members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4302 23141035 13406 29 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 1 0 0 name Bacteria 1 superkingdom 2 6 0 23112887 4042 200783 phylum 0 19 1632 class 187857 1 Aquificae 1 1632 19 0 32069 order 1 Aquificales 1 1470 16 0 801 11 0 17 64898 family 1 Aquificaceae 75905 genus 0 2 186 1 149 0 species 75906 Thermocrinis ruber 37 1 0 136094 species Thermocrinis albus 168657 genus 7 Hydrogenobaculum 1 466 6 0 5 459 0 2622382 no rank 380749 species Hydrogenobaculum sp. Y04AAS1 55 1 0 547145 species Hydrogenobaculum sp. SHO 1 101 0 547146 species Hydrogenobaculum sp. SN 1 101 0 species 547143 Hydrogenobaculum sp. 3684 1 101 0 101 1 0 547144 species Hydrogenobaculum sp. HO 0 1 36 genus 939 36 1 0 species 940 Hydrogenobacter thermophilus 2713 genus 0 1 96 0 1 96 Aquifex aeolicus 63363 species 1 30 0 no rank 90150 412592 genus 30 1 0 1 30 0 412593 species Thermosulfidibacter takaii 0 638 3 224027 family 112 1 0 genus 182899 0 1 112 Persephonella marina species 309805 0 2 526 212790 genus 0 138 1 Sulfurihydrogenibium azorense species 309806 0 1 388 2619248 no rank 388 1 0 436114 species Sulfurihydrogenibium sp. YO3AOP1 1485951 order 161 2 0 family 558314 2 161 0 64159 genus 1 102 0 0 102 1 Desulfurobacterium thermolithotrophum 64160 species 1 59 0 171868 genus Thermovibrio ammonificans 228745 species 0 1 59 1930617 phylum 529 2 0 0 2 529 class 1962850 529 2 0 1962852 order 2 family 1962854 1 Calditrichaceae 529 2 0 527 1 0 187144 genus Caldithrix abyssi 187145 species 0 1 527 Acidobacteria 1 phylum 57723 2 0 15 2152 13 2024 0 9 204432 class 1 Acidobacteriia 0 3 248 1 Solibacterales 2 order 332160 332161 family 0 2 246 0 246 2 Candidatus Solibacter 1 genus 332162 2 0 244 1 Candidatus Solibacter usitatus 332163 species 1 Acidobacteriales 17 order 204433 0 9 1767 1750 8 0 4 family 204434 1 Acidobacteriaceae 658061 genus 0 1 255 255 1 0 658062 species Candidatus Koribacter versatilis 1 Acidobacterium 1 genus 33973 0 2 331 330 1 0 species 33075 Acidobacterium capsulatum genus 392733 2 507 0 1 237 0 870903 species Terriglobus saanensis 0 270 1 Terriglobus roseus species 392734 0 2 653 genus 940557 Granulicella tundricola 940615 species 0 1 433 1 220 0 940614 species Granulicella mallensis 1 126 0 class 1562566 126 1 0 genus 458032 126 1 0 458033 species Chloracidobacterium thermophilum 348 4 0 phylum 200938 348 4 0 2 class 118001 1 Chrysiogenetes order 189769 4 Chrysiogenales 1 3 346 0 342 2 0 189770 family 1 Chrysiogenaceae 1 0 341 1 genus 393029 Desulfurispirillum indicum species 936456 0 341 1 337 17483036 0 1783270 clade 0 2 531 65842 phylum class 204430 0 531 2 0 531 2 218872 order 0 2 531 Fibrobacteraceae 1 family 204431 1 530 1 0 832 genus 1 530 0 833 species Fibrobacter succinogenes 8 521 0 phylum 142182 5 class 219685 1 Gemmatimonadetes 521 8 0 1 Gemmatimonadales 2 order 219686 0 516 7 Gemmatimonadaceae 1 219687 family 6 0 514 6 0 3 319 1 Gemmatimonas 2 173479 genus 0 168 1 Gemmatimonas phototrophica species 1379270 Gemmatimonas aurantiaca species 173480 0 149 1 2 189 0 1 genus 1706036 1 Gemmatirosa Gemmatirosa kalamazoonesis 861299 species 0 188 1 127 1 0 456828 phylum 0 127 1 456826 genus 127 1 0 species 456827 Candidatus Cloacimonas acidaminovorans 0 326 17481857 68336 clade 1134404 phylum 3 631 0 0 631 3 1 Ignavibacteria 2 class 795747 629 2 0 795748 order 1 265 0 1334117 family 265 1 0 genus 1134403 1 265 0 1134405 species Melioribacter roseus 0 364 1 795749 family genus 795750 1 364 0 Ignavibacterium album 591197 species 0 1 364 0 21 3756 phylum 1090 class 191410 31 Chlorobia 1 21 3756 0 0 20 3725 Chlorobiales 1 order 191411 32 1 Chlorobiaceae 7 family 191412 0 19 3693 Prosthecochloris 1 1101 genus 1 0 5 871 2632826 no rank 3 619 0 species 1974213 Prosthecochloris sp. HL-130-GSB 1 162 0 1868325 species Prosthecochloris sp. CIB 2401 1 168 0 species 281093 Prosthecochloris sp. GSB1 289 1 0 Prosthecochloris aestuarii species 1102 0 1 251 100715 genus 171 1 0 1 171 0 species 100716 Chloroherpeton thalassium 0 1766 8 274493 no rank 3 693 0 genus 1099 1 Pelodictyon 1 species 1100 Pelodictyon luteolum 354 1 0 Pelodictyon phaeoclathratiforme 34090 species 0 338 1 0 1073 5 1 Chlorobium 3 1091 genus 0 111 1 Chlorobium chlorochromatii 337090 species 1 110 0 species 1094 Chlorobium phaeovibrioides 285 1 0 species 1092 Chlorobium limicola Chlorobium phaeobacteroides species 1096 0 564 1 genus 256319 4 Chlorobaculum 1 878 4 0 0 1 417 Chlorobaculum limnaeum species 274537 170 1 0 1097 species Chlorobaculum tepidum 1 287 0 species 274539 Chlorobaculum parvum 0 17477470 302 1 Bacteroidetes 17 976 phylum Bacteroidia 1 200643 class 56 0 17316985 67 order 171549 422 Bacteroidales 1 17313327 58 0 0 5 8065001 333046 no rank 0 2 329 1 Candidatus Azobacteroides 3 genus 511434 Candidatus Azobacteroides pseudotrichonymphae 511435 species 0 326 1 0 8064672 3 909656 genus 0 1 7008432 Bacteroides vulgatus species 821 376805 species Bacteroides salanitronis 63197 1 0 0 993043 1 Bacteroides dorei species 357276 6 7848 0 2005520 family 4 genus 294702 1 Proteiniphilum 3214 2 0 0 1 3210 Proteiniphilum saccharofermentans 1642647 species 1 genus 1784836 1 Fermentimonas 2 1459 0 1458 1 0 1562970 species Fermentimonas caenicola Petrimonas 1 genus 307628 4 0 2 3175 3171 1 0 species 1642646 Petrimonas mucosa 7 518976 0 2005525 family 24 Tannerellaceae 1 2 genus 195950 1 Tannerella 34573 3 0 Tannerella forsythia 28112 species 0 31812 1 no rank 2620507 0 2759 1 0 2759 1 Tannerella sp. oral taxon HOT-286 712710 species 3 484379 0 74 genus 375288 1 Parabacteroides 429194 1 0 no rank 2649774 0 429194 1 Parabacteroides sp. CT06 species 2025876 1 55111 0 species 823 Parabacteroides distasonis 1853231 family 1 Odoribacteraceae 1 2 132809 0 genus 283168 1 132808 0 species 28118 Odoribacter splanchnicus 1 132808 0 0 11 7964674 1 Bacteroidaceae 34 815 family 0 7964640 10 1 Bacteroides 73261 genus 816 4594406 1 0 47678 species Bacteroides caccae 0 823607 1 Bacteroides thetaiotaomicron species 818 Bacteroides helcogenes species 290053 0 142521 1 Bacteroides ovatus species 28116 0 762186 1 Bacteroides heparinolyticus species 28113 0 1 105492 0 371196 1 Bacteroides caecimuris species 1796613 Bacteroides fragilis species 817 0 1 765500 0 223407 1 Bacteroides cellulosilyticus 246787 species species 28119 Bacteroides zoogleoformans 1 103064 0 Prevotellaceae 1 171552 family 3 0 344487 11 genus 838 84 Prevotella 1 10 344484 0 1 9055 0 species 589436 Prevotella fusca 2968 1 0 1177574 species Prevotella jejuni 2638335 no rank 0 1 797 797 1 0 652716 species Prevotella sp. oral taxon 299 0 2696 1 Prevotella enoeca species 76123 0 312712 1 Prevotella intermedia 28131 species Prevotella ruminicola species 839 0 4460 1 52227 species Prevotella dentalis 4151 1 0 0 1 4070 Prevotella denticola species 28129 species 28132 Prevotella melaninogenica 1 3491 0 1 Paludibacteraceae 1 2005523 family 0 3 1804 Paludibacter 1 genus 346096 1 0 1803 2 Paludibacter propionicigenes 185300 species 0 1 1802 4919 4 0 171551 family 7 Porphyromonadaceae 1 Porphyromonas 1 836 genus 7 0 4912 3 Porphyromonas gingivalis species 837 0 4223 1 1 682 0 species 28123 Porphyromonas asaccharolytica 1 618 0 185291 no rank 0 1 618 Bacteroidales bacterium CF species 1400053 8 family 2005519 1 Barnesiellaceae 3 136281 0 0 136273 2 1 Barnesiella 22 397864 genus species 397865 Barnesiella viscericola 1 136251 0 1 Rikenellaceae 5 171550 family 0 135488 4 genus 239759 13 Alistipes 1 2 134346 0 species 214856 Alistipes finegoldii 134333 1 0 genus 1611681 1137 1 0 Mucinivorans hirudinis species 1433126 0 1137 1 0 3602 8 order 1970189 1078 2 0 family 1573805 3 Marinifilaceae 1 2060722 genus 0 1 1075 0 1 1075 Marinifilaceae bacterium SPP2 1717717 species 0 353 2 1 Salinivirgaceae 1 1970190 family 352 1 0 genus 1970191 Salinivirga cyanobacteriivorans species 1307839 0 1 352 1471398 family 0 2 1526 1 1471399 genus 1 Draconibacterium 2 1526 0 species 1168034 Draconibacterium orientale 1 1525 0 1 Marinilabiliaceae 2 family 558415 0 2 645 genus 1193324 1 643 0 0 1 643 Alkalitalea saponilacus species 889453 9 order 1100069 1 Bacteroidetes Order II. Incertae sedis 6 1320 0 1311 5 0 family 563843 6 Rhodothermaceae 1 146918 genus 199 1 0 1 199 0 146919 species Salinibacter ruber 0 491 1 no rank 1196022 1 491 0 1779382 species Rhodothermaceae bacterium RA 0 2 615 Rhodothermus 1 29548 genus 2 29549 species Rhodothermus marinus 1 613 0 0 22 12839 Sphingobacteriia 1 117747 class 13 21 12826 0 200666 order 56 Sphingobacteriales 1 15 84566 family 1 Sphingobacteriaceae 12770 20 0 12 84567 genus 1 Pedobacter 4432 6 0 0 1 1033 no rank 2628915 species 1727164 Pedobacter sp. PACM 27299 1 1033 0 0 1074 1 Pedobacter heparinus species 984 539 1 0 188932 species Pedobacter cryoconitis 1087 1 0 430522 species Pedobacter steynii 0 687 1 Pedobacter ginsengisoli 363852 species 2 1156 0 929509 genus 8 Solitalea 1 Solitalea canadensis 995 species 0 1 1148 753 1 0 no rank 84568 0 753 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1986952 species 0 6 3914 1 Sphingobacterium 8 genus 28453 4 3087 0 no rank 2609468 species 743722 Sphingobacterium sp. 21 1 626 0 0 876 1 Sphingobacterium sp. B29 1933220 species 2003121 species Sphingobacterium sp. G1-14 1 894 0 1 691 0 species 1538644 Sphingobacterium sp. ML3W 1 819 0 species 1010 Sphingobacterium mizutaii genus 423349 1615 3 0 species 1550579 Mucilaginibacter gotjawali 608 1 0 2617802 no rank 497 1 0 Mucilaginibacter sp. PAMC 26640 1300914 species 0 1 497 0 510 1 Mucilaginibacter sp. BJC16-A31 1234841 species 1649482 genus 0 1 885 species 151895 Pseudopedobacter saltans 885 1 0 768503 class 40 Cytophagia 1 51 24219 0 0 50 24179 1 Cytophagales 61 768507 order 0 3 368 1 Bernardetiaceae 1 family 1937968 genus 1937972 1 Bernardetia 1 367 2 0 1 366 0 999 species Bernardetia litoralis family 200667 0 3 1808 2 934 0 2 59739 genus 1 Flammeovirga 2637820 no rank 0 1 932 1191459 species Flammeovirga sp. MY04 1 932 0 1 874 0 no rank 340671 1257021 species Flammeovirgaceae bacterium 311 1 874 0 family 563798 5 2282 0 0 778 2 68288 genus 344 1 0 species 104 Cyclobacterium marinum 0 1 434 Cyclobacterium amurskyense species 320787 390846 genus 0 1 867 1 867 0 390884 species Echinicola vietnamensis genus 232244 0 380 1 species 232259 Belliella baltica 1 380 0 246875 genus 257 1 0 Algoriphagus sp. M8-2 species 1727163 0 257 1 2762301 family 331 1 0 869806 genus 0 1 331 1 331 0 species 1006 Marivirga tractuosa Amoebophilaceae 1 family 1501348 1 0 180 3 57 1 0 281119 genus species 281120 Candidatus Amoebophilus asiaticus 1 57 0 273135 genus 0 1 122 no rank 2641185 0 122 1 122 1 0 species 249402 Cardinium endosymbiont of Encarsia pergandiella Cytophagaceae 1 89373 family 6 0 16 7989 genus 978 1 Cytophaga 1 2 754 0 1 753 0 985 species Cytophaga hutchinsonii 1 861914 genus 1 Fibrella 542 2 0 1 541 0 no rank 2620963 Fibrella sp. ES10-3-2-2 1834519 species 0 1 541 1 Spirosoma 9 genus 107 0 3825 6 species 1211326 Spirosoma aerolatum 631 1 0 Spirosoma radiotolerans 1379870 species 0 833 1 0 1 814 Spirosoma sp. HA7 2057025 species 1178516 species Spirosoma montaniterrae 1 771 0 0 767 1 Spirosoma rigui species 564064 319458 genus 1 Leadbetterella 1 652 2 0 0 651 1 Leadbetterella byssophila species 316068 1350 1 0 genus 105 0 1 1350 Runella slithyformis 106 species 2 860 0 1 120831 genus 1 Dyadobacter 1 859 0 94254 species Dyadobacter fermentans 1853234 family 0 1044 2 0 2 1044 Persicobacter 1 genus 59740 6 0 1 1038 2664020 no rank 0 1038 1 Persicobacter sp. JZB09 species 1085624 10116 16 0 family 1853232 15 Hymenobacteraceae 1 1923 4 0 1379908 genus 9 Rufibacter 1 species 512763 Rufibacter tibetensis 793 1 0 2639626 no rank 2 1121 0 583 1 0 species 1379909 Rufibacter sp. DG15C 0 1 538 Rufibacter sp. DG31D species 1379910 1 Hymenobacter 7 89966 genus 0 8 6609 0 4764 5 2615202 no rank 1 636 0 1385663 species Hymenobacter sp. DG25A Hymenobacter sp. PAMC 26628 species 1484118 0 966 1 Hymenobacter sp. DG25B 1385664 species 0 1045 1 1087 1 0 species 1356852 Hymenobacter sp. APR13 1030 1 0 species 1484116 Hymenobacter sp. PAMC 26554 1446467 species Hymenobacter swuensis 1 1085 0 species 1411621 Hymenobacter sedentarius 753 1 0 genus 323449 2 Pontibacter 1 3 1569 0 1 728 0 species 400092 Pontibacter korlensis 0 839 1 Pontibacter akesuensis 388950 species 2 class 1853228 1 Chitinophagia 17 7400 0 16 7398 0 3 order 1853229 1 Chitinophagales 15 7395 0 family 563835 3 Chitinophagaceae 1 1 Arachidicoccus 1 genus 1769012 0 875 2 0 1 874 2636138 no rank 1850526 species Arachidicoccus sp. BS20 1 874 0 0 1114 2 Filimonas 1 649460 genus 1 Filimonas lacunae 477680 species 0 1113 1 Niabella 1 379899 genus 3 0 2077 3 Niabella soli species 446683 0 1082 1 0 992 1 Niabella ginsenosidivorans 1176587 species 1 Flavisolibacter 8 genus 398041 0 2 547 539 1 0 1492898 species Flavisolibacter tropicus Chitinophaga 1 genus 79328 1 0 1884 3 Chitinophaga pinensis 79329 species 0 1 1159 724 1 0 2029983 species Chitinophagaceae bacterium 13 0 2 895 Niastella 1 genus 354354 5 0 1 890 Niastella koreensis species 354356 1937959 class 0 4 980 4 980 0 1 order 1936988 1 Saprospirales 1937961 family 671 1 0 0 671 1 genus 2349 Haliscomenobacter hydrossis species 2350 0 671 1 2 308 0 family 89374 0 308 2 Saprospira 1 genus 1007 2 1 306 0 1008 species Saprospira grandis 113710 134 0 117743 class 27 Flavobacteriia 1 0 133 113683 1 Flavobacteriales 69 order 200644 0 71 2 no rank 313602 0 1 35 genus 1940138 Candidatus Walczuchella monophlebidarum species 1415657 0 35 1 genus 336809 1 36 0 336810 species Candidatus Sulcia muelleri 1 36 0 1333713 family 360 2 0 2 360 0 genus 267986 1 Owenweeksia 1 Owenweeksia hongkongensis 253245 species 0 359 1 1 1755828 family 1 Ichthyobacteriaceae 2 46 0 45 1 0 genus 1755829 242600 species Ichthyobacterium seriolicida 45 1 0 1 family 39782 1 Blattabacteriaceae 9 475 0 34098 genus 0 8 474 Blattabacterium cuenoti 1653831 species 0 1 42 47 1 0 164514 species Blattabacterium punctulatus 2647581 no rank 6 385 0 1 53 0 367806 species Blattabacterium sp. (Blatta orientalis) species 1186051 Blattabacterium sp. (Blaberus giganteus) 1 38 0 0 80 1 Blattabacterium sp. (Blattella germanica) species 624186 Blattabacterium sp. (Mastotermes darwiniensis) 39768 species 0 112 1 33 1 0 species 1316444 Blattabacterium sp. (Nauphoeta cinerea) 1 69 0 367488 species Blattabacterium sp. (Periplaneta americana) 80648 95 0 361 family 49546 1 Flavobacteriaceae 1 292691 genus 1 Gramella 5 1823 0 species 1486245 Gramella flava 457 1 0 Gramella sp. LPB0144 species 1913577 0 414 1 444 1 0 species 411153 Gramella forsetii Gramella sp. SH35 2126553 species 0 1 507 0 5 1228 1 Tenacibaculum 1 104267 genus 0 236 1 Tenacibaculum maritimum 107401 species species 584609 Tenacibaculum jejuense 1 387 0 1850252 species Tenacibaculum todarodis 376 1 0 Tenacibaculum dicentrarchi 669041 species 0 228 1 1 Dokdonia 1 326319 genus 0 4 315 0 109 1 Dokdonia donghaensis 326320 species no rank 2615033 205 2 0 1 99 0 313590 species Dokdonia sp. MED134 0 1 106 Dokdonia sp. 4H-3-7-5 species 983548 1209327 genus 0 621 1 621 1 0 species 1803846 Flavivirga eckloniae 0 432 1 143222 genus 0 1 432 no rank 2633436 Salegentibacter sp. T436 1729720 species 0 1 432 587 1 0 genus 261827 1 587 0 species 1736674 Algibacter alginicilyticus 127 1 0 83612 genus species 57029 Psychroflexus torquis 1 127 0 genus 252356 4 1029 0 no rank 2615042 3 727 0 1644130 species Maribacter sp. 1_2014MBL_MicDiv 1 251 0 0 330 1 Maribacter sp. T28 1836467 species 1 146 0 313603 species Maribacter sp. HTCC2170 302 1 0 1178778 species Maribacter cobaltidurans 5 4260 0 genus 76831 30 Myroides 1 1 596 0 480520 species Myroides profundi 2642485 no rank 1292 2 0 Myroides sp. A21 species 1583100 0 755 1 0 537 1 Myroides sp. ZB35 species 1458492 2342 1 0 76832 species Myroides odoratimimus 1204360 genus 0 1 791 Siansivirga zeaxanthinifaciens 762954 species 0 1 791 2 438 0 genus 252306 1 Robiginitalea 1 0 437 1 Robiginitalea biformata 252307 species 0 605 1 417127 genus 0 605 1 Zunongwangia profunda species 398743 genus 112040 5 Zobellia 1 734 2 0 species 63186 Zobellia galactanivorans 729 1 0 2 104264 genus 1 Cellulophaga 1302 4 0 448 1 0 59600 species Cellulophaga algicola Cellulophaga baltica species 76594 0 1 423 0 1 429 Cellulophaga lytica species 979 genus 291183 0 3 661 1 236 0 species 1486034 Lacinutrix venerupis 2647285 no rank 0 425 2 0 1 233 Lacinutrix sp. Bg11-31 species 2057808 species 983544 Lacinutrix sp. 5H-3-7-4 192 1 0 251 1 0 336276 genus 0 1 251 no rank 2615019 0 1 251 Olleya sp. Bg11-27 2058135 species 1 450 0 178469 genus Arenibacter algicola species 616991 0 450 1 0 49769 15 1 Capnocytophaga 29 genus 1016 species 1848904 Capnocytophaga stomatis 1 642 0 Capnocytophaga ochracea species 1018 0 1 868 no rank 2640652 23657 6 0 0 356 1 Capnocytophaga sp. H2931 1945657 species 0 824 1 Capnocytophaga sp. oral taxon 864 1316593 species 1 944 0 species 1705617 Capnocytophaga sp. oral taxon 323 0 1 696 Capnocytophaga sp. ChDC OS43 209053 species species 1945658 Capnocytophaga sp. H4358 1 375 0 20462 1 0 1316596 species Capnocytophaga sp. oral taxon 878 0 1 1420 Capnocytophaga sputigena species 1019 451 1 0 species 28189 Capnocytophaga cynodegmi 0 1 455 Capnocytophaga haemolytica 45243 species 0 1 21299 Capnocytophaga leadbetteri species 327575 0 1 383 Capnocytophaga gingivalis species 1017 1 565 0 species 28188 Capnocytophaga canimorsus 286104 genus 584 2 0 no rank 2615021 584 2 0 1936080 species Winogradskyella sp. J14-2 364 1 0 species 754409 Winogradskyella sp. PG-2 220 1 0 709 2 0 61432 no rank 255 1 0 species 531844 Flavobacteriaceae bacterium 3519-10 Flavobacteriaceae bacterium UJ101 1150389 species 0 1 454 0 1 117 genus 1176327 2636237 no rank 0 1 117 117 1 0 species 2094025 Aureitalea sp. RR4-38 genus 237 5 Flavobacterium 1 5730 9 0 290 1 0 96345 species Flavobacterium psychrophilum Flavobacterium crassostreae 1763534 species 0 262 1 0 1 379 Flavobacterium indicum species 312277 0 913 1 Flavobacterium gilvum 1492737 species 807 1 0 996 species Flavobacterium columnare 1891 1 0 species 986 Flavobacterium johnsoniae species 55197 Flavobacterium branchiophilum 1 195 0 1306519 species Flavobacterium commune 1 988 0 2 490 0 225842 genus 2 490 0 no rank 2644710 444 1 0 1336794 species Formosa sp. Hel1_33_131 1336795 species Formosa sp. Hel3_A1_48 46 1 0 358023 genus 1 404 0 Lutibacter profundi 1622118 species 0 404 1 1 Aequorivita 2 153265 genus 0 368 2 species 101385 Aequorivita sublithincola 366 1 0 0 788 2 genus 111500 1 370 0 species 111501 Muricauda ruestringensis 418 1 0 species 516051 Muricauda lutaonensis 2700084 genus 1 377 0 0 1 377 Lutibacter sp. LPB0138 species 1850246 0 1 647 393005 genus 2069432 species Tamlana sp. UJ94 647 1 0 0 249 1 1518147 genus species 1790137 Wenyingzhuangia fucanilytica 1 249 0 genus 389486 0 278 1 0 278 1 2648869 no rank 278 1 0 1453352 species Sediminicola sp. YIK13 4 1043 0 genus 363408 369 2 0 2615035 no rank Nonlabens sp. MB-3u-79 species 2058134 0 231 1 1476901 species Nonlabens sp. MIC269 1 138 0 319236 species Nonlabens sediminis 172 1 0 species 328515 Nonlabens dokdonensis 1 502 0 0 262 1 genus 1649495 no rank 2622645 262 1 0 0 262 1 Seonamhaeicola sp. S2-3 1936081 species 0 6 2465 Polaribacter 1 52959 genus 2 no rank 196858 0 3 961 Polaribacter sp. BM10 1529069 species 0 1 405 263 1 0 2058137 species Polaribacter sp. ALD11 313598 species Polaribacter sp. MED152 293 1 0 760 1 0 996801 species Polaribacter reichenbachii 742 1 0 1774273 species Polaribacter vadi genus 216431 353 1 0 353 1 0 species 313588 Croceibacter atlanticus 2762318 family 0 20 30467 7185 10 0 no rank 2782232 0 1053 1 2782228 genus 536441 species Chryseobacterium taklimakanense 1053 1 0 0 9 6132 Chryseobacterium 1 59732 genus 43 species 558152 Chryseobacterium piperi 1 344 0 253 species Chryseobacterium indologenes 1 1337 0 1 967 0 species 1685010 Chryseobacterium glaciei 2593645 no rank 0 3 1947 Chryseobacterium sp. T16E-39 2015076 species 0 723 1 667 1 0 1721091 species Chryseobacterium sp. IHB B 17019 species 878220 Chryseobacterium sp. StRB126 1 557 0 species 1265445 Chryseobacterium camelliae 1 726 0 1324352 species Chryseobacterium gallinarum 768 1 0 0 4394 6 Elizabethkingia 1 308865 genus 21 0 716 1 Elizabethkingia meningoseptica 238 species 0 402 1 Elizabethkingia genomosp. 4 species 1756150 1119 1 0 172045 species Elizabethkingia miricola 1668 1 0 species 1117645 Elizabethkingia anophelis species 1756149 Elizabethkingia genomosp. 3 1 468 0 1 1049 0 genus 34084 Riemerella anatipestifer 34085 species 0 1049 1 299 1 0 genus 1013 species 1014 Weeksella virosa 1 299 0 17540 2 0 16 genus 28250 1 Ornithobacterium 1 17524 0 species 28251 Ornithobacterium rhinotracheale 1853230 family 1547 2 0 Fluviicola 1 genus 332102 40 0 2 1547 Fluviicola taffensis species 191579 0 1 1507 phylum 32066 22 42012 0 1 Fusobacteriia 6 class 203490 0 22 42012 1 Fusobacteriales 3 order 203491 0 42006 21 3163 9 0 1129771 family 6 Leptotrichiaceae 1 447 1 0 34104 genus 0 447 1 Streptobacillus moniliformis 34105 species 1802 5 0 genus 32067 4 Leptotrichia 1 1366 3 0 2633022 no rank 763 1 0 species 712357 Leptotrichia sp. oral taxon 212 0 348 1 Leptotrichia sp. oral taxon 847 species 1785996 Leptotrichia sp. oral taxon 498 712368 species 0 1 255 species 40542 Leptotrichia buccalis 1 432 0 genus 32068 598 1 0 598 1 0 826 species Sebaldella termitidis 168808 genus 0 310 1 310 1 0 187101 species Sneathia amnii 0 38840 11 Fusobacteriaceae 1 203492 family 38 0 613 1 167639 genus 1 613 0 species 167642 Ilyobacter polytropus 0 38189 9 1 Fusobacterium 28 848 genus 426 1 0 species 861 Fusobacterium ulcerans 0 8506 1 Fusobacterium periodonticum species 860 0 1 527 Fusobacterium mortiferum species 850 0 230 1 Fusobacterium gonidiaformans 849 species Fusobacterium varium 856 species 0 1 1037 Fusobacterium nucleatum species 851 0 25868 1 0 1284 1 Fusobacterium hwasookii 1583098 species 1 283 0 859 species Fusobacterium necrophorum 0 1 113 2138240 phylum 0 113 1 class 2138243 2138246 order 113 1 0 113 1 0 family 2138247 113 1 0 genus 68335 35786 species Coprothermobacter proteolyticus 113 1 0 661 4 0 phylum 74152 447830 class 395 2 0 0 2 395 order 1783344 family 1783343 2 395 0 0 395 2 genus 1408194 1408281 species Endomicrobium proavitum 1 255 0 Candidatus Endomicrobium trichonymphae species 1408204 0 140 1 0 1 144 no rank 99260 0 144 1 uncultured Termite group 1 bacterium species 167965 0 1 122 class 641853 122 1 0 order 641854 0 1 122 family 641876 1 122 0 423604 genus Elusimicrobium minutum 423605 species 0 1 122 0 1129 7 200930 phylum 0 7 1129 1 Deferribacteres 2 class 68337 6 1127 0 order 191393 1 Deferribacterales 1 Deferribacteraceae 1 191394 family 1 0 1126 5 0 1 386 genus 545865 Calditerrivibrio nitroreducens species 477976 0 1 386 genus 53572 0 364 1 1 364 0 197162 species Deferribacter desulfuricans 0 1 196 117999 genus 0 196 1 Denitrovibrio acetiphilus species 118000 2351 genus 179 1 0 2352 species Flexistipes sinusarabici 179 1 0 1783257 clade 878341 74 0 4 154 0 134625 phylum Kiritimatiellae 1 1921781 class 5 0 4 154 1 Kiritimatiellales 6 order 1921782 0 3 149 2 143 0 family 1921783 1 Kiritimatiella 1 genus 1921784 0 143 2 Kiritimatiella glycovorans species 1307763 0 142 1 0 873302 20 74201 phylum 871720 6 0 4 class 203494 1 Verrucomicrobiae order 48461 25 Verrucomicrobiales 1 871716 5 0 871691 4 0 2 family 1647988 1 Akkermansiaceae 239934 genus 23 Akkermansia 1 3 871689 0 1 813 0 1679444 species Akkermansia glycaniphila Akkermansia muciniphila 239935 species 0 870853 1 class 1955630 0 2 111 order 717963 0 111 2 717964 family 111 2 0 0 2 111 511745 genus 80 1 0 species 591154 Methylacidiphilum fumariolicum 0 1 31 Methylacidiphilum infernorum species 511746 417295 no rank 0 2 422 202 1 0 1637999 species Verrucomicrobia bacterium IMCC26134 0 220 1 Verrucomicrobia bacterium 2026799 species 134549 class 1 14 0 14 1 0 134550 genus no rank 2648876 14 1 0 Candidatus Xiphinematobacter sp. Idaho Grape species 1704307 0 1 14 1 Opitutae 3 414999 class 0 1035 9 1 Puniceicoccales 4 415001 order 0 267 2 1 263 0 415002 family 442430 genus 263 1 0 Coraliomargarita akajimensis 395922 species 0 263 1 1 Opitutales 18 415000 order 0 765 6 family 134623 1 Opitutaceae 1 5 747 0 0 1 250 genus 1961799 species 1838286 Lacunisphaera limnophila 250 1 0 1 356 0 278955 no rank 1 356 0 794903 species Opitutaceae bacterium TAV5 140 2 0 3 178440 genus 1 Opitutus 0 1 137 Opitutus terrae 107709 species 204428 phylum 0 688 19 19 688 0 1 class 204429 1 Chlamydiia 1963360 order 257 5 0 0 1 28 family 92712 genus 34093 1 28 0 Simkania negevensis 83561 species 0 28 1 0 2 172 family 92713 genus 282132 0 49 1 389348 species Candidatus Protochlamydia naegleriophila 49 1 0 genus 83551 1 123 0 Parachlamydia acanthamoebae species 83552 0 123 1 0 2 57 family 92714 1 genus 71666 1 Waddlia 57 2 0 1 56 0 71667 species Waddlia chondrophila 0 430 13 order 51291 1 809 family 1 Chlamydiaceae 430 13 0 12 429 0 1113537 no rank 429 12 0 genus 810 2 Chlamydia 1 1 17 0 83559 species Chlamydia suis 0 1 7 Chlamydia pneumoniae species 83558 107 1 0 1457153 species Chlamydia gallinacea Chlamydia muridarum 83560 species 0 19 1 species 1457141 Chlamydia avium 1 22 0 1 58 0 species 85991 Chlamydia pecorum Chlamydia abortus species 83555 0 1 20 Chlamydia psittaci species 83554 0 107 1 species 83557 Chlamydia caviae 28 1 0 19 1 0 species 813 Chlamydia trachomatis species 83556 Chlamydia felis 23 1 0 256845 phylum 1013 3 0 0 3 1013 Lentisphaeria 1 class 1313211 17 0 2 996 1 Victivallales 250 order 278082 1674876 no rank 746 1 0 species 2094242 Victivallales bacterium CCUG 44730 746 1 0 3184 28 0 203682 phylum Phycisphaerae 1 class 666505 1 0 630 5 order 666506 0 173 2 0 173 2 1 Phycisphaeraceae 1 family 666507 0 1 172 666508 genus Phycisphaera mikurensis species 547188 0 172 1 2483366 order 456 2 0 0 2 456 2483367 family 2483368 genus 2 456 0 1 290 0 species 1940790 Phycisphaerae bacterium L21-RPul-D3 1941349 species Phycisphaerae bacterium ST-PulAB-D4 166 1 0 0 2203 22 Planctomycetia 1 class 203683 7 2691355 order 0 128 3 1 Gemmataceae 1 1914233 family 0 3 128 2 127 0 genus 113 1 Gemmata 1 0 1 126 no rank 2622970 Gemmata sp. SH-PL17 species 1630693 0 1 126 2691356 order 0 7 470 1 Isosphaeraceae 1 1763524 family 0 7 470 0 180 2 Isosphaera 1 127 genus 2 species 128 Isosphaera pallida 1 178 0 1 Paludisphaera 1 1763521 genus 0 2 146 Paludisphaera borealis species 1387353 0 1 145 2 143 0 genus 466152 2 Singulisphaera 1 0 1 141 Singulisphaera acidiphila species 466153 order 112 22 Planctomycetales 1 8 1306 0 0 1284 7 1 Planctomycetaceae 3 126 family 0 1 147 genus 1649490 147 1 0 119 species Rubinisphaera brasiliensis 3 118 genus 1 Planctomyces 3 613 0 0 2 610 no rank 2648843 1 456 0 species 1636152 Planctomyces sp. SH-PL62 0 1 154 Planctomyces sp. SH-PL14 species 1632864 1 232 0 genus 1936111 232 1 0 species 1891926 Fuerstia marisgermanicae genus 1649480 0 1 289 289 1 0 species 120 Planctopirus limnophila 2691354 order 0 292 3 2691358 family 1 108 0 108 1 0 genus 1676125 0 1 108 Thermogutta terrifontis 1331910 species 2691357 family 0 184 2 78 1 0 265488 genus 1 78 0 species 265606 Rhodopirellula baltica genus 123 1 106 0 125 species Pirellula staleyi 106 1 0 1 351 0 2517206 class order 1127829 0 351 1 family 1127830 351 1 0 genus 380738 0 1 351 0 1 351 Candidatus Kuenenia stuttgartiensis 174633 species 0 1205083 1870 Proteobacteria 1 1224 phylum 93 0 3 362 1 Zetaproteobacteria 1 class 580370 580371 order 2 361 0 0 361 2 580372 family 377315 genus 0 2 361 Mariprofundus ferrinatatus 1921087 species 0 1 204 Mariprofundus aestuarium 1921086 species 0 157 1 Oligoflexia 1 1553900 class 11 0 9 1125 5 855 0 213481 order 5 Bdellovibrionales 1 6 family 213483 1 Bdellovibrionaceae 850 4 0 3 844 0 genus 958 5 Bdellovibrio 1 1 741 0 959 species