members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 31 32209 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4754 40207910 140 1 Bacteria 40111125 0 4449 superkingdom 2 3415 9 0 200930 phylum Deferribacteres 1 68337 class 0 9 3415 7 order 191393 0 3408 8 Deferribacterales 1 8 38 Deferribacteraceae 1 family 191394 0 7 3400 887 0 2 53572 genus 1 Deferribacter 3 Deferribacter desulfuricans species 197162 1 0 884 7 2 0 976 genus 117999 1 Denitrovibrio 118000 species 1 0 969 Denitrovibrio acetiphilus 1 0 798 genus 545865 477976 species 798 0 1 Calditerrivibrio nitroreducens 1 701 0 2351 genus Flexistipes sinusarabici 1 0 701 2352 species 29 0 7237 200783 phylum 7237 0 29 class 187857 1 Aquificae 15 3 1 Desulfurobacteriales 0 6 1634 1485951 order 7 5 0 1631 558314 family 1 Desulfurobacteriaceae Desulfurobacterium 1 64159 genus 2 0 1331 5 species 64160 0 1326 1 Desulfurobacterium thermolithotrophum 4 1 Thermovibrio 293 0 2 genus 171868 0 1 289 species 228745 Thermovibrio ammonificans 7 5588 0 22 32069 order 1 Aquificales 90150 no rank 505 2 0 1 Thermosulfidibacter 0 505 2 genus 412592 15 Thermosulfidibacter takaii 0 1 490 species 412593 17 family 224027 0 6 1970 Hydrogenothermaceae 1 1 0 2 590 182899 genus 1 Persephonella 1 0 589 species 309805 Persephonella marina 1 Sulfurihydrogenibium 3 0 1363 212790 genus 25 no rank 2619248 904 1 0 Sulfurihydrogenibium sp. YO3AOP1 904 0 1 436114 species Sulfurihydrogenibium azorense species 309806 1 0 434 13 0 3106 64898 family 1 Aquificaceae 5 28 6 0 1834 168657 genus 1 Hydrogenobaculum 2622382 no rank 1806 0 5 Hydrogenobaculum sp. 3684 391 0 1 species 547143 547145 species 391 0 1 Hydrogenobaculum sp. SHO species 547144 0 391 1 Hydrogenobaculum sp. HO Hydrogenobaculum sp. Y04AAS1 380749 species 242 0 1 Hydrogenobaculum sp. SN 391 0 1 547146 species 1 Hydrogenobacter 0 281 2 genus 939 2 Hydrogenobacter thermophilus species 940 0 279 1 1 75905 genus 398 0 3 Thermocrinis 1 Thermocrinis ruber 75906 species 0 257 1 Thermocrinis albus 140 0 1 species 136094 2713 genus 1 588 0 Aquifex aeolicus 63363 species 0 1 588 0 13 5611 40117 phylum Nitrospira 1 203693 class 5611 0 13 23 12 0 5588 order 189778 1 Nitrospirales 29 31 1 Nitrospiraceae 0 5559 11 189779 family 1 1339 0 28261 genus 1 0 1339 species 28262 Thermodesulfovibrio yellowstonii 3 Leptospirillum 1 179 genus 0 1416 4 261385 species group 565 1 0 Leptospirillum sp. Group II 'CF-1' 0 565 1 species 1660083 species group 261386 0 1 605 Leptospirillum ferriphilum 0 605 1 178606 species species group 655606 1 0 243 Leptospirillum ferrooxidans species 180 1 0 243 1 Nitrospira 2773 0 5 1234 genus 5 Nitrospira moscoviensis species 42253 0 1 1084 Candidatus Nitrospira inopinata 409 0 1 species 1715989 1 0 535 species 1325564 Nitrospira japonica Nitrospira defluvii 740 0 1 species 330214 1497 5 0 phylum 200938 7 0 1497 5 118001 class 1 Chrysiogenetes 8 Chrysiogenales 1 189769 order 4 0 1490 3 Chrysiogenaceae 1 189770 family 1482 0 3 5 Desulfurispirillum 1 genus 393029 0 1479 2 936456 species 0 1 1474 Desulfurispirillum indicum 14626270 368 0 1783270 clade 14619649 0 354 68336 clade 33 1 Bacteroidetes 325 0 14602691 phylum 976 0 20536 23 117747 class 1 Sphingobacteriia 10 51 22 0 20526 order 200666 1 Sphingobacteriales 78 20475 0 21 84566 