermatophilaceae family genus Modestobacter 8 1620 88138 1 0 2 1612 477641 Modestobacter marinus species 1 0 1 0 2 Geodermatophilus genus 2 934 1860 0 1 species Geodermatophilus obscurus 932 1861 genus Blastococcus 5 937 38501 1 0 2 Blastococcus saxobsidens species 138336 932 0 1 16 0 1 85012 11049 Streptosporangiales order 50 28 family Thermomonosporaceae 2012 2083 0 1 3 2 0 1 2019 2055 genus Thermomonospora 17 1 0 2020 2038 Thermomonospora curvata species 1 0 7 Nocardiopsaceae family 126 4511 83676 2013 3260 47 Nocardiopsis genus 4 0 1 Nocardiopsis dassonvillei species 2014 1258 0 1 782 53437 Nocardiopsis alba species 1 0 280236 1173 Nocardiopsis gilva species 1 0 83677 1125 2 genus Thermobifida 2 0 1 1 0 1123 2021 Thermobifida fusca species family Streptosporangiaceae 75 2004 4405 0 1 5 2 1 0 2712 83681 genus Nonomuraea 17 2593643 2695 no rank 1 0 species Nonomuraea sp. ATCC 55076 1909395 2695 0 1 2 1 0 1618 2000 genus Streptosporangium 53 1565 2001 species Streptosporangium roseum 1 0 16107 200795 2 phylum Chloroflexi 45 1 0 1554 189775 Thermomicrobia class 7 8 1 0 0 4 subclass 1109 85000 1109 85001 19 order Sphaerobacterales 4 1 0 255728 1090 suborder 3 0 0 1 3 family Sphaerobacteraceae 61 85002 1090 0 1 2 Sphaerobacter genus 10 2056 1029 2057 1019 species Sphaerobacter thermophilus 1 0 1 0 3 5 order Thermomicrobiales 438 189776 0 2 family 433 189777 Thermomicrobium genus 1 433 499 1 0 2 0 1 Thermomicrobium roseum species 432 500 12 class Anaerolineae 2477 292625 1 0 6 0 1 5 order Anaerolineales 12 292629 2465 2453 292628 family Anaerolineaceae 5 4 1 0 1 0 1056 1324991 no rank species Anaerolineaceae bacterium oral taxon 439 1056 1889813 0 1 233189 968 genus 1 0 species Anaerolinea thermophila 968 167964 0 1 2019482 424 genus 1 0 0 1 species Brevefilum fermentans 1986204 424 13 class Caldilineae 475962 1497 0 1 5 1484 475963 9 order Caldilineales 4 1 0 3 1 0 1475 475964 5 Caldilineaceae family 233191 1470 19 Caldilinea genus 2 0 1 Caldilinea aerophila species 1451 133453 0 1 Dehalococcoidia class 55 4056 301297 1 0 9 Dehalococcoidales order 4 1202465 2459 0 1 5 10 Dehalococcoidaceae family 1202464 2455 0 1 4 1 0 3 4 genus Dehalococcoides 2445 61434 1 0 620 237581 no rank Dehalococcoides sp. UCH007 species 620 1522671 0 1 species Dehalococcoides mccartyi 1821 61435 0 1 1 0 3 genus Dehalogenimonas 8 1542 670486 1 0 1839801 1000 species Dehalogenimonas formicexedens 0 1 species Dehalogenimonas lykanthroporepellens 552810 534 2952 1382928 58 class Ardenticatenia 5 1 0 Ardenticatenales order 32 2894 1382929 1 0 4 family Ardenticatenaceae 14 2862 1382930 1 0 3 27 genus Candidatus Promineofilum 2848 1988031 1 0 2 1 0 2821 1806508 Candidatus Promineofilum breve species 11 0 1 32061 3569 class Chloroflexia 15 3554 32064 Chloroflexales order 19 10 1 0 4 0 1707 1508595 suborder 1 0 4 family Roseiflexaceae 10 1707 1508635 1 0 3 11 genus Roseiflexus 1697 120961 2609473 1101 no rank 1 0 357808 1101 Roseiflexus sp. RS-1 species 1 0 585 120962 species Roseiflexus castenholzii 1 0 1508594 1828 suborder 5 0 1 0 5 1 family Chloroflexaceae 1828 1106 1 0 4 genus Chloroflexus 4 1827 1107 Chloroflexus aggregans species 152260 487 0 1 1 0 2 668 Chloroflexus aurantiacus species 1336 1108 strain Chloroflexus sp. Y-400-fl 480224 668 0 1 56 0 45949 203691 phylum 0 1 56 Spirochaetia class 104 203692 45949 1 0 7 order Brachyspirales 4 8568 1643686 89 Brachyspiraceae