Bdellovibrio bacteriovorus 453816 species Bdellovibrio exovorus 1 98 0 0 259 3 order 2024979 1652132 family 0 2 118 0 118 2 1 Halobacteriovorax 3 genus 1652133 0 115 1 Halobacteriovorax marinus 97084 species 263369 family 0 141 1 146784 genus 141 1 0 0 1 141 Bacteriovorax stolpii 960 species 502 75628 0 237 28211 class 1 Alphaproteobacteria order 1191478 2 147 0 family 1191479 0 2 147 genus 162171 1 Magnetococcus 1 2 147 0 0 1 146 Magnetococcus marinus species 1124597 1 Sphingomonadales 102 204457 order 0 82 13002 59 10187 0 115 41297 family 1 Sphingomonadaceae 0 2 135 Citromicrobium 1 genus 72173 2 2630544 no rank 0 133 1 133 1 0 species 1634516 Citromicrobium sp. JL477 15 3472 0 55 genus 13687 1 Sphingomonas 1206 2 0 583 species 160791 1 Sphingomonas wittichii 0 1 623 Sphingomonas sp. DC-6 strain 1283312 0 166 1 Sphingomonas panacis species 1560345 196159 no rank 0 1195 6 109 1 0 species 1938607 Sphingomonas sp. LM7 Sphingomonas sp. KC8 species 1030157 0 1 231 1 380 0 species 745310 Sphingomonas sp. MM-1 Sphingomonas sp. NIC1 species 1961362 0 1 107 species 1327635 Sphingomonas sp. Cra20 157 1 0 Sphingomonas sp. LK11 species 1390395 0 1 211 0 1 297 Sphingomonas hengshuiensis species 1609977 122 1 0 1549858 species Sphingomonas taxi Sphingomonas sanxanigenens species 397260 0 184 1 0 106 1 Sphingomonas koreensis species 93064 Sphingomonas melonis 152682 species 0 1 141 genus 2709685 0 111 1 266812 species Sphingorhabdus flavimaris 1 111 0 Sphingobium 1 165695 genus 56 0 15 3299 Sphingobium indicum species 332055 0 1 384 0 1071 6 2611147 no rank 484429 species Sphingobium sp. YBL2 1 254 0 Sphingobium sp. EP60837 species 1855519 0 186 1 0 124 1 Sphingobium sp. RAC03 species 1843368 Sphingobium sp. SYK-6 species 627192 0 1 141 Sphingobium sp. MI1205 407020 species 0 1 198 0 168 1 Sphingobium sp. TKS 1315974 species 13690 species Sphingobium yanoikuyae 527 1 0 1 224 0 species 332056 Sphingobium japonicum 1 186 0 species 1332080 Sphingobium baderi 245 1 0 76947 species Sphingobium herbicidovorans Sphingobium cloacae species 120107 0 1 196 1 110 0 1673076 species Sphingobium hydrophobicum 1 300 0 species 46429 Sphingobium chlorophenolicum 150203 genus 1 Blastomonas 1 2 129 0 no rank 2626550 0 128 1 128 1 0 1842535 species Blastomonas sp. RAC04 0 1171 10 Sphingopyxis 1 genus 165697 12 Sphingopyxis terrae species 33052 0 1 85 498 4 0 2614943 no rank 0 101 1 Sphingopyxis sp. MG species 1866325 1357916 species Sphingopyxis sp. QXT-31 88 1 0 1913578 species Sphingopyxis sp. LPB0140 198 1 0 Sphingopyxis sp. 113P3 292913 species 0 1 111 1 127 0 1515612 species Sphingopyxis fribergensis Sphingopyxis granuli 267128 species 0 1 119 Sphingopyxis alaskensis species 117207 0 94 1 1 236 0 33050 species Sphingopyxis macrogoltabida 0 5 752 1 Novosphingobium 17 165696 genus 0 1 246 Novosphingobium aromaticivorans species 48935 Novosphingobium pentaromativorans 205844 species 0 186 1 Novosphingobium resinovorum 158500 species 0 159 1 0 1 144 2644732 no rank 0 1 144 Novosphingobium sp. PP1Y species 702113 0 1 165 genus 2685927 Sphingomonas sp. JJ-A5 species 1921510 0 1 165 0 287 3 1 Sphingorhabdus 5 1434046 genus 0 2 282 no rank 2614947 0 145 1 Sphingorhabdus sp. M41 1806885 species 0 1 137 Sphingorhabdus sp. YGSMI21 2077182 species Zymomonas 1 541 genus 57 0 2 377 species 542 Zymomonas mobilis 320 1 0 0 2 174 Rhizorhabdus 1 1649486 genus 1 0 173 1 Rhizorhabdus dicambivorans 1850238 species 1 Erythrobacteraceae 38 family 335929 0 22 2713 0 243 1 genus 2800685 1 243 0 species 543877 Altererythrobacter marensis Croceicoccus 1 genus 1295327 9 0 3 235 1 120 0 species 1348774 Croceicoccus naphthovorans 0 1 106 Croceicoccus marinus 450378 species 6 519 0 no rank 2800788 1 Porphyrobacter 6 genus 1111 0 3 206 2683265 no rank 2 200 0 1 107 0 1896196 species Porphyrobacter sp. LM 6 0 1 93 Porphyrobacter HT-58-2 2023229 species 3 313 0 genus 1041 8 Erythrobacter 1 1 115 0 1112 species Porphyrobacter neustonensis 39960 species Erythrobacter litoralis 1 190 0 723 4 0 14 361177 genus 1 Altererythrobacter 242 1 0 361183 species Altererythrobacter epoxidivorans 476157 species Altererythrobacter ishigakiensis 1 171 0 296 1 0 species 1267766 Altererythrobacter atlanticus genus 2800681 235 2 0 Erythrobacter gangjinensis species 502682 0 184 1 1648404 species Erythrobacter atlanticus 51 1 0 genus 2800682 235 1 0 0 1 235 Altererythrobacter namhicola species 645517 genus 1855416 0 2 314 Erythrobacter seohaensis 266951 species 0 200 1 Erythrobacter flavus species 192812 0 114 1 0 171 2 2800686 genus 94 1 0 1982042 species Altererythrobacter mangrovi 0 1 77 Altererythrobacter dongtanensis species 692370 0 7 607 no rank 82117 2 213485 genus 1 Micavibrio 2 144 0 1 142 0 species 349221 Micavibrio aeruginosavorus 10 1632780 genus 1 Phreatobacter 199 2 0 0 189 1 Phreatobacter sp. S-12 species 1868589 0 1 70 62654 clade 1 70 0 genus 767891 species 767892 Candidatus Puniceispirillum marinum 70 1 0 0 194 2 1 Polymorphum 10 genus 991903 0 1 184 Polymorphum gilvum 991904 species 0 7 431 Pelagibacterales 1 54526 order 1 0 4 366 1655514 family no rank 1655516 2 197 0 species 859653 alpha proteobacterium HIMB5 88 1 0 species 744985 alpha proteobacterium HIMB59 109 1 0 0 2 169 198251 genus 42 1 0 2647897 no rank 0 1 42 Candidatus Pelagibacter sp. IMCC9063 1002672 species 127 1 0 198252 species Candidatus Pelagibacter ubique 0 64 2 Candidatus Fonsibacter 1 2045213 genus 1 1 63 0 species 1925548 Candidatus Fonsibacter ubiquis 1 Caulobacterales 10 204458 order 0 19 2567 18 2557 0 76892 family 40 Caulobacteraceae 1 0 1 332 76890 genus Asticcacaulis excentricus species 78587 0 332 1 0 788 7 Brevundimonas 1 genus 41275 55 0 1 137 Brevundimonas vesicularis species 41276 Brevundimonas subvibrioides species 74313 0 1 109 0 1 132 Brevundimonas naejangsanensis species 588932 355 3 0 2622653 no rank 71 1 0 1938605 species Brevundimonas sp. LM2 Brevundimonas sp. DS20 species 1532555 0 127 1 Brevundimonas sp. GW460-12-10-14-LB2 1827469 species 0 1 157 6 1142 0 genus 75 13 Caulobacter 1 Caulobacter mirabilis 69666 species 0 142 1 Caulobacter henricii 69395 species 0 172 1 1 174 0 species 88688 Caulobacter segnis species 155892 Caulobacter vibrioides 360 1 0 1 281 0 no rank 2648921 Caulobacter sp. K31 366602 species 0 1 281 1 72 0 81440 no rank 1759059 species Caulobacteraceae bacterium OTSz_A_272 72 1 0 1 Phenylobacterium 6 genus 20 0 183 2 Phenylobacterium zucineum 284016 species 0 177 1 11212 61 0 order 204441 86 Rhodospirillales 1 32 5322 0 433 family 77 Acetobacteraceae 1 419 3 0 9 522 genus 1 Acidiphilium Acidiphilium multivorum 62140 species 0 231 1 0 179 1 Acidiphilium cryptum 524 species Acetobacter 1 434 genus 26 0 8 1798 0 1 161 Acetobacter tropicalis species 104102 438 species Acetobacter pasteurianus 705 1 0 446692 species Acetobacter senegalensis 1 141 0 0 153 1 Acetobacter oryzifermentans species 1633874 65959 species Acetobacter pomorum 193 1 0 151157 subgenus 0 1 265 265 1 0 435 species Acetobacter aceti 1076596 species Acetobacter persici 1 154 0 genus 1602345 1 Parasaccharibacter 1 100 2 0 1510841 species Parasaccharibacter apium 1 99 0 0 473 3 Roseomonas 1 genus 125216 5 257708 species Roseomonas gilardii 1 228 0 240 1 0 2617492 no rank 2018065 species Roseomonas sp. FDAARGOS_362 240 1 0 320496 genus 0 109 1 species 320497 Neoasaia chiangmaiensis 109 1 0 2 genus 1434011 1 Komagataeibacter 5 694 0 107 1 0 265960 species Komagataeibacter nataicola Komagataeibacter xylinus species 28448 0 295 1 1 193 0 33995 species Komagataeibacter europaeus 1 97 0 species 1177712 Komagataeibacter medellinensis genus 91914 101 1 0 0 101 1 Asaia bogorensis 91915 species 3 89583 genus 1 Gluconacetobacter 240 2 0 Gluconacetobacter diazotrophicus 33996 species 0 237 1 3 489 0 genus 441 1 Gluconobacter 1 0 1 358 Gluconobacter oxydans 442 species Gluconobacter albidus species 318683 0 130 1 1 Granulibacter 5 364409 genus 0 581 2 364410 species Granulibacter bethesdensis 1 576 0 1 241 0 153497 genus 0 1 241 Kozakia baliensis 153496 species 0 28 5804 1 Rhodospirillaceae 85 41295 family 1612157 genus 1 140 0 0 1 140 Pararhodospirillum photometricum 1084 species 3 516 0 2 168934 genus 1 Thalassospira 1 275 0 species 2048283 Thalassospira sp. CSC3H3 species 220697 Thalassospira xiamenensis 1 239 0 171436 genus 14 Tistrella 1 181 2 0 Tistrella mobilis species 171437 0 167 1 471 2 0 genus 1543705 3 Nitrospirillum 1 468 1 0 species 28077 Nitrospirillum amazonense 1 Haematospirillum 1 genus 1804663 0 93 2 0 1 92 Haematospirillum jordaniae 1549855 species 2 403 0 genus 1543704 2 Niveispirillum 1 0 401 1 Niveispirillum cyanobacteriorum species 1612173 1 Rhodospirillum 17 genus 1081 0 396 3 Rhodospirillum rubrum species 1085 0 1 178 34018 species Rhodospirillum centenum 1 201 0 genus 1263978 109 1 0 109 1 0 species 1263979 Candidatus Endolissoclinum faulkneri 0 1 191 1182780 genus no rank 2685734 191 1 0 species 1288970 Magnetospira sp. QH-2 1 191 0 1 Magnetospirillum 32 13134 genus 0 5 1584 Magnetospirillum gryphiswaldense 55518 species 0 614 1 2617991 no rank 2 727 0 Magnetospirillum sp. XM-1 species 1663591 0 1 316 Magnetospirillum sp. ME-1 1639348 species 0 411 1 0 211 1 Magnetospirillum magneticum species 84159 5 1635 0 191 genus 74 Azospirillum 1 species 192 Azospirillum brasilense 441 1 0 193 species Azospirillum lipoferum 1 637 0 528244 species Azospirillum thiophilum 1 262 0 species 1226968 Azospirillum humicireducens 221 1 0 1 Rhodobacterales 118 order 204455 0 72 12704 family 31989 232 Rhodobacteraceae 1 12586 71 0 0 4 532 1 Rhodovulum 9 34008 genus 1 291 0 35806 species Rhodovulum sulfidophilum no rank 2631432 0 232 2 308754 species Rhodovulum sp. MB263 95 1 0 Rhodovulum sp. P5 species 1564506 0 1 137 97050 genus 2 443 0 no rank 2625375 183 1 0 Ruegeria sp. TM1040 292414 species 0 1 183 Ruegeria pomeroyi species 89184 0 260 1 1 Confluentimicrobium 2 1609958 genus 0 2 490 2643318 no rank 488 1 0 0 1 488 Confluentimicrobium sp. EMB200-NS6 species 1609966 1649279 genus 0 1 241 241 1 0 379347 species Ruegeria mobilis genus 92944 0 2 224 115 1 0 92947 species Ketogulonicigenium robustum 1 109 0 species 92945 Ketogulonicigenium vulgare genus 285107 0 80 1 species 1915078 Thioclava nitratireducens 1 80 0 203 2 0 119541 genus 2 Rhodobaca 1 201 1 0 species 441209 Rhodobaca barguzinensis 549 5 0 genus 875170 5 Celeribacter 1 Celeribacter marinus 1397108 species 0 1 77 1411902 species Celeribacter manganoxidans 187 1 0 131 1 0 species 1208324 Celeribacter indicus 1758178 species Celeribacter ethanolicus 1 149 0 0 1 286 299261 genus 0 1 286 Tateyamaria omphalii 299262 species 0 123 1 genus 309512 species 215813 Dinoroseobacter shibae 1 123 0 0 170 1 genus 367771 0 1 170 Marinovum algicola species 42444 0 365 2 genus 60136 0 133 1 Sulfitobacter pseudonitzschiae 1402135 species 0 1 232 196795 no rank 1917485 species Sulfitobacter sp. AM1-D1 232 1 0 0 369 1 genus 227873 0 1 369 Pannonibacter phragmitetus 121719 species 0 269 1 360528 genus Pelagibaca abyssi species 1250539 0 269 1 genus 2433 0 2 256 0 142 1 Roseobacter denitrificans 2434 species 114 1 0 42443 species Roseobacter litoralis 0 1 194 genus 74032 Antarctobacter heliothermus species 74033 0 194 1 genus 74030 0 1 133 species 215743 Roseovarius mucosus 133 1 0 316 3 0 genus 53945 Octadecabacter antarcticus 1217908 species 0 1 106 138 1 0 species 53946 Octadecabacter arcticus 72 1 0 1458307 species Octadecabacter temperatus 2 529 0 genus 263377 0 1 240 no rank 2640570 0 1 240 Yangia sp. CCB-MM3 1792508 species Thiobacimonas profunda 1229727 species 0 289 1 1097466 genus 2 Defluviimonas 1 2 216 0 214 1 0 species 1335048 Defluviimonas alba 1 64 0 159345 genus Roseibacterium elongatum species 159346 0 1 64 genus 58842 212 1 0 2624628 no rank 0 212 1 species 2009329 Sagittula sp. P11 1 212 0 Paracoccus 1 265 genus 7 0 9 1952 94 1 0 2065379 species Paracoccus sp. CBA4604 77 1 0 246570 no rank Paracoccus sp. BM15 species 1529068 0 77 1 Paracoccus denitrificans species 266 0 525 1 Paracoccus zhejiangensis 1077935 species 0 290 1 0 150 1 Paracoccus aminovorans species 34004 1945662 species Paracoccus contaminans 1 336 0 34003 species Paracoccus aminophilus 214 1 0 259 1 0 species 147645 Paracoccus yeei 1 Labrenzia 4 478070 genus 0 4 780 0 542 2 no rank 2648686 0 1 300 Labrenzia sp. VG12 species 2021862 242 1 0 1674922 species Labrenzia sp. CP4 0 234 1 Labrenzia aggregata species 187304 302485 genus 24 Phaeobacter 1 1323 5 0 0 1 317 Phaeobacter gallaeciensis species 60890 Phaeobacter inhibens 221822 species 0 467 1 1 101 0 species 1844006 Phaeobacter porticola Phaeobacter piscinae species 1580596 0 414 1 0 113 1 genus 188905 1 113 0 no rank 2645469 0 1 113 Jannaschia sp. CCS1 290400 species 849 5 0 1060 genus 9 Rhodobacter 1 117 1 0 species 1061 Rhodobacter capsulatus species 1063 Rhodobacter sphaeroides 1 382 0 2 341 0 196779 no rank 2033869 species Rhodobacter sp. CZR27 203 1 0 138 1 0 1850250 species Rhodobacter sp. LPB0142 1759396 genus 0 1 125 no rank 2622455 1 125 0 0 125 1 Marivivens sp. JLT3646 1920883 species genus 1284657 0 1 105 105 1 0 species 1284658 Planktomarina temperata 0 235 1 2211641 genus species 245188 Loktanella vestfoldensis 235 1 0 62 1 0 1579315 genus 0 1 62 Halocynthiibacter arcticus species 1579316 0 274 2 58840 no rank 0 166 1 Rhodobacteraceae bacterium species 1904441 species 2033435 Rhodobacteraceae bacterium QY30 108 1 0 1 272 0 genus 191028 Leisingera methylohalidivorans species 133924 0 1 272 1 Rhizobiales 251 order 356 0 191 31343 1 Bradyrhizobiaceae 126 41294 family 0 4344 24 2094 11 0 374 genus 91 Bradyrhizobium 1 Bradyrhizobium icense 1274631 species 0 1 172 0 361 1 Bradyrhizobium japonicum species 375 0 1 253 Bradyrhizobium diazoefficiens species 1355477 Bradyrhizobium oligotrophicum 44255 species 0 1 244 973 6 0 no rank 2631580 Bradyrhizobium sp. BTAi1 288000 species 0 183 1 species 1223566 Bradyrhizobium sp. CCGE-LA001 1 134 0 231 1 0 species 376 Bradyrhizobium sp. Bradyrhizobium sp. ORS 278 114615 species 0 1 110 0 126 1 Bradyrhizobium sp. SK17 species 2057741 189 1 0 115808 species Bradyrhizobium sp. ORS 285 Rhodopseudomonas 1 genus 1073 21 0 2 1021 Rhodopseudomonas palustris species 1076 0 1 1000 0 2 169 genus 911 1 61 0 species 912 Nitrobacter hamburgensis 0 108 1 Nitrobacter winogradskyi 913 species 1649510 genus 76 1 0 0 1 76 Variibacter gotjawalensis 1333996 species 1 Oligotropha 1 40136 genus 0 126 2 0 125 1 Oligotropha carboxidovorans species 40137 13 85413 genus 1 Bosea 5 732 0 0 469 3 no rank 2653178 0 145 1 Bosea sp. AS-1 species 2015316 Bosea sp. RAC05 1842539 species 0 216 1 0 1 108 Bosea sp. PAMC 26642 species 1792307 Bosea vaviloviae species 1526658 0 250 1 868 6 0 255475 family 2 Aurantimonadaceae 1 175 1 0 414371 genus 2615206 no rank 0 1 175 1349819 species Aureimonas sp. AU20 1 175 0 4 691 0 293088 genus 19 Martelella 1 0 1 197 2629616 no rank 197 1 0 686597 species Martelella sp. AD-3 species 293089 Martelella mediterranea 336 1 0 0 139 1 Martelella endophytica 1486262 species 11277 48 0 family 82115 96 Rhizobiaceae 1 2 409 0 19 323620 genus 1 Shinella 2643062 no rank 1 390 0 879274 species Shinella sp. HZN7 390 1 0 10 2150 0 227292 no rank 460 3 0 2 genus 106591 1 Ensifer 0 287 1 Ensifer adhaerens species 106592 1 171 0 716925 species Ensifer sojae 1690 7 0 38 genus 28105 1 Sinorhizobium 0 400 2 no rank 2613772 0 226 1 Sinorhizobium sp. RAC02 species 1842534 1 174 0 794846 species Sinorhizobium sp. CCBAU 05631 0 192 1 Sinorhizobium americanum species 194963 1 518 0 species 382 Sinorhizobium meliloti 211 1 0 110321 species Sinorhizobium medicae 0 1 331 663276 species group Sinorhizobium fredii species 380 0 1 331 8390 30 0 no rank 227290 5947 21 0 genus 379 398 Rhizobium 1 0 1 210 Rhizobium tropici 398 species 0 240 1 Rhizobium gallicum species 56730 15 2644 0 2613769 no rank Rhizobium sp. IE4771 species 1301032 0 1 141 1703969 species Rhizobium sp. N324 1 209 0 Rhizobium sp. Y9 species 1914541 0 1 218 1 150 0 2020312 species Rhizobium sp. CIAT894 Rhizobium sp. 10195 2028343 species 0 1 267 0 1 139 Rhizobium sp. NT-26 1125847 species 0 1 342 Rhizobium sp. ACO-34A 1571470 species species 1981173 Rhizobium sp. NXC14 1 158 0 0 243 1 Rhizobium sp. IRBG74 species 424182 0 180 1 Rhizobium sp. Kim5 2020311 species species 2020313 Rhizobium sp. TAL182 1 19 0 Rhizobium sp. N731 1703966 species 0 50 1 1869170 species Rhizobium sp. S41 1 197 0 1703961 species Rhizobium sp. N1314 1 50 0 0 281 1 Rhizobium sp. NXC24 2048897 species 396 species Rhizobium phaseoli 585 1 0 species 29449 Rhizobium etli 1 594 0 0 1276 1 Rhizobium leguminosarum species 384 1 Agrobacterium 21 357 genus 0 1958 7 species group 1183400 2 1049 0 0 1 765 Agrobacterium tumefaciens species 358 1 284 0 1176649 species Agrobacterium fabrum species 373 Agrobacterium vitis 1 280 0 2632611 no rank 0 2 364 1842536 species Agrobacterium sp. RAC06 147 1 0 Agrobacterium sp. H13-3 861208 species 0 217 1 359 species Agrobacterium rhizogenes 244 1 0 genus 1525371 5 Neorhizobium 1 2 485 0 480 1 0 species 399 Neorhizobium galegae 232 5 0 34019 genus 1 47 0 309868 species Candidatus Liberibacter americanus species 34020 Candidatus Liberibacter africanus 1 47 0 0 58 1 Candidatus Liberibacter solanacearum species 556287 Liberibacter crescens 1273132 species 0 43 1 species 34021 Candidatus Liberibacter asiaticus 37 1 0 0 4 870 119042 no rank 0 208 2 1 Pseudorhodoplanes 10 genus 1734920 0 1 198 Pseudorhodoplanes sinuspersici species 1235591 1484898 genus 0 295 1 1384459 species Methyloceanibacter caenitepidi 295 1 0 0 367 1 genus 1572860 367 1 0 species 1482074 Hartmannibacter diazotrophicus 0 288 4 1 Chelatococcaceae 9 2036754 family 0 279 3 Chelatococcus 1 28209 genus 6 89 1 0 444444 species Chelatococcus daeguensis 1 184 0 no rank 2638111 Chelatococcus sp. CO-6 species 1702325 0 184 1 family 119043 0 111 2 2 111 0 13 256616 genus 1 Parvibaculum species 256618 Parvibaculum lavamentivorans 98 1 0 family 31993 5 458 0 0 2 158 Methylosinus 1 genus 425 1 0 1 157 Methylosinus trichosporium species 426 1 Methylocystis 12 genus 133 0 3 300 2625913 no rank 199 1 0 species 187303 Methylocystis sp. SC2 1 199 0 89 1 0 655015 species Methylocystis bryophila 2458 15 0 119045 family 6 Methylobacteriaceae 1 9 1227 0 genus 407 76 Methylobacterium 1 species 418223 Methylobacterium phyllosphaerae 1 137 0 species 31998 Methylobacterium radiotolerans 118 1 0 114616 species Methylobacterium nodulans 1 174 0 116 1 0 334852 species Methylobacterium oryzae 270351 species Methylobacterium aquaticum 157 1 0 0 449 3 no rank 2615210 0 210 1 Methylobacterium sp. 4-46 426117 species 1 138 0 925818 species Methylobacterium sp. AMS5 101 1 0 species 1479019 Methylobacterium sp. C1 2282523 genus 996 3 0 29429 species Methylobacterium zatmanii 148 1 0 species 408 Methylobacterium extorquens 1 635 0 Methylobacterium populi species 223967 0 213 1 229 2 0 genus 186650 2 Microvirga 1 Microvirga ossetica species 1882682 0 227 1 0 20 2015 Brucellaceae 1 118882 family 9 0 14 906 1 Brucella 330 genus 234 0 42 1 Brucella pinnipedialis 120576 species 0 27 1 Brucella microti 444163 species 236 species Brucella ovis 1 15 0 1 30 0 235 species Brucella abortus 0 1 55 Brucella canis 36855 species 0 34 1 Brucella suis 29461 species 4 213 0 2632610 no rank species 1885919 Brucella sp. 141012304 1 59 0 0 1 74 Brucella sp. 09RB8471 species 1149952 1844051 species Brucella sp. 09RB8910 46 1 0 Brucella sp. 2002734562 species 1891098 0 1 34 species 120577 Brucella ceti 1 40 0 Brucella melitensis 29459 species 0 1 45 Brucella vulpis species 981386 0 75 1 0 1100 5 1 Ochrobactrum 30 528 genus 301 1 0 529 species Ochrobactrum anthropi 0 1 297 Ochrobactrum sp. A44 species 271865 227 1 0 419475 species Ochrobactrum pseudogrignonense 1 245 0 571256 species Ochrobactrum pituitosum 0 4 224 Beijerinckiaceae 1 family 45404 2 0 97 2 Methylocella 1 120652 genus 1 Methylocella silvestris 199596 species 0 1 96 genus 532 0 125 1 0 125 1 Beijerinckia indica 533 species 45401 family 12 Hyphomicrobiaceae 1 2355 16 0 genus 1082930 1 168 0 168 1 0 species 531813 Pelagibacterium halotolerans 0 1 254 1068 genus 1 254 0 species 1069 Rhodomicrobium vannielii 0 69 1 119044 genus 0 69 1 Candidatus Filomicrobium marinum 1608628 species 5 genus 81 1 Hyphomicrobium 4 586 0 0 305 1 Hyphomicrobium denitrificans species 53399 0 1 163 2619925 no rank 163 1 0 species 717785 Hyphomicrobium sp. MC1 1 113 0 species 1427356 Hyphomicrobium nitrativorans 2 211 0 6 59282 genus 1 Blastochloris Blastochloris viridis 1079 species 0 1 205 2 340 0 29407 genus 14 Rhodoplanes 1 1 326 0 2619116 no rank Rhodoplanes sp. Z2-YC6860 species 674703 0 326 1 715 4 0 25 genus 46913 1 Devosia 690 3 0 no rank 196773 Devosia sp. I507 species 2083786 0 1 227 0 232 1 Devosia sp. H5989 1643450 species 231 1 0 species 1736675 Devosia sp. A16 2020 18 0 family 772 1 Bartonellaceae 1 2019 17 0 773 genus 74 Bartonella 1 388640 species Bartonella australis 1 54 0 1318743 species Bartonella ancashensis 61 1 0 0 107 1 Bartonella grahamii species 33045 0 89 1 Bartonella bacilliformis species 774 1686310 species Bartonella apis 637 1 0 no rank 2645622 337 6 0 species 1933912 Bartonella sp. Raccoon60 1 40 0 Bartonella sp. JB15 1933906 species 0 63 1 1933910 species Bartonella sp. A1379B 1 46 0 515256 species Bartonella sp. 1-1C 42 1 0 1933907 species Bartonella sp. JB63 63 1 0 83 1 0 species 1933904 Bartonella sp. WD16.2 Bartonella tribocorum 85701 species 0 242 1 Bartonella henselae 38323 species 0 1 70 Bartonella vinsonii species 33047 0 1 58 56426 species Bartonella clarridgeiae 83 1 0 Bartonella quintana 803 species 0 1 207 17 3029 0 22 family 69277 1 Phyllobacteriaceae 0 258 2 Chelativorans 1 genus 449972 1 no rank 2643807 257 1 0 1 257 0 266779 species Chelativorans sp. BNC1 122 1 0 genus 245876 species 472175 Nitratireductor basaltis 122 1 0 0 1968 9 1 Mesorhizobium 42 genus 68287 Mesorhizobium loti 381 species 0 242 1 307 1 0 species 593909 Mesorhizobium opportunistum Mesorhizobium amorphae 71433 species 0 1 225 0 236 1 Mesorhizobium japonicum species 2066070 species 39645 Mesorhizobium ciceri 1 456 0 no rank 325217 1 225 0 species 278153 Mesorhizobium sp. WSM1497 225 1 0 0 88 1 Mesorhizobium australicum 536018 species Mesorhizobium sp. B7 species 1670800 0 147 1 0 1 216 genus 28100 216 1 0 species 1867719 Phyllobacterium zundukense 274591 genus 207 1 0 207 1 0 no rank 2614931 species 1620421 Hoeflea sp. IMCC20628 1 207 0 31988 genus 1 Aminobacter 1 236 2 0 0 235 1 Aminobacter aminovorans species 83263 family 335928 11 Xanthobacteraceae 1 7 775 0 2 308 0 279 genus 9 Xanthobacter 1 1 299 0 280 species Xanthobacter autotrophicus genus 6 21 Azorhizobium 1 2 263 0 0 242 1 Azorhizobium caulinodans 7 species Starkeya 1 genus 152053 5 0 193 2 0 1 188 Starkeya novella species 921 order 2800059 278 2 0 2800061 family 278 2 0 Maricaulis 1 genus 74317 1 0 278 2 0 277 1 Maricaulis maris species 74318 460 5 0 order 2800060 460 5 0 9 69657 family 1 Hyphomonadaceae 3 369 0 85 genus 3 Hyphomonas 1 0 1 189 no rank 2630699 0 189 1 Hyphomonas sp. Mor2 species 1906738 1 177 0 81032 species Hyphomonas neptunium 2723 genus 0 1 82 2724 species Hirschia baltica 82 1 0 0 5 358 order 1921002 1 50 0 family 2100208 0 1 50 genus 1509243 species 1509244 Candidatus Nucleicultrix amoebiphila 1 50 0 0 2 225 1 Holosporaceae 1 44746 family 224 1 0 no rank 204454 1 224 0 species 86106 endosymbiont of Acanthamoeba sp. UWC8 2 83 0 family 1777752 1 Candidatus Paracaedibacteraceae 1 1521255 genus 0 1 82 82 1 0 species 91604 Candidatus Paracaedibacter acanthamoebae 0 42 2 order 255473 1 Parvularculaceae 1 family 255474 0 2 42 41 1 0 genus 208215 41 1 0 species 208216 Parvularcula bermudensis Rickettsiales 1 766 order 8 0 2240 46 1699067 no rank 0 1 158 158 1 0 species 1528098 Rickettsiales bacterium Ac37b 942 family 0 18 834 98 3 0 genus 33993 0 1 9 Neorickettsia helminthoeca 33994 species species 950 Neorickettsia risticii 59 1 0 species 951 Neorickettsia sennetsu 30 1 0 genus 943 0 5 388 95 1 0 no rank 106181 95 1 0 species 391036 Ehrlichia sp. HF 106178 species group 0 293 4 126 1 0 species 779 Ehrlichia ruminantium 0 1 73 Ehrlichia canis 944 species 0 65 1 Ehrlichia chaffeensis 945 species 35795 species Ehrlichia muris 29 1 0 273 7 0 tribe 952 genus 953 0 273 7 0 273 7 no rank 2640676 0 1 18 Wolbachia endosymbiont of Onchocerca ochengi species 100901 Wolbachia endosymbiont of Brugia malayi species 80849 0 1 23 163164 species Wolbachia endosymbiont of Drosophila melanogaster 1 25 0 0 1 90 Wolbachia endosymbiont of Drosophila simulans 77038 species 0 16 1 Wolbachia endosymbiont of Onchocerca volvulus species 77551 1 44 0 species 246273 Wolbachia endosymbiont of Cimex lectularius species 66084 Wolbachia sp. wRi 1 57 0 genus 768 0 75 3 species 770 Anaplasma marginale 1 8 0 1 9 0 769 species Anaplasma centrale species group 106179 58 1 0 0 58 1 Anaplasma phagocytophilum 948 species family 1328881 68 1 0 411566 genus 68 1 0 0 1 68 Candidatus Midichloria mitochondrii species 234827 0 25 1172 family 775 24 1097 0 tribe 33988 0 1017 23 Rickettsia 1 genus 780 48 114295 no rank 0 1 177 Rickettsia endosymbiont of Bemisia tabaci 337479 species 0 177 1 2 155 0 species group 114292 Rickettsia prowazekii 782 species 0 84 1 species 785 Rickettsia typhi 1 71 0 114277 species group 0 17 457 Rickettsia australis 787 species 0 124 1 Rickettsia monacensis species 109232 0 25 1 0 1 16 Rickettsia rhipicephali species 33992 0 1 12 Rickettsia conorii species 781 Rickettsia amblyommatis species 33989 0 47 1 35790 species Rickettsia japonica 1 1 0 0 20 1 Rickettsia heilongjiangensis 226665 species 39 1 0 786 species Rickettsia akari species 35794 Rickettsia slovaca 2 1 0 species 35792 Rickettsia parkeri 6 1 0 42862 species Rickettsia felis 1 35 0 Rickettsia rickettsii species 783 0 1 11 0 47 1 Rickettsia africae species 35788 1 9 0 1105106 species Rickettsia philipii species 47589 Rickettsia peacockii 61 1 0 0 1 1 Rickettsia montanensis 33991 species Rickettsia massiliae species 35791 0 1 1 0 180 2 1129742 species group 78 1 0 788 species Rickettsia canadensis 102 1 0 species 33990 Rickettsia bellii 69474 genus 1 80 0 0 1 80 Orientia tsutsugamushi 784 species 0 1 75 genus 2115980 0 1 75 Candidatus Phycorickettsia trachydisci 2115978 species 6 555 0 class 1807140 1 Acidithiobacillales 19 order 225057 0 6 555 5 536 0 225058 family 2 Acidithiobacillaceae 1 0 4 534 Acidithiobacillus 1 genus 119977 6 Acidithiobacillus ferrivorans species 160808 0 272 1 species 33059 Acidithiobacillus caldus 149 1 0 1 107 0 920 species Acidithiobacillus ferrooxidans 172 45738 0 subphylum 68525 Epsilonproteobacteria 1 29547 class 34 0 66 19566 0 63 19032 Campylobacterales 1 order 213849 270 0 14 1780 1 Helicobacteraceae 1 family 72293 Helicobacter 1 209 genus 5 0 12 1738 0 67 1 Helicobacter hepaticus species 32025 116 1 0 species 37372 Helicobacter bilis 138563 species Helicobacter cetorum 1 177 0 0 59 1 Helicobacter mustelae 217 species 2593540 no rank 1 32 0 1 32 0 222136 species Helicobacter sp. MIT 01-6242 0 64 1 Helicobacter acinonychis species 212 0 1 769 Helicobacter pylori 210 species Helicobacter typhlonius 76936 species 0 84 1 0 1 66 Helicobacter felis species 214 0 1 253 Helicobacter cinaedi species 213 Helicobacter himalayensis 1591088 species 0 1 46 genus 843 1 41 0 844 species Wolinella succinogenes 41 1 0 family 2771471 3 636 0 2 469 0 genus 202746 Sulfurimonas autotrophica species 202747 0 80 1 39766 species Sulfurimonas denitrificans 389 1 0 1 167 0 genus 286130 1 167 0 species 148813 Sulfuricurvum kujiense family 2771472 4 819 0 265570 genus 0 2 419 no rank 2646778 261 1 0 387093 species Sulfurovum sp. NBC37-1 1 261 0 species 206403 Sulfurovum lithotrophicum 1 158 0 Nitratifractor 1 269260 genus 3 0 2 400 397 1 0 species 269261 Nitratifractor salsuginis 41 15527 0 family 72294 626 Campylobacteraceae 1 Campylobacter 1 genus 194 122 0 12140 