family 1 Sphingobacteriaceae genus 28453 6218 0 6 Sphingobacterium 1 21 1116 0 1 1010 species Sphingobacterium mizutaii 2609468 no rank 0 4 5081 Sphingobacterium sp. 21 species 743722 1491 0 1 Sphingobacterium sp. G1-14 species 2003121 0 1141 1 species 1933220 1 0 1080 Sphingobacterium sp. B29 Sphingobacterium sp. ML3W 0 1 1369 species 1538644 84567 genus 6667 0 6 Pedobacter 1 22 1 0 1043 species 188932 Pedobacter cryoconitis Pedobacter ginsengisoli 1 0 1320 363852 species 2628915 no rank 1422 0 1 Pedobacter sp. PACM 27299 1727164 species 1 0 1422 Pedobacter heparinus 0 1 1313 species 984 Pedobacter steynii 430522 species 1547 0 1 1495 0 1 genus 929509 Solitalea canadensis 1495 0 1 995 species 3 1 Mucilaginibacter 0 4 3296 423349 genus 1 0 992 species 1234841 Mucilaginibacter sp. BJC16-A31 1 1172 0 2617802 no rank Mucilaginibacter sp. PAMC 26640 0 1172 1 species 1300914 Mucilaginibacter gotjawali species 1550579 0 1 1129 84568 no rank 0 1 1046 0 1 1046 species 1986952 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1649482 genus 1675 0 2 Pseudopedobacter 1 8 1667 0 1 species 151895 Pseudopedobacter saltans Bacteroidetes Order II. Incertae sedis 1 1100069 order 6101 0 7 69 1 Rhodothermaceae 6032 0 6 family 563843 47 23 genus 29548 0 2657 2 Rhodothermus 1 Rhodothermus marinus species 29549 2634 0 1 no rank 1196022 1 2250 0 Rhodothermaceae bacterium RA 0 2250 1 species 1779382 146918 genus 1078 0 2 Salinibacter 1 2 Salinibacter ruber species 146919 0 1 1076 1853228 class 0 10839 16 Chitinophagia 1 8 64 1 Chitinophagales 0 10831 15 1853229 order 1 Chitinophagaceae 0 10767 14 family 563835 29 Filimonas 1 genus 649460 1650 0 2 16 species 477680 0 1 1634 Filimonas lacunae 766 1 0 398041 genus Flavisolibacter tropicus 0 1 766 1492898 species 0 3 3102 genus 79328 1 Chitinophaga 9 1 0 1092 species 2029983 Chitinophagaceae bacterium 13 species 79329 0 2001 1 Chitinophaga pinensis Arachidicoccus 1 1769012 genus 1066 0 2 4 1062 0 1 no rank 2636138 Arachidicoccus sp. BS20 1 0 1062 1850526 species Niabella 1 genus 379899 3 0 2663 7 Niabella soli 446683 species 0 1251 1 0 1 1405 species 1176587 Niabella ginsenosidivorans 4 Niastella 1 genus 354354 1491 0 2 species 354356 1 0 1487 Niastella koreensis 11 0 7 1939 1937959 class 1 Saprospiria Saprospirales 1 1936988 order 6 0 1928 18 2 1937961 family 3 0 1457 Haliscomenobacteraceae 1 16 1 Haliscomenobacter 2 0 1455 2349 genus 2350 species 1 0 1439 Haliscomenobacter hydrossis 2 453 0 89374 family 12 Saprospira 1 genus 1007 0 453 2 0 1 441 species 1008 Saprospira grandis 0 69 14348535 class 200643 1 Bacteroidia 132 1970189 order 6209 0 8 Marinilabiliales 1 8 0 2 1719 558415 family 8 1 Alkalitalea 1719 0 2 genus 1193324 889453 species 0 1711 1 Alkalitalea saponilacus family 1573805 2085 1 0 genus 2060722 1 2085 0 Marinifilaceae bacterium SPP2 1717717 species 0 2085 1 1970190 family 747 1 0 1 747 0 1970191 genus Salinivirga cyanobacteriivorans 1307839 species 0 747 1 5 1 Prolixibacteraceae 0 1650 3 1471398 family 8 1645 0 2 1471399 genus 1 Draconibacterium 1168034 species 0 1637 1 Draconibacterium orientale 2947 order 171549 60 0 14342194 Bacteroidales 1 no rank 185291 1921 1 0 0 1 1921 1400053 species Bacteroidales bacterium CF 1853231 family 0 3 27601 Odoribacteraceae 1 9 4 0 27592 2 genus 283168 