family 8564 143786 1 0 6 0 1 5 Brachyspira genus 1539 29521 8475 0 1 species Brachyspira intermedia 1606 84377 Brachyspira hyodysenteriae species 159 2130 0 1 1 0 52584 2454 species Brachyspira pilosicoli species Brachyspira murdochii 84378 746 0 1 40 0 1 136 33649 1753 order Spirochaetales 1 0 17 family Borreliaceae 1 2420 1643685 Borrelia genus 6 1187 138 1 0 8 141 81 Borrelia parkeri species 1 0 Borrelia turicatae species 142 230 0 1 species Borrelia duttonii 40834 152 0 1 species Borrelia anserina 76 143 0 1 381 47466 Borrelia miyamotoi species 1 0 1 0 117 140 species Borrelia hermsii 1 0 144 44449 species Borrelia recurrentis 0 1 8 14 Borreliella genus 64895 1232 1674146 122 Borrelia mayonii species 1 0 species Borreliella garinii 29519 153 0 1 0 1 species Borreliella burgdorferi 139 423 29518 323 Borreliella afzelii species 1 0 39 64897 Borreliella bissettii species 1 0 0 1 Borreliella bavariensis species 99 664662 species Borreliella valaisiana 62088 59 0 1 22 0 1 137 29476 670 family Spirochaetaceae 0 1 12 genus Treponema 189 157 19589 1419 88058 species Treponema primitia 1 0 Treponema succinifaciens species 4155 167 0 1 150829 1672 species Treponema azotonutricium 1 0 3345 2638727 no rank 1 0 1 0 1539298 3345 species Treponema sp. OMZ 838 0 1 species Treponema pedis 760 409322 Treponema caldarium species 757 215591 0 1 species Treponema putidum 3098 221027 0 1 0 1 species Treponema paraluiscuniculi 146 53435 1 0 1675 158 Treponema denticola species 0 1 species Treponema brennaborense 2232 81028 0 1 species Treponema pallidum 141 160 2149 146 genus Spirochaeta 9 3 1 0 1 0 1080 154 species Spirochaeta thermophila 46355 1060 Spirochaeta africana species 1 0 genus Sphaerochaeta 23 399320 3893 0 1 4 species Sphaerochaeta pleomorpha 1131707 1028 0 1 Sphaerochaeta coccoides species 1253 273376 0 1 0 1 species Sphaerochaeta globosa 1131703 1589 0 1 genus 2223 1911556 0 1 Sediminispirochaeta smaragdinae species 55206 2223 952 1616789 genus 1 0 952 1307761 species Salinispira pacifica 1 0 0 8 order 3628 1643688 8 0 1 170 3628 1 family Leptospiraceae 1 0 635 338321 genus 29510 635 species Turneriella parva 1 0 6 1 0 2992 171 7 genus Leptospira species Leptospira biflexa 172 474 0 1 species Leptospira alstonii 28452 351 0 1 species Leptospira interrogans 173 1320 0 1 1 0 28183 529 species Leptospira santarosai Leptospira borgpetersenii species 311 174 0 1 258 0 47521 2157 superkingdom 0 47 clade 1783275 3992 0 11 phylum 651137 1171 549 1643678 1 Nitrososphaeria class 5 1 0 Nitrososphaerales order 2 1033996 439 0 1 3 0 1 2 5 family Nitrososphaeraceae 1033997 437 1 0 497726 432 genus 0 1 Nitrososphaera viennensis species 1034015 432 1 0 1968909 109 order family 1968910 109 0 1 genus 109 498374 0 1 0 1 species Candidatus Nitrosocaldus islandicus 109 2045011 no rank 651142 233 0 3 1593364 100 genus 1 0 species Candidatus Nitrosopelagicus brevis 1410606 100 0 1 2 0 133 1825023 genus Candidatus Nitrosotenuis cloacae species 1603555 93 0 1 40 1846278 Candidatus Nitrosotenuis sp. AQ6f species 1 0 0 3 order 31932 389 389 338190 family 3 0 1 0 1993653 82 genus 1 0 1898749 82 species Candidatus Nitrosomarinus catalina 0 2 genus 338191 307 0 1 species Candidatus Nitrosopumilus adriaticus 1580092 183 0 1 Candidatus Nitrosopumilus sediminis species 1229909 124 phylum 2785 28889 0 35 class 2785 183924 0 35 13 1 0 794 114380 1 Desulfurococcales