26 260714 species Campylobacter insulaenigrae 86 1 0 species 827 Campylobacter ureolyticus 1 297 0 0 1 185 Campylobacter subantarcticus 497724 species 0 1 250 Campylobacter volucris 1031542 species 0 1 526 Campylobacter gracilis species 824 0 1 1525 Campylobacter coli 195 species 0 1 183 Campylobacter helveticus 28898 species 201 species Campylobacter lari 504 1 0 0 1 379 Campylobacter pinnipediorum species 1965231 species 522485 Campylobacter avium 1 148 0 Campylobacter concisus species 199 0 1 4573 Campylobacter peloridis 488546 species 0 1 116 no rank 2593542 527 4 0 Campylobacter sp. RM6137 1660073 species 0 88 1 1 117 0 species 1660074 Campylobacter sp. RM8964 1660076 species Campylobacter sp. RM12175 132 1 0 1500960 species Campylobacter sp. RM16704 190 1 0 305 1 0 species 206 Campylobacter sputorum Campylobacter fetus species 196 0 384 1 374106 species Campylobacter cuniculorum 1 88 0 Campylobacter curvus 200 species 0 134 1 species 76517 Campylobacter hominis 1 125 0 0 1 190 Campylobacter iguaniorum 1244531 species 1 332 0 75658 species Campylobacter lanienae 1 978 0 species 197 Campylobacter jejuni 0 1 183 Campylobacter hyointestinalis species 198 1 Sulfurospirillum 7 57665 genus 0 9 1109 0 1 170 Sulfurospirillum multivorans 66821 species 0 1 71 Sulfurospirillum deleyianum 65553 species species 194424 Sulfurospirillum halorespirans 1 164 0 1 212 0 species 366522 Sulfurospirillum cavolei 3 329 0 no rank 2618290 Sulfurospirillum sp. SL2-1 1986224 species 0 134 1 1 101 0 species 220622 Sulfurospirillum sp. JPD-1 1 94 0 species 1581011 Sulfurospirillum sp. UCH001 1 156 0 species 44674 Sulfurospirillum barnesii 0 5 1652 2321108 no rank 1024 3 0 1 28196 genus 1 Arcobacter 0 1 484 Arcobacter nitrofigilis species 28199 Arcobacter butzleri 28197 species 0 1 539 2321187 genus 0 240 1 1 240 0 species 1850254 Arcobacter sp. LPB0137 no rank 2321207 1 388 0 Arcobacter sp. L species 944547 0 1 388 order 235899 2 500 0 281 1 0 family 2795691 269258 genus 0 1 281 2624044 no rank 281 1 0 1 281 0 species 387092 Nitratiruptor sp. SB155-2 family 224467 219 1 0 1 219 0 genus 191291 0 219 1 Nautilia profundicola species 244787 1 Deltaproteobacteria 53 28221 class 0 26172 106 4 213113 order 1 Desulfurellales 295 3 0 0 2 291 family 117942 1 170 0 genus 33001 33002 species Desulfurella acetivorans 170 1 0 0 1 121 84404 genus 84405 species Hippea maritima 121 1 0 84 order 29 1 Myxococcales 5815 32 0 866 6 0 suborder 80812 643 5 0 49 family 5 Polyangiaceae 1 0 2 505 1 Sorangium 4 genus 39643 1 501 0 species 56 Sorangium cellulosum 50 genus 2 Chondromyces 1 133 2 0 131 1 0 52 species Chondromyces crocatus 1055686 family 0 1 223 0 223 1 1055688 genus 1 223 0 927083 species Sandaracinus amylolyticus 4655 24 0 80811 suborder Myxococcaceae 1 31 family 36 0 2354 9 0 3 756 Corallococcus 1 83461 genus 22 Myxococcus macrosporus species 35 0 1 391 Corallococcus coralloides species 184914 0 1 343 0 5 1562 1 Myxococcus 65 genus 32 1 244 0 species 83455 Myxococcus stipitatus 33 species Myxococcus fulvus 668 1 0 1 330 0 1297742 species Myxococcus hansupus 0 1 255 Myxococcus xanthus 34 species 0 749 5 Anaeromyxobacteraceae 1 family 1524215 2 1 Anaeromyxobacter 14 genus 161492 0 4 747 0 1 310 Anaeromyxobacter dehalogenans 161493 species 2 423 0 no rank 2620896 species 447217 Anaeromyxobacter sp. K 1 187 0 Anaeromyxobacter sp. Fw109-5 species 404589 0 236 1 Archangiaceae 1 39 family 62 0 9 1421 1 Melittangium 11 genus 44 0 181 2 83453 species Melittangium boletus 170 1 0 Cystobacter 1 42 genus 1 0 574 2 573 1 0 43 species Cystobacter fuscus 0 217 2 1 Stigmatella 6 genus 40 Stigmatella aurantiaca species 41 0 1 211 1 Archangium 11 47 genus 0 2 387 1 376 0 48 species Archangium gephyra 1 131 0 1524213 family 0 1 131 genus 1524214 Vulgatibacter incomptus 1391653 species 0 131 1 0 1 210 224462 suborder family 224464 0 1 210 162027 genus 0 210 1 species 80816 Haliangium ochraceum 1 210 0 24 5502 0 74 69541 order 1 Desulfuromonadales 0 9 1582 1 Desulfuromonadaceae 9 213421 family 3 450 0 2 genus 890 1 Desulfuromonas 1603606 species Desulfuromonas soudanensis 1 160 0 0 288 1 2614637 no rank 1823759 species Desulfuromonas sp. DDH964 1 288 0 0 5 1123 Pelobacter 1 18 genus 12 species 19 Pelobacter carbinolicus 1 334 0 2620299 no rank 0 1 182 182 1 0 species 1842532 Pelobacter sp. SFB93 0 266 1 Pelobacter acetylenicus species 29542 Pelobacter propionicus 29543 species 0 1 329 Geobacteraceae 1 family 213422 8 0 14 3846 Geobacter 1 genus 28231 64 0 3322 11 species 351604 Geobacter uraniireducens 308 1 0 1340425 species Geobacter anodireducens 313 1 0 Geobacter daltonii 1203471 species 0 1 377 Geobacter sulfurreducens 35554 species 0 1 357 species 225194 Geobacter bemidjiensis 1 402 0 Geobacter metallireducens species 28232 0 265 1 313985 species Geobacter lovleyi 1 315 0 Geobacter pickeringii 345632 species 0 1 323 2627627 no rank 0 2 598 258 1 0 species 443143 Geobacter sp. M18 1 340 0 443144 species Geobacter sp. M21 2 516 0 1 392332 genus 1 Geoalkalibacter species 483547 Geoalkalibacter subterraneus 515 1 0 order 453227 15 Desulfarculales 1 298 3 0 0 283 2 1 Desulfarculaceae 4 453228 family 453229 genus 1 279 0 279 1 0 species 453230 Desulfarculus baarsii 78 213115 order 1 Desulfovibrionales 23 10168 0 121 2 0 1 family 213117 1 Desulfohalobiaceae genus 45662 1 120 0 45663 species Desulfohalobium retbaense 1 120 0 Desulfovibrionaceae 1 family 194924 13 0 9174 17 0 4 1033 Pseudodesulfovibrio 1 2035811 genus 5 1 372 0 species 1716143 Pseudodesulfovibrio indicus 0 270 1 Pseudodesulfovibrio aespoeensis species 182210 57320 species Pseudodesulfovibrio profundus 1 386 0 0 370 1 2794998 genus 1 370 0 species 880 Desulfovibrio salexigens 0 7268 9 Desulfovibrio 1 genus 872 49 Desulfovibrio desulfuricans species 876 0 1208 1 981 1 0 2593640 no rank Desulfovibrio sp. G11 631220 species 0 1 981 Desulfovibrio alaskensis 58180 species 0 1 321 species 184917 Desulfovibrio magneticus 1 475 0 1 1249 0 901 species Desulfovibrio piger 0 1 192 Candidatus Desulfovibrio trichonymphae 1725232 species 0 1 1346 Desulfovibrio vulgaris 881 species Desulfovibrio fairfieldensis 44742 species 0 1447 1 genus 2582840 0 1 239 species 873 Desulfovibrio africanus 1 239 0 251 1 0 genus 41707 Lawsonia intracellularis 29546 species 0 251 1 family 213116 0 3 795 898 genus 2 Desulfomicrobium 1 795 3 0 0 367 1 Desulfomicrobium baculatum species 899 Desulfomicrobium orale species 132132 0 426 1 2904 14 0 order 213118 41 Desulfobacterales 1 1 Desulfobulbaceae 1 213121 family 0 1203 7 2 893 genus 1 Desulfobulbus 416 2 0 0 1 414 Desulfobulbus sp. ORNL species 1986146 0 282 1 53318 genus 1 282 0 65555 species Desulfocapsa sulfexigens Desulfurivibrio 1 genus 427922 24 0 2 345 Desulfurivibrio alkaliphilus species 427923 0 321 1 genus 109168 1 159 0 species 84980 Desulfotalea psychrophila 159 1 0 0 6 1660 1 Desulfobacteraceae 11 family 213119 0 614 2 genus 896 0 315 1 Desulfococcus oleovorans species 181663 species 897 Desulfococcus multivorans 1 299 0 0 327 1 2295 genus 327 1 0 species 2296 Desulfobacterium autotrophicum 28222 genus 416 1 0 Desulfobacula toluolica 28223 species 0 416 1 0 1 292 genus 218207 Desulfatibacillum alkenivorans 259354 species 0 1 292 213462 order 4 Syntrophobacterales 1 6 1137 0 Syntrophobacteraceae 1 family 213465 2 0 2 243 genus 29526 241 1 0 0 241 1 Syntrophobacter fumaroxidans species 119484 3 890 0 family 213468 genus 60892 1 383 0 Desulfobacca acetoxidans 60893 species 0 383 1 genus 2357 0 1 248 0 1 248 Desulfomonile tiedjei 2358 species 1 259 0 genus 43773 0 259 1 Syntrophus aciditrophicus species 316277 28216 class 169 Betaproteobacteria 1 70647 340 0 119066 no rank 10 522 0 genus 1301080 1 7 0 0 7 1 Candidatus Nasuia deltocephalinicola 1160784 species genus 189384 0 10 1 species 189385 Candidatus Tremblaya princeps 1 10 0 0 24 1 genus 1381133 669502 species Candidatus Profftella armatura 1 24 0 33055 genus 0 5 277 0 1 102 Kinetoplastibacterium blastocrithidii 233181 species Candidatus Kinetoplastibacterium galatii 994695 species 0 29 1 0 61 1 Candidatus Kinetoplastibacterium crithidii 33056 species 31 1 0 species 994696 Candidatus Kinetoplastibacterium oncopeltii 994692 species Candidatus Kinetoplastibacterium desouzaii 1 54 0 genus 327159 2 Candidatus Accumulibacter 1 204 2 0 1 202 0 327160 species Candidatus Accumulibacter phosphatis 1 Neisseriales 70 order 206351 0 12217 37 1499392 family 85 Chromobacteriaceae 1 13 2249 0 2 362 0 genus 168470 2 Laribacter 1 Laribacter hongkongensis 168471 species 0 1 360 1049 4 0 90153 no rank 1049 4 0 genus 535 46 Chromobacterium 1 1 153 0 2641838 no rank 0 153 1 Chromobacterium sp. ATCC 53434 2059672 species 0 430 1 Chromobacterium vaccinii species 1108595 420 1 0 536 species Chromobacterium violaceum Jeongeupia 1 885864 genus 2 0 246 2 0 1 244 no rank 2619593 species 1906741 Jeongeupia sp. USM3 244 1 0 2 286 0 3 568394 genus 1 Pseudogulbenkiania 2642558 no rank 1 283 0 species 748280 Pseudogulbenkiania sp. NH8B 1 283 0 Aquaspirillum 1 genus 187 2 0 2 221 1 219 0 2620219 no rank 1 219 0 1938604 species Aquaspirillum sp. LM1 Neisseriaceae 1 family 481 16 0 9898 23 Vitreoscilla 1 59 genus 1 0 3 679 2627922 no rank 231 1 0 species 96942 Vitreoscilla sp. C1 1 231 0 species 63 Vitreoscilla filiformis 1 447 0 Eikenella 1 538 genus 1 0 2 469 species 539 Eikenella corrodens 1 468 0 0 554 2 1 Simonsiella 1 71 genus Simonsiella muelleri 72 species 0 553 1 0 2 314 Snodgrassella 1 genus 1193515 11 1196083 species Snodgrassella alvi 1 303 0 421605 no rank 0 1 171 0 171 1 Neisseriaceae bacterium DSM 100970 species 2052837 0 7695 12 Neisseria 1 genus 482 77 species 326523 Neisseria zoodegmatis 645 1 0 1 894 0 species 490 Neisseria sicca species 1853278 Neisseria sp. 10023 1 457 0 0 245 1 Neisseria weaveri 28091 species 0 1 2068 Neisseria mucosa species 488 495 species Neisseria elongata 695 1 0 449 1 0 486 species Neisseria lactamica 0 1 948 Neisseria meningitidis 487 species 2623750 no rank 0 652 2 species 1853276 Neisseria sp. 10022 1 223 0 0 1 429 Neisseria sp. KEM232 species 655307 Neisseria gonorrhoeae species 485 0 1 565 2 452 0 no rank 33809 0 1 328 Betaproteobacteria bacterium GR16-43 species 1904640 124 1 0 species 543913 beta proteobacterium CB Rhodocyclales 1 order 206389 66 0 3180 21 0 2 83 family 2008795 83 2 0 genus 73029 1 Dechloromonas 1 0 82 1 Dechloromonas aromatica species 259537 1 Zoogloeaceae 198 family 2008794 0 12 2085 758 5 0 12960 genus 14 Azoarcus 1 0 1 227 Azoarcus olearius 418699 species 1 119 0 species 2067960 Azoarcus sp. SY39 no rank 2629479 2 398 0 Azoarcus sp. KH32C 748247 species 0 236 1 1 162 0 198107 species Azoarcus sp. CIB Thauera 1 33057 genus 40 0 1129 6 0 155 1 Thauera chlorobenzoica species 96773 no rank 2609274 2 533 0 0 1 328 Thauera sp. K11 species 2005884 Thauera sp. MZ1T 85643 species 0 205 1 0 290 1 Thauera humireducens species 1134435 species 59405 Thauera aromatica 1 111 0 Rhodocyclaceae 1 family 75787 23 0 946 6 2 125 0 genus 551759 3 Aromatoleum 1 551760 species Aromatoleum aromaticum 1 122 0 0 1 256 75788 no rank 256 1 0 1898103 species Rhodocyclaceae bacterium 146937 genus 8 Azospira 1 542 2 0 Azospira oryzae species 146939 0 534 1 0 50086 229 Burkholderiales 1 80840 order 696 80864 family 124 Comamonadaceae 1 11330 58 0 0 1 443 201096 genus Alicycliphilus denitrificans species 179636 0 1 443 0 199 1 2678886 genus 0 1 199 Melaminivora sp. SC2-7 species 2116657 Acidovorax 1 genus 12916 153 0 9 2297 Acidovorax ebreus species 721785 0 1 249 0 390 1 Acidovorax citrulli 80869 species 4 1041 0 no rank 2684926 216 1 0 1842533 species Acidovorax sp. RAC01 Acidovorax sp. T1 species 1858609 0 1 235 1 258 0 232721 species Acidovorax sp. JS42 0 332 1 Acidovorax sp. KKS102 species 358220 Acidovorax avenae 80867 species 0 1 268 196 1 0 species 553814 Acidovorax sp. NA3 Candidatus Symbiobacter 1 genus 1436289 1 0 145 2 0 1 144 Candidatus Symbiobacter mobilis 1436290 species 0 1450 5 1 Delftia 94 genus 80865 680 2 0 2613839 no rank 354 1 0 1920191 species Delftia sp. HK171 Delftia sp. Cs1-4 742013 species 0 326 1 0 312 1 Delftia tsuruhatensis species 180282 Delftia acidovorans 80866 species 0 1 364 0 4 568 1 Hydrogenophaga 40 47420 genus 0 423 2 2610897 no rank Hydrogenophaga sp. RAC07 1842537 species 0 1 147 0 1 276 Hydrogenophaga sp. PBC 795665 species 1763535 species Hydrogenophaga crassostreae 1 105 0 genus 2490452 189 2 0 114 1 0 1458425 species Comamonadaceae bacterium A1 species 1458426 Comamonadaceae bacterium B1 1 75 0 0 307 2 Diaphorobacter 1 genus 238749 4 Diaphorobacter polyhydroxybutyrativorans species 1546149 0 1 303 8 364316 genus 1 Verminephrobacter 2 167 0 364317 species Verminephrobacter eiseniae 1 159 0 1 Simplicispira 1 genus 352450 0 2 138 0 1 137 Simplicispira sp. SC1-8 2109915 species 0 1694 5 1 Variovorax 22 genus 34072 436515 species Variovorax boronicumulans 1 380 0 2 461 0 663243 no rank Variovorax sp. PMC12 species 2126319 0 1 358 1 103 0 species 1795631 Variovorax sp. PAMC 28711 Variovorax paradoxus species 34073 0 831 1 0 1370 4 1 Comamonas 4 genus 283 487 1 0 species 225992 Comamonas kerstersii species 1082851 Comamonas serinivorans 279 1 0 600 1 0 species 285 Comamonas testosteroni 0 128 2 Melaminivora 1 genus 1649468 3 no rank 2641902 0 1 125 species 2109913 Melaminivora sp. SC2-9 1 125 0 1 Limnohabitans 1 genus 665874 0 305 3 2 304 0 2626134 no rank 1678128 species Limnohabitans sp. 63ED37-2 1 127 0 species 1678129 Limnohabitans sp. 103DPR2 1 177 0 1 Ottowia 1 219181 genus 0 279 3 0 1 148 2645081 no rank 0 1 148 Ottowia sp. oral taxon 894 1658672 species 0 130 1 Ottowia sp. KADR8-3 species 2109914 0 825 5 1 Rhodoferax 2 genus 28065 192843 species Rhodoferax ferrireducens 1 229 0 Rhodoferax antarcticus species 81479 0 1 152 Rhodoferax koreense species 1842727 0 193 1 1 249 0 species 1484693 Rhodoferax saidenbachensis genus 52972 22 Polaromonas 1 494 3 0 1 207 0 216465 species Polaromonas naphthalenivorans 1 265 0 2638319 no rank 296591 species Polaromonas sp. JS666 1 265 0 1 Ramlibacter 3 genus 174951 0 2 208 94132 species Ramlibacter tataouinensis 1 205 0 132 family 119060 1 Burkholderiaceae 84 17033 0 0 8336 41 Burkholderia 1 32008 genus 401 341 1 0 species 28095 Burkholderia gladioli species group 111527 0 7 1706 1637837 species Burkholderia sp. MSMB0266 1 175 0 Burkholderia thailandensis species 57975 0 387 1 1 90 0 1637831 species Burkholderia sp. MSMB617WGS Burkholderia oklahomensis 342113 species 0 1 110 1637841 species Burkholderia sp. MSMB0852 1 398 0 0 469 1 Burkholderia pseudomallei 28450 species species 13373 Burkholderia mallei 1 77 0 11 1793 0 no rank 2613784 Burkholderia sp. HB1 species 1678678 0 118 1 0 1 162 Burkholderia sp. RPE67 species 758796 0 1 210 Burkholderia sp. PAMC 28687 species 1795874 1 152 0 640512 species Burkholderia sp. CCGE1003 Burkholderia sp. PAMC 26561 1795043 species 0 162 1 1097668 species Burkholderia sp. YI23 176 1 0 180 1 0 1468409 species Burkholderia sp. 2002721687 640510 species Burkholderia sp. CCGE1001 192 1 0 0 110 1 Burkholderia sp. KJ006 species 416344 159 1 0 1740163 species Burkholderia sp. Bp7605 species 1740162 Burkholderia sp. Bp5365 1 172 0 41899 species Burkholderia plantarii 1 222 0 0 3649 19 87882 species group Burkholderia cenocepacia 95486 species 0 530 1 Burkholderia stabilis 95485 species 0 247 1 0 1 124 Burkholderia contaminans 488447 species species 152480 Burkholderia ambifaria 1 127 0 193 1 0 species 60552 Burkholderia vietnamiensis species 488731 Burkholderia seminalis 1 137 0 152500 species Burkholderia dolosa 1 133 0 species 488732 Burkholderia diffusa 1 54 0 87883 species Burkholderia multivorans 427 1 0 1 104 0 488729 species Burkholderia metallica Burkholderia lata species 482957 0 106 1 1 110 0 1503055 species Burkholderia territorii 0 180 1 Burkholderia pseudomultivorans species 1207504 0 1 85 [Pseudomonas] mesoacidophila 265293 species Burkholderia stagnalis species 1503054 0 1 72 1 302 0 101571 species Burkholderia ubonensis 0 1 503 Burkholderia cepacia species 292 97 1 0 species 60550 Burkholderia pyrrocinia 0 118 1 Burkholderia latens 488446 species 0 224 1 Burkholderia glumae species 337 5 1543 0 35 48736 genus 1 Ralstonia 0 332 1 Ralstonia insidiosa 190721 species 0 400 1 Ralstonia pickettii species 329 Ralstonia solanacearum species 305 0 1 586 190 1 0 species 105219 Ralstonia mannitolilytica 1 Pandoraea 33 93217 genus 0 1544 10 0 1 195 Pandoraea oxalativorans species 573737 Pandoraea apista species 93218 0 227 1 0 1 258 Pandoraea pnomenusa species 93220 species 93221 Pandoraea pulmonicola 1 181 0 130 1 0 species 656178 Pandoraea vervacti 656179 species Pandoraea faecigallinarum 140 1 0 Pandoraea thiooxydans 445709 species 0 1 168 0 102 1 Pandoraea norimbergensis 93219 species 93222 species Pandoraea sputorum 1 110 0 44013 genus 4 Polynucleobacter 1 383 4 0 1 155 0 species 1835254 Polynucleobacter duraquae Polynucleobacter necessarius species 576610 0 109 1 Polynucleobacter asymbioticus species 576611 0 1 115 1 Cupriavidus 111 106589 genus 0 2246 9 0 1 218 Cupriavidus gilardii 82541 species 1 383 0 species 119219 Cupriavidus metallidurans 0 254 1 Cupriavidus necator species 106590 268 1 0 species 367825 Cupriavidus sp. USMAA1020 0 1 326 Cupriavidus basilensis species 68895 0 533 2 no rank 2640874 1389192 species Cupriavidus sp. USMAHM13 1 308 0 Cupriavidus sp. USMAA2-4 species 876364 0 225 1 248026 species Cupriavidus pinatubonensis 153 1 0 genus 2571159 1 64 0 64 1 0 412963 species Paraburkholderia rhizoxinica genus 1827195 0 1 172 758793 species Burkholderia sp. RPE64 1 172 0 genus 1822464 57 Paraburkholderia 1 2613 12 0 1 223 0 2026199 species Paraburkholderia aromaticivorans 1 188 0 2615204 no rank Paraburkholderia sp. SOS3 species 1926494 0 1 188 0 1 184 Paraburkholderia phymatum 148447 species Paraburkholderia phenoliruptrix 252970 species 0 298 1 Paraburkholderia fungorum 134537 species 0 236 1 Paraburkholderia phytofirmans 261302 species 0 180 1 1 129 0 311230 species Paraburkholderia terrae species 36873 Paraburkholderia xenovorans 184 1 0 75105 species Paraburkholderia caribensis 1 302 0 1 366 0 948107 species Paraburkholderia sprentiae Paraburkholderia hospita species 169430 0 1 266 224471 no rank 0 1791 17 1 195 0 species 413882 [Polyangium] brachysporum 2 167 0 1 28067 genus 1 Rubrivivax Rubrivivax gelatinosus 28068 species 0 166 1 0 2 146 1 Paucibacter 10 318147 genus no rank 2642959 136 1 0 136 1 0 1768242 species Paucibacter sp. KCTC 42545 237 2 0 34 genus 65047 1 Mitsuaria 0 1 203 2648776 no rank 203 1 0 species 1658665 Mitsuaria sp. 7 0 208 2 1 Roseateles 26 genus 93681 0 1 182 Roseateles depolymerans 76731 species Methylibium 1 genus 316612 5 0 2 174 Methylibium petroleiphilum 105560 species 0 169 1 0 286 2 1 Leptothrix 5 genus 88 1 281 0 species 34029 Leptothrix cholodnii Rhizobacter 1 212743 genus 11 0 148 2 0 137 1 Rhizobacter gummiphilus species 946333 230 2 0 1 genus 32012 1 Thiomonas 0 1 229 Thiomonas intermedia 926 species 0 8989 29 1 Oxalobacteraceae 57 75682 family 0 7 1856 1 Janthinobacterium 18 29580 genus 207 1 0 368607 species Janthinobacterium svalbardensis 0 630 1 Janthinobacterium agaricidamnosum species 55508 no rank 2610881 0 1001 4 0 1 355 Janthinobacterium sp. LM6 species 1938606 species 1236179 Janthinobacterium sp. B9-8 238 1 0 0 1 287 Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 species 0 1 121 Janthinobacterium sp. Marseille 375286 species 1 Herminiimonas 6 genus 303379 0 293 3 1809410 species Herminiimonas arsenitoxidans 1 185 0 0 1 102 Herminiimonas arsenicoxydans 204773 species 6 1490 0 149698 genus 50 Massilia 1 0 1 325 Massilia sp. ZMN-3 2072590 species no rank 2609279 514 2 0 0 223 1 Massilia sp. WG5 1707785 species 1 291 0 1678028 species Massilia sp. NR 4-1 2045208 species Massilia sp. B2 1 225 0 Massilia putida species 1141883 0 376 1 83 genus 963 1 Herbaspirillum 2106 6 0 0 1 374 Herbaspirillum hiltneri 341045 species 1 496 0 92645 species Herbaspirillum frisingense 0 185 1 2624150 no rank species 2025949 Herbaspirillum sp. meg3 185 1 0 613 1 0 species 964 Herbaspirillum seropedicae 80842 species Herbaspirillum rubrisubalbicans 1 355 0 1690 2 0 1 genus 846 1 Oxalobacter 0 1689 1 Oxalobacter formigenes 847 species 0 1497 4 1 Collimonas 47 genus 202907 279113 species Collimonas pratensis 1 364 0 0 1 691 Collimonas arenae species 279058 395 1 0 species 158899 Collimonas fungivorans 0 38 9916 1 Alcaligenaceae 95 506 family 517 1 0 genus 507 1 517 0 511 species Alcaligenes faecalis Bordetella 1 genus 517 124 0 4205 17 0 1 339 Bordetella genomosp. 9 species 1416803 1331258 species Bordetella pseudohinzii 1 235 0 species 463025 Bordetella bronchialis 237 1 0 1 268 0 no rank 2630031 0 1 268 Bordetella sp. H567 species 1697043 Bordetella genomosp. 13 species 463040 0 1 336 0 1 66 Bordetella holmesii 35814 species 0 1 268 Bordetella trematum 123899 species 0 1 260 Bordetella flabilis 463014 species Bordetella hinzii 103855 species 0 1 238 1 299 0 1416806 species Bordetella genomosp. 8 Bordetella avium species 521 0 169 1 Bordetella pertussis species 520 0 1 244 species 463024 Bordetella genomosp. 6 1 163 0 519 species Bordetella parapertussis 1 230 0 0 208 1 Bordetella petrii 94624 species 0 521 1 Bordetella bronchiseptica 518 species genus 305976 0 214 1 no rank 2640016 214 1 0 0 1 214 Pusillimonas sp. T7-7 1007105 species 5 359336 genus 1 Castellaniella 353 2 0 0 1 348 Castellaniella defragrans 75697 species genus 222 70 Achromobacter 1 6 3210 0 351 1 0 species 217204 Achromobacter insolitus species 217203 Achromobacter spanius 444 1 0 272 1 0 2626865 no rank 272 1 0 species 1758194 Achromobacter sp. AONIH1 1 1371 0 species 85698 Achromobacter xylosoxidans species 32002 Achromobacter denitrificans 1 702 0 0 150 1 1472344 genus species 1472345 Basilea psittacipulmonis 150 1 0 2 530 0 genus 290425 Advenella kashmirensis 310575 species 0 1 259 Advenella mimigardefordensis 302406 species 0 1 271 1 Orrella 1 genus 1921582 0 257 2 Orrella dioscoreae species 1851544 0 256 1 90243 genus 81 1 0 81 1 0 90245 species Oligella urethralis 1 Paenalcaligenes 2 1100891 genus 0 2 106 Paenalcaligenes hominis species 643674 0 104 1 genus 29574 0 2 198 0 45 1 Taylorella equigenitalis 29575 species 84590 species Taylorella asinigenitalis 1 153 0 no rank 80841 0 2 331 Burkholderiales bacterium GJ-E10 species 1469502 0 130 1 1 201 0 1834205 species Burkholderiales bacterium YL45 0 40 4021 Nitrosomonadales 1 order 32003 33 15 family 2008793 1 Sterolibacteriaceae 5 499 0 1 Methyloversatilis 2 genus 378210 0 163 2 no rank 2639971 0 161 1 1842540 species Methyloversatilis sp. RAC08 1 161 0 2 321 0 1054211 genus 7 Sulfuritalea 1 1 314 0 748811 species Sulfuritalea hydrogenivorans 1 Methylophilaceae 2 family 32011 0 11 1382 2 160 0 1679002 genus Candidatus Methylopumilus turicensis species 1581680 0 1 66 Candidatus Methylopumilus planktonicus species 1581557 0 1 94 genus 81682 1 Methylovorus 1 3 564 0 0 1 274 Methylovorus glucosotrophus species 266009 1 289 0 2634027 no rank species 887061 Methylovorus sp. MP688 1 289 0 274 2 0 genus 359407 359408 species Methylotenera mobilis 142 1 0 132 1 0 species 1055487 Methylotenera versatilis 0 2 201 Methylophilus 1 16 genus 1 200 1 0 no rank 2630143 1 200 0 1662285 species Methylophilus sp. TWE2 181 1 0 404 genus 0 1 181 Methylobacillus flagellatus 405 species 0 304 3 family 2772226 0 2 127 1 Sulfuricella 1 genus 935200 1 126 0 649841 species Sulfuricella denitrificans 0 1 177 genus 1778653 0 177 1 no rank 2637784 0 177 1 Sulfuriferula sp. AH1 species 1985873 family 2008790 1 Thiobacillaceae 1 95 3 0 3 genus 919 1 Thiobacillus 94 2 0 1 91 0 species 36861 Thiobacillus denitrificans Nitrosomonadaceae 1 206379 family 3 0 1263 12 0 317 4 Nitrosospira 1 genus 35798 2 Nitrosospira briensis species 35799 0 1 135 0 1 59 Nitrosospira lacus 1288494 species 1231 species Nitrosospira multiformis 1 121 0 10 914 genus 1 Nitrosomonas 7 943 0 915 species Nitrosomonas europaea 98 1 0 44577 species Nitrosomonas ureae 211 1 0 0 371 2 no rank 2609265 species 153948 Nitrosomonas sp. AL212 286 1 0 Nitrosomonas sp. Is79A3 species 261292 0 1 85 Nitrosomonas eutropha 916 species 0 1 71 1 182 0 44574 species Nitrosomonas communis 5 445 0 3 family 90627 1 Gallionellaceae 1 Gallionella 2 96 genus 0 2 115 1 113 0 370405 species Gallionella capsiferriformans 5 314343 genus 1 Sideroxydans 2 327 0 0 1 322 Sideroxydans lithotrophicus species 63745 0 837 1010935 1 Gammaproteobacteria 487 class 1236 671 3 0 1240482 order 3 671 0 family 1240483 18 Orbaceae 1 genus 1335631 1 272 0 1267021 species Frischella perrara 1 272 0 genus 1193503 0 381 1 0 381 1 Gilliamella apicola 1196095 species Vibrionales 1 135623 order 9 0 12657 43 42 12648 0 family 641 66 Vibrionaceae 1 Vibrio 1 662 genus 96 0 30 10327 190893 species Vibrio coralliilyticus 1 571 0 674 species Vibrio mimicus 1 457 0 0 1 302 Vibrio tapetis species 52443 103 1 0 species group 1891919 29498 species Vibrio tubiashii 103 1 0 0 2 395 no rank 2614977 1116375 species Vibrio sp. EJY3 1 195 0 0 1 200 Vibrio sp. 2521-89 2014742 species 2025808 species Vibrio qinghaiensis 1 117 0 Vibrio tasmaniensis 212663 species 0 176 1 0 1 146 Vibrio breoganii 553239 species 687 species Vibrio gazogenes 1 358 0 0 273 1 Vibrio nigripulchritudo species 28173 361 1 0 species 29494 Vibrio furnissii 1534743 species Vibrio hyugaensis 1 213 0 0 1 208 Vibrio tritonius species 1435069 334 1 0 55601 species Vibrio anguillarum species 676 Vibrio fluvialis 604 1 0 0 361 1 Vibrio cholerae species 666 0 1 949 Vibrio vulnificus 672 species 1 188 0 45658 species Vibrio scophthalmi species group 717610 10 4115 0 Vibrio harveyi species 669 0 1 409 species subgroup 2315253 323 2 0 0 132 1 Vibrio antiquarius 150340 species Vibrio diabolicus species 50719 0 1 191 155 1 0 190895 species Vibrio rotiferianus 750 1 0 species 680 Vibrio campbellii Vibrio parahaemolyticus 670 species 0 599 1 904 1 0 species 663 Vibrio alginolyticus 1 412 0 696485 species Vibrio owensii 362 1 0 691 species Vibrio natriegens Vibrio jasicida 766224 species 0 1 201 2042066 genus 223 1 0 223 1 0 1755811 species Paraphotobacterium marinum 4 1072 0 5 genus 657 1 Photobacterium species 74109 Photobacterium profundum 1 297 0 1 385 0 1295392 species Photobacterium gaetbulicola species 38293 Photobacterium damselae 385 1 0 Aliivibrio 1 511678 genus 8 0 4 771 Aliivibrio salmonicida 40269 species 0 1 262 Aliivibrio wodanis species 80852 0 1 312 Aliivibrio fischeri 668 species 0 189 1 0 189 2 Grimontia 1 genus 246861 1 Grimontia hollisae 673 species 0 188 1 order 1775403 1 333 0 0 333 1 2689614 family 1 333 0 genus 469322 0 1 333 Steroidobacter denitrificans species 465721 0 18 2641 1 Legionellales 6 118969 order 0 3 274 family 118968 0 75 1 134284 no rank 1 75 0 1592897 species Coxiella-like endosymbiont 0 199 2 genus 776 2676648 no rank 0 1 60 Coxiella endosymbiont of Amblyomma americanum species 325775 0 60 1 777 species Coxiella burnetii 1 139 0 19 family 444 1 Legionellaceae 14 2361 0 14 445 genus 1 Legionella 12 2259 0 0 159 1 Legionella oakridgensis 29423 species 0 1 202 Legionella hackeliae species 449 Legionella waltersii 66969 species 0 128 1 Legionella spiritensis species 452 0 1 138 species 1867846 Legionella clemsonensis 1 179 0 143 1 0 species 28087 Legionella sainthelensi 0 179 1 Legionella longbeachae 450 species Legionella endosymbiont of Polyplax serrata 2005262 species 0 1 22 1 158 0 species 45067 Legionella lansingensis 0 144 1 Legionella fallonii 96230 species 0 1 793 Legionella pneumophila 446 species genus 465 0 1 83 1 83 0 451 species Tatlockia micdadei 1692040 order 4 Acidiferrobacterales 1 322 6 0 6 1692041 family 1 Acidiferrobacteraceae 5 318 0 0 208 2 1 Sulfuricaulis 1 1744881 genus 1 207 0 1620215 species Sulfuricaulis limicola 1692042 genus 1 Sulfurifustis 1 104 2 0 103 1 0 species 1675686 Sulfurifustis variabilis 0 1112 11 118884 no rank 137 2 