1 Odoribacter 28118 species 1 0 27588 Odoribacter splanchnicus family 171550 110763 0 5 Rikenellaceae 1 28 39 1611681 genus 0 2 1833 Mucinivorans 1 1433126 species 0 1794 1 Mucinivorans hirudinis 0 108902 2 239759 genus 1 Alistipes 24 Alistipes finegoldii 0 1 108878 species 214856 3 Barnesiellaceae 1 2005519 family 0 3 158292 115 1 Barnesiella 158289 0 2 397864 genus Barnesiella viscericola species 397865 1 0 158174 Bacteroidaceae 1 family 815 11 0 3972190 86 1 Bacteroides 3972104 0 10 816 genus 74944 0 666552 1 817 species Bacteroides fragilis 0 417591 1 818 species Bacteroides thetaiotaomicron Bacteroides caecimuris 307888 0 1 species 1796613 28113 species 0 1 65217 Bacteroides heparinolyticus 1 0 2095434 species 28116 Bacteroides ovatus Bacteroides caccae species 47678 0 1 54679 species 246787 0 1 152163 Bacteroides cellulosilyticus 290053 species 1 0 79603 Bacteroides helcogenes 28119 species 0 58033 1 Bacteroides zoogleoformans 139 Tannerellaceae 1 2005525 family 3219307 0 7 149 3 0 3202523 375288 genus 1 Parabacteroides Parabacteroides distasonis species 823 0 1 1508481 2649774 no rank 1 1693893 0 Parabacteroides sp. CT06 1 0 1693893 2025876 species Tannerella 1 genus 195950 16645 0 3 34 species 28112 0 12432 1 Tannerella forsythia 1 4179 0 2620507 no rank 712710 species 4179 0 1 Tannerella sp. oral taxon HOT-286 1 Prevotellaceae 0 210111 11 171552 family 11 0 10 210100 genus 838 1 Prevotella 400 Prevotella melaninogenica 28132 species 4507 0 1 1 0 4301 species 76123 Prevotella enoeca 52227 species 0 11081 1 Prevotella dentalis Prevotella ruminicola 0 1 7527 839 species 0 1 4531 1177574 species Prevotella jejuni 0 2539 1 2638335 no rank 2539 0 1 652716 species Prevotella sp. oral taxon 299 Prevotella denticola species 28129 1 0 5992 Prevotella fusca 0 4955 1 589436 species Prevotella intermedia 1 0 164267 species 28131 5 0 2573 3 2005523 family 1 Paludibacteraceae 2 0 2568 346096 genus 1 Paludibacter 5 Paludibacter propionicigenes 0 2563 1 species 185300 0 5 6618426 333046 no rank genus 909656 0 6617344 3 5433469 0 1 821 species Bacteroides vulgatus 376805 species 1 0 94009 Bacteroides salanitronis 1089866 0 1 species 357276 Bacteroides dorei 1 genus 511434 0 1082 2 Candidatus Azobacteroides 1 511435 species 1 0 1081 Candidatus Azobacteroides pseudotrichonymphae 4 0 6352 family 171551 1 Porphyromonadaceae 16 1 Porphyromonas 6336 0 3 836 genus 9 0 1 1049 species 28123 Porphyromonas asaccharolytica 0 5278 1 837 species Porphyromonas gingivalis 2005520 family 11711 0 6 Proteiniphilum 1 genus 294702 4371 0 2 6 1 0 4365 1642647 species Proteiniphilum saccharofermentans Fermentimonas 1 1784836 genus 2957 0 2 1 0 2956 1 species 1562970 Fermentimonas caenicola 6 0 2 4383 genus 307628 1 Petrimonas Petrimonas mucosa 0 4377 1 1642646 species 117743 class 0 169425 146 Flavobacteriia 1 98 192 1 Flavobacteriales 145 0 169327 200644 order 3 0 280 no rank 313602 2 159 0 2 genus 336809 1 Candidatus Sulcia Candidatus Sulcia muelleri 1 0 157 336810 species 1 0 121 1940138 genus 1 0 121 species 1415657 Candidatus Walczuchella monophlebidarum Cryomorphaceae 1 0 1 family 246874 0 3 1023 family 1853230 1 Crocinitomicaceae 1 53 1022 0 2 332102 genus 1 Fluviicola Fluviicola taffensis species 191579 0 1 969 1 Flavobacteriaceae 83606 0 103 