order 9 0 2272 550 family 51 2273 genus 2 0 0 1 Desulfurococcus amylolyticus species 27 94694 0 1 Desulfurococcus mucosus species 24 2275 125 54253 genus 1 0 0 1 species Thermosphaera aggregans 54254 125 3 1 0 173 2279 genus Staphylothermus 1 1 0 2280 50 species Staphylothermus marinus 1 0 84599 122 Staphylothermus hellenicus species 2 0 54258 161 genus Ignicoccus islandicus species 133 54259 0 1 0 1 Ignicoccus hospitalis species 160233 28 1 0 40 477695 genus 0 1 species Thermogladius calderae 1200300 40 3 0 2307 243 family genus 21 54251 0 1 21 54252 species Pyrolobus fumarii 1 0 0 1 genus 54247 48 54248 48 Hyperthermus butylicus species 1 0 1 0 174 2308 genus 1 0 174 1273541 species Pyrodictium delaneyi 0 8 order 2281 1296 8 0 118883 1296 family 0 1 genus 2100760 64 Sulfolobus solfataricus species 64 2287 0 1 0 1 genus 69655 274 species Sulfolobus tokodaii 111955 274 0 1 116 41980 genus 2 0 1 0 21 43687 species Metallosphaera sedula 1 0 95 1006005 species Metallosphaera cuprina 3 0 477 2284 genus species Sulfolobus acidocaldarius 2285 213 0 1 0 1 no rank 85 2641160 1 0 85 1891280 species Sulfolobus sp. A20 43080 179 Sulfolobus islandicus species 1 0 1 0 12914 365 genus 0 1 species Acidianus hospitalis 365 563177 order 61 871006 0 2 0 1 family 871007 25 genus 25 105850 0 1 0 1 species Acidilobus saccharovorans 242703 25 255472 36 family 1 0 genus 200414 36 0 1 1 0 200415 36 species Caldisphaera lagunensis order 2266 634 0 12 0 5 family 229 114378 genus Thermofilum 1 229 2268 1 0 5 Thermofilum carboxyditrophus species 1483572 24 0 1 2269 49 species Thermofilum pendens 1 0 0 1 Thermofilum uzonense species 1550241 129 0 1 Thermofilum adornatus species 26 1365176 405 2267 Thermoproteaceae family 37 7 1 0 1 0 25 2276 genus 2277 25 Pyrobaculum islandicum species 1 0 2 0 91 164450 genus 43 985052 species Vulcanisaeta moutnovskia 1 0 164451 48 species Vulcanisaeta distributa 1 0 0 1 genus 29 76886 0 1 Caldivirga maquilingensis species 29 76887 2270 223 genus 2 0 151 2271 species Thermoproteus tenax 1 0 1 0 184117 72 species Thermoproteus uzoniensis phylum 51967 36 0 1 genus 498845 36 0 1 0 1 species Candidatus Korarchaeum cryptofilum 498846 36 0 1 clade 1783276 165 165 1801631 phylum 1 0 1 0 2490204 165 genus 1 0 165 1920749 species Candidatus Micrarchaeota archaeon Mia14 2 phylum Euryarchaeota 43364 28890 1 0 210 183980 1382 class Archaeoglobi 16 10 0 1 9 0 2231 1366 order 2232 1366 family 9 0 0 1 2 genus Ferroglobus 1 54260 227 1 0 54261 226 Ferroglobus placidus species genus 190818 291 0 2 0 1 Geoglobus ahangari species 201 113653 1 0 565033 90 species Geoglobus acetivorans 848 2233 1 Archaeoglobus genus 5 1 0 84156 46 species Archaeoglobus profundus 1 0 1 0 2234 211 species Archaeoglobus fulgidus 471 1316941 Archaeoglobus sulfaticallidus species 1 0 119 58290 Archaeoglobus veneficus species 1 0 clade 2290931 26161 0 104 46 1 0 12849 224756 Methanomicrobia class 24 7 Methanomicrobiales order 3299 2191 1 0 13 family 196137 330 0 1 2202 330 genus 1 0 0 1 Methanospirillum hungatei species 2203 330 313 88404 family 1 0 2192 313 genus 1 0 1 0 313 83984 species Methanocorpusculum labreanum family 1263 2194 0 5 4 0 1 45989 1025 4 genus Methanoculleus no rank 299 2619537 0 1 1 0 299 86622 species Methanoculleus sp. MAB1 species Methanoculleus bourgensis 413 83986 0 1 Methanoculleus marisnigri species 2198 309 0 1 230355 238 genus 1 0 species