0 655184 genus Candidatus Thioglobus singularis 1427364 species 0 66 1 0 71 1 Candidatus Thioglobus autotrophicus species 1705394 0 1 178 genus 1524249 0 1 178 Pseudohongiella spirulinae 1249552 species 0 3 253 32036 clade Bathymodiolus septemdierum thioautotrophic gill symbiont species 113267 0 69 1 genus 1541743 0 81 1 species 386487 Candidatus Ruthia magnifica 1 81 0 0 1 103 Calyptogena okutanii thioautotrophic gill symbiont 410330 species 0 210 2 1 Sedimenticola 1 349742 genus 1 209 0 species 1543721 Sedimenticola thiotaurini 106 1 0 198346 clade Candidatus Baumannia cicadellinicola 186490 species 0 1 106 0 228 2 Thiolapillus 1 genus 1608298 9 0 219 1 Thiolapillus brandeum species 1076588 0 2 321 no rank 33811 0 1 94 gamma proteobacterium HdN1 83406 species 1 227 0 species 1248727 endosymbiont of unidentified scaly snail isolate Monju 2 92 0 order 135615 0 2 92 868 family 2 92 0 2 869 genus 1 Dichelobacter 0 1 90 Dichelobacter nodosus 870 species 128 36655 0 119 72274 order 1 Pseudomonadales 28388 85 0 135621 family 142 Pseudomonadaceae 1 351 subfamily 3 653 0 1 Azotobacter 44 genus 352 0 3 653 Azotobacter vinelandii species 354 0 1 193 0 1 416 Azotobacter chroococcum 353 species Pseudomonas 1 286 genus 1167 0 80 27366 1 104 0 312306 species Pseudomonas entomophila Pseudomonas antarctica species 219572 0 1 140 136841 species group 6 2815 0 0 201 1 Pseudomonas alcaligenes 43263 species 1 957 0 287 species Pseudomonas aeruginosa 0 776 1 Pseudomonas mendocina species 300 0 344 1 Pseudomonas citronellolis 53408 species species subgroup 1232139 226 1 0 1149133 species Pseudomonas furukawaii 226 1 0 1 311 0 species 53412 Pseudomonas resinovorans species 1853130 Pseudomonas silesiensis 1 276 0 species 65741 Pseudomonas knackmussii 177 1 0 136843 species group 9 4111 0 Pseudomonas corrugata 47879 species 0 183 1 species 76761 Pseudomonas veronii 1 282 0 200 1 0 75612 species Pseudomonas mandelii 200450 species Pseudomonas trivialis 1 293 0 1 179 0 species 76758 Pseudomonas orientalis 2059 1 0 294 species Pseudomonas fluorescens 300 1 0 species 380021 Pseudomonas protegens Pseudomonas azotoformans 47878 species 0 1 403 200451 species Pseudomonas poae 212 1 0 1 90 0 species 157783 Pseudomonas cremoricolorata Pseudomonas frederiksbergensis 104087 species 0 455 1 288 1 0 237610 species Pseudomonas psychrotolerans 6 4014 0 species group 136845 357 1 0 species 70775 Pseudomonas plecoglossicida 78327 species Pseudomonas mosselii 1 376 0 318 1 0 47880 species Pseudomonas fulva 76759 species Pseudomonas monteilii 495 1 0 Pseudomonas oryzihabitans 47885 species 0 150 1 2318 1 0 303 species Pseudomonas putida Pseudomonas rhizosphaerae species 216142 0 1 94 0 218 1 Pseudomonas cerasi 1583341 species 0 2 1719 species group 136846 0 1 1534 species subgroup 578833 316 species Pseudomonas stutzeri 1 1534 0 0 1 185 Pseudomonas balearica species 74829 0 30 5397 no rank 196821 0 1 127 Pseudomonas sp. SWI44 species 2083053 150 1 0 species 1636610 Pseudomonas sp. PONIH3 Pseudomonas sp. LPH1 1898684 species 0 1 183 Pseudomonas sp. VLB120 species 69328 0 1 181 202 1 0 1207075 species Pseudomonas sp. UW4 species 1259844 Pseudomonas sp. FGI182 203 1 0 Pseudomonas sp. LG1D9 species 2083054 0 1 171 234 1 0 2067572 species Pseudomonas sp. NC02 Pseudomonas sp. FDAARGOS_380 2018067 species 0 135 1 Pseudomonas sp. St29 1500687 species 0 1 138 Pseudomonas sp. URMO17WK12:I11 species 1283291 0 1 240 1 162 0 species 1294143 Pseudomonas sp. ATCC 13867 Pseudomonas sp. TKP 1415630 species 0 1 186 1 124 0 2083051 species Pseudomonas sp. SWI6 species 2083052 Pseudomonas sp. SWI36 247 1 0 0 1 89 Pseudomonas sp. M30-35 1981174 species 0 1 196 Pseudomonas sp. JY-Q species 1338689 252 1 0 species 2069256 Pseudomonas sp. XWY-1 0 101 1 Pseudomonas sp. GR 6-02 1659194 species 0 173 1 Pseudomonas sp. TCU-HL1 1856685 species 1 197 0 species 1028989 Pseudomonas sp. StFLB209 1534110 species Pseudomonas sp. DR 5-09 182 1 0 species 2049589 Pseudomonas sp. HLS-6 1 158 0 0 1 143 Pseudomonas sp. MYb193 1827300 species 184 1 0 1611770 species Pseudomonas sp. MRSN12121 0 1 241 Pseudomonas sp. LH1G9 species 2083055 170 1 0 species 1500686 Pseudomonas sp. Os17 Pseudomonas sp. S-6-2 species 1931241 0 1 257 1930532 species Pseudomonas sp. CC6-YY-74 1 179 0 Pseudomonas sp. CCOS 191 1649877 species 0 1 192 0 178 1 Pseudomonas alcaliphila 101564 species 198620 species Pseudomonas koreensis 338 1 0 136849 species group 3259 8 0 186 1 0 2775504 no rank 0 186 1 Pseudomonas sp. Lz4W 1206777 species Pseudomonas avellanae 46257 species 0 1 227 251695 species subgroup 0 1350 1 species 317 Pseudomonas syringae 1 1350 0 0 275 1 Pseudomonas viridiflava 33069 species 163 1 0 36746 species Pseudomonas cichorii species subgroup 251698 0 655 2 0 301 1 Pseudomonas amygdali 47877 species 1 354 0 species 29438 Pseudomonas savastanoi 403 1 0 species 251701 Pseudomonas syringae group genomosp. 3 Pseudomonas versuta 1788301 species 0 1 143 0 410 1 Pseudomonas brassicacearum 930166 species 237609 species Pseudomonas alkylphenolica 1 152 0 1 432 0 157782 species Pseudomonas parafulva 227 1 0 244566 species Pseudomonas lurida 0 2 1162 136842 species group 0 1 396 Pseudomonas fragi 296 species 0 766 1 Pseudomonas chlororaphis 587753 species 0 227 1 1849530 genus 227 1 0 species 1697053 Oblitimonas alkaliphila 8148 42 0 15 family 468 1 Moraxellaceae 475 genus 8 Moraxella 1 5 584 0 0 1 66 Moraxella catarrhalis 480 species 29433 species Moraxella ovis 84 1 0 0 150 1 Moraxella bovoculi 386891 species Moraxella osloensis 34062 species 0 1 276 0 5828 25 1 Acinetobacter 66 genus 469 0 1 208 Acinetobacter equi 1324350 species 196816 no rank 7 1190 0 Acinetobacter sp. TGL-Y2 species 1407071 0 1 137 Acinetobacter sp. LoGeW2-3 1808001 species 0 1 159 Acinetobacter sp. ACNIH2 1758189 species 0 1 150 0 1 145 Acinetobacter sp. SWBY1 species 2079596 0 203 1 Acinetobacter sp. TTH0-4 species 1646498 0 1 221 Acinetobacter sp. ACNIH1 species 1636603 1 175 0 species 1608473 Acinetobacter sp. NCu2D-2 118 1 0 29430 species Acinetobacter haemolyticus 0 2457 5 species group 909768 577 1 0 species 471 Acinetobacter calcoaceticus 0 1 100 Acinetobacter lactucae species 1785128 106654 species Acinetobacter nosocomialis 1 184 0 0 1 708 Acinetobacter pittii 48296 species Acinetobacter baumannii species 470 0 888 1 0 228 1 species 202950 1 228 0 62977 strain Acinetobacter sp. ADP1 756892 species Acinetobacter indicus 201 1 0 0 1 298 Acinetobacter junii species 40215 species 1789224 Acinetobacter larvae 1 115 0 Acinetobacter oleivorans 1148157 species 0 138 1 Acinetobacter radioresistens species 40216 0 1 138 101 1 0 species 40214 Acinetobacter johnsonii Acinetobacter soli 487316 species 0 215 1 0 1 162 Acinetobacter bereziniae 106648 species 193 1 0 108981 species Acinetobacter schindleri 11 1721 0 497 genus 7 Psychrobacter 1 Psychrobacter cryohalolentis 330922 species 0 128 1 152 1 0 species 261164 Psychrobacter alimentarius 0 6 1125 no rank 196806 0 1 205 Psychrobacter sp. G 571800 species 1720344 species Psychrobacter sp. AntiMn-1 1 111 0 Psychrobacter sp. P11G5 1699624 species 0 1 231 0 130 1 Psychrobacter sp. DAB_AL43B 1028416 species 0 187 1 Psychrobacter sp. P2G3 species 1699622 261 1 0 species 349106 Psychrobacter sp. PRwf-1 155 1 0 species 334543 Psychrobacter arcticus 45610 species Psychrobacter urativorans 154 1 0 24 3452 0 1706369 order 6 Cellvibrionales 1 3 524 0 family 1706372 3 524 0 genus 1217416 7 Halioglobus 1 930806 species Halioglobus pacificus 294 1 0 species 930805 Halioglobus japonicus 223 1 0 0 11 1696 Cellvibrionaceae 1 family 1706371 2 Simiduia 1 447467 genus 20 0 337 2 447471 species Simiduia agarivorans 317 1 0 genus 2425 0 125 1 0 1 125 Teredinibacter turnerae species 2426 5 genus 10 1 Cellvibrio 4 774 0 species 155077 Cellvibrio japonicus 1 338 0 0 2 431 no rank 2624793 0 1 172 Cellvibrio sp. PSBB023 1945512 species 1987723 species Cellvibrio sp. PSBB006 1 259 0 genus 316625 0 202 1 species 86304 Saccharophagus degradans 202 1 0 0 2 256 1 Agarilytica 3 genus 2036021 0 253 1 Agarilytica rhodophyticola 1737490 species 0 460 4 1 Spongiibacteraceae 17 family 1706375 0 1 193 genus 1434050 species 1470434 Zhongshania aliphaticivorans 193 1 0 genus 630749 1 95 0 1 95 0 2631504 no rank 95 1 0 1620392 species Spongiibacter sp. IMCC21906 1084558 genus 1 155 0 0 1 155 Oceanicoccus sagamiensis species 716816 4 1706373 family 1 Microbulbiferaceae 766 5 0 48073 genus 4 Microbulbifer 1 4 762 0 1769779 species Microbulbifer aggregans 1 286 0 252514 species Microbulbifer thermotolerans 1 238 0 0 1 234 Microbulbifer agarilyticus species 260552 order 1934945 161 2 0 1934946 family 2 161 0 2 161 0 1 genus 1934947 1 Immundisolibacter 0 160 1 Immundisolibacter cernigliae 1810504 species 79 order 135614 1 Xanthomonadales 52 10280 0 37 8539 0 171 32033 family 1 Xanthomonadaceae 237 1 0 2370 genus 2371 species Xylella fastidiosa 1 237 0 40323 genus 74 Stenotrophomonas 1 2683 9 0 83617 species Stenotrophomonas nitritireducens 215 1 0 Stenotrophomonas acidaminiphila species 128780 0 231 1 no rank 196198 4 664 0 species 1904944 Stenotrophomonas sp. LM091 1 107 0 1793721 species Stenotrophomonas sp. KCTC 12332 243 1 0 species 1827305 Stenotrophomonas sp. MYb57 184 1 0 Stenotrophomonas sp. WZN-1 species 2005046 0 1 130 species group 995085 1312 1 0 Stenotrophomonas maltophilia 40324 species 0 1 1312 species 216778 Stenotrophomonas rhizophila 187 1 0 1 Xanthomonas 268 338 genus 0 17 3919 Xanthomonas axonopodis 53413 species 0 165 1 310 1 0 343 species Xanthomonas translucens species 347 Xanthomonas oryzae 1 479 0 species 1985254 Xanthomonas phaseoli 143 1 0 1 127 0 366650 species Xanthomonas alfalfae 0 99 1 Xanthomonas fragariae species 48664 56459 species Xanthomonas vasicola 1 99 0 643453 species group 631 2 0 Xanthomonas citri species 346 0 433 1 Xanthomonas fuscans species 366648 0 1 198 0 1 172 Xanthomonas euvesicatoria species 456327 1 149 0 56458 species Xanthomonas sacchari Xanthomonas perforans 442694 species 0 214 1 0 1 601 Xanthomonas campestris 339 species 56460 species Xanthomonas vesicatoria 121 1 0 0 213 1 Xanthomonas hortorum species 56454 0 128 1 Xanthomonas albilineans 29447 species 0 518 3 1 Pseudoxanthomonas 2 genus 83618 335 1 0 314722 species Pseudoxanthomonas suwonensis 0 181 1 Pseudoxanthomonas spadix 415229 species 0 1 88 83614 genus 0 88 1 Luteimonas sp. 100111 2006110 species 0 923 5 1 Lysobacter 23 68 genus 435897 species Lysobacter capsici 1 258 0 262324 species Lysobacter gummosus 210 1 0 0 219 1 Lysobacter enzymogenes 69 species species 84531 Lysobacter antibioticus 1 213 0 family 1775411 107 Rhodanobacteraceae 1 1662 14 0 822 4 0 46 231454 genus 1 Dyella Dyella japonica 231455 species 0 286 1 species 1379159 Dyella jiangningensis 292 1 0 Dyella thiooxydans 445710 species 0 1 198 0 138 2 Frateuria 1 genus 70411 1 Frateuria aurantia 81475 species 0 1 137 2233801 genus 0 94 1 1 94 0 2021234 species Xanthomonadales bacterium D13 0 2 141 1 Dokdonella 8 genus 323413 0 133 1 Dokdonella koreensis species 323415 Rhodanobacter 1 genus 75309 2 0 175 2 species 666685 Rhodanobacter denitrificans 173 1 0 0 2 185 1 Luteibacter 6 242605 genus Luteibacter rhizovicinus 242606 species 0 1 179 0 17578 99 Alteromonadales 1 135622 order 44 family 267891 0 290 1 0 290 1 genus 58050 Moritella viscosa species 80854 0 1 290 0 583 3 267894 family 583 3 0 67572 genus 9 Psychromonas 1 200 1 0 2614957 no rank 1 200 0 species 314282 Psychromonas sp. CNPT3 1 374 0 357794 species Psychromonas ingrahamii 4894 25 0 19 267890 family 1 Shewanellaceae 24 4875 0 genus 22 37 Shewanella 1 271098 species Shewanella halifaxensis 116 1 0 0 1 104 Shewanella bicestrii species 2018305 232 1 0 species 271097 Shewanella sediminis Shewanella amazonensis 60478 species 0 1 294 0 1 131 Shewanella piezotolerans 404011 species species 70863 Shewanella oneidensis 1 219 0 288 1 0 species 260364 Shewanella marisflavi 0 224 1 Shewanella violacea species 60217 0 179 1 Shewanella japonica 93973 species 0 586 1 Shewanella baltica 62322 species species 225848 Shewanella psychrophila 265 1 0 Shewanella pealeana 70864 species 0 1 201 species 192073 Shewanella denitrificans 1 154 0 196818 no rank 839 6 0 Shewanella sp. Pdp11 2059264 species 0 113 1 1 141 0 60480 species Shewanella sp. MR-4 Shewanella sp. W3-18-1 species 351745 0 1 167 species 60481 Shewanella sp. MR-7 1 141 0 94122 species Shewanella sp. ANA-3 202 1 0 0 1 75 Shewanella sp. WE21 2029986 species 359303 species Shewanella loihica 1 130 0 24 species Shewanella putrefaciens 1 224 0 56812 species Shewanella frigidimarina 369 1 0 Shewanella woodyi species 60961 0 1 283 0 4525 25 1 Pseudoalteromonadaceae 9 family 267888 1 Pseudoalteromonas 54 genus 53246 0 4516 24 Pseudoalteromonas spongiae species 298657 0 1 250 1 266 0 species 314281 Pseudoalteromonas tunicata Pseudoalteromonas rubra species 43658 0 1 161 0 111 1 Pseudoalteromonas translucida 166935 species 0 106 1 Pseudoalteromonas marina species 267375 249 1 0 species 43657 Pseudoalteromonas luteoviolacea Pseudoalteromonas nigrifaciens species 28109 0 1 106 Pseudoalteromonas piratica species 1348114 0 1 111 Pseudoalteromonas tetraodonis species 43659 0 356 1 no rank 194690 0 891 5 0 1 158 Pseudoalteromonas sp. Bsw20308 283699 species 1 274 0 1720343 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 82 1 0 species 1514074 Pseudoalteromonas sp. NC201 233 1 0 234831 species Pseudoalteromonas sp. SM9913 1761891 species Pseudoalteromonas sp. 13-15 144 1 0 1 375 0 288 species Pseudoalteromonas atlantica Pseudoalteromonas phenolica 161398 species 0 210 1 1 240 0 species 152297 Pseudoalteromonas issachenkonii 247523 species Pseudoalteromonas aliena 260 1 0 0 1 151 Pseudoalteromonas piscicida 43662 species 1 210 0 394751 species Pseudoalteromonas arctica 0 107 1 Pseudoalteromonas espejiana species 28107 207 1 0 176102 species Pseudoalteromonas agarivorans 228 species Pseudoalteromonas haloplanktis 1 95 0 72275 family 34 Alteromonadaceae 1 5209 27 0 1 Marinobacter 25 genus 2742 0 2110 10 3 678 0 83889 no rank Marinobacter sp. LQ44 1749259 species 0 1 317 0 212 1 Marinobacter sp. BSs20148 species 490759 0 1 149 Marinobacter sp. CP1 1671721 species 0 279 1 Marinobacter similis 1420916 species 330734 species Marinobacter psychrophilus 126 1 0 279 1 0 species 2743 Marinobacter hydrocarbonoclasticus 0 430 1 Marinobacter salarius 1420917 species 0 174 1 Marinobacter adhaerens 1033846 species 0 1 119 Marinobacter salinus 1874317 species 1 Agarivorans 13 261825 genus 0 131 2 1 118 0 species 680279 Agarivorans gilvus 1 420 0 1751872 genus 1526571 species Lacimicrobium alkaliphilum 420 1 0 210 1 0 genus 1621534 1 210 0 species 326544 Paraglaciecola psychrophila 0 264 2 89404 genus Glaciecola nitratireducens species 300231 0 109 1 no rank 2618684 155 1 0 Glaciecola sp. 4H-3-7+YE-5 983545 species 0 1 155 1 Alteromonas 3 genus 226 0 2040 10 1 528 0 314275 species Alteromonas mediterranea 3 459 0 2614992 no rank 1 183 0 2058133 species Alteromonas sp. MB-3u-76 species 1917158 Alteromonas sp. RW2A1 137 1 0 Alteromonas sp. Mac1 species 1777491 0 139 1 Alteromonas macleodii species 28108 0 492 1 Alteromonas australica 589873 species 0 205 1 1 118 0 species 287094 Alteromonas addita Alteromonas naphthalenivorans species 715451 0 114 1 Alteromonas stellipolaris 233316 species 0 121 1 1 Ferrimonadaceae 2 family 267892 0 307 3 52 genus 44011 1 Ferrimonas 305 2 0 253 1 0 species 44012 Ferrimonas balearica 557 6 0 family 267893 2 Idiomarinaceae 1 Idiomarina 1 135575 genus 2 0 5 555 species 1096243 Idiomarina piscisalsi 1 120 0 2614829 no rank 335 2 0 species 2055892 Idiomarina sp. X4 274 1 0 1 61 0 2100422 species Idiomarina sp. OT37-5b Idiomarina loihiensis 135577 species 0 1 98 1169 8 0 2 family 267889 1 Colwelliaceae genus 1518149 1 149 0 1763536 species Thalassotalea crassostreae 149 1 0 Colwellia 1 genus 28228 2 0 1018 6 Colwellia psychrerythraea 28229 species 0 252 1 Colwellia beringensis 1967665 species 0 1 143 3 621 0 196834 no rank species 1816218 Colwellia sp. PAMC 20917 239 1 0 213 1 0 species 58049 Colwellia sp. MT41 species 1816219 Colwellia sp. PAMC 21821 1 169 0 29 7043 0 135624 order 24 Aeromonadales 1 28 7019 0 47 84642 family 1 Aeromonadaceae 642 genus 462 Aeromonas 1 18 5735 0 species 196024 Aeromonas dhakensis 1 118 0 0 204 1 Aeromonas aquatica species 558964 species 654 Aeromonas veronii 1 656 0 species 645 Aeromonas salmonicida 343 1 0 0 252 1 Aeromonas rivipollensis 948519 species 0 1874 8 no rank 257493 1920107 species Aeromonas sp. ASNIH7 246 1 0 0 244 1 Aeromonas sp. ASNIH3 species 1636608 1 223 0 species 2033033 Aeromonas sp. CU5 218 1 0 species 1636606 Aeromonas sp. ASNIH1 0 203 1 Aeromonas sp. CA23 2033032 species 0 197 1 Aeromonas sp. ASNIH2 1636607 species 0 1 222 Aeromonas sp. ASNIH5 1758179 species 0 1 321 Aeromonas sp. ASNIH4 1636609 species Aeromonas media species 651 0 261 1 0 1 223 Aeromonas caviae species 648 0 1 256 Aeromonas schubertii 652 species 0 1 1086 Aeromonas hydrophila species 644 genus 129577 2 Oceanimonas 1 230 2 0 0 228 1 no rank 2636315 Oceanimonas sp. GK1 511062 species 0 228 1 225143 genus 1 Oceanisphaera 1 3 263 0 111 1 0 1903694 species Oceanisphaera sp. AMac2203 0 151 1 Oceanisphaera profunda species 1416627 420 2 0 genus 347533 3 Zobellella 1 Zobellella denitrificans 347534 species 0 1 417 Tolumonas 1 genus 43947 2 0 2 324 1 322 0 species 43948 Tolumonas auensis 0 3754 30 Thiotrichales 1 72273 order 2 26 family 135616 1 Piscirickettsiaceae 1226 13 0 4 genus 1237 1 Piscirickettsia 2 228 0 1 224 0 species 1238 Piscirickettsia salmonis genus 933 2 127 0 1 77 0 species 147268 Thiomicrospira cyclica Thiomicrospira aerophila 92245 species 0 1 50 358 4 0 1 34067 genus 1 Cycloclasticus 0 1 138 Cycloclasticus zancles species 1329899 2621467 no rank 219 2 0 728003 species Cycloclasticus sp. PY97N 1 126 0 0 1 93 Cycloclasticus sp. P1 species 385025 Hydrogenovibrio 1 genus 28884 1 0 255 2 species 39765 Hydrogenovibrio crunogenus 1 254 0 0 232 2 40222 genus 1 138 0 754477 species Methylophaga frappieri Methylophaga nitratireducenticrescens species 754476 0 1 94 family 135617 2 362 0 genus 40751 0 1 166 0 166 1 Thioploca ingrica 40754 species 0 196 1 1021 genus Beggiatoa leptomitoformis 288004 species 0 196 1 2164 14 0 1 34064 family 1 Francisellaceae 0 12 2058 Francisella 1 genus 262 3 0 212 1 Francisella sp. TX077310 573570 species 85 1 0 species 573569 Francisella sp. TX077308 Francisella persica 954 species 0 64 1 Francisella tularensis 263 species 0 393 1 Francisella halioticida 549298 species 0 120 1 1 54 0 622488 species Francisella hispaniensis 0 1 205 Francisella sp. CA97-1460 species 1542390 355 1 0 species 28110 Francisella philomiragia 2610885 no rank 0 314 2 1 217 0 species 1547445 Francisella sp. FSC1006 97 1 0 species 475375 Francisella sp. MA067296 Francisella noatunensis species 657445 0 1 253 genus 1869285 1 105 0 1 105 0 species 594679 Allofrancisella guangzhouensis 7 135618 order 1 Methylococcales 1892 12 0 11 1885 0 14 family 403 1 Methylococcaceae genus 413 0 1 174 Methylococcus capsulatus species 414 0 174 1 Methylovulum 1 762296 genus 1 0 293 2 species 1704499 Methylovulum psychrotolerans 1 292 0 genus 416 5 Methylomonas 1 5 1191 0 2608980 no rank 0 1 268 1 268 0 1727196 species Methylomonas sp. DH-1 253 1 0 species 702114 Methylomonas koyamae 1 362 0 421 species Methylomonas methanica Methylomonas denitrificans 1538553 species 0 1 303 213 2 0 39773 genus 2 Methylomicrobium 1 271065 species Methylomicrobium alcaliphilum 211 1 0 0 62 7995 1 Oceanospirillales 81 135619 order 244 3 0 191033 family 10 Oleiphilaceae 1 1 Oleiphilus 1 141450 genus 0 2 234 species 141451 Oleiphilus messinensis 233 1 0 119 28256 family 1 Halomonadaceae 3903 29 0 114403 no rank 0 52 3 genus 235572 1 30 0 Candidatus Portiera aleyrodidarum 91844 species 0 30 1 genus 1495768 13 1 0 1 13 0 1495769 species Candidatus Evansia muelleri 114185 genus 9 1 0 Candidatus Carsonella ruddii species 114186 0 1 9 3 388 0 1 genus 504090 1 Kushneria Kushneria marisflavi species 157779 0 229 1 158 1 0 698828 species Kushneria konosiri genus 376488 167 1 0 0 167 1 Halotalea alkalilenta 376489 species Chromohalobacter 1 genus 42054 1 0 136 2 species 158080 Chromohalobacter salexigens 135 1 0 0 15 2604 1 Halomonas 30 genus 2745 0 1 119 Halomonas campaniensis 213554 species Halomonas beimenensis 475662 species 0 191 1 230 1 0 species 115561 Halomonas hydrothermalis species 507626 Halomonas chromatireducens 237 1 0 0 8 1508 2609666 no rank 0 1 283 Halomonas sp. 'Soap Lake #6' 1949203 species 0 123 1 Halomonas sp. GT species 1971364 0 1 90 Halomonas sp. 1513 species 1883416 1 283 0 1962264 species Halomonas sp. 'Soap Lake #7' 0 1 192 Halomonas sp. GFAJ-1 1118153 species 0 1 211 Halomonas sp. R57-5 species 1610576 0 164 1 Halomonas sp. KO116 species 1504981 0 162 1 Halomonas sp. SF2003 2136172 species species 1178482 Halomonas huangheensis 1 132 0 1 157 0 1897729 species Halomonas aestuarii 208 2 0 genus 204286 5 Cobetia 1 28258 species Cobetia marina 1 203 0 0 2 229 1 Salinicola 3 404432 genus 1771309 species Salinicola tamaricis 226 1 0 0 9 1236 1 Alcanivoracaceae 1 family 224372 0 150 2 Ketobacter 1 2025617 genus 1 Ketobacter alkanivorans 1917421 species 0 149 1 37 genus 59753 1 Alcanivorax 1085 6 0 Alcanivorax borkumensis 59754 species 0 1 171 Alcanivorax pacificus species 1306787 0 1 156 species 1094342 Alcanivorax xenomutans 1 247 0 2638842 no rank 0 172 1 172 1 0 1113728 species Alcanivorax sp. NBRC 101098 0 302 1 Alcanivorax dieselolei species 285091 2 368 0 family 255527 230494 genus 0 127 1 Reinekea forsetii species 1336806 0 1 127 0 241 1 1445504 genus 1445505 species Gynuella sunshinyii 1 241 0 0 2 232 family 224379 0 2 232 Hahella 1 158481 genus 5 Hahella chejuensis 158327 species 0 227 1 Kangiellaceae 1 1920240 family 2 0 616 6 0 5 614 Kangiella 1 261963 genus 6 0 137 1 Kangiella profundi 1561924 species 914150 species Kangiella geojedonensis 1 128 0 0 1 189 Kangiella koreensis species 261964 Kangiella sediminilitoris 1144748 species 0 1 154 1 Oceanospirillaceae 25 135620 family 0 1315 10 188907 genus 0 144 1 species 188908 Oleispira antarctica 1 144 0 0 3 519 genus 28253 127 1 0 species 119864 Marinomonas mediterranea no rank 196814 236 1 0 0 236 1 Marinomonas sp. MWYL1 400668 species 936476 species Marinomonas posidonica 1 156 0 0 146 2 1 Bacterioplanes 1 genus 1537406 1249553 species Bacterioplanes sanyensis 1 145 0 1 122 0 genus 187492 species 187493 Thalassolituus oleivorans 1 122 0 12 genus 48075 1 Marinobacterium 359 2 0 1 347 0 species 1821621 Marinobacterium aestuarii order 135625 1 Pasteurellales 1 736076 31 0 736075 30 0 family 712 192 Pasteurellaceae 1 Basfia 1 genus 697331 5 0 957 2 952 1 0 157673 species [Mannheimia] succiniciproducens 2 5459 0 genus 745 species 747 Pasteurella multocida 1 4312 0 Pasteurella dagmatis 754 species 0 1 1147 0 1 1466 genus 214906 0 1466 1 Histophilus somni species 731 1 Gallibacterium 4 155493 genus 0 2 576 0 1 572 Gallibacterium anatis 750 species 1 Actinobacillus 13 713 genus 0 3782 5 0 850 1 Actinobacillus equuli 718 species 0 1 581 Actinobacillus succinogenes species 67854 Actinobacillus suis 716 species 0 1 1008 0 1330 1 Actinobacillus pleuropneumoniae 715 species 0 1923 2 1 Bibersteinia 2 476528 genus Bibersteinia trehalosi species 47735 0 1 1921 0 14960 3 1 Aggregatibacter 7 416916 genus 13361 1 0 species 732 Aggregatibacter aphrophilus 1592 1 0 species 714 Aggregatibacter actinomycetemcomitans 6 701631 0 genus 724 21 Haemophilus 1 0 609054 1 Haemophilus parainfluenzae species 729 species 249188 Haemophilus pittmaniae 1 34939 0 0 38687 1 Haemophilus influenzae 727 species 18190 1 0 2609962 no rank 712310 species Haemophilus sp. oral taxon 036 1 18190 0 [Haemophilus] ducreyi 730 species 0 740 1 2 1599 0 3 genus 2094023 1 Glaesserella species 738 Glaesserella parasuis 1 1596 0 1 Mannheimia 19 genus 75984 0 4 3530 0 1350 1 Mannheimia varigena 85404 species 2645054 no rank 789 1 0 1432056 species Mannheimia sp. USDA-ARS-USMARC-1261 1 789 0 75985 species Mannheimia haemolytica 1372 1 0 Chromatiales 1 135613 order 40 0 4580 41 449719 family 1 313 0 437504 genus 0 313 1 0 313 1 Granulosicoccus antarcticus species 437505 no rank 451214 0 227 2 0 2 227 Thiohalobacter 1 genus 1273155 2 0 225 1 Thiohalobacter thiocyanaticus species 585455 1780 15 0 family 1046 8 Chromatiaceae 1 1 Nitrosococcus 3 1227 genus 0 4 372 Nitrosococcus halophilus species 133539 0 1 87 0 181 1 Nitrosococcus oceani 1229 species 0 101 1 Nitrosococcus watsonii 473531 species 0 1 195 no rank 82569 0 195 1 Chromatiaceae bacterium 2141T.STBD.0c.01a species 1978339 13724 genus 1 Thiocystis 1 183 2 0 0 1 182 Thiocystis violascens species 73141 53392 genus 0 230 1 1 230 0 species 1166950 Candidatus Thiodictyon syntrophicum genus 156885 0 254 1 species 80679 Thioflavicoccus mobilis 1 254 0 2 357 0 1 85072 genus 1 Allochromatium 356 1 0 1049 species Allochromatium vinosum 0 149 2 1 Marichromatium 4 85076 genus Marichromatium purpuratum species 37487 0 145 1 1980513 genus 1 32 0 Candidatus Nitrosoglobus terrae 1630141 species 0 1 32 family 1738654 0 1 123 genus 1738655 0 123 1 Woeseia oceani 1548547 species 0 123 1 19 72276 family 1 Ectothiorhodospiraceae 1584 15 0 245 1 0 genus 133193 0 1 245 Alkalilimnicola ehrlichii 351052 species 85108 genus 0 108 1 species 1053 Halorhodospira halophila 1 108 0 genus 1765964 0 1 97 Acidihalobacter prosperus 160660 species 0 1 97 1 Spiribacter 2 1335745 genus 0 134 3 Spiribacter salinus 1335746 species 0 1 55 Spiribacter curvatus 1335757 species 0 1 77 202 2 0 genus 1051 3 Ectothiorhodospira 1 2684909 no rank 0 199 1 199 1 0 1442136 species Ectothiorhodospira sp. BSL-9 1 Thioalkalivibrio 13 106633 genus 0 779 6 1 117 0 2621013 no rank 0 117 1 Thioalkalivibrio sp. K90mix 396595 species 0 107 1 Thioalkalivibrio paradoxus 108010 species 0 1 287 Thioalkalivibrio sulfidiphilus species 1033854 1 96 0 species 106634 Thioalkalivibrio versutus 0 1 159 Thioalkalivibrio nitratireducens 186931 species 3 340 0 1 family 255526 1 Halothiobacillaceae genus 109262 0 2 339 927 species Halothiobacillus neapolitanus 1 123 0 1 216 0 no rank 2636392 Halothiobacillus sp. LS2 1860122 species 0 1 216 0 173 3 1 Wenzhouxiangellaceae 2 1676141 family 1676142 genus 11 Wenzhouxiangella 1 2 171 0 1 160 0 1579979 species Wenzhouxiangella marina 240 162833 0 228 91347 order 1 Enterobacterales Hafniaceae 1 family 1903412 2 0 3110 14 5 568 genus 1 Hafnia 3 926 0 species 569 Hafnia alvei 1 672 0 1 249 0 2621980 no rank 249 1 0 species 1848580 Hafnia sp. CBA7124 Obesumbacterium 1 82982 genus 24 0 291 2 Obesumbacterium proteus 82983 species 0 267 1 8 1891 0 genus 635 90 Edwardsiella 1 234 1 0 93378 species Edwardsiella hoshinae 211 1 0 1263550 species Edwardsiella piscicida 1 447 0 species 636 Edwardsiella tarda 2676541 no rank 0 2 495 Edwardsiella sp. LADL05-105 species 1650654 0 220 1 1 275 0 1578828 species Edwardsiella sp. EA181011 Edwardsiella ictaluri 67780 species 0 1 228 0 1 186 Edwardsiella anguillarum species 1821960 7194 26 0 1903409 family 24 Erwiniaceae 1 129 53335 genus 1 Pantoea 3642 11 0 0 84 1 Candidatus Pantoea carbekii 1235990 species 1 180 0 1891675 species Pantoea alhagi 0 1 426 1654067 species group 0 426 1 Pantoea agglomerans 549 species species 1076550 Pantoea rwandensis 155 1 0 Pantoea ananatis species 553 0 1 375 Pantoea stewartii 66269 species 0 182 1 1597 3 0 no rank 2630326 826 1 0 species 592316 Pantoea sp. At-9b 1 531 0 species 1484157 Pantoea sp. PSNIH2 1484158 species Pantoea sp. PSNIH1 1 240 0 0 1 514 Pantoea vagans 470934 species genus 51228 119 1 0 119 1 0 species 51229 Wigglesworthia glossinidia 8 1991 0 58 genus 551 1 Erwinia 206 1 0 1619313 species Erwinia gerundensis no rank 2622719 248 1 0 215689 species Erwinia sp. Ejp617 248 1 0 233 1 0 species 552 Erwinia amylovora 338565 species Erwinia tasmaniensis 