family 49546 3046 853 1 0 1209327 genus species 1803846 0 853 1 Flavivirga eckloniae genus 112040 0 1 875 species 63186 0 875 1 Zobellia galactanivorans 286104 genus 2 1364 0 2615021 no rank 1364 0 2 Winogradskyella sp. J14-2 0 1 686 species 1936080 species 754409 0 678 1 Winogradskyella sp. PG-2 9 1 Siansivirga 0 2 809 genus 1204360 1 0 800 species 762954 Siansivirga zeaxanthinifaciens 6 292691 genus 0 3094 5 Gramella 1 1486245 species 873 0 1 Gramella flava 0 987 1 2126553 species Gramella sp. SH35 411153 species 1 0 773 Gramella forsetii Gramella sp. LPB0144 0 1 455 species 1913577 261827 genus 1 1065 0 Algibacter alginicilyticus species 1736674 1 0 1065 Dokdonia 1 genus 326319 1591 0 4 15 Dokdonia donghaensis 0 1 536 species 326320 2 0 1040 2615033 no rank Dokdonia sp. MED134 494 0 1 313590 species species 983548 546 0 1 Dokdonia sp. 4H-3-7-5 1 0 2 839 genus 358023 1 Lutibacter Lutibacter profundi 0 1 838 species 1622118 104267 genus 0 3180 5 Tenacibaculum 1 9 584609 species 927 0 1 Tenacibaculum jejuense species 669041 1 0 723 Tenacibaculum dicentrarchi 835 0 1 1850252 species Tenacibaculum todarodis Tenacibaculum maritimum 107401 species 0 1 686 416 1 0 216431 genus 313588 species 0 416 1 Croceibacter atlanticus 114 Myroides 1 genus 76831 7001 0 5 Myroides profundi 1 0 588 480520 species no rank 2642485 0 2 1392 0 1 694 species 1583100 Myroides sp. A21 Myroides sp. ZB35 0 1 698 species 1458492 Myroides odoratimimus 4907 0 1 76832 species 1 Formosa 3 0 915 genus 225842 1 0 914 2 2644710 no rank 0 600 1 species 1336795 Formosa sp. Hel3_A1_48 Formosa sp. Hel1_33_131 1 0 314 species 1336794 Cellulophaga 1 genus 104264 0 2846 4 6 species 76594 1 0 1152 Cellulophaga baltica 848 0 1 species 59600 Cellulophaga algicola 840 0 1 979 species Cellulophaga lytica genus 2700084 0 761 1 1850246 species 0 1 761 Lutibacter sp. LPB0138 Flavobacterium 1 genus 237 0 10412 9 23 Flavobacterium branchiophilum 0 1 1139 55197 species 986 species 1 0 2836 Flavobacterium johnsoniae species 312277 0 1 865 Flavobacterium indicum Flavobacterium commune species 1306519 977 0 1 Flavobacterium columnare 1 0 1556 species 996 0 827 1 96345 species Flavobacterium psychrophilum Flavobacterium gilvum 1492737 species 1 0 1247 species 1763534 1 0 942 Flavobacterium crassostreae 1 849 0 83612 genus 57029 species 0 1 849 Psychroflexus torquis 734 0 1 393005 genus 1 0 734 species 2069432 Tamlana sp. UJ94 3 0 1875 3 111500 genus 1 Muricauda Muricauda ruestringensis species 111501 0 984 1 Muricauda lutaonensis 0 1 888 516051 species 2 0 2029 no rank 61432 Flavobacteriaceae bacterium 3519-10 1 0 1166 531844 species species 1150389 1 0 863 Flavobacteriaceae bacterium UJ101 Capnocytophaga 1 1016 genus 15 0 18632 77 Capnocytophaga gingivalis 0 1 810 1017 species Capnocytophaga sputigena 0 1983 1 1019 species Capnocytophaga leadbetteri 0 1 3444 species 327575 Capnocytophaga cynodegmi 0 1 1047 species 28189 species 1018 0 986 1 Capnocytophaga ochracea Capnocytophaga canimorsus species 28188 1043 0 1 Capnocytophaga haemolytica 0 1 720 species 45243 2640652 no rank 7491 6 0 Capnocytophaga sp. H2931 species 1945657 0 1 657 Capnocytophaga sp. ChDC OS43 0 979 1 209053 species 1945658 species 0 725 1 Capnocytophaga sp. H4358 Capnocytophaga sp. oral taxon 323 0 1161 1 species 