Methanolacinia petrolearia 238 54120 0 1 1198451 1386 family 5 0 1 0 2 1 Methanosphaerula genus 593 475087 Methanosphaerula palustris species 475088 592 0 1 395331 793 3 genus Methanoregula 3 0 1 0 1 Methanoregula boonei species 358766 149 1 0 641 882104 Methanoregula formicica species 973 570264 order Methanocellales 37 4 1 0 2 Methanocellaceae family 570265 936 0 1 3 genus 570266 934 0 2 128 1175444 species Methanocella conradii 1 0 0 1 species Methanocella arvoryzae 806 1175445 0 1 28 order Methanosarcinales 5 94695 8553 23 0 1 2206 7710 family Methanosarcinaceae 65 genus 101191 436 0 1 0 1 species Methanomethylovorans hollandica 436 101192 44 genus Methanosarcina 2207 5916 0 1 13 0 1 Methanosarcina horonobensis species 448 418008 170861 138 Methanosarcina lacustris species 1 0 1 0 2209 659 Methanosarcina mazei species species Methanosarcina siciliae 38027 445 0 1 2215 386 Methanosarcina vacuolata species 1 0 0 1 species Methanosarcina thermophila 226 2210 1762 2644672 no rank 4 0 1 0 1434100 360 species Methanosarcina sp. MTP4 species Methanosarcina sp. Kolksee 1434099 369 0 1 1434103 424 species Methanosarcina sp. WWM596 1 0 609 1434102 Methanosarcina sp. WH1 species 1 0 1541 2208 species Methanosarcina barkeri 1 0 1 0 267 2214 species Methanosarcina acetivorans 95 196136 genus 1 0 species Methanosalsum zhilinae 95 39669 0 1 0 1 genus 304 2321 0 1 species Methanohalobium evestigatum 2322 304 0 2 genus 364 2225 1 0 29291 137 Methanococcoides burtonii species 227 2226 species Methanococcoides methylutens 1 0 0 2 genus 2175 305 1 0 109 2176 species Methanohalophilus mahii 0 1 species Methanohalophilus halophilus 2177 196 1 0 2 4 Methanolobus genus 225 2220 1 0 420950 221 species Methanolobus psychrophilus 1 0 4 34 Methanosaetaceae family 838 143067 3 0 1 2222 804 genus Methanothrix 1 species Methanothrix soehngenii 2223 335 0 1 1 0 468 301375 Methanosaeta harundinacea species 183963 13312 class Halobacteria 111 58 0 1 order Haloferacales 51 1644055 3629 0 1 17 1103 1963271 6 Halorubraceae family 8 1 0 1644057 332 2 genus Salinigranum 2 0 1 0 1 Salinigranum rubrum species 330 755307 0 1 2 Halopenitus genus 35 1209988 258 Halopenitus persicus species 223 1048396 0 1 56688 507 8 Halorubrum genus 3 0 1 Halorubrum lacusprofundi species 208 2247 0 1 291 29284 Halorubrum trapanicum species 1 0 1 0 2678336 465 no rank 1 0 465 756883 halophilic archaeon DL31 species Haloferacaceae family 13 1644056 2010 0 1 7 434 60846 genus 1 0 434 60847 species Halogeometricum borinquense 1 0 1406 2251 20 Haloferax genus 4 1 0 0 1 Haloferax gibbonsii species 500 35746 1 0 2246 546 Haloferax volcanii species 2252 340 Haloferax mediterranei species 1 0 genus 293431 157 0 1 1 0 293091 157 Haloquadratum walsbyi species 22 0 1 2235 5250 order Halobacteriales 46 family Haloarculaceae 43 1963268 3079 0 1 13 1 0 306 1073987 genus 1 0 306 2648975 no rank 0 1 Halorientalis sp. IM1011 species 1932360 306 0 2 genus 146825 797 0 1 Halorhabdus tiamatea species 430914 184 613 146826 species Halorhabdus utahensis 1 0 0 2 genus 63743 419 1 0 156 416273 species Natronomonas moolapensis species Natronomonas pharaonis 263 2257 0 1 0 1 2 genus Halomicrobium 2 203135 243 species Halomicrobium mukohataei 57705 241 0 1 5 0 1 2237 1271 21 Haloarcula genus 0 1 species Haloarcula taiwanensis 1932004 226 no rank 2624677 394 0 1 1 0 394 1592728 Haloarcula sp. CBA1115 species 1 0 51589 