561 1 0 species 182337 Erwinia billingiae 1 388 0 1 239 0 species 79967 Erwinia pyrifoliae Candidatus Erwinia sp. ErCipseudotaxifoliae 1922217 species 0 1 58 1 Tatumella 2 genus 82986 0 183 2 Tatumella citrea 53336 species 0 181 1 2100764 genus 2 591 0 0 1 162 Pantoea gaviniae species 665914 0 429 1 Pantoea calida 665913 species 0 1 644 genus 32199 species 9 Buchnera aphidicola 1 644 0 25 family 1903414 1 Morganellaceae 8384 21 0 32 1 0 637 genus 1 32 0 634113 species Arsenophonus symbiont of Lipoptena fortisetosa 1360 6 0 66 genus 626 1 Xenorhabdus 351671 species Xenorhabdus doucetiae 187 1 0 40577 species Xenorhabdus poinarii 1 155 0 628 species Xenorhabdus nematophila 1 311 0 species 351679 Xenorhabdus hominickii 269 1 0 species 40576 Xenorhabdus bovienii 1 372 0 Photorhabdus 1 29487 genus 11 0 820 4 Photorhabdus luminescens 29488 species 0 1 353 Photorhabdus temperata 574560 species 0 205 1 0 251 1 Photorhabdus asymbiotica species 291112 2 780 0 5 581 genus 1 Morganella 0 1 775 Morganella morganii species 582 Proteus 1 genus 583 12 0 4303 3 Proteus mirabilis species 584 0 1 3655 0 636 1 Proteus vulgaris 585 species 1 Providencia 8 genus 586 0 1064 4 Providencia stuartii species 588 0 1 429 1 263 0 587 species Providencia rettgeri 0 1 364 Providencia alcalifaciens species 126385 172 1 0 family 1903416 genus 82984 0 172 1 Pragia fontium 82985 species 0 172 1 0 39 12782 1 Yersiniaceae 35 family 1903411 0 7280 16 Serratia 1 genus 613 286 0 1 333 Serratia proteamaculans species 28151 47917 species Serratia fonticola 678 1 0 0 369 1 Serratia ficaria species 61651 1 716 0 82996 species Serratia plymuthica 61652 species Serratia rubidaea 464 1 0 Serratia marcescens species 615 0 1175 1 2957 8 0 2647522 no rank 364 1 0 species 104623 Serratia sp. ATCC 39006 Serratia sp. SSNIH1 1758196 species 0 202 1 species 768493 Serratia sp. AS13 326 1 0 694 1 0 species 2033438 Serratia sp. MYb239 187 1 0 species 1327989 Serratia sp. FS14 Serratia sp. FGI94 671990 species 0 578 1 1 326 0 species 768490 Serratia sp. AS12 Serratia sp. SCBI species 488142 0 1 280 614 species Serratia liquefaciens 302 1 0 1 Gibbsiella 1 929812 genus 0 2 226 1 225 0 929813 species Gibbsiella quercinecans 4202 13 0 120 629 genus 1 Yersinia Yersinia frederiksenii 29484 species 0 1 714 Yersinia aleksiciae species 263819 0 1 115 1649845 species group 0 706 3 367190 species Yersinia similis 1 215 0 Yersinia pestis 632 species 0 1 190 0 1 301 Yersinia pseudotuberculosis species 633 species 28152 Yersinia kristensenii 281 1 0 0 1 262 Yersinia ruckeri species 29486 Yersinia rohdei species 29485 0 1 272 631 species Yersinia intermedia 1 205 0 270 1 0 29483 species Yersinia aldovae no rank 2653513 1 202 0 species 1839800 Yersinia sp. FDAARGOS_228 202 1 0 1 1055 0 630 species Yersinia enterocolitica 0 4 780 1 Rahnella 11 34037 genus Rahnella aquatilis 34038 species 0 1 247 2635087 no rank 522 2 0 1805933 species Rouxiella sp. ERMR1:05 1 281 0 1 241 0 741091 species Rahnella sp. Y9602 1565532 genus Rouxiella 1 1 0 2 258 0 14 genus 1745211 1 Chania 0 1 244 Chania multitudinisentens species 1639108 1 Enterobacteriaceae 530 543 family 0 116 124347 1335483 genus 3 Shimwellia 1 2 293 0 290 1 0 563 species Shimwellia blattae 2 210 0 401618 genus 1 Candidatus Riesia 1 401619 species Candidatus Riesia pediculicola 209 1 0 1360 5 0 genus 1330547 3 Kosakonia 1 283686 species Kosakonia radicincitans 1 497 0 208223 species Kosakonia cowanii 1 457 0 1158459 species Kosakonia sacchari 199 1 0 204 1 0 497725 species Kosakonia oryzae 0 4561 3 1 Salmonella 2 genus 590 4136 1 0 species 28901 Salmonella enterica 423 1 0 species 54736 Salmonella bongori 0 52 1 409304 genus species 168169 Candidatus Ishikawaella capsulata 52 1 0 0 1666 5 no rank 36866 2066051 species Enterobacteriaceae bacterium ENNIH1 1 316 0 Enterobacteriaceae bacterium ENNIH3 1920128 species 0 359 1 Enterobacteriaceae bacterium strain FGI 57 693444 species 0 1 226 Enterobacteriaceae bacterium ENNIH2 species 1920109 0 1 495 species 891974 Plautia stali symbiont 270 1 0 4 4230 0 genus 620 103 Shigella 1 0 1858 1 no rank 2629414 1813821 species Shigella sp. PAMC 28760 1 1858 0 1 1004 0 623 species Shigella flexneri 622 species Shigella dysenteriae 1 1265 0 0 4 1031 1 Lelliottia 2 1330545 genus 0 437 1 Lelliottia amnigena species 61646 1907578 species Lelliottia jeotgali 216 1 0 69220 species Lelliottia nimipressuralis 376 1 0 1 Leclercia 13 83654 genus 0 776 4 173 1 0 83655 species Leclercia adecarboxylata 2627398 no rank 590 2 0 species 1920114 Leclercia sp. LSNIH1 385 1 0 1 205 0 1920116 species Leclercia sp. LSNIH3 1 Cronobacter 27 genus 413496 0 2027 8 Cronobacter muytjensii 413501 species 0 1 202 1 536 0 28141 species Cronobacter sakazakii 1 210 0 413497 species Cronobacter dublinensis 1 162 0 species 413502 Cronobacter turicensis Cronobacter condimenti 1163710 species 0 1 233 200 1 0 535744 species Cronobacter universalis 0 457 1 Cronobacter malonaticus species 413503 no rank 191675 15 815 0 84563 clade 0 815 15 0 1 10 genus 1906657 Candidatus Doolittlea endobia species 1778262 0 10 1 clade 199891 0 1 54 secondary endosymbiont of Trabutina mannipara 1835721 species 0 54 1 0 94 1 genus 1906661 1 94 0 species 1070130 Candidatus Gullanella endobia 1906659 genus 0 1 28 1 28 0 1778263 species Candidatus Hoaglandella endobia 1906660 genus 1 25 0 0 25 1 Candidatus Mikella endobia species 1778264 0 3 263 clade 146507 79 1 0 568987 genus 0 1 79 Candidatus Hamiltonella defensa 138072 species 134287 species secondary endosymbiont of Heteropsylla cubana 1 89 0 secondary endosymbiont of Ctenarytaina eucalypti 1199245 species 0 95 1 clade 84564 277 6 0 203804 genus 277 6 0 1 27 0 species 251542 Candidatus Blochmannia chromaiodes species 101534 Candidatus Blochmannia pennsylvanicus 28 1 0 species 251535 Candidatus Blochmannia vafer 1 41 0 0 41 1 Candidatus Blochmannia floridanus 203907 species 0 140 2 711328 no rank 1 109 0 species 1505597 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 31 1 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 1505596 1 64 0 1682492 genus 64 1 0 1410383 species Candidatus Tachikawaea gelatinosa genus 579 0 1 401 61648 species Kluyvera intermedia 1 401 0 17188 5 0 99 genus 561 1 Escherichia Escherichia marmotae 1499973 species 0 385 1 0 959 1 Escherichia albertii 208962 species Escherichia coli species 562 0 1 14947 species 564 Escherichia fergusonii 798 1 0 3 1255 0 40 genus 160674 1 Raoultella species 575 Raoultella planticola 339 1 0 1 876 0 54291 species Raoultella ornithinolytica 22 38434 0 547 genus 630 Enterobacter 1 12 29838 0 species group 354276 363 1 0 species 208224 Enterobacter kobei 0 3 1485 2757714 no rank 1 305 0 species 1915310 Enterobacter cloacae complex sp. ECNIH7 1 290 0 2027919 species Enterobacter cloacae complex bacterium Enterobacter cloacae complex sp. FDA-CDC-AR_0132 species 2077137 0 890 1 Enterobacter asburiae 61645 species 0 783 1 Enterobacter cancerogenus species 69218 0 298 1 0 3 14116 1 Enterobacter hormaechei 7663 158836 species 657 1 0 1812934 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' subspecies 1296536 Enterobacter xiangfangensis 1 5796 0 1 10954 0 species 550 Enterobacter cloacae 299767 species Enterobacter ludwigii 1 957 0 0 1 882 Enterobacter cloacae complex 'Hoffmann cluster IV' 1812935 species 2608935 no rank 0 9 7966 species 1914861 Enterobacter sp. SA187 1 484 0 0 1 5690 Enterobacter sp. CRENT-193 species 2051905 399742 species Enterobacter sp. 638 1 199 0 Enterobacter sp. FY-07 species 1692238 0 446 1 Enterobacter sp. Crenshaw 1977566 species 0 1 303 species 1560339 Enterobacter sp. E20 185 1 0 1868135 species Enterobacter sp. HK169 1 254 0 0 246 1 Enterobacter sp. ODB01 1827481 species 0 159 1 Enterobacter sp. R4-368 species 1166130 1330546 genus 2 Pluralibacter 1 905 3 0 0 453 1 [Enterobacter] lignolyticus 1334193 species Pluralibacter gergoviae 61647 species 0 450 1 1 Citrobacter 409 genus 544 0 22658 14 1 242 0 67825 species Citrobacter rodentium species 35703 Citrobacter amalonaticus 1350 1 0 Citrobacter farmeri 67824 species 0 1 377 1344959 species group 0 18111 7 Citrobacter braakii species 57706 0 1 2266 2077147 species Citrobacter freundii complex sp. CFNIH3 1 1883 0 2066049 species Citrobacter freundii complex sp. CFNIH2 259 1 0 0 1 1044 Citrobacter werkmanii 67827 species 1782 1 0 species 2077149 Citrobacter freundii complex sp. CFNIH9 Citrobacter freundii complex sp. CFNIH4 species 2077148 0 2358 1 Citrobacter freundii species 546 0 1 8519 545 species Citrobacter koseri 503 1 0 2644389 no rank 0 2 1666 species 1920110 Citrobacter sp. CFNIH10 852 1 0 1 814 0 1702170 species Citrobacter sp. FDAARGOS_156 genus 1048757 1 Candidatus Moranella 1 2 60 0 0 59 1 Candidatus Moranella endobia species 1048758 0 851 2 Cedecea 1 genus 158483 2 0 1 849 Cedecea neteri 158822 species Klebsiella 1 genus 570 535 0 10 25044 Klebsiella quasipneumoniae species 1463165 0 1 4100 0 1 2364 Klebsiella oxytoca 571 species 1 4733 0 244366 species Klebsiella variicola 2 757 0 no rank 2608929 1905288 species Klebsiella sp. LTGPAF-6F 1 389 0 368 1 0 1934254 species Klebsiella sp. M5al 2026240 species Klebsiella quasivariicola 583 1 0 1 815 0 species 1134687 Klebsiella michiganensis 0 645 1 Klebsiella aerogenes species 548 Klebsiella pneumoniae species 573 0 10512 1 0 659 2 no rank 451511 0 2 659 Plesiomonas 1 702 genus 8 1 651 0 species 703 Plesiomonas shigelloides 7 1903410 family 1 Pectobacteriaceae 20 5957 0 2601 6 0 genus 122277 21 Pectobacterium 1 0 1 1314 Pectobacterium carotovorum species 554 0 1 426 Pectobacterium parmentieri species 1905730 Pectobacterium atrosepticum 29471 species 0 226 1 Pectobacterium wasabiae species 55208 0 332 1 282 1 0 2042057 species Pectobacterium polaris 1 Brenneria 15 genus 71655 0 2 412 397 1 0 species 1109412 Brenneria goodwinii 1 Sodalis 14 genus 84565 0 887 5 Sodalis praecaptivus 1239307 species 0 1 328 species 1486991 Candidatus Sodalis pierantonius 220 1 0 0 304 1 Sodalis glossinidius 63612 species Sodalis endosymbiont of Henestaris halophilus 1929246 species 0 21 1 0 6 2050 1 Dickeya 39 204037 genus Dickeya solani species 1089444 0 1 473 Dickeya dianthicola 204039 species 0 214 1 1 280 0 1778540 species Dickeya fangzhongdai Dickeya zeae 204042 species 0 820 1 0 1 224 Dickeya dadantii 204038 species 537 5 0 phylum 200940 0 5 537 67799 class 537 5 0 188710 order 537 5 0 1 family 188711 1 Thermodesulfobacteriaceae 0 82 1 241192 genus 82 1 0 171695 species Thermodesulfatator indicus 0 375 2 genus 1740 Thermodesulfobacterium commune species 1741 0 1 212 Thermodesulfobacterium geofontis species 1295609 0 1 163 444090 genus 0 79 1 Caldimicrobium thiodismutans species 1653476 0 79 1 128 2 0 2323 no rank clade 1783234 2 128 0 0 1 52 phylum 95818 no rank 1895827 0 52 1 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 species 2056494 0 52 1 95901 clade 0 76 1 1 76 0 2497643 class 0 76 1 2497644 order 76 1 0 family 2497645 1 76 0 genus 1551504 Candidatus Babela massiliensis 673862 species 0 76 1 phylum 68297 0 233 3 3 233 0 1 class 203486 1 Dictyoglomia 0 232 2 order 203487 family 203488 2 232 0 13 genus 0 2 232 128 1 0 species 14 Dictyoglomus thermophilum Dictyoglomus turgidum species 513050 0 104 1 11 1076 0 40117 phylum 1 Nitrospira 2 class 203693 0 11 1076 0 1074 10 Nitrospirales 1 189778 order 5 189779 family 0 9 1069 3 390 0 genus 179 species group 261385 0 1 138 0 1 138 Leptospirillum sp. Group II 'CF-1' 1660083 species 261386 species group 117 1 0 Leptospirillum ferriphilum 178606 species 0 1 117 655606 species group 0 135 1 Leptospirillum ferrooxidans species 180 0 135 1 0 511 5 Nitrospira 1 genus 1234 4 Nitrospira defluvii species 330214 0 1 148 1 197 0 species 1325564 Nitrospira japonica Nitrospira moscoviensis species 42253 0 1 99 Candidatus Nitrospira inopinata 1715989 species 0 63 1 genus 28261 0 1 168 Thermodesulfovibrio yellowstonii 28262 species 0 1 168 clade 2498710 0 80 1 0 1 80 phylum 67814 0 80 1 693071 class 0 80 1 693072 order 1 80 0 693073 family genus 693074 0 1 80 Caldisericum exile species 693075 0 1 80 0 13378 55 203691 phylum 203692 class 34 Spirochaetia 1 13378 55 0 0 1325 8 order 1643688 0 8 1325 Leptospiraceae 1 family 170 2 1 Leptospira 1 genus 171 0 1239 6 Leptospira biflexa 172 species 0 152 1 Leptospira borgpetersenii species 174 0 212 1 28452 species Leptospira alstonii 243 1 0 species 173 Leptospira interrogans 453 1 0 28183 species Leptospira santarosai 1 178 0 338321 genus 84 1 0 Turneriella parva species 29510 0 1 84 0 6 3214 order 1643686 143786 family 189 Brachyspiraceae 1 3214 6 0 3025 5 0 genus 29521 141 Brachyspira 1 52584 species Brachyspira pilosicoli 761 1 0 Brachyspira hyodysenteriae species 159 0 677 1 1 508 0 84377 species Brachyspira intermedia species 84378 Brachyspira murdochii 1 938 0 0 8805 40 1 Spirochaetales 198 order 136 0 17 1646 1 Borreliaceae 1 1643685 family 1 Borrelia 2 138 genus 0 1052 8 141 species Borrelia parkeri 298 1 0 species 142 Borrelia turicatae 239 1 0 1 114 0 species 40834 Borrelia duttonii 148 1 0 44449 species Borrelia recurrentis species 47466 Borrelia miyamotoi 1 114 0 species 140 Borrelia hermsii 71 1 0 Borrelia anserina 143 species 0 66 1 1 Borreliella 13 genus 64895 0 8 593 1 53 0 species 1674146 Borrelia mayonii 28 1 0 species 62088 Borreliella valaisiana species 29519 Borreliella garinii 146 1 0 139 species Borreliella burgdorferi 80 1 0 0 84 1 Borreliella bavariensis species 664662 Borreliella bissettii species 64897 0 1 65 Borreliella afzelii species 29518 0 1 124 0 22 6961 1 Spirochaetaceae 35 family 137 146 genus 0 2 602 0 303 1 Spirochaeta africana 46355 species 0 299 1 Spirochaeta thermophila 154 species 1616789 genus 0 267 1 Salinispira pacifica species 1307761 0 1 267 4 1141 0 3 399320 genus 1 Sphaerochaeta Sphaerochaeta coccoides 273376 species 0 1 362 0 454 1 Sphaerochaeta globosa species 1131703 322 1 0 species 1131707 Sphaerochaeta pleomorpha 2 1911556 genus 1 Sediminispirochaeta 389 2 0 387 1 0 species 55206 Sediminispirochaeta smaragdinae Treponema 1 157 genus 6 0 12 4527 0 432 1 Treponema brennaborense species 81028 0 422 1 Treponema denticola species 158 160 species Treponema pallidum 66 1 0 Treponema primitia species 88058 0 339 1 Treponema paraluiscuniculi species 53435 0 63 1 0 1 428 no rank 2638727 Treponema sp. OMZ 838 1539298 species 0 1 428 0 1 895 Treponema putidum 221027 species 409322 species Treponema pedis 300 1 0 215591 species Treponema caldarium 1 366 0 0 882 1 Treponema succinifaciens species 167 150829 species Treponema azotonutricium 328 1 0 phylum 508458 0 9 56107 1 Synergistia 2 class 649775 0 9 56107 order 649776 1 Synergistales 1 8 56105 0 family 649777 190 Synergistaceae 1 7 56104 0 genus 336260 0 1 121 Thermovirga lienii species 336261 0 121 1 2 55227 0 genus 508459 1 Cloacibacillus 1 55226 1 0 1197717 species Cloacibacillus porcorum 81466 genus 1 179 0 Aminobacterium colombiense species 81468 0 1 179 0 1 251 81461 genus 0 1 251 Thermanaerovibrio acidaminovorans species 81462 0 136 1 genus 49894 0 1 136 Acetomicrobium mobile species 97477 1783272 clade 3422118 1563 0 678 3093053 0 74 phylum 1239 1 Firmicutes 252916 420 0 76 class 91061 1 Bacilli 0 162 143600 1 Lactobacillales 936 186826 order 1 Carnobacteriaceae 15 family 186828 0 10 3513 191769 genus 0 1 530 no rank 2632303 530 1 0 1 530 0 species 1911586 Marinilactibacillus sp. 15R 0 2455 5 Carnobacterium 1 2747 genus 16 0 756 2 257487 no rank Carnobacterium sp. 17-4 208596 species 0 1 376 species 1564681 Carnobacterium sp. CP1 380 1 0 349 1 0 147709 species Carnobacterium inhibens Carnobacterium maltaromaticum 2751 species 0 1334 1 0 513 3 1 Jeotgalibaca 1 genus 1470540 species 708126 Jeotgalibaca dankookensis 1 245 0 2621505 no rank 0 267 1 1903686 species Jeotgalibaca sp. PTS2502 267 1 0 263855 no rank 249 1 0 Lactobacillales bacterium 1993866 species 0 249 1 16846 20 0 81852 family 32 Enterococcaceae 1 Tetragenococcus 1 genus 51668 1 0 758 2 757 1 0 51669 species Tetragenococcus halophilus 0 2 596 Melissococcus 1 genus 33969 1 33970 species Melissococcus plutonius 1 595 0 0 12 14740 1 Enterococcus 700 1350 genus species 1352 Enterococcus faecium 8028 1 0 53346 species Enterococcus mundtii 1 463 0 2608891 no rank 3 1023 0 366 1 0 species 2057791 Enterococcus sp. CR-Ec1 316 1 0 species 2060306 Enterococcus sp. FDAARGOS_163 0 341 1 Enterococcus sp. FDAARGOS_375 2060307 species species 1354 Enterococcus hirae 1 457 0 species 417368 Enterococcus thailandicus 1 400 0 1 438 0 species 2005703 Enterococcus wangshanyuanii 1 766 0 species 53345 Enterococcus durans species 37734 Enterococcus casseliflavus 1 440 0 1351 species Enterococcus faecalis 1 2025 0 genus 2737 3 Vagococcus 1 720 3 0 species 519472 Vagococcus teuberi 1 375 0 1 342 0 species 633807 Vagococcus penaei Streptococcaceae 1 family 1300 830 0 49 81226 0 43 77441 1 Streptococcus 1162 1301 genus 0 1 1455 Streptococcus equinus species 1335 882 1 0 species 315405 Streptococcus gallolyticus species 1814128 Streptococcus halotolerans 1 204 0 1888195 species Streptococcus himalayensis 1 229 0 species 1309 Streptococcus mutans 1 505 0 Streptococcus merionis species 400065 0 177 1 0 168 1 Streptococcus pantholopis species 1811193 0 1197 1 Streptococcus lutetiensis 150055 species Streptococcus marmotae 1825069 species 0 1 191 0 9796 1 Streptococcus salivarius 1304 species species 1307 Streptococcus suis 6689 1 0 0 385 1 Streptococcus iniae species 1346 0 2 865 119603 species group 394 1 0 1334 species Streptococcus dysgalactiae 1336 species Streptococcus equi 1 471 0 species 1348 Streptococcus parauberis 323 1 0 Streptococcus acidominimus species 1326 0 1251 1 1 221 0 species 1349 Streptococcus uberis 354 1 0 species 257758 Streptococcus pseudopneumoniae species 1313 Streptococcus pneumoniae 947 1 0 13692 7 0 no rank 2608887 Streptococcus sp. A12 species 1759399 0 1 1835 species 712633 Streptococcus sp. oral taxon 431 1 1415 0 Streptococcus sp. I-G2 species 1156431 0 3414 1 Streptococcus sp. FDAARGOS_192 species 1839799 0 2914 1 1 249 0 1319 species Streptococcus sp. 'group B' 522 1 0 species 1902136 Streptococcus sp. NPS 308 0 1 3343 Streptococcus sp. I-P16 1156433 species 0 527 1 Streptococcus cristatus 45634 species 2003 1 0 species 1311 Streptococcus agalactiae species 82348 Streptococcus pluranimalium 1 169 0 0 3425 3 671232 species group 0 1 554 Streptococcus intermedius 1338 species 0 621 1 Streptococcus constellatus 76860 species species 1328 Streptococcus anginosus 1 2250 0 1670 1 0 28037 species Streptococcus mitis 366 1 0 59310 species Streptococcus macedonicus 0 1 16546 Streptococcus parasanguinis species 1318 1607 1 0 197614 species Streptococcus pasteurianus 1314 species Streptococcus pyogenes 1 3638 0 Streptococcus thermophilus species 1308 0 978 1 Streptococcus oralis species 1303 0 1 1673 1524 1 0 1302 species Streptococcus gordonii 0 1516 1 Streptococcus infantarius 102684 species 0 1106 1 Streptococcus sanguinis 1305 species Lactococcus 1 genus 1357 2 0 5 2955 species 1363 Lactococcus garvieae 573 1 0 Lactococcus lactis 1358 species 0 1713 1 1 386 0 species 1364 Lactococcus piscium 0 1 281 Lactococcus raffinolactis 1366 species 0 1757 6 186827 family 6 1757 0 genus 1375 Aerococcus sanguinicola species 119206 0 1 190 Aerococcus viridans species 1377 0 1 224 51665 species Aerococcus urinaeequi 1 378 0 0 613 1 Aerococcus urinae species 1376 1 136 0 87541 species Aerococcus christensenii 0 216 1 Aerococcus urinaehominis 128944 species 81850 family 12 Leuconostocaceae 1 2929 17 0 1839 9 0 9 1243 genus 1 Leuconostoc Leuconostoc garlicum species 255248 0 141 1 190 1 0 species 136609 Leuconostoc kimchii 202 1 0 1244 species Leuconostoc gelidum Leuconostoc mesenteroides species 1245 0 437 1 33964 species Leuconostoc citreum 1 294 0 Leuconostoc lactis species 1246 0 203 1 0 213 1 2685106 no rank Leuconostoc sp. C2 species 979982 0 1 213 species 1252 Leuconostoc carnosum 1 150 0 Weissella 1 genus 46255 2 0 973 6 0 1 211 Weissella jogaejeotgali species 1631871 0 1 118 Weissella koreensis 165096 species 0 1 204 Weissella paramesenteroides 1249 species 0 233 1 Weissella ceti 759620 species 137591 species Weissella cibaria 205 1 0 46254 genus 0 105 1 0 1 105 Oenococcus oeni species 1247 0 58 36144 Lactobacillaceae 1 33958 family 51 0 3 676 2767886 genus 1580 species Lactobacillus brevis 480 1 0 species 267363 Lactobacillus zymae 1 87 0 637971 species Lactobacillus koreensis 109 1 0 0 6 20334 genus 2767879 0 1 303 Lactobacillus alimentarius 1602 species 0 1 297 Lactobacillus allii species 1847728 Lactobacillus heilongjiangensis species 1074467 0 1 428 1007676 species Lactobacillus ginsenosidimutans 1 352 0 0 1 18737 Lactobacillus farciminis 1612 species 0 217 1 Lactobacillus crustorum species 392416 genus 2767877 0 112 1 1 112 0 148814 species Lactobacillus kunkeei genus 2767890 1 193 0 Lactobacillus hokkaidonensis species 1193095 0 1 193 genus 2767887 4 2309 0 0 206 1 Lactobacillus agilis 1601 species 1 215 0 species 89059 Lactobacillus acidipiscis 0 1 742 Lactobacillus salivarius species 1624 1 1146 0 1623 species Lactobacillus ruminis 6 1294 0 5 genus 1253 1 Pediococcus 1 189 0 species 114090 Pediococcus inopinatus Pediococcus damnosus species 51663 0 1 277 0 428 1 Pediococcus pentosaceus 1255 species species group 1670797 0 171 1 species 1254 Pediococcus acidilactici 171 1 0 species 187452 Pediococcus claussenii 1 224 0 0 3 1188 2742598 genus 1 547 0 1598 species Lactobacillus reuteri species 1613 Lactobacillus fermentum 1 415 0 226 1 0 species 97478 Lactobacillus mucosae 0 16 4425 1 Lactobacillus 580 1578 genus Lactobacillus kefiranofaciens species 267818 0 179 1 83683 species Lactobacillus amylolyticus 1 151 0 0 1 289 Lactobacillus helveticus 1587 species 0 1 145 Lactobacillus acidophilus 1579 species 4 683 0 2620435 no rank 0 107 1 Lactobacillus sp. wkB8 1545702 species 158 1 0 species 2099789 Lactobacillus sp. CBA3606 0 1 182 Lactobacillus sp. CBA3605 2099788 species 1 236 0 species 2108362 Lactobacillus sp. D1501 1 270 0 species 1600 Lactobacillus acetotolerans 0 1 190 Lactobacillus jensenii 109790 species 0 424 1 Lactobacillus gasseri 1596 species 0 432 1 Lactobacillus johnsonii 33959 species 0 1 370 Lactobacillus amylovorus 1604 species 0 1 582 Lactobacillus delbrueckii 1584 species Lactobacillus gallinarum species 52242 0 130 1 0 1396 3 genus 2767842 0 1 190 Lactobacillus paraplantarum species 60520 235 1 0 species 1589 Lactobacillus pentosus 971 1 0 species 1590 Lactobacillus plantarum 2767892 genus 156 1 0 156 1 0 species 240427 Lactobacillus paracollinoides genus 2767876 0 437 1 0 1 437 Lactobacillus amylophilus 1603 species 3 1473 0 genus 2759736 0 1 578 Lactobacillus casei 1582 species 0 376 1 Lactobacillus rhamnosus 47715 species 1597 species Lactobacillus paracasei 519 1 0 2 660 0 genus 2767889 1610 species Lactobacillus coryniformis 449 1 0 1 211 0 375175 species Lactobacillus backii 2 238 0 2767881 genus Lactobacillus sanfranciscensis 1625 species 0 1 108 0 130 1 Lactobacillus lindneri species 53444 494 3 0 genus 2767893 Lactobacillus buchneri species 1581 0 158 1 species 152331 Lactobacillus parabuchneri 160 1 0 Lactobacillus curieae 1138822 species 0 1 176 2767885 genus 2 708 0 Lactobacillus sakei 1599 species 0 1 359 Lactobacillus curvatus species 28038 0 349 1 1 Bacillales 161 1385 order 0 109240 257 133 186817 family 1 Bacillaceae 114 51709 0 0 336 1 genus 459532 species 586416 Terribacillus aidingensis 1 336 0 487 1 0 genus 175304 0 1 487 Lentibacillus amyloliquefaciens 1472767 species 32902 58 0 genus 1386 1242 Bacillus 1 species group 1792192 308 1 0 species 293387 Bacillus altitudinis 1 308 0 Bacillus flexus species 86664 0 295 1 0 1 470 Bacillus cellulosilyticus species 1413 412384 species Bacillus aryabhattai 1 458 0 Bacillus gibsonii 79881 species 0 93 1 0 19 4797 185979 no rank 1941347 species Bacillus sp. 275 165 1 0 2009331 species Bacillus sp. MD-5 1 123 0 species 1127744 Bacillus sp. JS 105 1 0 0 1 166 Bacillus sp. LM 4-2 1628753 species species 1856406 Bacillus sp. H15-1 427 1 0 0 1 160 Bacillus sp. YP1 species 1574141 427 1 0 species 2026248 Bacillus sp. 1s-1 species 756828 Bacillus sp. WP8 1 318 0 1827146 species Bacillus sp. IHB B 7164 1 440 0 1837130 species Bacillus sp. FJAT-14266 366 1 0 1409 species Bacillus sp. (in: Bacteria) 1 181 0 1774743 species Bacillus sp. SDLI1 309 1 0 0 440 1 Bacillus sp. 1NLA3E species 666686 0 1 161 Bacillus sp. Pc3 1446792 species 0 147 1 Bacillus sp. SJ-10 563169 species 245 1 0 species 98228 Bacillus sp. OxB-1 1 103 0 species 2049935 Bacillus sp. Lzh-5 Bacillus sp. X1(2014) 1565991 species 0 405 1 109 1 0 species 1570330 Bacillus sp. BH072 Bacillus megaterium species 1404 0 1 1178 species 1547283 Bacillus weihaiensis 444 1 0 Bacillus methanolicus species 1471 0 446 1 Bacillus pumilus 1408 species 0 1 1393 338 1 0 species 632773 Bacillus beveridgei Bacillus coagulans species 1398 0 1 1147 1 623 0 561879 species Bacillus safensis 397 1 0 species 1664069 Bacillus glycinifermentans 324767 species Bacillus infantis 1 424 0 0 1 351 Bacillus cohnii 33932 species 0 1 273 Bacillus xiamenensis species 1178537 653685 species group 9 5838 0 1402 species Bacillus licheniformis 583 1 0 1423 species Bacillus subtilis 1 2211 0 3 1722 0 species subgroup 1938374 0 1 659 Bacillus velezensis 492670 species 1 756 0 species 1390 Bacillus amyloliquefaciens 307 1 0 species 659243 Bacillus siamensis 0 19 1 Bacillus vallismortis species 72361 Bacillus sonorensis species 119858 0 1 320 Bacillus paralicheniformis species 1648923 0 1 481 1 502 0 1452 species Bacillus atrophaeus Bacillus horikoshii 79883 species 0 357 1 11338 10 0 86661 species group Bacillus cytotoxicus species 580165 0 1 458 0 360 1 Bacillus bombysepticus 658666 species 0 1 1319 Bacillus mycoides 1405 species 1 372 0 species 1392 Bacillus anthracis 3 1365 0 no rank 2750818 species 1839798 Bacillus sp. FDAARGOS_235 628 1 0 1892404 species Bacillus sp. ABP14 1 277 0 460 1 0 species 2053832 Bacillus sp. HBCD-sjtu 0 1 3686 Bacillus cereus species 1396 155322 species Bacillus toyonensis 1 300 0 3478 1 0 species 1428 Bacillus thuringiensis 0 390 1 Bacillus endophyticus 135735 species Bacillus smithii 1479 species 0 302 1 351195 genus 233 1 0 1230341 species Salimicrobium jeotgali 1 233 0 551 1 0 182709 genus species 182710 Oceanobacillus iheyensis 551 1 0 0 5 2004 2675234 genus 0 449 1 Bacillus pseudofirmus 79885 species species 86665 Bacillus halodurans 1 197 0 1 431 0 300825 species Bacillus lehensis 1 647 0 species 79880 Bacillus clausii 0 1 280 Bacillus krulwichiae species 199441 Anoxybacillus 1 genus 150247 13 0 6 1996 294699 species Anoxybacillus amylolyticus 1 288 0 no rank 2639704 0 861 2 Anoxybacillus sp. B2M1 species 1490052 0 1 496 species 1490057 Anoxybacillus sp. B7M1 365 1 0 Anoxybacillus flavithermus 33934 species 0 1 543 species 198467 Anoxybacillus gonensis 291 1 0 0 807 3 1 Halobacillus 2 45667 genus Halobacillus halophilus 1570 species 0 1 378 402384 species Halobacillus mangrovi 427 1 0 genus 1329200 2 753 0 Fictibacillus arsenicus species 255247 0 414 1 1221500 species Fictibacillus phosphorivorans 1 339 0 6 genus 400634 1 Lysinibacillus 2825 5 0 1 389 0 species 1145276 Lysinibacillus varians Lysinibacillus sphaericus 1421 species 0 1 1236 Lysinibacillus fusiformis 28031 species 0 1 662 2636778 no rank 0 532 1 532 1 0 species 2072025 Lysinibacillus sp. YS11 genus 2675229 897 2 0 Bacillus simplex species 1478 0 1 594 303 1 0 264697 species Bacillus muralis Virgibacillus 1 genus 84406 3 0 2163 7 Virgibacillus necropolis species 163877 0 1 401 Virgibacillus pantothenticus species 1473 0 329 1 1 295 0 2017483 species Virgibacillus phasianinus no rank 2620237 721 2 0 0 1 401 Virgibacillus sp. 6R species 1911587 403957 species Virgibacillus sp. SK37 320 1 0 0 1 414 Virgibacillus halodenitrificans 1482 species 950 2 0 2675230 genus 316 1 0 859143 species Bacillus kochii species 665099 Bacillus oceanisediminis 1 634 0 2 genus 1055323 1 Aeribacillus 2 464 0 Aeribacillus pallidus species 33936 0 1 462 1906945 genus 1 277 0 277 1 0 1426 species Parageobacillus thermoglucosidasius 0 3579 15 1 Geobacillus 139 genus 129337 species 129338 Geobacillus subterraneus 238 1 0 6 1301 0 no rank 2642459 0 96 1 Geobacillus sp. Y412MC52 550542 species Geobacillus sp. C56-T3 species 691437 0 263 1 Geobacillus sp. WCH70 species 471223 0 1 319 0 1 142 Geobacillus sp. Y412MC61 544556 species 1 351 0 581103 species Geobacillus sp. Y4.1MC1 Geobacillus sp. GHH01 1233873 species 0 130 1 1 211 0 33940 species Geobacillus thermodenitrificans 1099 4 0 species group 1505648 Geobacillus kaustophilus 1462 species 0 1 72 0 1 279 Geobacillus thermocatenulatus 33938 species 169283 species Geobacillus lituanicus 1 285 0 33941 species Geobacillus thermoleovorans 1 463 0 Geobacillus genomosp. 