1705617 Capnocytophaga sp. oral taxon 864 1316593 species 0 724 1 3245 0 1 1316596 species Capnocytophaga sp. oral taxon 878 1848904 species 0 1 1031 Capnocytophaga stomatis 19 Zunongwangia 1 genus 417127 2 0 1087 0 1068 1 species 398743 Zunongwangia profunda 4 0 2131 291183 genus 1 Lacinutrix 15 1317 2 0 no rank 2647285 Lacinutrix sp. 5H-3-7-4 species 983544 622 0 1 Lacinutrix sp. Bg11-31 species 2057808 0 1 695 species 1486034 0 799 1 Lacinutrix venerupis 1176327 genus 515 1 0 1 515 0 2636237 no rank Aureitalea sp. RR4-38 2094025 species 515 0 1 genus 1518147 1 0 943 Wenyingzhuangia fucanilytica 0 943 1 species 1790137 7 genus 252356 5 0 3088 Maribacter 1 2615042 no rank 3 2249 0 Maribacter sp. 1_2014MBL_MicDiv species 1644130 0 1 906 Maribacter sp. HTCC2170 0 698 1 313603 species Maribacter sp. T28 0 645 1 1836467 species species 1178778 0 832 1 Maribacter cobaltidurans 153265 genus 665 1 0 Aequorivita sublithincola species 101385 0 1 665 1 1 Seonamhaeicola 1144 0 2 genus 1649495 no rank 2622645 1 1143 0 species 1936081 0 1 1143 Seonamhaeicola sp. S2-3 0 509 1 336276 genus 2615019 no rank 1 509 0 509 0 1 2058135 species Olleya sp. Bg11-27 13 1 Polaribacter 4736 0 6 52959 genus 1774273 species 0 1123 1 Polaribacter vadi 1 0 1046 996801 species Polaribacter reichenbachii 2554 3 0 196858 no rank species 313598 0 710 1 Polaribacter sp. MED152 895 0 1 2058137 species Polaribacter sp. ALD11 1 0 949 species 1529069 Polaribacter sp. BM10 0 737 1 genus 178469 0 1 737 species 616991 Arenibacter algicola 8 genus 363408 0 2511 5 Nonlabens 1 0 638 1 328515 species Nonlabens dokdonensis Nonlabens sediminis 1 0 514 319236 species 2 0 1351 no rank 2615035 Nonlabens sp. MB-3u-79 800 0 1 2058134 species 0 551 1 1476901 species Nonlabens sp. MIC269 1 Robiginitalea 0 999 2 252306 genus 23 species 252307 0 1 976 Robiginitalea biformata Salegentibacter 1 143222 genus 0 783 2 19 2633436 no rank 0 764 1 species 1729720 0 764 1 Salegentibacter sp. T436 genus 389486 572 1 0 0 572 1 2648869 no rank Sediminicola sp. YIK13 0 1 572 species 1453352 2762318 family 21 81496 0 10 17290 0 no rank 2782232 0 1 3160 2782228 genus Chryseobacterium taklimakanense 536441 species 3160 0 1 14130 0 9 59732 genus 1 Chryseobacterium 65 1265445 species 0 1248 1 Chryseobacterium camelliae species 558152 1051 0 1 Chryseobacterium piperi 2593645 no rank 3 4606 0 species 1721091 1246 0 1 Chryseobacterium sp. IHB B 17019 Chryseobacterium sp. T16E-39 2015076 species 2028 0 1 0 1 1332 species 878220 Chryseobacterium sp. StRB126 1 0 1402 species 1685010 Chryseobacterium glaciei 2969 0 1 253 species Chryseobacterium indologenes 1324352 species 1 0 2789 Chryseobacterium gallinarum 111 1 Ornithobacterium 0 50973 2 28250 genus 0 1 50862 species 28251 Ornithobacterium rhinotracheale 121 Riemerella 1 34084 genus 3393 0 2 3272 0 1 species 34085 Riemerella anatipestifer 1 Elizabethkingia 9375 0 6 genus 308865 28 species 172045 2134 0 1 Elizabethkingia miricola Elizabethkingia anophelis 1 0 3067 species 1117645 0 1266 1 species 1756149 Elizabethkingia genomosp. 3 0 1 1161 species 1756150 Elizabethkingia genomosp. 