416 species Haloarcula hispanica species Haloarcula marismortui 2238 214 0 1 1 0 8 Halobacteriaceae family 6 2125 2236 1 0 4 12 Halobacterium genus 1361 2239 Halobacterium salinarum species 2242 292 0 1 Halobacterium hubeiense species 697 1407499 0 1 no rank 2668073 360 0 1 360 751944 Halobacterium sp. DL1 species 1 0 0 1 genus 1980514 175 0 1 species Halodesulfurarchaeum formicicum 1873524 175 1 0 261 1656823 genus 261 1604004 Halanaeroarchaeum sulfurireducens species 1 0 0 1 genus 322 332246 413810 322 species Halalkalicoccus jeotgali 1 0 18 1 0 4322 1644060 40 Natrialbales order 29 family Natrialbaceae 1644061 4282 0 1 17 0 2 genus 714 88723 0 1 species Natrinema pellirubrum 69525 378 no rank 336 2622230 0 1 336 406552 species Natrinema sp. J7-2 1 0 genus Salinarchaeum 1 1269201 434 0 1 2 no rank 433 2621923 0 1 1 0 1333523 433 species Salinarchaeum sp. Harcht-Bsk1 3 1 0 697 121871 Haloterrigena genus 3 62320 588 Haloterrigena turkmenica species 1 0 0 1 species Haloterrigena daqingensis 106 588898 1 0 387342 449 genus 449 387343 species Halopiger xanaduensis 1 0 409 29287 genus Natronococcus 2 2 1 0 1 0 407 29288 species Natronococcus occultus 0 1 genus 336 2256 0 1 species Natronobacterium gregoryi 44930 336 genus 376 63742 0 1 species Natrialba magadii 376 13769 0 1 1 0 2 Halobiforma genus 5 478 203193 473 229731 Halobiforma lacisalsi species 1 0 2 1 0 360 353799 Halostagnicola genus 3 353800 357 species Halostagnicola larsenii 1 0 19 0 2283796 3154 clade 2 0 242 1803510 clade 0 2 genus 242 379546 1 0 379547 86 Aciduliprofundum boonei species 1 0 2633939 156 no rank 673860 156 species Aciduliprofundum sp. MAR08-339 1 0 17 0 1 183967 2912 10 class Thermoplasmata no rank 890 1234666 0 1 species methanogenic archaeon ISO4-H5 1495144 890 0 1 order Methanomassiliicoccales 1 1235850 665 0 1 6 2 0 201 2517203 family 1 0 2 Candidatus Methanomethylophilus genus 5 201 1291539 0 1 Candidatus Methanomethylophilus alvus species 196 1291540 1577788 463 12 family Methanomassiliicoccaceae 3 0 1 0 1 genus 1080709 287 287 1406512 species Candidatus Methanomassiliicoccus intestinalis 1 0 genus 164 1607807 0 1 1 0 1577791 164 species Candidatus Methanoplasma termitum 9 0 1 2301 1347 1 Thermoplasmatales order 46630 91 family 1 0 genus 46631 91 0 1 species Picrophilus torridus 82076 91 0 1 46659 333 family 2 0 0 2 genus 333 2302 Thermoplasma volcanium species 39 50339 0 1 1 0 2303 294 Thermoplasma acidophilum species 1 0 1919231 631 no rank 0 1 species Thermoplasmatales archaeon BRNA1 1054217 631 family 122 90142 0 2 genus 122 74968 0 2 69 97393 Ferroplasma acidarmanus species 1 0 1 0 74969 53 species Ferroplasma acidiphilum family 169 1747776 0 2 0 1 2 2 genus Cuniculiplasma 1747777 169 1673428 167 species Cuniculiplasma divulgatum 1 0 0 1 40 9 class Thermococci 183968 5014 2258 5005 21 Thermococcales order 39 0 1 2259 4984 family 38 0 genus 83867 61 0 1 species Palaeococcus pacificus 971279 61 0 1 8 0 1 2260 793 genus Pyrococcus 3 1008460 69 species Pyrococcus yayanosii 1 0 Pyrococcus abyssi species 31 29292 0 1 species Pyrococcus kukulkanii 81 1609559 0 1 0 2 no rank 2629106 299 0 1 species Pyrococcus sp. NA2 342949 223 1 0 76 1183377 species Pyrococcus sp. ST04 0 1 species Pyrococcus furiosus 2261 216 94 53953 species Pyrococcus horikoshii 1 0 4130 2263 35 genus Thermococcus 29 1 0 Thermococcus guaymasensis species 110164 74 0 1 1 0 2265 152 