3 1921421 species 0 1 189 1 402 0 species 1422 Geobacillus stearothermophilus 29331 genus 0 1 352 0 1 352 Amphibacillus xylanus species 1449 0 41 13911 Staphylococcaceae 1 90964 family 551 1120 4 0 genus 69965 9 Macrococcus 1 Macrococcus canis 1855823 species 0 1 456 0 228 1 2619255 no rank species 1898474 Macrococcus sp. IME1552 1 228 0 Macrococcus caseolyticus species 69966 0 1 427 genus 2005363 139 1 0 0 139 1 Auricoccus indicus species 1849491 genus 45669 2 Salinicoccus 1 2 524 0 Salinicoccus halodurans species 407035 0 1 522 0 33 11577 Staphylococcus 1 genus 1279 254 1281 species Staphylococcus carnosus 216 1 0 0 1353 1 Staphylococcus aureus 1280 species 0 253 1 Staphylococcus cohnii species 29382 Staphylococcus sciuri species 1296 0 355 1 Staphylococcus lugdunensis 28035 species 0 1 280 Staphylococcus succinus species 61015 0 1 435 0 1 281 Staphylococcus piscifermentans species 70258 Staphylococcus xylosus species 1288 0 1 618 29388 species Staphylococcus capitis 1 278 0 species 985002 Staphylococcus argenteus 1 314 0 223 1 0 155085 species Staphylococcus lutrae 1 316 0 246432 species Staphylococcus equorum species 1282 Staphylococcus epidermidis 1 696 0 221 1 0 species 46127 Staphylococcus felis 0 1 143 Staphylococcus muscae 1294 species 0 1 334 Staphylococcus nepalensis species 214473 1 301 0 643214 species Staphylococcus stepanovicii 0 1 304 Staphylococcus kloosii 29384 species Staphylococcus saprophyticus 29385 species 0 1 276 0 1 328 Staphylococcus schleiferi 1295 species species 70255 Staphylococcus condimenti 1 249 0 no rank 91994 0 191 1 0 1 191 Staphylococcus sp. AntiMn-1 species 1715860 131 1 0 species 170573 Staphylococcus pettenkoferi 0 1 297 Staphylococcus warneri species 1292 species 45972 Staphylococcus pasteuri 1 770 0 Staphylococcus simulans species 1286 0 1 328 0 1 338 Staphylococcus hominis species 1290 300 1 0 species 985762 Staphylococcus agnetis Staphylococcus hyicus species 1284 0 1 169 0 1 280 Staphylococcus simiae species 308354 1 402 0 species 283734 Staphylococcus pseudintermedius Staphylococcus haemolyticus species 1283 0 1 343 7875 25 0 family 186818 21 Planococcaceae 1 1649 genus 1 375 0 2644826 no rank 1 375 0 Kurthia sp. 11kri321 1750719 species 0 375 1 3 genus 157226 1 Jeotgalibacillus 2 532 0 0 1 529 Jeotgalibacillus malaysiensis 1508404 species 9 1569 genus 1 Sporosarcina 2362 5 0 no rank 2647733 1149 2 0 0 1 589 Sporosarcina sp. P37 species 1930546 1930764 species Sporosarcina sp. P33 560 1 0 0 1 415 Sporosarcina psychrophila 1476 species 1 789 0 1571 species Sporosarcina ureae 12 3238 0 genus 1372 31 Planococcus 1 164 1 0 1215089 species Planococcus halocryophilus 0 467 2 2662419 no rank Planococcus sp. PAMC 21323 1526927 species 0 169 1 1 298 0 species 2058136 Planococcus sp. MB-3u-03 Planococcus kocurii 1374 species 0 1 246 195 1 0 1302659 species Planococcus sp. L10.15 1 278 0 species 200991 Planococcus rifietoensis 161360 species Planococcus antarcticus 270 1 0 Planococcus donghaensis 414778 species 0 347 1 0 1 617 Planococcus maritimus 192421 species 0 1 294 Planococcus faecalis 1598147 species Planococcus plakortidis 1038856 species 0 1 329 genus 648800 8 Solibacillus 1 3 1110 0 376 1 0 2637870 no rank 1 376 0 2048654 species Solibacillus sp. R5-41 species 76853 Solibacillus silvestris 726 1 0 0 1 237 648802 genus species 241244 Rummeliibacillus stabekisii 1 237 0 186822 family 53 Paenibacillaceae 1 45 27610 0 15 55080 genus 1 Brevibacillus 4 1590 0 567 1 0 1465 species Brevibacillus laterosporus 342 1 0 species 54913 Brevibacillus formosus Brevibacillus brevis 1393 species 0 666 1 619 3 0 no rank 85151 3 619 0 1 55079 genus 1 Aneurinibacillus 1 307 0 1500254 species Aneurinibacillus soli 311 1 0 2642329 no rank 0 1 311 Aneurinibacillus sp. XH2 1450761 species 145 genus 44249 1 Paenibacillus 24981 36 0 1464 species Paenibacillus larvae 795 1 0 species group 2044880 1 984 0 0 984 1 Paenibacillus riograndensis species 483937 868 1 0 414771 species Paenibacillus donghaensis Paenibacillus graminis species 189425 0 832 1 573 1 0 189426 species Paenibacillus odorifer 0 379 1 Paenibacillus swuensis 1178515 species species 1763538 Paenibacillus crassostreae 1 522 0 672 1 0 species 1870820 Paenibacillus ihbetae 0 999 1 Paenibacillus borealis species 160799 494 1 0 59893 species Paenibacillus peoriae Paenibacillus mucilaginosus 61624 species 0 629 1 0 1 560 Paenibacillus terrae 159743 species 1 660 0 1462996 species Paenibacillus yonginensis Paenibacillus beijingensis 1126833 species 0 469 1 185978 no rank 0 9146 13 Paenibacillus sp. FSL R5-0912 species 1536771 0 923 1 2069255 species Paenibacillus sp. lzh-N1 1 531 0 Paenibacillus sp. BIHB4019 species 1870819 0 1 608 Paenibacillus sp. FSL H7-0737 species 1536775 0 747 1 587 1 0 species 1536770 Paenibacillus sp. FSL R5-0345 0 1 636 Paenibacillus sp. Y412MC10 species 481743 Paenibacillus sp. FSL P4-0081 species 1536769 0 1005 1 453 1 0 1695218 species Paenibacillus sp. 32O-W Paenibacillus sp. FSL R7-0273 1536772 species 0 698 1 species 1536773 Paenibacillus sp. FSL R7-0331 1 926 0 0 273 1 Paenibacillus sp. IHBB 10380 1566358 species Paenibacillus sp. FSL H7-0357 species 1536774 0 1 989 324057 species Paenibacillus sp. JDR-2 1 770 0 169760 species Paenibacillus stellifer 574 1 0 800 1 0 species 44251 Paenibacillus durus Paenibacillus bovis species 1616788 0 667 1 0 1 477 Paenibacillus naphthalenovorans 162209 species Paenibacillus polymyxa 1406 species 0 1 2104 415 1 0 species 365617 Paenibacillus sabinae 0 1 722 Paenibacillus xylanexedens 528191 species Paenibacillus kribbensis species 172713 0 495 1 0 367 1 76632 genus 367 1 0 species 377615 Thermobacillus composti 4 319 0 family 186824 2 Thermoactinomycetaceae 1 292635 genus Laceyella 12 1 0 0 305 2 Novibacillus 1 genus 1677050 5 Novibacillus thermophilus species 1471761 0 1 300 17 family 186823 1 Alicyclobacillaceae 9 1380 0 4 432330 genus 1 Tumebacillus 516 3 0 Tumebacillus avium 1903704 species 0 267 1 1 245 0 1214604 species Tumebacillus algifaecis Kyrpidia 1 genus 1129704 12 0 3 377 0 242 1 Kyrpidia tusciae 33943 species Kyrpidia sp. EA-1 species 2055160 0 123 1 genus 29330 9 Alicyclobacillus 1 2 470 0 0 1 461 Alicyclobacillus acidocaldarius species 405212 186821 family 1 Sporolactobacillaceae 1 521 2 0 663587 no rank 1 520 0 0 520 1 [Bacillus] selenitireducens 85683 species 8 3884 0 family 186820 10 Listeriaceae 1 Listeria 1 genus 1637 9 0 6 3264 407 1 0 species 1640 Listeria seeligeri 1380 1 0 species 1639 Listeria monocytogenes 0 1 524 Listeria ivanovii species 1638 Listeria innocua 1642 species 0 393 1 1643 species Listeria welshimeri 1 551 0 genus 2755 0 1 610 0 1 610 Brochothrix thermosphacta species 2756 0 8 1870 539002 no rank no rank 539738 1 396 0 genus 1378 0 1 396 0 1 396 2624949 no rank Gemella sp. oral taxon 928 1785995 species 0 396 1 7 1474 0 no rank 539742 0 1474 7 Exiguobacterium 1 33986 genus 22 0 286 1 Exiguobacterium antarcticum 132920 species Exiguobacterium sibiricum 332410 species 0 328 1 838 4 0 2644629 no rank Exiguobacterium sp. U13-1 1849031 species 0 263 1 Exiguobacterium sp. AT1b 360911 species 0 1 195 1224749 species Exiguobacterium sp. ZWU0009 1 262 0 1 118 0 species 1399115 Exiguobacterium sp. MH3 72 186801 class 1 Clostridia 2379270 196 0 1 Thermoanaerobacterales 7 order 68295 0 31 7237 305 1 0 543372 family 252965 genus 1 305 0 252966 species Mahella australiensis 305 1 0 1 118 0 family 227387 genus 227388 1 118 0 118 1 0 184064 species Thermodesulfobium narugense Thermoanaerobacteraceae 1 family 186814 3 0 15 3734 no rank 42857 0 531 2 122 1 0 42837 genus 0 1 122 Ammonifex degensii 42838 species 1 409 0 44260 genus 1525 species Moorella thermoacetica 409 1 0 genus 140458 285 1 0 species 85874 Thermacetogenium phaeum 1 285 0 genus 129957 0 246 1 0 1 246 Carboxydothermus hydrogenoformans species 129958 334 1 0 249529 genus species 911092 Caldanaerobacter subterraneus 334 1 0 9 2335 0 84 genus 1754 1 Thermoanaerobacter Thermoanaerobacter pseudethanolicus species 496866 0 1 286 583357 species Thermoanaerobacter mathranii 1 249 0 286 1 0 29323 species Thermoanaerobacter brockii 1 278 0 108150 species Thermoanaerobacter italicus no rank 2636821 2 542 0 Thermoanaerobacter sp. X514 species 399726 0 260 1 0 1 282 Thermoanaerobacter sp. X513 species 573062 species 46354 Thermoanaerobacter wiegelii 1 335 0 Thermoanaerobacter kivui species 2325 0 275 1 0 3073 13 Thermoanaerobacterales Family III. Incertae Sedis 1 family 543371 6 3 1008 0 28895 genus 5 Thermoanaerobacterium 1 1 705 0 species 1517 Thermoanaerobacterium thermosaccharolyticum Thermoanaerobacterium xylanolyticum species 29329 0 1 298 1 Caldicellulosiruptor 14 genus 44000 0 2059 9 1 321 0 44001 species Caldicellulosiruptor saccharolyticus Caldicellulosiruptor lactoaceticus species 52766 0 288 1 Caldicellulosiruptor owensensis 55205 species 0 271 1 Caldicellulosiruptor kristjanssonii species 52765 0 1 282 0 1 214 Caldicellulosiruptor hydrothermalis species 413888 245 1 0 species 31899 Caldicellulosiruptor bescii species 413889 Caldicellulosiruptor kronotskyensis 235 1 0 717609 species Caldicellulosiruptor obsidiansis 189 1 0 1 Clostridiales 3023 order 186802 0 2369090 150 186804 family 38 Peptostreptococcaceae 1 34382 8 0 no rank 1411023 0 377 1 2081703 species Peptostreptococcaceae bacterium oral taxon 929 1 377 0 0 913 1 44259 genus 913 1 0 143361 species Filifactor alocis 2451 1 0 genus 1849828 species 1505 Paeniclostridium sordellii 2451 1 0 1481960 genus 398 1 0 1731 species Peptoclostridium acidaminophilum 398 1 0 1870884 genus 30 Clostridioides 1 2 29908 0 1496 species Clostridioides difficile 29878 1 0 genus 186831 1 297 0 297 1 0 1511 species Acetoanaerobium sticklandii 6340 3 0 12 990719 family 1 Christensenellaceae 2 6328 0 990721 genus 35 Christensenella 1 1805714 species Christensenella massiliensis 6293 1 0 family 2304686 7513 10 0 1 949 0 genus 2304693 0 949 1 [Clostridium] thermosuccinogenes 84032 species 1637257 genus 0 1 667 Mageeibacillus indolicus 884684 species 0 667 1 1 Ruminiclostridium 28 1508657 genus 0 1095 2 1521 species [Clostridium] cellulolyticum 1067 1 0 2305130 no rank 0 1 1846 1846 1 0 species 1834198 Ruminiclostridium sp. KB18 0 643 1 2304691 genus 1510 species [Clostridium] stercorarium 1 643 0 0 1 205 genus 236752 236753 species Fastidiosipila sanguinis 1 205 0 3 2108 0 genus 2304692 1 547 0 1677857 species Herbivorax saccincola 0 1 752 [Clostridium] clariflavum species 288965 Ruminiclostridium thermocellum 1515 species 0 809 1 0 2 336 family 68298 0 97 1 genus 129001 1 97 0 species 86170 Syntrophothermus lipocalidus 0 1 239 genus 862 Syntrophomonas wolfei species 863 0 1 239 Peptococcaceae 1 186807 family 61 0 28 10488 0 2 327 Thermincola 1 278993 genus 11 species 863643 Thermincola potens 316 1 0 560 1 0 2282742 genus species 58138 Desulfotomaculum acetoxidans 560 1 0 2 784 0 2 genus 51514 1 Dehalobacterium Dehalobacterium formicoaceticum 51515 species 0 1 782 51196 genus 1 462 0 1 462 0 species 51197 Syntrophobotulus glycolicus 1 Desulfotomaculum 5 1562 genus 0 5 1899 0 1 664 Desulfotomaculum ruminis species 1564 Desulfotomaculum ferrireducens species 1833852 0 518 1 59610 species Desulfotomaculum reducens 1 349 0 0 363 1 Desulfotomaculum nigrificans 1565 species 536 1 0 genus 2282740 species 102134 Desulfotomaculum gibsoniae 1 536 0 0 5 2539 Desulfitobacterium 1 genus 36853 39 Desulfitobacterium metallireducens species 142877 0 365 1 species 36854 Desulfitobacterium dehalogenans 1 554 0 927 1 0 49338 species Desulfitobacterium hafniense Desulfitobacterium dichloroeliminans species 233055 0 1 654 1 Dehalobacter 5 56112 genus 0 4 1611 species 55583 Dehalobacter restrictus 469 1 0 2 1137 0 no rank 2635733 Dehalobacter sp. CF species 1131462 0 1 544 Dehalobacter sp. DCA 1147129 species 0 1 593 4 1573 0 11 79206 genus 1 Desulfosporosinus Desulfosporosinus meridiei species 79209 0 1 466 Desulfosporosinus acidiphilus 885581 species 0 1 551 species 1563 Desulfosporosinus orientis 545 1 0 Candidatus Desulforudis 1 471826 genus 5 0 136 2 471827 species Candidatus Desulforudis audaxviator 131 1 0 family 543349 3 Symbiobacteriaceae 1 231 2 0 2733 genus 0 228 1 1 228 0 2734 species Symbiobacterium thermophilum family 31984 841 2 0 Heliobacterium 1 2697 genus 28 0 841 2 0 813 1 Heliobacterium modesticaldum species 35701 0 22989 9 538999 no rank 1 15686 0 genus 2717089 1 15686 0 species 2086584 Mordavella sp. Marseille-P3756 2 5691 0 39 1392389 genus 1 Intestinimonas 0 5652 1 Intestinimonas butyriciproducens species 1297617 0 3 256 1 Clostridiales Family XVII. Incertae Sedis 2 family 539000 73918 genus 11 Thermaerobacter 1 254 2 0 Thermaerobacter marianensis species 73919 0 243 1 Clostridiales Family XIII. Incertae Sedis 1 543314 family 4 0 3 1356 641 1 0 86331 genus Mogibacterium diversum 114527 species 0 1 641 0 711 1 [Eubacterium] sulci 143393 species family 31979 61 Clostridiaceae 1 53407 39 0 1 genus 49082 1 Candidatus Arthromitus 4 796 0 3 795 0 2638829 no rank 0 294 1 Candidatus Arthromitus sp. SFB-rat-Yit species 1041504 0 249 1 Candidatus Arthromitus sp. SFB-mouse-NL 1508644 species 1 252 0 49118 species Candidatus Arthromitus sp. SFB-mouse 1981033 genus Mordavella 1 32 0 genus 114627 1022 2 0 species 208226 Alkaliphilus metalliredigens 490 1 0 species 461876 Alkaliphilus oremlandii 532 1 0 30 50612 0 genus 1485 220 Clostridium 1 2614128 no rank 6755 2 0 0 1 1332 Clostridium sp. BNL1100 755731 species 1 5423 0 species 1042156 Clostridium sp. SY8519 1 609 0 species 238834 Clostridium estertheticum 1123 1 0 species 217159 Clostridium carboxidivorans species 1492 Clostridium butyricum 2550 1 0 766 1 0 84022 species Clostridium aceticum 415 1 0 1497 species Clostridium formicaceticum 0 1 2671 Clostridium beijerinckii 1520 species 46867 species Clostridium chauvoei 2035 1 0 0 1 794 Clostridium novyi 1542 species 1691 1 0 species 394958 Clostridium taeniosporum 0 1572 1 Clostridium cellulovorans species 1493 Clostridium perfringens species 1502 0 3930 1 Clostridium kluyveri species 1534 0 1226 1 Clostridium baratii species 1561 0 2554 1 0 924 1 Clostridium tetani species 1513 1548 species Clostridium scatologenes 1 1141 0 Clostridium cochlearium 1494 species 0 1 568 1216932 species Clostridium bornimense 977 1 0 species 169679 Clostridium saccharobutylicum 1616 1 0 1 768 0 84023 species Clostridium autoethanogenum Clostridium ljungdahlii 1538 species 0 1 722 1 1426 0 species 29341 Clostridium argentinense 1519 species Clostridium tyrobutyricum 1 467 0 0 637 1 Clostridium acetobutylicum species 1488 0 1619 1 Clostridium pasteurianum 1501 species 7754 1 0 1491 species Clostridium botulinum 1 2308 0 species 36745 Clostridium saccharoperbutylacetonicum 1 774 0 species 1509 Clostridium sporogenes 390805 genus 0 884 1 0 1 884 Geosporobacter ferrireducens 1424294 species 0 1508 3 Oscillospiraceae 1 216572 family 1 1507 2 0 5 genus 459786 1 Oscillibacter 351091 species Oscillibacter valericigenes 1502 1 0 1 Lachnospiraceae 140 family 186803 0 2119676 26 genus 1663717 1 2144 0 2144 1 0 species 1679721 Herbinix luporum 28050 genus 1676892 1 0 0 1 1676892 [Eubacterium] eligens species 39485 63665 4 0 1506553 genus 108 Lachnoclostridium 1 Lachnoclostridium phytofermentans 66219 species 0 1 2969 no rank 2608895 1 47701 0 species 1834196 Lachnoclostridium sp. YL32 1 47701 0 species 1871021 Lachnoclostridium phocaeense 12887 1 0 6603 3 0 45 830 genus 1 Butyrivibrio 3291 1 0 species 185008 Butyrivibrio hungatei Butyrivibrio proteoclasticus species 43305 0 1 3267 1 Anaerotignum 1 2039240 genus 0 2 1195 0 1 1194 Anaerotignum propionicum species 28446 genus 207244 16 Anaerostipes 1 69748 2 0 Anaerostipes hadrus species 649756 0 69732 1 0 24320 1 2569097 genus 0 1 24320 [Eubacterium] hallii species 39488 1 Blautia 17 genus 572511 0 43807 3 0 1 21481 no rank 2648079 species 1796616 Blautia sp. YL58 21481 1 0 Blautia hansenii species 1322 0 1 22309 0 1 46197 genus 2719313 208479 species [Clostridium] bolteae 46197 1 0 8784 1 0 2719231 genus 84030 species [Clostridium] saccharolyticum 8784 1 0 1234 2 0 genus 698776 1 Cellulosilyticum 1 0 1 1233 Cellulosilyticum lentocellum 29360 species 2 81130 0 genus 841 6 Roseburia 1 301301 species Roseburia hominis 81124 1 0 186928 no rank 2 93817 0 0 91506 1 [Eubacterium] rectale species 39491 1 2311 0 712991 species Lachnospiraceae bacterium oral taxon 500 Eubacteriaceae 1 186806 family 2 0 5 7861 1 33951 genus 1 Acetobacterium 2 504 0 1 503 0 species 33952 Acetobacterium woodii 7355 2 0 42 genus 1730 1 Eubacterium species 1736 Eubacterium limosum 7313 1 0 0 100495 12 Ruminococcaceae 1 family 541000 75 1 Ethanoligenens 1 253238 genus 0 962 2 Ethanoligenens harbinense 253239 species 0 961 1 5 genus 1263 1 Ruminococcus 2680 3 0 species 1160721 Ruminococcus bicirculans 1 1868 0 0 1 807 Ruminococcus albus species 1264 2305133 no rank 1 1236 0 1236 1 0 species 1572656 Ruminococcaceae bacterium CPB6 2 18487 0 216851 genus 31 Faecalibacterium 1 853 species Faecalibacterium prausnitzii 1 18456 0 2 genus 946234 1 Flavonifractor 2 76655 0 species 292800 Flavonifractor plautii 76653 1 0 400 1 0 552397 no rank 0 1 400 [Clostridium] cellulosi species 29343 Halanaerobiales 1 order 53433 2 0 1640 10 0 549 5 Halobacteroidaceae 1 family 53434 2 1 Acetohalobium 1 genus 28186 0 231 2 1 230 0 species 28187 Acetohalobium arabaticum Halobacteroides 1 42417 genus 3 0 316 2 1 313 0 42422 species Halobacteroides halobius Halanaerobiaceae 1 972 family 1 0 1089 4 genus 32636 0 395 1 31909 species Halothermothrix orenii 1 395 0 2 693 0 genus 2330 0 251 1 Halanaerobium praevalens 2331 species Halanaerobium hydrogeniformans 656519 species 0 442 1 order 485256 0 2 416 0 416 2 1 Natranaerobiaceae 1 family 485255 0 1 415 375928 genus 0 415 1 Natranaerobius thermophilus species 375929 order 2770089 0 815 2 285 1 0 family 2770093 291988 genus 1 285 0 Thermosediminibacter oceani 291990 species 0 285 1 1 530 0 2770092 family 499228 genus 0 530 1 Tepidanaerobacter acetatoxydans 499229 species 0 530 1 Erysipelotrichia 1 class 526524 4 0 10 142318 order 526525 1 Erysipelotrichales 1 142314 9 0 1 Erysipelotrichaceae 34 128827 family 0 142313 8 1456 2 0 21 genus 191303 1 Turicibacter no rank 2638206 1 1435 0 species 1712675 Turicibacter sp. H121 1435 1 0 0 3 1051 1 Erysipelothrix 20 1647 genus 1514105 species Erysipelothrix larvae 519 1 0 Erysipelothrix rhusiopathiae species 1648 0 512 1 1 1067 0 1729679 genus 0 1067 1 Faecalibaculum rodentium 1702221 species 544447 no rank 0 1 138705 138705 1 0 species 1834207 Erysipelotrichaceae bacterium I46 0 229 1 84086 no rank 0 229 1 endosymbiont 'TC1' of Trimyema compressum 243899 species class 1737404 4745 13 0 189 1 0 no rank 1737407 genus 1582879 189 1 0 189 1 0 1852374 species Ezakiella massiliensis 1 Tissierellales 36 order 1737405 0 4556 12 929 family 1570339 1 Peptoniphilaceae 10 4029 0 543311 genus 6 Parvimonas 1 2 789 0 1 783 0 species 33033 Parvimonas micra genus 162289 1 Peptoniphilus 1 320 2 0 no rank 2637196 1 319 0 Peptoniphilus sp. ING2-D1G 1912856 species 0 1 319 1161127 genus 0 1 1047 1852373 species Murdochiella vaginalis 1 1047 0 0 2 470 165779 genus 288 1 0 species 1870984 Anaerococcus mediterraneensis 1 182 0 33034 species Anaerococcus prevotii 1 Finegoldia 3 150022 genus 0 2 474 1260 species Finegoldia magna 1 471 0 1 491 0 2042895 family genus 1505664 1 491 0 1 491 0 1556 species Gottschalkia acidurici 0 240 5 1 Limnochordia 2 1676648 class 0 4 238 1 Limnochordales 2 order 1676649 4 family 1676650 1 Limnochordaceae 3 236 0 232 2 0 genus 1676651 2 Limnochorda 1 1555112 species Limnochorda pilosa 230 1 0 33974 no rank 327 1 0 327 1 0 1930845 genus 0 1 327 Ndongobacter massiliensis species 1871025 0 312934 31 Negativicutes 1 class 909932 12 1 Acidaminococcales 11 1843488 order 0 6597 5 Acidaminococcaceae 1 family 909930 31 0 4 6586 3 6555 0 20 904 genus 1 Acidaminococcus species 187327 Acidaminococcus intestini 1841 1 0 4694 1 0 species 905 Acidaminococcus fermentans Selenomonadales 1 909929 order 27 0 14 9662 0 7791 9 Selenomonadaceae 1 1843491 family 55 6516 6 0 9 genus 970 1 Selenomonas Selenomonas sputigena species 69823 0 1 978 species 971 Selenomonas ruminantium 1 2573 0 0 2956 3 no rank 2637378 Selenomonas sp. oral taxon 920 1884263 species 0 1 898 883 1 0 713030 species Selenomonas sp. oral taxon 136 712538 species Selenomonas sp. oral taxon 478 1 1175 0 0 2 1220 1 Megamonas 2 genus 158846 0 1 1218 Megamonas hypermegale 158847 species 4 1843490 family 1 Sporomusaceae 1844 4 0 1840 3 0 genus 365348 27 Pelosinus 1 888 1 0 no rank 2629460 484770 species Pelosinus sp. UFO1 888 1 0 365349 species Pelosinus fermentans 925 1 0 229 1843489 order 1 Veillonellales 11 296663 0 296434 10 0 31977 family 392 Veillonellaceae 1 7 909928 genus 1 Negativicoccus 2 2103 0 1 2096 0 species 1702287 Negativicoccus massiliensis 49 29465 genus 1 Veillonella 3 270582 0 species 29466 Veillonella parvula 253086 1 0 1 17447 0 248315 species Veillonella rodentium 0 10079 2 Megasphaera 1 906 genus 8 10071 1 0 907 species Megasphaera elsdenii 17 genus 39948 1 Dialister 2 13278 0 13261 1 0 species 39950 Dialister pneumosintes 0 32 4803 1297 phylum 44 188787 class 1 Deinococci 4803 32 0 0 15 2291 1 Thermales 20 order 68933 14 2271 0 family 188786 7 Thermaceae 1 208447 genus 1 208 0 1 208 0 187137 species Oceanithermus profundus Thermus 1 genus 270 14 0 8 1406 643 1 0 species 274 Thermus thermophilus 0 1 132 Thermus scotoductus 37636 species species 56957 Thermus oshimai 1 130 0 1 122 0 species 56956 Thermus brockianus 0 1 178 Thermus parvatiensis 456163 species 1 63 0 2619321 no rank Thermus sp. CCB_US3_UF1 species 1111069 0 63 1 0 124 1 Thermus aquaticus 271 species 1 Marinithermus 11 genus 186191 0 124 2 species 186192 Marinithermus hydrothermalis 113 1 0 526 2 0 genus 65551 Meiothermus ruber species 277 0 124 1 402 1 0 52022 species Meiothermus silvanus 118964 order 14 Deinococcales 1 2353 15 0 0 2339 14 1 Deinococcaceae 13 183710 family 0 2326 13 Deinococcus 1 genus 1298 16 species 309887 Deinococcus maricopensis 241 1 0 1 161 0 502394 species Deinococcus gobiensis 1299 species Deinococcus radiodurans 1 214 0 1 177 0 432329 species Deinococcus peraridilitoris 0 169 1 Deinococcus deserti species 310783 1768108 species Deinococcus actinosclerus 94 1 0 Deinococcus puniceus species 1182568 0 146 1 153 1 0 species 1309411 Deinococcus soli Cha et al. 2016 species 1182571 Deinococcus swuensis 268 1 0 1 439 0 55148 species Deinococcus proteolyticus 0 115 1 2623546 no rank 2080419 species Deinococcus sp. NW-56 1 115 0 133 1 0 68909 species Deinococcus geothermalis order 2762275 0 1 115 0 115 1 332247 family genus 332248 1 115 0 1 115 0 species 332249 Truepera radiovictrix 66 1 0 no rank 1859062 262406 genus 0 66 1 0 1 66 Thermobaculum terrenum 166501 species phylum 67819 141 1 0 class 1663419 0 1 141 0 141 1 order 1663425 family 1663426 0 1 141 0 1 141 genus 1005038 1 141 0 1005039 species Fimbriimonas ginsengisoli Actinobacteria 1 201174 phylum 35 0 289113 590 0 27 16067 1 Coriobacteriia 175 class 84998 0 2425 12 1 Coriobacteriales 50 order 84999 125 84107 family 1 Coriobacteriaceae 5 1011 0 1 231 0 no rank 84113 Coriobacteriaceae bacterium 68-1-3 species 1531429 0 231 1 33870 genus 0 168 1 1 168 0 species 33871 Coriobacterium glomerans 1 Collinsella 2 102106 genus 0 487 2 species 74426 Collinsella aerofaciens 1 485 0 1364 6 0 36 family 1643824 1 Atopobiaceae 0 986 4 Olsenella 1 genus 133925 3 133926 species Olsenella uli 1 177 0 no rank 2638792 0 1 327 0 1 327 Olsenella sp. oral taxon 807 species 712411 species 1805478 Olsenella sp. Marseille-P2300 1 479 0 2767353 genus 0 342 1 0 342 1 Atopobium parvulum species 1382 0 14 13467 1 Eggerthellales 125 order 1643822 Eggerthellaceae 1 family 1643826 1576 0 13342 13 447020 genus 1 672 0 446660 species Adlercreutzia equolifaciens 672 1 0 3 885 0 1 genus 644652 1 Gordonibacter 1 380 0 species 1841863 Gordonibacter massiliensis 0 504 1 Gordonibacter urolithinfaciens 1335613 species genus 84162 0 222 1 0 1 222 Cryptobacterium curtum 84163 species 0 3787 1 genus 1981050 0 3787 1 Phoenicibacter massiliensis 1944646 species 84108 genus 0 1 921 0 1 921 Slackia heliotrinireducens species 84110 0 2 298 Denitrobacterium 1 79603 genus 2 79604 species Denitrobacterium detoxificans 296 1 0 1 Eggerthella 15 84111 genus 0 4981 3 0 1 277 no rank 2648737 species 502558 Eggerthella sp. YY7918 1 277 0 0 1 4689 Eggerthella lenta species 84112 no rank 1752188 0 198 4 Actinobacteria bacterium IMCC26103 1848756 species 0 19 1 0 118 1 Actinobacteria bacterium IMCC26077 species 1848755 Actinobacteria bacterium IMCC25003 1848255 species 0 19 1 1 42 0 species 1848754 Actinobacteria bacterium IMCC19121 128 4 0 1497346 class 0 4 128 Solirubrobacterales 1 order 588673 3 1 Conexibacteraceae 1 320583 family 0 3 125 14 genus 191494 1 Conexibacter 2 124 0 0 110 1 Conexibacter woesei species 191495 84992 class 0 201 4 4 201 0 15 order 84993 1 Acidimicrobiales 1 Acidimicrobiaceae 9 84994 family 0 2 82 genus 53634 1 73 0 0 73 1 Acidimicrobium ferrooxidans 53635 species 2448023 family 0 1 104 genus 682522 1 104 0 Ilumatobacter coccineus 467094 species 0 1 104 272161 546 0 795 1760 class 1 Actinobacteria 126 21610 0 85006 order 99 Micrococcales 1 0 87 2 family 145360 Sanguibacter 1 60919 genus 1 0 2 87 species 60920 Sanguibacter keddieii 86 1 0 35 14985 0 103 family 1268 1 Micrococcaceae 1742989 genus 0 1 347 0 1 347 Glutamicibacter arilaitensis 256701 species 0 718 4 Pseudarthrobacter 1 1742993 genus 3 Pseudarthrobacter phenanthrenivorans species 361575 0 219 1 species 85085 Pseudarthrobacter chlorophenolicus 1 211 0 1 285 0 121292 species Pseudarthrobacter sulfonivorans 1 Paenarthrobacter 5 1742992 genus 0 2 275 43663 species Paenarthrobacter aurescens 270 1 0 genus 1645 0 57 1 1 57 0 species 1646 Renibacterium salmoninarum 0 1 41 genus 2078575 species 1618207 Arthrobacter sp. IHBB 11108 41 1 0 1663 genus 35 Arthrobacter 1 3408 15 0 species 656366 Arthrobacter alpinus 1 374 0 1 282 0 species 37928 Arthrobacter crystallopoietes 0 12 2717 235627 no rank 1 145 0 1806905 species Arthrobacter sp. ZXY-2 213 1 0 species 1690248 Arthrobacter sp. LS16 0 1 275 Arthrobacter sp. U41 1849032 species 314 1 0 2020486 species Arthrobacter sp. YN 1 245 0 1494608 species Arthrobacter sp. PAMC 25486 0 163 1 Arthrobacter sp. YC-RL1 1652545 species Arthrobacter sp. Rue61a species 1118963 0 145 1 0 1 185 Arthrobacter sp. PGP41 2079227 species Arthrobacter sp. QXT-31 species 1357915 0 392 1 0 163 1 Arthrobacter sp. ATCC 21022 species 1771959 1 205 0 species 1704044 Arthrobacter sp. ERGS1:01 272 1 0 290399 species Arthrobacter sp. FB24 596707 genus 202 1 0 1 202 0 species 37927 Sinomonas atrocyanea 0 100 1 1269 genus 0 100 1 Micrococcus luteus species 1270 1 Rothia 1 genus 32207 0 3 9376 Rothia mucilaginosa species 43675 0 9130 1 1 245 0 species 2047 Rothia dentocariosa 5 genus 57493 1 Kocuria 4 291 0 446860 species Kocuria flava 1 130 0 species 71999 Kocuria palustris 100 1 0 0 1 56 Kocuria rhizophila species 72000 genus 1868332 0 1 67 556325 species Neomicrococcus aestuarii 67 1 0 85016 family 0 250 5 0 250 5 Cellulomonas 1 1707 genus 3 67 1 0 1711 species Cellulomonas flavigena species 1708 Cellulomonas fimi 1 74 0 2620175 no rank 0 1 57 0 57 1 Cellulomonas sp. PSBB021 species 2003551 Cellulomonas gilvus species 11 0 1 49 0 9 317 Intrasporangiaceae 1 family 85021 16 1 Serinicoccus 3 265976 genus 0 52 2 49 1 0 1758689 species Serinicoccus sp. JLT9 0 2 87 1 Intrasporangium 3 53357 genus 1 84 0 53358 species Intrasporangium calvum 80 2 0 genus 53457 9 Janibacter 1 71 1 0 species 857417 Janibacter indicus 2 82 0 4 genus 267408 1 Arsenicicoccus 78 1 0 no rank 2663846 1 78 0 1658671 species Arsenicicoccus sp. oral taxon 190 1 82 0 125316 family 0 1 82 84756 genus 1 82 0 species 84757 Beutenbergia cavernae 78 2 0 family 85018 1 genus 1862 1 Dermatophilus 2 78 0 0 77 1 Dermatophilus congolensis species 1863 Dermacoccaceae 1 family 145357 1 0 317 5 1 116 0 genus 745364 species 571913 Luteipulveratus mongoliensis 1 116 0 Dermacoccus 1 57495 genus 2 0 2 74 Dermacoccus nishinomiyaensis 1274 species 0 72 1 0 126 1 genus 57499 0 1 126 Kytococcus sedentarius species 1276 no rank 577468 74 1 0 0 1 74 genus 2038 2039 species Tropheryma whipplei 1 74 0 3 298 0 family 85019 1 Brevibacteriaceae 1 1 1696 genus 1 Brevibacterium 2 297 0 Brevibacterium linens 1703 species 0 1 296 Promicromonosporaceae 1 85017 family 23 0 494 8 254250 genus 4 Isoptericola 1 3 167 0 0 1 76 Isoptericola variabilis 139208 species 372663 species Isoptericola dokdonensis 87 1 0 genus 186188 0 1 84 186189 species Xylanimonas cellulosilytica 1 84 0 1 genus 157920 1 Cellulosimicrobium 220 3 0 1710 species Cellulosimicrobium cellulans 127 1 0 1 92 0 2624466 no rank Cellulosimicrobium sp. TH-20 species 1980001 0 92 1 family 85023 50 Microbacteriaceae 1 44 3523 0 1434032 genus 1 74 0 0 74 1 Pontimonas salivibrio species 1159327 1 138 0 genus 33877 Agromyces aureus 453304 species 0 138 1 447237 genus 0 63 1 1 63 0 2626248 no rank Frondihabitans sp. PAMC 28766 species 1795630 0 63 1 1 99 0 518733 genus 412690 species Microterricola viridarii 99 1 0 26 1 0 1705353 genus 1 26 0 708131 species Aurantimicrobium minutum 0 308 2 Leifsonia 1 110932 genus 2 species 1575 Leifsonia xyli 1 306 0 1 Rathayibacter 2 genus 33886 0 81 3 33888 species Rathayibacter tritici 1 43 0 0 36 1 Rathayibacter toxicus species 145458 0 3 118 no rank 1655488 clade 1655489 3 118 0 0 3 118 Rhodoluna 1 genus 529883 2 Candidatus Rhodoluna planktonica species 535712 0 71 1 45 1 0 species 529884 Rhodoluna lacicola 69578 genus 1 Cryobacterium 1 239 3 0 Cryobacterium arcticum 670052 species 0 128 1 2649013 no rank 0 110 1 110 1 0 1978566 species Cryobacterium sp. LW097 genus 337004 0 1 160 Microcella alkaliphila 279828 species 0 1 160 1 Clavibacter 9 genus 1573 0 6 425 0 5 416 1 Clavibacter michiganensis 61 28447 species subspecies 31964 Clavibacter sepedonicus 83 1 0 0 1 125 Clavibacter capsici subspecies 1874630 0 1 80 Clavibacter insidiosus subspecies 33014 0 1 67 Clavibacter nebraskensis subspecies 31963 0 1270 14 Microbacterium 1 genus 33882 33 species 2033 Microbacterium testaceum 1 68 0 1 70 0 species 36805 Microbacterium aurum 0 1 83 Microbacterium paludicola species 300019 93 1 0 species 84292 Microbacterium chocolatum 0 1 61 Microbacterium hominis 162426 species 0 862 8 no rank 2609290 0 68 1 Microbacterium sp. No. 7 species 1714373 0 58 1 Microbacterium sp. str. 