4 Elizabethkingia meningoseptica 238 species 1719 0 1 genus 1013 0 1 465 Weeksella virosa species 1014 1 0 465 0 570 2 family 1333713 Owenweeksia 1 genus 267986 0 570 2 9 species 253245 1 0 561 Owenweeksia hongkongensis 1755828 family 0 1 219 1755829 genus 219 1 0 Ichthyobacterium seriolicida species 242600 0 219 1 39782 family 0 10 1940 Blattabacteriaceae 1 3 1 Blattabacterium 0 9 1937 34098 genus 13 Blattabacterium cuenoti 0 140 1 species 1653831 6 0 1485 2647581 no rank Blattabacterium sp. (Periplaneta americana) species 367488 1 0 268 Blattabacterium sp. (Nauphoeta cinerea) 1 0 172 species 1316444 Blattabacterium sp. (Mastotermes darwiniensis) 39768 species 1 0 249 624186 species 1 0 325 Blattabacterium sp. (Blattella germanica) Blattabacterium sp. (Blatta orientalis) 367806 species 0 1 187 Blattabacterium sp. (Blaberus giganteus) 1186051 species 284 0 1 Blattabacterium punctulatus 0 1 299 species 164514 0 56 45283 768503 class 1 Cytophagia 157 45126 0 55 768507 order 1 Cytophagales 259 2 390 0 family 1501348 281119 genus 1 227 0 Candidatus Amoebophilus asiaticus species 281120 0 1 227 273135 genus 163 1 0 2641185 no rank 1 0 163 Cardinium endosymbiont of Encarsia pergandiella 249402 species 0 163 1 2 Persicobacteraceae 1 family 1853234 2 0 1776 59740 genus 1 1774 0 no rank 2664020 1774 0 1 1774 0 1 species 1085624 Persicobacter sp. JZB09 1 Hymenobacteraceae 16 0 20263 family 1853232 63 52 genus 1379908 0 4 3589 Rufibacter 1 2425 2 0 2639626 no rank 1379909 species 1 0 1104 Rufibacter sp. DG15C 1 0 1321 species 1379910 Rufibacter sp. DG31D Rufibacter tibetensis species 512763 0 1 1112 114 Hymenobacter 1 genus 89966 0 8 13768 Hymenobacter swuensis species 1446467 0 1740 1 5 0 9771 no rank 2615202 0 1 2335 species 1484118 Hymenobacter sp. PAMC 26628 Hymenobacter sp. DG25A 1202 0 1 1385663 species Hymenobacter sp. PAMC 26554 species 1484116 1 0 2077 species 1385664 0 1 1515 Hymenobacter sp. DG25B Hymenobacter sp. APR13 species 1356852 2642 0 1 Hymenobacter sedentarius 1411621 species 0 1 2143 5 1 Pontibacter 0 2843 3 genus 323449 Pontibacter akesuensis 1626 0 1 species 388950 400092 species 0 1 1212 Pontibacter korlensis 40 Cytophagaceae 1 89373 family 0 16 11877 978 genus 2 0 1008 Cytophaga 1 27 Cytophaga hutchinsonii 981 0 1 985 species 2 genus 120831 0 1744 2 Dyadobacter 1 Dyadobacter fermentans 94254 species 0 1742 1 3 861914 genus 826 0 2 Fibrella 1 0 823 1 2620963 no rank 823 0 1 species 1834519 Fibrella sp. ES10-3-2-2 105 genus 1 1892 0 1892 0 1 species 106 Runella slithyformis Spirosoma 1 genus 107 0 6 5440 41 Spirosoma radiotolerans 1173 0 1 1379870 species 1211326 species 0 1 1134 Spirosoma aerolatum species 1178516 1 0 920 Spirosoma montaniterrae Spirosoma sp. HA7 1151 0 1 2057025 species 564064 species 0 1021 1 Spirosoma rigui Leadbetterella 1 genus 319458 2 0 927 1 Leadbetterella byssophila 1 0 926 316068 species Cyclobacteriaceae 1 family 563798 5383 0 9 15 1 939 0 246875 genus 1727163 species 939 0 1 Algoriphagus sp. M8-2 Echinicola 1 390846 genus 2 0 1233 7 Echinicola vietnamensis 1226 0 1 390884 species 1 Belliella 0 2 1019 232244 genus 2 species 232259 0 1017 1 Belliella baltica genus 68288 0 2177 3 Cyclobacterium 1 13 Cyclobacterium amurskyense 320787 species 1126 0 1 104 species 0 1038 1 Cyclobacterium marinum 2 family 200667 0 4 3013 Flammeovirgaceae 1 340671 no rank 1605 0 1 Flammeovirgaceae bacterium 311 0 1605 1 1257021 species 1406 0 2 59739 genus 1 Flammeovirga 6 no rank 