Thermococcus litoralis species Thermococcus peptonophilus species 91 53952 0 1 0 1 species Thermococcus barophilus 55802 122 0 1 species Thermococcus piezophilus 69 1712654 0 1 Thermococcus onnurineus species 342948 106 0 6 no rank 798 2627626 1 0 246969 125 species Thermococcus sp. AM4 1042877 232 Thermococcus sp. 4557 species 1 0 1 0 165 1674923 Thermococcus sp. 2319x1 species 122420 56 species Thermococcus sp. P6 1 0 Thermococcus sp. 5-4 species 102 2008440 0 1 0 1 Thermococcus sp. EXT12c species 118 2016361 1 0 195522 146 species Thermococcus nautili 214 187880 Thermococcus radiotolerans species 1 0 species Thermococcus profundus 49899 271 0 1 1 0 582419 68 species Thermococcus paralvinellae 1505907 115 species Thermococcus eurythermalis 1 0 1 0 203 2264 Thermococcus celer species Thermococcus siculi species 72803 90 0 1 1 0 71997 80 species Thermococcus gorgonarius 0 1 Thermococcus cleftensis species 163003 90 Thermococcus gammatolerans species 173 187878 0 1 species Thermococcus barossii 54077 210 0 1 56 54262 Thermococcus chitonophagus species 1 0 277988 352 species Thermococcus thioreducens 1 0 Thermococcus kodakarensis species 311400 205 0 1 172049 280 Thermococcus sibiricus species 1 0 71998 130 species Thermococcus pacificus 1 0 clade 7651 2283794 0 36 Methanobacteria class 3 4878 183925 1 0 21 1 0 20 order Methanobacteriales 1 4875 2158 1 0 2178 217 family genus 2179 217 0 1 0 1 species Methanothermus fervidus 217 2180 18 0 4657 2159 family 650 2316 genus 1 0 0 1 species Methanosphaera stadtmanae 2317 650 0 7 genus 1743 2160 2 0 2627676 320 no rank 1 0 117 1379702 Methanobacterium sp. MB1 species species Methanobacterium sp. MZ-A1 1911685 203 0 1 59277 182 species Methanobacterium subterraneum 1 0 877455 280 Methanobacterium lacus species 1 0 118062 322 species Methanobacterium congolense 1 0 1 0 121 868131 species Methanobacterium paludis Methanobacterium formicicum species 2162 518 0 1 1886 2172 genus 6 0 0 1 species Methanobrevibacter olleyae 294671 232 2 0 2638681 246 no rank 124 1609968 Methanobrevibacter sp. YE315 species 1 0 122 224719 Methanobrevibacter sp. AbM4 species 1 0 0 1 Methanobrevibacter millerae species 230361 249 0 1 Methanobrevibacter ruminantium species 83816 247 1 0 912 2173 species Methanobrevibacter smithii 4 0 378 145260 genus 66 145262 species Methanothermobacter thermautotrophicus 1 0 1 0 2631116 53 no rank 1 0 53 866790 Methanothermobacter sp. CaT2 species 145261 31 Methanothermobacter wolfeii species 1 0 228 145263 Methanothermobacter marburgensis species 1 0 0 15 class 2773 183939 1 0 15 2 order Methanococcales 2773 2182 8 0 1025 196117 family 129 196119 13 genus Methanotorris 2 1 0 1 0 2189 116 species Methanotorris igneus 6 0 896 196118 genus 67760 106 species Methanocaldococcus infernus 1 0 1 0 2190 85 Methanocaldococcus jannaschii species 101 83171 species Methanocaldococcus fervens 1 0 0 1 Methanocaldococcus bathoardescens species 298 1301915 species Methanocaldococcus vulcanius 73913 71 0 1 235 2641196 no rank 1 0 1 0 644281 235 Methanocaldococcus sp. FS406-22 species 2183 1746 1 family Methanococcaceae 6 0 1 155862 103 genus 1 0 species Methanothermococcus okinawensis 103 155863 0 1 2184 1642 genus 4 0 1195 39152 Methanococcus maripaludis species 1 0 1 0 42879 136 species Methanococcus aeolicus species Methanococcus voltae 2188 243 0 1 species Methanococcus vannielii 68 2187 0 1 0 name 1 0