'China' 2103230 species 1 86 0 species 1696072 Microbacterium sp. CGR1 Microbacterium sp. 1.5R species 1916917 0 1 86 0 1 74 Microbacterium sp. BH-3-3-3 1906742 species 1938334 species Microbacterium sp. TPU 3598 72 1 0 Microbacterium sp. XT11 species 367477 0 1 143 species 1795053 Microbacterium sp. PAMC 28756 1 275 0 2034 genus 3 Curtobacterium 1 418 4 0 257496 no rank 0 328 2 Curtobacterium sp. MR_MD2014 1561023 species 0 1 113 215 1 0 1905847 species Curtobacterium sp. BH-2-1-1 0 87 1 Curtobacterium pusillum 69373 species 0 54 2 Cnuibacter 1 genus 1759331 5 Cnuibacter physcomitrellae species 1619308 0 1 49 0 9 938 Dermabacteraceae 1 family 85020 2 genus 472568 124 1 0 0 1 124 Devriesea agamarum species 472569 0 47 1 genus 36739 47 1 0 species 1630135 Dermabacter vaginalis 0 6 765 1 Brachybacterium 3 43668 genus 1331682 species Brachybacterium ginsengisoli 1 178 0 105 1 0 2017485 species Brachybacterium sp. VR2415 0 1 193 2623841 no rank 1 193 0 species 1903186 Brachybacterium sp. P6-10-X1 Brachybacterium faecium species 43669 0 1 133 0 1 153 Brachybacterium sp. VM2412 2017484 species family 85022 68 1 0 0 68 1 43673 genus 68 1 0 species 43674 Jonesia denitrificans order 1643682 6 Geodermatophilales 1 308 7 0 20 family 85030 1 Geodermatophilaceae 6 302 0 68 2 0 38501 genus 1 Blastococcus 1 species 138336 Blastococcus saxobsidens 1 67 0 77 1 0 1860 genus Geodermatophilus obscurus species 1861 0 77 1 0 2 137 Modestobacter 1 genus 88138 1 species 477641 Modestobacter marinus 136 1 0 2937 29 0 15 order 85009 1 Propionibacteriales family 85015 28 Nocardioidaceae 1 971 11 0 0 1 106 2040 genus 0 1 106 Aeromicrobium erythreum species 2041 0 1 98 2044 genus 0 1 98 Pimelobacter simplex species 2045 4 415 0 genus 1839 11 Nocardioides 1 0 184 1 2615069 no rank 184 1 0 species 196162 Nocardioides sp. JS614 2045452 species Nocardioides sp. 78 1 168 0 0 1 52 Nocardioides dokdonensis species 450734 Micropruina 1 genus 116071 1 0 176 2 0 1 175 Micropruina glycogenica 75385 species Kribbella 1 182639 genus 3 0 2 148 0 145 1 Kribbella flavida 182640 species 13 family 31957 1 Propionibacteriaceae 1951 17 0 331 4 0 10 genus 1912216 1 Cutibacterium species 1747 Cutibacterium acnes 186 1 0 1 92 0 33010 species Cutibacterium avidum species 33011 Cutibacterium granulosum 43 1 0 203133 genus 0 110 1 2633994 no rank 0 110 1 species 1871034 Propionimicrobium sp. Marseille-P3275 110 1 0 3 1743 genus 1 Propionibacterium 276 3 0 Propionibacterium freudenreichii 1744 species 0 198 1 2608905 no rank 1 75 0 Propionibacterium sp. oral taxon 193 species 671223 0 75 1 664 5 0 72763 genus 16 Tessaracoccus 1 2635419 no rank 0 1 183 1909732 species Tessaracoccus sp. T2.5-30 1 183 0 1332264 species Tessaracoccus aquimaris 1 179 0 176 1 0 species 1610493 Tessaracoccus flavus 1 110 0 399497 species Tessaracoccus flavescens genus 1912215 0 1 166 1748 species Acidipropionibacterium acidipropionici 166 1 0 29404 genus 1 230 0 1 230 0 species 29405 Microlunatus phosphovorus genus 2801844 0 161 1 species 1750 Pseudopropionibacterium propionicum 161 1 0 0 188 1 1643684 order 85031 family 188 1 0 1 188 0 53460 genus 0 1 188 Nakamurella multipartita species 53461 3 185 0 414714 order 0 3 185 1 Catenulisporaceae 8 family 414877 0 177 2 Catenulispora 1 414878 genus 6 171 1 0 304895 species Catenulispora acidiphila 50 85011 order 1 Streptomycetales 82 15284 0 Streptomycetaceae 1 2062 family 128 0 15234 81 707 5 0 10 genus 2063 1 Kitasatospora Kitasatospora albolonga 68173 species 0 138 1 Kitasatospora setae 2066 species 0 1 168 2633591 no rank 201 1 0 Kitasatospora sp. MMS16-BH015 species 2018025 0 201 1 0 190 1 Kitasatospora aureofaciens 1894 species genus 1883 421 Streptomyces 1 14399 75 0 Streptomyces collinus 42684 species 0 1 248 0 1 132 Streptomyces violaceusniger species 68280 122 1 0 285473 species Streptomyces rubrolavendulae 0 120 1 Streptomyces formicae 1616117 species 629295 species group 2 320 0 1482558 species subgroup 0 1 121 1 121 0 species 1908 Streptomyces globisporus 199 1 0 1482596 species subgroup species 1911 Streptomyces griseus 199 1 0 0 173 1 Streptomyces glaucescens species 1907 species 1971 Streptomyces noursei 256 1 0 Streptomyces parvulus species 146923 0 98 1 24 3982 0 no rank 2593676 1 227 0 1972846 species Streptomyces sp. Sge12 0 1 151 Streptomyces sp. CdTB01 species 1725411 0 1 94 Streptomyces sp. S8 1837283 species 2094021 species Streptomyces sp. WAC00288 1 103 0 Streptomyces sp. CNQ-509 444103 species 0 131 1 169 1 0 species 1961713 Streptomyces sp. MOE7 0 1 118 Streptomyces sp. SirexAA-E 862751 species 1 78 0 1751294 species Streptomyces sp. 4F 0 236 1 Streptomyces sp. 769 species 1262452 1984801 species Streptomyces sp. CLI2509 71 1 0 species 1841249 Streptomyces sp. RTd22 308 1 0 1 184 0 species 1561022 Streptomyces sp. CCM_MD2014 1 128 0 species 1265601 Streptomyces sp. PAMC 26508 161 1 0 2059884 species Streptomyces sp. CMB-StM0423 169 1 0 1495638 species Streptomyces sp. M56 0 180 1 Streptomyces sp. SAT1 1849967 species Streptomyces sp. Tue 6075 1661694 species 0 1 146 Streptomyces sp. P3 2135430 species 0 232 1 species 1812480 Streptomyces sp. fd1-xmd 1 153 0 Streptomyces sp. FR-008 species 206662 0 1 159 Streptomyces sp. 3211 species 1964449 0 1 197 0 137 1 Streptomyces sp. TN58 234612 species 1649184 species Streptomyces sp. CFMR 7 1 189 0 0 1 261 Streptomyces sp. Mg1 465541 species 2049881 species Streptomyces sp. XZHG99 241 1 0 162 1 0 92644 species Streptomyces malaysiensis Streptomyces venezuelae species 54571 0 309 1 0 100 1 Streptomyces xinghaiensis 1038928 species 1477431 species group 0 2 325 42239 species Streptomyces sampsonii 147 1 0 1902 species Streptomyces coelicolor 1 178 0 128 1 0 1642299 species Streptomyces alfalfae species 68570 Streptomyces albulus 174 1 0 0 1 171 Streptomyces avermitilis species 33903 408015 species Streptomyces xiamenensis 137 1 0 1 611 0 1912 species Streptomyces hygroscopicus species 553510 Streptomyces gilvosporeus 1 177 0 120 1 0 species 1916 Streptomyces lividans species 68202 Streptomyces fulvissimus 97 1 0 Streptomyces lavendulae species 1914 0 136 1 Streptomyces scabiei species 1930 0 1 264 1 329 0 species 1888 Streptomyces albus species 362257 Streptomyces vietnamensis 160 1 0 species 1950 Streptomyces peucetius 99 1 0 0 194 1 Streptomyces leeuwenhoekii species 1437453 Streptomyces alboflavus species 67267 0 1 260 1 204 0 1783515 species Streptomyces sp. S10(2016) 131 1 0 38300 species Streptomyces pristinaespiralis 661 1 0 species 1969 Streptomyces chartreusis 127 1 0 1935 species Streptomyces violaceoruber Streptomyces albireticuli species 1940 0 119 1 Streptomyces reticuli 1926 species 0 1 131 Streptomyces lincolnensis 1915 species 0 1 173 species 68192 Streptomyces cyaneogriseus 133 1 0 212 1 0 29303 species Streptomyces cattleya 0 1 179 Streptomyces clavuligerus species 1901 0 1 251 Streptomyces griseochromogenes species 68214 Streptomyces puniciscabiei species 164348 0 1 195 178 1 0 species 1889 Streptomyces ambofaciens species 1169025 Streptomyces pratensis 1 130 0 Streptomyces lydicus species 47763 0 621 1 0 228 1 Streptomyces pactum 68249 species Streptomyces autolyticus 75293 species 0 149 1 0 213 1 Streptomyces niveus 193462 species Streptomyces pluripotens species 1355015 0 128 1 species 379067 Streptomyces bingchenggensis 1 170 0 3 177 0 85014 order 0 3 177 Glycomycetaceae 1 family 85034 1 2 176 0 1 genus 283810 1 Stackebrandtia Stackebrandtia nassauensis species 283811 0 1 175 85004 order 50 Bifidobacteriales 1 196702 25 0 196652 24 0 1451 family 31953 1 Bifidobacteriaceae 1 Bifidobacterium 291 genus 1678 0 19 194428 Bifidobacterium pseudocatenulatum species 28026 0 1 1193 1 168 0 species 33905 Bifidobacterium thermophilum 0 12037 1 Bifidobacterium bifidum 1681 species 1 220 0 1694 species Bifidobacterium pseudolongum 1 79 0 species 1691 Bifidobacterium indicum Bifidobacterium longum species 216816 0 1 136786 1 95 0 638619 species Bifidobacterium actinocoloniiforme 0 1 11352 Bifidobacterium breve species 1685 0 1 227 Bifidobacterium asteroides species 1684 species 1683 Bifidobacterium angulatum 1 260 0 1687 species Bifidobacterium coryneforme 47 1 0 28025 species Bifidobacterium animalis 1 246 0 species 1689 Bifidobacterium dentium 1 27663 0 1 968 0 species 1680 Bifidobacterium adolescentis 0 194 1 Bifidobacterium choerinum 35760 species 0 2286 2 Bifidobacterium catenulatum 1 1686 species 858 Bifidobacterium kashiwanohense subspecies 630129 0 1428 1 Bifidobacterium scardovii species 158787 0 1 316 Scardovia 1 196081 genus 1 0 227 2 78259 species Scardovia inopinata 1 226 0 0 388 1 genus 2701 Gardnerella vaginalis 2702 species 0 1 388 0 158 1 196082 genus 0 158 1 Parascardovia denticolens 78258 species 590 7 0 7 order 85013 1 Frankiales 74712 family 19 Frankiaceae 1 583 6 0 0 5 564 1 Frankia 6 1854 genus 1 82 0 species 1859 Frankia alni 0 1 125 Frankia casuarinae 106370 species 0 163 1 Frankia inefficax 298654 species 0 1 188 2632575 no rank 1 188 0 298653 species Frankia sp. EAN1pec 0 3 136 622450 order 136 3 0 family 622451 11 Actinopolysporaceae 1 0 2 125 Actinopolyspora 1 1849 genus 3 species 414996 Actinopolyspora erythraea 1 122 0 157 18263 0 order 85007 184 Corynebacteriales 1 0 72 2 family 316606 0 72 2 Segniliparus 1 286801 genus 2 70 1 0 species 286802 Segniliparus rotundus 2 85028 family 1 Tsukamurellaceae 3 214 0 2060 genus 2 212 0 1 174 0 57704 species Tsukamurella tyrosinosolvens 0 38 1 Tsukamurella paurometabola 2061 species no rank 697024 0 83 1 genus 1847725 0 83 1 83 1 0 species 1528099 Lawsonella clevelandensis 0 184 2 85029 family genus 37914 2 184 0 1 88 0 499555 species Dietzia timorensis 2617939 no rank 0 1 96 96 1 0 712270 species Dietzia sp. oral taxon 368 Mycobacteriaceae 1 family 1762 11 0 56 5686 0 2 235 1073531 genus 1 122 0 species 1788 Mycobacterium terrae Mycobacterium sinense 875328 species 0 113 1 1 Mycobacterium 247 genus 1763 0 34 3205 Mycobacterium ulcerans 1809 species 0 1 137 0 385 4 species group 77643 292 3 0 99 1773 species 1 Mycobacterium tuberculosis 33894 biotype Mycobacterium africanum 97 1 0 Mycobacterium bovis biotype 1765 0 96 1 Mycobacterium canettii species 78331 0 1 93 species 261524 Mycobacterium liflandii 1 82 0 134 1 0 482462 species Mycobacterium dioxanotrophicus 614 8 0 species group 120793 Mycobacterium colombiense 339268 species 0 95 1 Mycobacterium marseillense 701042 species 0 1 105 Mycobacterium paraintracellulare 1138383 species 0 19 1 1 Mycobacterium intracellulare 105 species 1767 0 4 186 0 55 1 Mycobacterium chimaera 222805 subspecies 0 1 11 Mycobacterium indicus pranii subspecies 35617 1203599 subspecies Mycobacterium yongonense 1 15 0 0 1 209 Mycobacterium avium species 1764 1781 species Mycobacterium marinum 93 1 0 1196 13 0 2642494 no rank 0 91 1 Mycobacterium sp. QIA-37 species 1561223 0 1 65 Mycobacterium sp. VKM Ac-1817D species 1273687 1682113 species Mycobacterium sp. YC-RL4 96 1 0 Mycobacterium sp. JLS species 164757 0 1 80 0 90 1 Mycobacterium sp. WY10 species 1920667 species 1570328 Mycobacterium sp. NRRL B-3805 1 79 0 0 156 1 Mycobacterium sp. EPa45 species 1545728 189918 species Mycobacterium sp. KMS 72 1 0 80 1 0 2051552 species Mycobacterium sp. PYR15 157 1 0 species 1879023 Mycobacterium sp. djl-10 0 18 1 Mycobacterium sp. MOTT36Y species 1168287 0 72 1 Mycobacterium sp. MCS species 164756 140 1 0 species 212767 Mycobacterium sp. JS623 species group 2249310 0 1 93 species 722731 Mycobacterium shigaense 93 1 0 1 103 0 species 1768 Mycobacterium kansasii 1 82 0 species 29311 Mycobacterium haemophilum species 1769 Mycobacterium leprae 39 1 0 0 13 1539 1866885 genus 1 79 0 species 1795 Mycobacterium neoaurum Mycobacterium thermoresistibile species 1797 0 105 1 0 1 102 Mycobacterium smegmatis species 1772 Mycobacterium aurum species 1791 0 1 198 species 110539 Mycobacterium vanbaalenii 154 1 0 1 55 0 species 1766 Mycobacterium fortuitum Mycobacterium litorale 758802 species 0 150 1 68 1 0 species 1804 Mycobacterium gilvum species 1771 Mycobacterium phlei 1 220 0 90 1 0 1810 species Mycobacterium vaccae 110 1 0 species 36814 Mycobacterium rhodesiae Mycobacterium goodii 134601 species 0 1 126 1800 species Mycobacterium chubuense 82 1 0 genus 670516 5 652 0 0 373 1 Mycobacterium abscessus 36809 species Mycobacterium immunogenum 83262 species 0 1 43 1 99 0 species 1578165 Mycobacterium saopaulense 1 44 0 species 1774 Mycobacterium chelonae 1520670 species Mycobacterium stephanolepidis 1 93 0 genus 697025 44 1 0 639313 species Hoyosella subflava 44 1 0 6690 52 0 family 1653 55 Corynebacteriaceae 1 6635 51 0 211 1716 genus 1 Corynebacterium 169 1 0 65058 species Corynebacterium ulcerans 1 103 0 species 1230998 Corynebacterium frankenforstense Corynebacterium falsenii 108486 species 0 1 495 species 349751 Corynebacterium marinum 144 1 0 1652495 species Corynebacterium crudilactis 118 1 0 1 122 0 571915 species Corynebacterium mustelae 0 68 1 Corynebacterium maris species 575200 1 284 0 species 1718 Corynebacterium glutamicum Corynebacterium ammoniagenes 1697 species 0 103 1 species 1705 Corynebacterium stationis 191 1 0 Corynebacterium terpenotabidum 89154 species 0 1 58 144 1 0 1231000 species Corynebacterium lactis 0 29 1 Corynebacterium atypicum 191610 species 1 73 0 species 225326 Corynebacterium halotolerans 1 104 0 161895 species Corynebacterium phocae 0 1 206 Corynebacterium pseudotuberculosis species 1719 Corynebacterium efficiens species 152794 0 81 1 1 222 0 146827 species Corynebacterium simulans species 161896 Corynebacterium camporealensis 1 111 0 0 81 1 Corynebacterium uterequi species 1072256 species 258224 Corynebacterium resistens 87 1 0 0 1 109 Corynebacterium sphenisci species 191493 species 1717 Corynebacterium diphtheriae 1 245 0 103 1 0 species 156978 Corynebacterium imitans 0 69 1 Corynebacterium deserti species 1408191 0 1 111 Corynebacterium kroppenstedtii species 161879 Corynebacterium singulare species 161899 0 1 167 species 160386 Corynebacterium casei 1 63 0 1 75 0 species 35757 Corynebacterium cystitidis 0 1 142 Corynebacterium aquilae species 203263 0 198 1 Corynebacterium variabile species 1727 0 1 75 Corynebacterium glaucum 187491 species 1 232 0 species 38289 Corynebacterium jeikeium 1050174 species Corynebacterium epidermidicanis 1 166 0 1404244 species Corynebacterium glyciniphilum 104 1 0 155 1 0 43770 species Corynebacterium striatum 107 1 0 species 38305 Corynebacterium vitaeruminis 0 1 123 Corynebacterium flavescens species 28028 42817 species Corynebacterium argentoratense 1 135 0 Corynebacterium urealyticum 43771 species 0 99 1 0 121 1 Corynebacterium humireducens species 1223514 87 1 0 species 1721 Corynebacterium callunae 401472 species Corynebacterium ureicelerivorans 53 1 0 1 45 0 species 1121358 Corynebacterium doosanense 0 151 2 no rank 2624378 0 1 52 Corynebacterium sp. NML98-0116 702967 species Corynebacterium sp. ATCC 6931 1487956 species 0 99 1 1 190 0 species 169292 Corynebacterium aurimucosum 1 60 0 92706 species [Brevibacterium] flavum 65 1 0 35755 species Corynebacterium kutscheri 0 1 181 Corynebacterium testudinoris 136857 species family 85026 11 Gordoniaceae 1 843 9 0 1 Gordonia 15 genus 2053 0 8 832 Gordonia phthalatica species 1136941 0 83 1 84595 species Gordonia polyisoprenivorans 1 104 0 0 80 1 Gordonia iterans species 1004901 no rank 2657482 0 2 381 Gordonia sp. KTR9 337191 species 0 1 205 Gordonia sp. YC-JH1 species 2059875 0 1 176 Gordonia terrae 2055 species 0 1 96 1 73 0 species 2054 Gordonia bronchialis 0 31 4307 1 Nocardiaceae 14 85025 family 0 7 1629 1 Nocardia 17 1817 genus 455432 species Nocardia terpenica 1 253 0 156 1 0 37332 species Nocardia seriolae 0 226 1 Nocardia nova 37330 species 380 1 0 37326 species Nocardia brasiliensis 0 255 1 Nocardia cyriacigeorgica species 135487 342 1 0 37329 species Nocardia farcinica 2664 23 0 1827 genus 106 Rhodococcus 1 70 1 0 103816 species Rhodococcus pyridinivorans 1833 species Rhodococcus erythropolis 183 1 0 Rhodococcus qingshengii 334542 species 0 1 88 no rank 192944 12 1055 0 41 1 0 species 1807790 Rhodococcus sp. BH4 57 1 0 1045808 species Rhodococcus sp. YL-1 1 59 0 species 935199 Rhodococcus sp. p52 species 679318 Rhodococcus sp. WMMA185 1 99 0 1723645 species Rhodococcus sp. 008 1 85 0 Rhodococcus sp. H-CA8f species 1727214 0 78 1 1033922 species Rhodococcus sp. WB1 1 135 0 0 1 92 Rhodococcus sp. 2G 1570939 species 0 147 1 Rhodococcus sp. MTM3W5.2 1805827 species Rhodococcus sp. PBTS 1 1653478 species 0 1 59 0 162 1 Rhodococcus sp. PBTS 2 species 1653479 0 1 41 Rhodococcus sp. B7740 1564114 species 0 1 112 Rhodococcus aetherivorans species 191292 0 1 190 Rhodococcus jostii 132919 species species 43767 Rhodococcus hoagii 215 1 0 0 142 1 Rhodococcus ruber species 1830 species 37919 Rhodococcus opacus 328 1 0 Rhodococcus fascians species 1828 0 1 106 Rhodococcus rhodochrous species 1829 0 1 69 5 order 85012 1 Streptosporangiales 1428 13 0 6 729 0 4 family 83676 1 Nocardiopsaceae 166 1 0 83677 genus 2021 species Thermobifida fusca 166 1 0 Nocardiopsis 1 genus 2013 1 0 559 4 308 1 0 2014 species Nocardiopsis dassonvillei 1 153 0 species 53437 Nocardiopsis alba 97 1 0 species 280236 Nocardiopsis gilva 1 Thermomonosporaceae 7 family 2012 0 194 3 0 187 2 1 Thermomonospora 1 genus 2019 Thermomonospora curvata species 2020 0 1 186 3 500 0 2004 family 17 Streptosporangiaceae 1 1 215 0 genus 2000 Streptosporangium roseum species 2001 0 1 215 83681 genus 1 268 0 0 268 1 2593643 no rank 1 268 0 species 1909395 Nonomuraea sp. ATCC 55076 Micromonosporales 1 85008 order 11 0 19 2255 18 2244 0 27 28056 family 1 Micromonosporaceae 12 1865 genus 1 Actinoplanes 6 1094 0 species 1866 Actinoplanes missouriensis 152 1 0 0 3 574 2626549 no rank Actinoplanes sp. SE50 2033844 species 0 1 174 649831 species Actinoplanes sp. N902-109 226 1 0 0 174 1 Actinoplanes sp. SE50/110 134676 species Actinoplanes friuliensis 196914 species 0 1 356 Plantactinospora 1 genus 673534 3 0 4 506 503 3 0 no rank 2631981 184 1 0 2024580 species Plantactinospora sp. KBS50 0 154 1 Plantactinospora sp. BC1 2108470 species Plantactinospora sp. BB1 2071627 species 0 1 165 0 420 4 Micromonospora 1 genus 1873 1 Micromonospora aurantiaca species 47850 0 120 1 no rank 2617518 1 96 0 0 1 96 Micromonospora sp. L5 species 648999 0 203 1 Verrucosispora maris 1003110 species 0 3 197 Salinispora 1 genus 168694 3 168697 species Salinispora arenicola 1 101 0 Salinispora tropica 168695 species 0 93 1 1 28 0 52018 no rank 0 1 28 Actinobacteria bacterium IMCC26256 species 1650658 1 37 0 1643683 order 0 37 1 family 85032 0 1 37 genus 28048 28049 species Acidothermus cellulolyticus 37 1 0 11 562 0 order 2039638 2 Candidatus Nanopelagicales 1 2162846 family 0 10 560 2039639 genus 77 3 0 0 1 31 Candidatus Nanopelagicus abundans species 1884916 Candidatus Nanopelagicus hibericus species 1884915 0 1 14 Candidatus Nanopelagicus limnes 1884634 species 0 1 32 483 7 0 genus 622681 3 Candidatus Planktophila 1 60 1 0 1884907 species Candidatus Planktophila vernalis 0 68 1 Candidatus Planktophila dulcis species 1884914 0 1 131 Candidatus Planktophila versatilis 1884905 species 1 96 0 573600 species Candidatus Planktophila limnetica Candidatus Planktophila sulfonica species 1884904 0 1 25 species 1884913 Candidatus Planktophila lacus 100 1 0 0 35 4840 Pseudonocardiales 1 85010 order 27 2070 family 59 Pseudonocardiaceae 1 4813 34 0 276 1 0 genus 43356 276 1 0 43357 species Kutzneria albida 1 174 0 1835 genus 0 1 174 Saccharopolyspora erythraea species 1836 165301 genus 157 1 0 0 1 157 Lentzea guizhouensis 1586287 species Amycolatopsis 1 1813 genus 56 0 7 1413 0 2 426 2618356 no rank 1 181 0 1911175 species Amycolatopsis sp. BJA-103 species 1896961 Amycolatopsis sp. AA4 245 1 0 1814 species Amycolatopsis methanolica 1 263 0 0 1 200 Amycolatopsis mediterranei species 33910 317 1 0 31958 species Amycolatopsis orientalis Amycolatopsis japonica 208439 species 0 151 1 901 6 0 10 65496 genus 1 Actinoalloteichus 2644606 no rank 293 2 0 0 186 1 Actinoalloteichus sp. GBA129-24 species 1612551 0 1 107 Actinoalloteichus sp. AHMU CJ021 2072503 species Actinoalloteichus hymeniacidonis species 340345 0 1 223 0 1 168 Actinoalloteichus hoggarensis species 1470176 0 1 207 Actinoalloteichus sp. ADI127-7 species 1612552 0 132 1 674734 genus no rank 2636053 132 1 0 species 1653480 Alloactinosynnema sp. L-07 132 1 0 1 149 0 genus 2071 103731 species Saccharothrix espanaensis 1 149 0 0 1 92 genus 1851 1 92 0 1852 species Saccharomonospora viridis 398 3 0 40566 genus 7 Actinosynnema 1 Actinosynnema pretiosum 42197 species 0 1 230 1 161 0 40567 species Actinosynnema mirum 1847 genus 9 Pseudonocardia 1 8 721 0 0 533 6 2619320 no rank 1688404 species Pseudonocardia sp. EC080610-09 75 1 0 Pseudonocardia sp. EC080619-01 species 1096856 0 78 1 0 123 1 Pseudonocardia sp. HH130630-07 species 1690815 0 1 81 Pseudonocardia sp. AL041005-10 species 445576 0 1 115 Pseudonocardia sp. HH130629-09 1641402 species 0 61 1 Pseudonocardia sp. EC080625-04 species 1096868 0 179 1 Pseudonocardia dioxanivorans species 240495 2029 genus 205 1 0 860235 species Kibdelosporangium phytohabitans 1 205 0 0 2 136 1 Prauserella 1 142577 genus 1 135 0 530584 species Prauserella marina order 2037 2 Actinomycetales 1 5609 17 0 801 2049 family 1 Actinomycetaceae 16 5607 0 0 779 1 genus 2529408 Actinomyces meyeri 52773 species 0 1 779 0 1 124 28263 genus 124 1 0 28264 species Arcanobacterium haemolyticum genus 1653174 0 171 1 59505 species Actinotignum schaalii 1 171 0 13 2050 genus 1 Mobiluncus 2 486 0 1 473 0 species 2051 Mobiluncus curtisii Actinomyces 1 genus 1654 21 0 9 3078 Actinomyces sp. VUL4_3 species 1912795 0 1 75 Actinomyces radicidentis 111015 species 0 1 178 no rank 2609248 3 497 0 0 184 1 Actinomyces sp. oral taxon 897 species 2081702 Actinomyces sp. oral taxon 414 species 712122 0 1 183 1851395 species Actinomyces sp. Chiba101 130 1 0 194 1 0 species 544580 Actinomyces oris 0 2000 1 Actinomyces pacaensis 1852377 species 1 113 0 species 1960083 Actinomyces gaoshouyii genus 1069494 0 1 168 168 1 0 1661 species Trueperella pyogenes 2 139 0 no rank 1643818 2 genus 147067 1 Thermobispora 2 139 0 2006 species Thermobispora bispora 137 1 0 0 3 88 622452 order 83778 family 5 Kineosporiaceae 1 88 3 0 83 2 0 1 33981 genus 1 Kineococcus 82 1 0 131568 species Kineococcus radiotolerans 0 4 323 84995 class 323 4 0 84996 order 12 Rubrobacterales 1 family 84997 3 311 0 13 42255 genus 1 Rubrobacter 3 311 0 1 59 0 42256 species Rubrobacter radiotolerans Rubrobacter xylanophilus species 49319 0 1 239 200795 phylum 3 Chloroflexi 1 3974 34 0 1 Ardenticatenia 4 1382928 class 0 4 249 0 245 3 1 Ardenticatenales 6 order 1382929 family 1382930 0 239 2 239 2 0 genus 1988031 1 Candidatus Promineofilum 1 238 1 0 1806508 species Candidatus Promineofilum breve 1 292625 class 1 Anaerolineae 792 5 0 0 4 791 Anaerolineales 1 order 292629 7 3 784 0 family 292628 genus 233189 306 1 0 306 1 0 species 167964 Anaerolinea thermophila 2019482 genus 1 191 0 191 1 0 1986204 species Brevefilum fermentans 0 287 1 1324991 no rank Anaerolineaceae bacterium oral taxon 439 species 1889813 0 1 287 0 483 6 1 Thermomicrobia 1 189775 class 0 93 1 189776 order 93 1 0 family 189777 genus 499 1 93 0 0 93 1 Thermomicrobium roseum 500 species 85000 subclass 0 4 389 4 389 0 85001 order 4 Sphaerobacterales 1 suborder 255728 3 385 0 0 385 3 1 Sphaerobacteraceae 1 family 85002 10 genus 2056 1 Sphaerobacter 2 384 0 species 2057 Sphaerobacter thermophilus 1 374 0 class 475962 0 332 3 order 475963 3 332 0 3 332 0 475964 family 1 Caldilineaceae 1 1 Caldilinea 3 genus 233191 0 331 2 Caldilinea aerophila species 133453 0 328 1 0 7 1114 1 Dehalococcoidia 3 301297 class 0 532 3 Dehalogenimonas 1 670486 genus 11 species 1839801 Dehalogenimonas formicexedens 260 1 0 552810 species Dehalogenimonas lykanthroporepellens 1 261 0 579 3 0 1202465 order family 1202464 0 3 579 Dehalococcoides 1 61434 genus 2 0 3 579 0 1 137 no rank 237581 1 137 0 1522671 species Dehalococcoides sp. UCH007 440 1 0 species 61435 Dehalococcoides mccartyi 0 8 1001 1 Chloroflexia 1 class 32061 Chloroflexales 1 32064 order 4 0 7 1000 suborder 1508595 0 3 461 1508635 family 1 Roseiflexaceae 1 461 3 0 genus 120961 460 2 0 2609473 no rank 244 1 0 species 357808 Roseiflexus sp. RS-1 244 1 0 120962 species Roseiflexus castenholzii 1 216 0 535 3 0 suborder 