2637820 0 1 1400 Flammeovirga sp. MY04 species 1191459 1 0 1400 0 1122 2 family 2762301 1 Marivirga 0 2 1122 869806 genus 24 Marivirga tractuosa 1098 0 1 1006 species Bernardetiaceae 1 1937968 family 0 1043 3 2 6 genus 1937972 2 0 1041 Bernardetia 1 1 0 1035 species 999 Bernardetia litoralis phylum 1090 0 14120 22 68 Chlorobia 1 class 191410 22 0 14120 91 1 Chlorobiales 0 21 14052 191411 order 191412 family 13961 0 20 Chlorobiaceae 1 61 0 6173 8 no rank 274493 Chlorobium 1 genus 1091 0 4156 5 14 0 1 958 species 1092 Chlorobium limicola 405 0 1 337090 species Chlorobium chlorochromatii Chlorobium phaeovibrioides 1094 species 0 676 1 Chlorobium phaeobacteroides species 1096 0 2103 1 5 1099 genus 0 2017 3 Pelodictyon 1 34090 species 1 0 936 Pelodictyon phaeoclathratiforme Pelodictyon luteolum species 1100 0 1 1076 3336 0 5 genus 1101 1 Prosthecochloris 5 Prosthecochloris aestuarii species 1102 0 1 829 2632826 no rank 0 3 2502 Prosthecochloris sp. HL-130-GSB species 1974213 0 1 947 Prosthecochloris sp. GSB1 707 0 1 281093 species Prosthecochloris sp. CIB 2401 848 0 1 1868325 species 66 genus 256319 0 3524 4 Chlorobaculum 1 0 1034 1 species 1097 Chlorobaculum tepidum Chlorobaculum parvum species 274539 1 0 1243 274537 species 1 0 1181 Chlorobaculum limnaeum 2 0 867 genus 100715 1 Chloroherpeton 2 865 0 1 species 100716 Chloroherpeton thalassium 2838 7 0 1134404 phylum 5 Ignavibacteria 1 class 795747 0 7 2838 Ignavibacteriales 1 795748 order 2833 0 6 1 family 795749 0 1539 2 Ignavibacteriaceae 1 3 1536 0 1 795750 genus Ignavibacterium album 591197 species 1 0 1536 15 family 1334117 0 1293 3 Melioribacteraceae 1 genus 1134403 1278 0 2 Melioribacter 1 3 species 1134405 0 1 1275 Melioribacter roseus 65842 phylum 5 2117 0 1 Fibrobacteria 0 5 2117 class 204430 4 37 order 218872 0 4 2113 Fibrobacterales 1 7 1 Fibrobacteraceae 2076 0 3 204431 family 24 1 Fibrobacter 0 2069 2 genus 832 Fibrobacter succinogenes 2045 0 1 833 species 0 803 1 phylum 456828 genus 456826 1 0 803 456827 species 0 803 1 Candidatus Cloacimonas acidaminovorans 8 3701 0 phylum 142182 15 Gemmatimonadetes 1 class 219685 0 3701 8 1 Gemmatimonadales 0 7 3686 order 219686 119 21 0 3567 6 family 219687 1 Gemmatimonadaceae 8 genus 173479 3 0 1657 Gemmatimonas 1 Gemmatimonas phototrophica species 1379270 0 1 706 1 0 943 173480 species Gemmatimonas aurantiaca 38 1706036 genus 0 1889 2 Gemmatirosa 1 Gemmatirosa kalamazoonesis 1 0 1851 species 861299 53546 0 58 203691 phylum 254 class 203692 0 58 53546 Spirochaetia 1 1 Brachyspirales 7 0 12828 1643686 order 1 643 Brachyspiraceae 1 143786 family 0 6 12827 1543 Brachyspira 1 genus 29521 5 0 12184 Brachyspira intermedia 0 2136 1 84377 species 4664 0 1 species 52584 Brachyspira pilosicoli Brachyspira hyodysenteriae 1 0 2388 species 159 0 1453 1 species 84378 Brachyspira murdochii order 1643688 9 4383 0 3 Leptospiraceae 1 family 170 0 9 4383 11 1 Leptospira 0 6 3686 171 genus species 173 1242 0 1 Leptospira interrogans 1 0 857 species 174 Leptospira borgpetersenii 172 species 0 444 1 Leptospira biflexa 1 0 454 28183 species Leptospira santarosai Leptospira alstonii species 28452 1 0 678 Turneriella 1 338321 genus 0 2 694 3 1 0 691 29510 species Turneriella parva Spirochaetales 1 order 136 0 41 36081 413 507 0 23 31129 family 137 1 