1508594 0 535 3 1106 family 1107 genus 0 535 3 Chloroflexus aggregans 152260 species 0 141 1 197 species 1108 1 Chloroflexus aurantiacus 2 394 0 0 1 197 Chloroflexus sp. Y-400-fl 480224 strain Tenericutes 1 544448 phylum 1 0 99 11698 0 95 10706 1 Mollicutes 7 class 31969 Mycoplasmatales 1 order 2085 1 0 4008 44 1 Mycoplasmataceae 30 family 2092 0 4007 43 27 2531 0 29 2093 genus 1 Mycoplasma 0 59 1 Mycoplasma haemofelis species 29501 0 1 20 Mycoplasma wenyonii species 65123 Mycoplasma genitalium species 2097 0 1 18 30 1 0 2100 species Mycoplasma hyorhinis 15 1 0 171632 species Mycoplasma ovis 656088 species group 0 698 3 2095 species Mycoplasma capricolum 1 266 0 Mycoplasma leachii species 2105 0 156 1 Mycoplasma mycoides 2102 species 0 1 276 Mycoplasma gallisepticum species 2096 0 42 1 2128 species Mycoplasma flocculare 1 86 0 Mycoplasma haemocanis 136241 species 0 13 1 0 79 1 Mycoplasma bovoculi 45362 species 0 1 75 Mycoplasma canadense 29554 species 0 223 1 Mycoplasma hominis 2098 species 0 1 75 Mycoplasma suis 57372 species 2683645 no rank 0 135 1 Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 species 0 135 1 0 126 1 Mycoplasma putrefaciens 2123 species 1 63 0 86660 species Mycoplasma dispar 0 89 1 Mycoplasma crocodyli 50052 species 1 82 0 2099 species Mycoplasma hyopneumoniae 46 1 0 2111 species Mycoplasma arthritidis species 984991 Mycoplasma parvum 20 1 0 1 22 0 2104 species Mycoplasma pneumoniae 0 1 179 Mycoplasma penetrans 28227 species 1 194 0 2118 species Mycoplasma mobile 113 1 0 species 51365 Mycoplasma yeatsii 1 genus 2129 1 Ureaplasma 338 3 0 0 1 219 Ureaplasma parvum 134821 species Ureaplasma urealyticum 2130 species 0 118 1 0 1108 12 2767358 genus 29553 species Mycoplasma bovirhinis 1 73 0 species 28903 Mycoplasma bovis 1 290 0 2110 species Mycoplasma agalactiae 102 1 0 70 1 0 species 2112 Mycoplasma bovigenitalium 0 35 1 Mycoplasma californicum 2113 species 0 38 1 Mycoplasma pulmonis species 2107 115 1 0 species 2094 Mycoplasma arginini 0 72 1 Mycoplasma cynos 171284 species 61 1 0 29555 species Mycoplasma canis 58 1 0 48003 species Mycoplasma pullorum 0 123 1 Mycoplasma synoviae 2109 species 1 71 0 2115 species Mycoplasma fermentans 11 order 186329 1 Acholeplasmatales 13 1496 0 1 Acholeplasmataceae 4 2146 family 0 1485 12 434 6 0 genus 33926 8 Candidatus Phytoplasma 1 species group 85630 0 1 73 0 73 1 Candidatus Phytoplasma mali species 37692 242 3 0 85620 species group Aster yellows witches'-broom phytoplasma 229545 species 0 1 38 1 110 0 species 202462 Maize bushy stunt phytoplasma 94 1 0 100379 species Onion yellows phytoplasma 1 111 0 species group 85632 0 1 111 Candidatus Phytoplasma australiense 59748 species 26 2147 genus 1 Acholeplasma 1047 5 0 2148 species Acholeplasma laidlawii 273 1 0 277 1 0 61635 species Acholeplasma brassicae Acholeplasma palmae species 38986 0 1 260 0 1 211 Acholeplasma oculi species 35623 37 5195 0 4 186328 order 1 Entomoplasmatales 6 family 2131 1 Spiroplasmataceae 24 3665 0 2132 genus 25 Spiroplasma 1 3659 23 0 0 196 1 Spiroplasma eriocheiris 315358 species 0 450 2 no rank 2637901 1914410 species Spiroplasma sp. NBRC 100390 225 1 0 1898044 species Spiroplasma sp. TU-14 225 1 0 149 1 0 2145 species Spiroplasma taiwanense 0 274 1 Spiroplasma turonicum species 216946 0 104 1 Spiroplasma monobiae 2136 species species 2133 Spiroplasma citri 174 1 0 2144 species Spiroplasma mirum 1 93 0 Spiroplasma syrphidicola 216945 species 0 125 1 216937 species Spiroplasma floricola 1 114 0 1 217 0 216934 species Spiroplasma corruscae 1 78 0 2137 species Spiroplasma apis 216942 species Spiroplasma litorale 1 134 0 Spiroplasma helicoides species 216938 0 1 190 Spiroplasma sabaudiense 216944 species 0 137 1 Spiroplasma culicicola species 216935 0 1 344 0 1 95 Spiroplasma clarkii 2139 species 1 220 0 216933 species Spiroplasma chrysopicola 216936 species Spiroplasma diminutum 134 1 0 1114980 species Spiroplasma atrichopogonis 94 1 0 Spiroplasma kunkelii species 47834 0 100 1 0 212 1 Spiroplasma cantharicola 362837 species family 33925 12 1526 0 genus 46238 0 492 4 1 71 0 species 74700 Entomoplasma freundtii Entomoplasma melaleucae 81459 species 0 160 1 0 1 139 Entomoplasma somnilux species 215578 1 122 0 species 214888 Entomoplasma luminosum genus 46239 8 Mesoplasma 1 1034 8 0 0 1 131 Mesoplasma entomophilum species 2149 species 225999 Mesoplasma syrphidae 1 257 0 0 1 189 Mesoplasma florum 2151 species 324078 species Mesoplasma coleopterae 112 1 0 138853 species Mesoplasma lactucae 1 151 0 0 1 105 Mesoplasma tabanidae 219745 species 1 81 0 species 216427 Mesoplasma chauliocola 0 700 2 713063 no rank 1 377 0 species 1911684 Tenericutes bacterium MO-XQ Tenericutes bacterium MZ-XQ species 1911683 0 1 323 2799557 no rank 0 1 291 genus 1912503 0 1 291 no rank 2624196 0 1 291 291 1 0 1541959 species Candidatus Izimaplasma sp. HR1 128 19270 0 1798711 clade 128 19270 0 phylum 1117 11 Cyanobacteria 1 1 Synechococcales 33 1890424 order 0 6330 51 family 2303730 0 134 1 134 1 0 genus 170610 0 1 134 Halomicronema hongdechloris 1209493 species 0 197 1 1890429 family 155977 genus 197 1 0 0 1 197 Acaryochloris marina 155978 species family 1890426 10 Synechococcaceae 1 32 3776 0 146785 genus 48 1 0 0 48 1 Thermosynechococcus elongatus 146786 species 0 256 1 genus 13034 Dactylococcopsis salina 292566 species 0 256 1 40 1129 genus 1 Synechococcus 26 3027 0 species 32046 Synechococcus elongatus 1 96 0 2626047 no rank 23 2747 0 65 1 0 species 1350461 Synechococcus sp. UTEX 2973 0 1 67 Synechococcus sp. PCC 73109 species 374982 321332 species Synechococcus sp. JA-2-3B'a(2-13) 1 204 0 91 1 0 64471 species Synechococcus sp. CC9311 species 84588 Synechococcus sp. WH 8102 162 1 0 1 117 0 585423 species Synechococcus sp. KORDI-49 species 195498 Synechococcus sp. PCC 7117 97 1 0 Synechococcus sp. PCC 8807 species 195248 0 1 109 0 60 1 Synechococcus sp. RCC307 316278 species 109 1 0 374981 species Synechococcus sp. PCC 7003 Synechococcus sp. KORDI-52 585425 species 0 115 1 0 83 1 Synechococcus sp. PCC 6312 species 195253 Synechococcus sp. KORDI-100 species 1280380 0 1 89 0 101 1 Synechococcus sp. PCC 7002 species 32049 0 1 191 Synechococcus sp. WH 7803 32051 species Synechococcus sp. JA-3-3Ab 321327 species 0 208 1 Synechococcus sp. WH 8109 166314 species 0 108 1 157 1 0 species 29410 Synechococcus sp. WH 8103 1173263 species Synechococcus sp. PCC 7502 208 1 0 0 140 1 Synechococcus sp. SynAce01 1916956 species Synechococcus sp. CC9902 316279 species 0 97 1 92 1 0 species 1827144 Synechococcus sp. NIES-970 Synechococcus sp. CC9605 110662 species 0 1 77 144 1 0 species 33070 Synechococcus lividus 435 3 0 167375 genus 2 Cyanobium 1 2627006 no rank 0 1 255 1851505 species Cyanobium sp. NIES-981 255 1 0 0 178 1 Cyanobium gracile species 59930 0 251 4 1890428 family 4 251 0 7 1142 genus 1 Synechocystis no rank 2640012 0 244 3 Synechocystis sp. IPPAS B-1465 species 2116702 0 1 62 Synechocystis sp. PCC 6714 species 1147 0 120 1 0 1 62 Synechocystis sp. PCC 6803 1148 species 1890436 family 335 2 0 3 genus 1152 1 Pseudanabaena 2 335 0 0 332 1 2593292 no rank 332 1 0 species 82654 Pseudanabaena sp. PCC 7367 1 1213 family 1 Prochloraceae 1130 5 0 genus 1218 2 Prochlorococcus 1 1129 4 0 Prochlorococcus marinus 1219 species 0 1 810 0 2 317 2627481 no rank 1 115 0 1501268 species Prochlorococcus sp. MIT 0604 Prochlorococcus sp. MIT 0801 1501269 species 0 202 1 family 1890438 3 Leptolyngbyaceae 1 5 474 0 0 4 471 genus 47251 species 1184 Leptolyngbya boryana 1 141 0 2650499 no rank 330 3 0 111781 species Leptolyngbya sp. PCC 7376 89 1 0 Leptolyngbya sp. O-77 1080068 species 0 1 151 1 90 0 1752064 species Leptolyngbya sp. NIES-3755 1 Pleurocapsales 4 52604 order 0 5 647 family 1890498 3 454 0 102115 genus 1 Stanieria 1 3 454 0 species 102116 Stanieria cyanosphaera 188 1 0 0 265 1 no rank 2642663 0 265 1 Stanieria sp. NIES-3757 1807358 species 189 1 0 family 1890500 genus 44474 0 1 189 0 1 189 Pleurocapsa minor 54308 species 1161 order 7 Nostocales 1 5674 31 0 0 1 302 family 1185 genus 373984 0 302 1 no rank 2676603 302 1 0 1 302 0 species 373994 Rivularia sp. PCC 7116 Nostocaceae 1 family 1162 3 0 18 3100 0 4 633 1 Anabaena 1 1163 genus 2 482 0 2619674 no rank 1 294 0 46234 species Anabaena sp. 90 0 188 1 Anabaena sp. WA102 species 1647413 1 150 0 species 1165 Anabaena cylindrica 28 genus 1177 1 Nostoc 10 2052 0 0 7 1453 no rank 2593658 186 1 0 1751286 species Nostoc sp. NIES-3756 Nostoc sp. PCC 7107 317936 species 0 154 1 species 28072 Nostoc sp. PCC 7524 212 1 0 Nostoc sp. PCC 7120 103690 species 0 233 1 1 176 0 1618022 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1261031 species 0 1 235 1869241 species Nostoc sp. CENA543 1 257 0 species 272131 Nostoc punctiforme 1 226 0 Nostoc flagelliforme species 1306274 0 1 345 412 3 0 1 genus 264688 1 Trichormus 0 1 182 Trichormus azollae 1164 species 0 1 229 Trichormus variabilis species 264691 1892263 family 2 304 0 0 304 2 1 Fischerella 1 genus 1190 494603 no rank 0 303 1 species 1752063 Fischerella sp. NIES-3754 303 1 0 1219117 no rank 0 1 139 species 1940762 Nostocales cyanobacterium HT-58-2 139 1 0 family 2661849 0 8 1822 1 Calothrix 5 genus 1186 0 1822 8 0 124 1 Calothrix parietina species 32054 2619626 no rank 0 1693 6 0 583 1 Calothrix sp. 336/3 1337936 species 1 150 0 99598 species Calothrix sp. PCC 7507 1 267 0 species 2005461 Calothrix sp. NIES-4101 Calothrix sp. NIES-4071 2005469 species 0 358 1 89 1 0 2005462 species Calothrix sp. NIES-3974 1954171 species Calothrix sp. NIES-2098 1 246 0 0 1 180 1983111 no rank 1 180 0 718217 species cyanobacterium endosymbiont of Epithemia turgida 0 32 5870 1301283 subclass Chroococcales 1 order 1118 3 0 3360 18 1890464 family 3 Chroococcaceae 1 6 866 0 268175 genus 1 207 0 0 207 1 2648896 no rank 0 1 207 Chondrocystis sp. NIES-4102 2005460 species 1 109 0 genus 102231 no rank 2623012 1 109 0 1 109 0 species 1173026 Gloeocapsa sp. PCC 7428 genus 669357 3 Geminocystis 1 3 547 0 2 544 0 2625037 no rank species 1615909 Geminocystis sp. NIES-3708 1 317 0 1617448 species Geminocystis sp. NIES-3709 227 1 0 1 Cyanobacteriaceae 3 1890452 family 0 386 2 1 383 0 102234 genus 383 1 0 379064 species Cyanobacterium aponinum family 1890450 0 7 1617 2 403 0 2546365 genus 2 403 0 2546366 species 221 1 0 strain 395962 Cyanothece sp. PCC 8802 182 1 0 strain 41431 Cyanothece sp. PCC 8801 genus 28070 0 2 724 0 265 1 species 2546359 Cyanothece sp. PCC 7822 strain 497965 0 265 1 1 459 0 species 2546356 65393 strain Cyanothece sp. PCC 7424 1 459 0 1 35 0 genus 1453359 0 1 35 Candidatus Atelocyanobacterium thalassa species 713887 126 1 0 no rank 92682 126 1 0 genus 76023 2632878 no rank 0 126 1 1 126 0 species 65093 Halothece sp. PCC 7418 263510 genus 1 329 0 species 2546360 329 1 0 Cyanothece sp. ATCC 51142 strain 43989 0 329 1 1890449 family 488 2 0 2 488 0 genus 1125 Microcystis aeruginosa 1126 species 0 379 1 1 109 0 no rank 2643300 Microcystis sp. MC19 1967666 species 0 1 109 1 Oscillatoriales 5 order 1150 0 2510 14 family 1892252 0 2 418 0 197 1 44471 genus 2642155 no rank 1 197 0 Microcoleus sp. PCC 7113 1173027 species 0 1 197 1 221 0 1205 genus 1 221 0 1206 species Trichodesmium erythraeum 1892251 family 110 1 0 110 1 0 genus 63132 no rank 2648775 0 110 1 0 1 110 Geitlerinema sp. PCC 7407 1173025 species 0 298 2 Gomontiellaceae 1 1892255 family 1 1 297 0 genus 241421 0 297 1 Crinalium epipsammum 241425 species 1 Oscillatoriaceae 1 family 1892254 0 1311 5 2 258 0 1 1155738 genus 1 Moorea species 1155739 Moorea producens 1 257 0 2 1052 0 genus 1158 0 652 1 Oscillatoria nigro-viridis species 482564 Oscillatoria acuminata 118323 species 0 400 1 0 368 3 Cyanothecaceae 1 1892249 family 10 1 Cyanothece 4 genus 43988 0 358 2 0 354 1 2649277 no rank 1 354 0 395961 species Cyanothece sp. PCC 7425 order 1890505 0 1 242 0 1 242 family 1890528 242 1 0 54298 genus 0 1 242 Chroococcidiopsis thermalis species 54299 307596 class 1 Gloeobacteria 1 6 316 0 0 5 315 1 Gloeobacterales 4 307595 order 0 4 311 1 Gloeobacteraceae 2 1890422 family Gloeobacter 1 genus 33071 1 0 3 309 33072 species Gloeobacter violaceus 164 1 0 1 144 0 1416614 species Gloeobacter kilaueensis 4188 37 0 phylum 200918 Thermotogae 1 188708 class 5 0 37 4188 0 421 5 Kosmotogales 1 order 1643946 1 0 4 420 Kosmotogaceae 1 family 1643948 3 1184396 genus 0 1 83 species 1184387 Mesotoga prima 83 1 0 genus 651456 334 2 0 97 1 0 651457 species Kosmotoga olearia 237 1 0 1330330 species Kosmotoga pacifica 2946 26 0 order 2419 family 1643950 0 1135 9 Thermosipho 1 genus 2420 2 0 5 785 no rank 2676525 0 2 378 Thermosipho sp. 1063 1462747 species 0 1 189 1437364 species Thermosipho sp. 1070 189 1 0 Thermosipho africanus 2421 species 0 215 1 species 46541 Thermosipho melanesiensis 190 1 0 0 4 350 1 Fervidobacterium 1 2422 genus 0 1 82 Fervidobacterium islandicum species 2423 127 1 0 species 93466 Fervidobacterium pennivorans 0 1 140 Fervidobacterium nodosum 2424 species 0 1811 17 1 Thermotogaceae 1 188709 family 0 1136 11 1 Thermotoga 11 2335 genus Thermotoga neapolitana species 2337 0 1 135 0 1 119 Thermotoga petrophila 93929 species 0 1 57 Thermotoga profunda 1508420 species Thermotoga naphthophila 93930 species 0 152 1 no rank 2631113 447 4 0 Thermotoga sp. RQ2 species 126740 0 112 1 Thermotoga sp. RQ7 species 126738 0 1 127 1157947 species Thermotoga sp. Cell2 105 1 0 species 1157948 Thermotoga sp. 2812B 1 103 0 1 94 0 2336 species Thermotoga maritima 121 1 0 1508419 species Thermotoga caldifontis 1 Pseudothermotoga 4 genus 1643951 0 5 674 species 38322 Pseudothermotoga elfii 154 1 0 Pseudothermotoga lettingae species 177758 0 176 1 0 108 1 Pseudothermotoga hypogea 57487 species 232 1 0 species 119394 Pseudothermotoga thermarum 0 5 816 1643947 order family 1643949 0 5 816 0 1 177 1511648 genus Defluviitoga tunisiensis 1006576 species 0 177 1 401 2 0 genus 160798 2640159 no rank 0 1 225 225 1 0 1545835 species Marinitoga sp. 1137 149715 species Marinitoga piezophila 176 1 0 2 238 0 28236 genus 2 Petrotoga 1 1 236 0 species 69499 Petrotoga mobilis 14742 230 0 2157 superkingdom 1987 43 0 1783275 clade 0 531 10 651137 phylum 651142 no rank 4 109 0 1 genus 1593364 1 Candidatus Nitrosopelagicus 2 35 0 0 34 1 Candidatus Nitrosopelagicus brevis 1410606 species 1825023 genus 0 2 74 1 11 0 1846278 species Candidatus Nitrosotenuis sp. AQ6f 1603555 species Candidatus Nitrosotenuis cloacae 1 63 0 135 2 0 class 1643678 1 97 0 order 1033996 1033997 family 0 1 97 497726 genus 97 1 0 0 1 97 Nitrososphaera viennensis 1034015 species 1968909 order 0 38 1 38 1 0 1968910 family 0 1 38 genus 498374 2045011 species Candidatus Nitrosocaldus islandicus 38 1 0 order 31932 287 4 0 0 4 287 family 338190 1 Candidatus Nitrosomarinus 1 genus 1993653 0 2 124 species 1898749 Candidatus Nitrosomarinus catalina 123 1 0 338191 genus 163 2 0 species 1229909 Candidatus Nitrosopumilus sediminis 52 1 0 0 111 1 Candidatus Nitrosopumilus adriaticus species 1580092 28889 phylum 0 1450 32 32 1450 0 class 183924 2266 order 378 10 0 2267 family 100 6 0 50 2 0 genus 2270 2271 species Thermoproteus tenax 25 1 0 184117 species Thermoproteus uzoniensis 1 25 0 0 1 9 76886 genus 0 9 1 Caldivirga maquilingensis species 76887 genus 2276 0 8 1 0 1 8 Pyrobaculum islandicum species 2277 genus 164450 0 33 2 985052 species Vulcanisaeta moutnovskia 12 1 0 21 1 0 164451 species Vulcanisaeta distributa family 114378 4 278 0 genus 2268 4 278 0 Thermofilum pendens species 2269 0 6 1 1 11 0 1550241 species Thermofilum uzonense species 1365176 Thermofilum adornatus 134 1 0 0 1 127 Thermofilum carboxyditrophus 1483572 species Desulfurococcales 1 order 114380 3 0 12 310 259 8 0 family 2272 0 2 55 genus 54258 50 1 0 160233 species Ignicoccus hospitalis 0 5 1 Ignicoccus islandicus 54259 species 0 1 32 54253 genus species 54254 Thermosphaera aggregans 1 32 0 1 15 0 genus 477695 Thermogladius calderae 1200300 species 0 15 1 genus 2273 0 80 2 2275 species Desulfurococcus mucosus 1 14 0 94694 species Desulfurococcus amylolyticus 66 1 0 2279 genus 77 2 0 1 12 0 species 2280 Staphylothermus marinus 1 65 0 84599 species Staphylothermus hellenicus family 2307 3 48 0 genus 54247 1 4 0 54248 species Hyperthermus butylicus 1 4 0 0 12 1 genus 54251 1 12 0 species 54252 Pyrolobus fumarii genus 2308 0 32 1 0 32 1 Pyrodictium delaneyi species 1273541 0 2 41 871006 order 30 1 0 family 255472 genus 200414 1 30 0 200415 species Caldisphaera lagunensis 30 1 0 family 871007 0 1 11 0 1 11 genus 105850 species 242703 Acidilobus saccharovorans 11 1 0 8 721 0 2281 order family 118883 0 721 8 0 94 1 genus 12914 0 94 1 Acidianus hospitalis 563177 species genus 69655 1 65 0 0 65 1 Sulfolobus tokodaii species 111955 genus 41980 0 2 49 species 1006005 Metallosphaera cuprina 1 37 0 Metallosphaera sedula 43687 species 0 1 12 genus 2100760 1 59 0 0 59 1 Sulfolobus solfataricus 2287 species 2284 genus 0 3 454 1 67 0 no rank 2641160 Sulfolobus sp. A20 species 1891280 0 67 1 species 43080 Sulfolobus islandicus 275 1 0 1 112 0 species 2285 Sulfolobus acidocaldarius phylum 51967 6 1 0 6 1 0 498845 genus 0 6 1 Candidatus Korarchaeum cryptofilum species 498846 186 12740 0 2 28890 phylum 1 Euryarchaeota 0 16 752 clade 2283796 183967 class 2 Thermoplasmata 1 674 14 0 0 292 4 order 1235850 0 2 89 family 2517203 0 2 89 1 Candidatus Methanomethylophilus 1 1291539 genus 88 1 0 species 1291540 Candidatus Methanomethylophilus alvus 0 2 203 1577788 family 1607807 genus 0 31 1 1577791 species Candidatus Methanoplasma termitum 1 31 0 172 1 0 1080709 genus Candidatus Methanomassiliicoccus intestinalis 1406512 species 0 172 1 8 350 0 order 2301 1 Thermoplasmatales 1 72 2 0 family 46659 2 72 0 genus 2302 48 1 0 2303 species Thermoplasma acidophilum 0 1 24 Thermoplasma volcanium 50339 species 0 1 26 family 1747776 1747777 genus 1 26 0 Cuniculiplasma divulgatum 1673428 species 0 26 1 1 76 0 no rank 1919231 species 1054217 Thermoplasmatales archaeon BRNA1 76 1 0 0 141 2 90142 family 74968 genus 2 141 0 species 74969 Ferroplasma acidiphilum 1 62 0 1 79 0 97393 species Ferroplasma acidarmanus 1 34 0 family 46630 genus 46631 34 1 0 Picrophilus torridus 82076 species 0 1 34 1 30 0 no rank 1234666 methanogenic archaeon ISO4-H5 1495144 species 0 30 1 clade 1803510 78 2 0 379546 genus 78 2 0 Aciduliprofundum boonei species 379547 0 1 61 1 17 0 no rank 2633939 species 673860 Aciduliprofundum sp. MAR08-339 17 1 0 1071 39 0 183968 class Thermococcales 1 order 2258 1 0 1071 39 1 family 2259 1 Thermococcaceae 38 1070 0 genus 2263 6 Thermococcus 1 29 940 0 0 1 32 Thermococcus radiotolerans 187880 species Thermococcus piezophilus species 1712654 0 23 1 species 71997 Thermococcus gorgonarius 1 9 0 0 32 1 Thermococcus chitonophagus 54262 species 2264 species Thermococcus celer 68 1 0 Thermococcus profundus species 49899 0 27 1 277988 species Thermococcus thioreducens 1 11 0 54077 species Thermococcus barossii 1 56 0 0 55 1 Thermococcus siculi 72803 species 1 20 0 187878 species Thermococcus gammatolerans 1 43 0 species 110164 Thermococcus guaymasensis 126 1 0 55802 species Thermococcus barophilus species 172049 Thermococcus sibiricus 23 1 0 Thermococcus litoralis species 2265 0 45 1 0 68 1 Thermococcus paralvinellae species 582419 0 22 1 Thermococcus nautili species 195522 species 1505907 Thermococcus eurythermalis 30 1 0 Thermococcus peptonophilus species 53952 0 21 1 Thermococcus onnurineus 342948 species 0 1 23 4 1 0 species 163003 Thermococcus cleftensis 35 1 0 species 311400 Thermococcus kodakarensis no rank 2627626 0 6 143 species 2016361 Thermococcus sp. EXT12c 14 1 0 33 1 0 species 2008440 Thermococcus sp. 5-4 1 17 0 1042877 species Thermococcus sp. 4557 Thermococcus sp. AM4 246969 species 0 1 42 25 1 0 1674923 species Thermococcus sp. 2319x1 1 12 0 species 122420 Thermococcus sp. P6 Thermococcus pacificus 71998 species 0 18 1 83867 genus 1 10 0 971279 species Palaeococcus pacificus 10 1 0 119 7 0 genus 2260 24 1 0 2261 species Pyrococcus furiosus Pyrococcus abyssi 29292 species 0 1 13 2 1 0 1609559 species Pyrococcus kukulkanii Pyrococcus horikoshii species 53953 0 1 13 species 1008460 Pyrococcus yayanosii 14 1 0 2629106 no rank 2 53 0 0 24 1 Pyrococcus sp. ST04 species 1183377 0 1 29 Pyrococcus sp. NA2 342949 species 4061 32 0 2283794 clade 183925 class 0 20 2252 2252 20 0 2158 order family 2178 0 216 1 216 1 0 2179 genus 0 1 216 Methanothermus fervidus species 2180 1 Methanobacteriaceae 1 2159 family 0 19 2036 0 91 4 genus 145260 Methanothermobacter wolfeii species 145261 0 19 1 0 29 1 no rank 2631116 Methanothermobacter sp. CaT2 866790 species 0 1 29 species 145263 Methanothermobacter marburgensis 1 19 0 species 145262 Methanothermobacter thermautotrophicus 24 1 0 genus 2316 1 455 0 species 2317 Methanosphaera stadtmanae 455 1 0 2172 genus 776 6 0 2 219 0 no rank 2638681 1609968 species Methanobrevibacter sp. YE315 1 101 0 118 1 0 224719 species Methanobrevibacter sp. AbM4 Methanobrevibacter olleyae 294671 species 0 136 1 0 165 1 Methanobrevibacter smithii 2173 species 0 144 1 Methanobrevibacter millerae 230361 species 0 1 112 Methanobrevibacter ruminantium species 83816 0 7 713 2160 genus 2627676 no rank 136 2 0 96 1 0 species 1911685 Methanobacterium sp. MZ-A1 0 1 40 Methanobacterium sp. MB1 1379702 species 877455 species Methanobacterium lacus 168 1 0 Methanobacterium formicicum species 2162 0 1 141 0 153 1 Methanobacterium paludis 868131 species 1 54 0 118062 species Methanobacterium congolense 1 61 0 59277 species Methanobacterium subterraneum 0 12 1809 183939 class order 2182 1809 12 0 5 945 0 2183 family 155862 genus 1 138 0 species 155863 Methanothermococcus okinawensis 1 138 0 0 807 4 genus 2184 1 47 0 species 2188 Methanococcus voltae Methanococcus maripaludis species 39152 0 436 1 Methanococcus vannielii 2187 species 0 1 133 191 1 0 species 42879 Methanococcus aeolicus 864 7 0 family 196117 192 1 0 196119 genus 192 1 0 2189 species Methanotorris igneus 0 6 672 genus 196118 0 1 130 Methanocaldococcus vulcanius species 73913 0 167 1 no rank 2641196 0 1 167 Methanocaldococcus sp. FS406-22 644281 species 61 1 0 species 67760 Methanocaldococcus infernus species 2190 Methanocaldococcus jannaschii 1 56 0 species 1301915 Methanocaldococcus bathoardescens 159 1 0 Methanocaldococcus fervens species 83171 0 1 99 7 376 0 class 183980 376 7 0 order 2231 2232 family 376 7 0 genus 190818 0 2 165 species 565033 Geoglobus acetivorans 1 23 0 0 142 1 Geoglobus ahangari 113653 species genus 54260 0 1 34 1 34 0 54261 species Ferroglobus placidus 0 4 177 genus 2233 84156 species Archaeoglobus profundus 1 19 0 0 1 33 Archaeoglobus fulgidus species 2234 species 58290 Archaeoglobus veneficus 1 53 0 1316941 species Archaeoglobus sulfaticallidus 1 72 0 2290931 clade 91 6478 0 0 39 4457 1 Methanomicrobia 10 class 224756 570264 order 2 143 0 570265 family 0 2 143 570266 genus 0 143 2 0 1 42 Methanocella conradii species 1175444 species 1175445 Methanocella arvoryzae 101 1 0 order 94695 9 Methanosarcinales 1 26 3471 0 0 2 158 family 143067 2222 genus 0 2 158 0 48 1 Methanosaeta harundinacea 301375 species 0 1 110 Methanothrix soehngenii species 2223 1 Methanosarcinaceae 1 2206 family 0 3304 23 99 2 0 1 genus 2220 1 Methanolobus 98 1 0 420950 species Methanolobus psychrophilus 2 2207 genus 1 Methanosarcina 2343 13 0 no rank 2644672 4 501 0 0 116 1 Methanosarcina sp. WWM596 1434103 species 49 1 0 species 1434100 Methanosarcina sp. MTP4 0 1 106 Methanosarcina sp. WH1 species 1434102 Methanosarcina sp. Kolksee 1434099 species 0 1 230 Methanosarcina horonobensis species 418008 0 1 186 0 119 1 Methanosarcina lacustris species 170861 2210 species Methanosarcina thermophila 140 1 0 0 1 230 Methanosarcina mazei species 2209 Methanosarcina acetivorans species 2214 0 1 213 38027 species Methanosarcina siciliae 133 1 0 Methanosarcina vacuolata species 2215 0 176 1 species 2208 Methanosarcina barkeri 1 643 0 0 233 2 genus 2225 29291 species Methanococcoides burtonii 132 1 0 2226 species Methanococcoides methylutens 101 1 0 genus 2321 92 1 0 0 1 92 Methanohalobium evestigatum 2322 species genus 101191 0 1 94 0 1 94 Methanomethylovorans hollandica 101192 species 0 2 281 genus 2175 186 1 0 2176 species Methanohalophilus mahii 0 1 95 Methanohalophilus halophilus species 2177 1 161 0 genus 196136 species 39669 Methanosalsum zhilinae 161 1 0 10 833 0 order 2191 115 1 0 196137 family 0 115 1 2202 genus 1 115 0 2203 species Methanospirillum hungatei family 2194 438 5 0 genus 230355 1 41 0 41 1 0 species 54120 Methanolacinia petrolearia 1 Methanoculleus 1 genus 45989 0 397 4 0 207 1 Methanoculleus marisnigri species 2198 0 1 72 2619537 no rank 1 72 0 species 86622 Methanoculleus sp. MAB1 Methanoculleus bourgensis 83986 species 0 1 117 1 73 0 88404 family 1 73 0 2192 genus 0 1 73 Methanocorpusculum labreanum species 83984 family 1198451 0 3 207 0 1 60 genus 475087 species 475088 Methanosphaerula palustris 60 1 0 395331 genus 0 2 147 0 1 104 Methanoregula formicica species 882104 Methanoregula boonei 358766 species 0 1 43 0 52 2021 1 Halobacteria 7 183963 class 1 Halobacteriales 9 order 2235 0 724 23 0 13 504 1 Haloarculaceae 4 1963268 family 44 2 0 genus 1073987 1 Halorientalis 1 43 1 0 2648975 no rank Halorientalis sp. IM1011 1932360 species 0 43 1 0 228 5 1 Haloarcula 2 2237 genus 50 1 0 species 1932004 Haloarcula taiwanensis Haloarcula hispanica species 51589 0 72 1 2624677 no rank 0 1 37 Haloarcula sp. CBA1115 species 1592728 0 37 1 0 1 67 Haloarcula marismortui 2238 species genus 146825 86 2 0 Halorhabdus utahensis 146826 species 0 1 35 51 1 0 430914 species Halorhabdus tiamatea 1 50 0 203135 genus 0 50 1 Halomicrobium mukohataei 57705 species 0 92 2 63743 genus 1 22 0 2257 species Natronomonas pharaonis 416273 species Natronomonas moolapensis 1 70 0 family 2236 3 Halobacteriaceae 1 211 9 0 1 15 0 332246 genus 0 1 15 Halalkalicoccus jeotgali species 413810 0 51 2 Halanaeroarchaeum 1 genus 1656823 1 0 50 1 Halanaeroarchaeum sulfurireducens 1604004 species Halobacterium 1 2239 genus 3 0 100 4 2668073 no rank 32 1 0 Halobacterium sp. DL1 species 751944 0 32 1 Halobacterium hubeiense species 1407499 0 1 20 45 1 0 2242 species Halobacterium salinarum 1980514 genus 0 1 42 Halodesulfurarchaeum formicicum species 1873524 0 1 42 775 14 0 order 1644060 7 Natrialbales 1 768 13 0 family 1644061 7 Natrialbaceae 1 genus 203193 0 68 1 229731 species Halobiforma lacisalsi 1 68 0 0 1 96 genus 63742 1 96 0 species 13769 Natrialba magadii 2 89 0 genus 121871 species 62320 Haloterrigena turkmenica 1 71 0 588898 species Haloterrigena daqingensis 18 1 0 genus 353799 0 180 1 0 180 1 Halostagnicola larsenii species 353800 64 1 0 1269201 genus 64 1 0 no rank 2621923 1 64 0 species 1333523 Salinarchaeum sp. Harcht-Bsk1 0 1 54 genus 29287 29288 species Natronococcus occultus 54 1 0 1 Natronobacterium 1 genus 2256 0 2 68 44930 species Natronobacterium gregoryi 1 67 0 genus 387342 1 82 0 0 82 1 Halopiger xanaduensis species 387343 genus 88723 0 60 2 2622230 no rank 0 1 36 1 36 0 species 406552 Natrinema sp. J7-2 1 24 0 species 69525 Natrinema pellirubrum 1644055 order 0 515 14 1 family 1644056 1 Haloferacaceae 299 7 0 genus 60846 0 1 34 0 1 34 Halogeometricum borinquense species 60847 293431 genus 82 1 0 0 1 82 Haloquadratum walsbyi 293091 species 3 2251 genus 1 Haloferax 182 4 0 59 1 0 species 2252 Haloferax mediterranei 0 1 75 Haloferax volcanii 2246 species 0 1 45 Haloferax gibbonsii species 35746 no rank 2678336 1 22 0 0 22 1 halophilic archaeon DL31 756883 species 1963271 family 1 Halorubraceae 1 194 6 0 0 1 63 1209988 genus Halopenitus persicus 1048396 species 0 1 63 0 58 2 1 Salinigranum 1 genus 1644057 0 1 57 Salinigranum rubrum 755307 species 2 72 0 genus 56688 0 1 10 Halorubrum lacusprofundi species 2247 0 1 62 Halorubrum trapanicum 29284 species 0 15 1 clade 1783276 0 1 15 1801631 phylum 1 15 0 2490204 genus 1920749 species Candidatus Micrarchaeota archaeon Mia14 15 1 0