Spirochaetaceae 15 1 Sphaerochaeta 3976 0 4 genus 399320 1 0 1283 1131707 species Sphaerochaeta pleomorpha species 273376 0 1260 1 Sphaerochaeta coccoides 0 1 1418 1131703 species Sphaerochaeta globosa 21872 0 12 157 genus 1 Treponema 198 0 1 1727 species 158 Treponema denticola 0 1813 1 species 88058 Treponema primitia Treponema putidum 0 2621 1 species 221027 Treponema caldarium species 215591 0 1 1170 167 species 0 1 5849 Treponema succinifaciens Treponema brennaborense 0 2468 1 81028 species 0 1 2620 no rank 2638727 species 1539298 0 2620 1 Treponema sp. OMZ 838 1 0 245 160 species Treponema pallidum Treponema paraluiscuniculi 53435 species 0 236 1 1116 0 1 409322 species Treponema pedis Treponema azotonutricium 0 1 1809 species 150829 1948 0 3 genus 146 1 Spirochaeta 51 Spirochaeta thermophila 0 988 1 species 154 species 46355 0 909 1 Spirochaeta africana 1911556 genus 1437 1 0 Sediminispirochaeta smaragdinae 0 1 1437 species 55206 1616789 genus 0 1389 2 Salinispira 1 4 1385 0 1 species 1307761 Salinispira pacifica 1 Borreliaceae 0 4539 17 family 1643685 5 64 2436 0 8 genus 138 1 Borrelia 0 205 1 species 140 Borrelia hermsii species 142 0 1 414 Borrelia turicatae Borrelia parkeri 0 1 400 141 species Borrelia duttonii 40834 species 0 1 258 Borrelia recurrentis 0 1 241 species 44449 Borrelia miyamotoi 47466 species 0 1 676 Borrelia anserina species 143 1 0 178 71 1 Borreliella 0 8 2098 64895 genus 0 209 1 64897 species Borreliella bissettii 1 0 327 species 664662 Borreliella bavariensis Borrelia mayonii 168 0 1 1674146 species 160 0 1 species 62088 Borreliella valaisiana Borreliella burgdorferi 0 292 1 139 species Borreliella afzelii 342 0 1 species 29518 1 0 529 29519 species Borreliella garinii 0 24 39934 32066 phylum Fusobacteriia 1 203490 class 39934 0 24 23 84 order 203491 0 23 39911 Fusobacteriales 1 203492 family 0 12 28117 Fusobacteriaceae 1 31 96 0 26390 9 848 genus 1 Fusobacterium 856 species 1 0 3917 Fusobacterium varium 0 1 1361 species 849 Fusobacterium gonidiaformans species 859 1 0 1730 Fusobacterium necrophorum species 860 0 1 4750 Fusobacterium periodonticum 851 species 1 0 7590 Fusobacterium nucleatum Fusobacterium ulcerans 0 1 2503 861 species 1583098 species 0 1 2522 Fusobacterium hwasookii Fusobacterium mortiferum 850 species 1921 0 1 2 Ilyobacter 1 genus 167639 2 0 1696 167642 species 0 1 1694 Ilyobacter polytropus 1129771 family 0 11710 10 Leptotrichiaceae 1 363 62 genus 32067 5917 0 5 Leptotrichia 1 Leptotrichia buccalis 40542 species 0 1364 1 2633022 no rank 0 4491 3 Leptotrichia sp. oral taxon 847 species 1785996 0 1339 1 1499 0 1 species 712368 Leptotrichia sp. oral taxon 498 0 1653 1 712357 species Leptotrichia sp. oral taxon 212 34104 genus 1 1205 0 1205 0 1 34105 species Streptobacillus moniliformis 168808 genus 0 2 1758 Sneathia 1 2 0 1 1756 species 187101 Sneathia amnii 2467 1 0 32068 genus 826 species 1 0 2467 Sebaldella termitidis phylum 508458 10060 12 0 17 class 649775 0 10060 12 Synergistia 1 649776 order 11 0 10043 Synergistales 1 22 677 10 0 10021 649777 family 1 Synergistaceae 508459 genus 0 6793 2 Cloacibacillus 1 11 Cloacibacillus porcorum 1 0 6782 1197717 species 49894 genus 0 442 2 Acetomicrobium 1 1 441 0 1 97477 species Acetomicrobium mobile 1 Aminobacterium 2 0 486 genus 81466 1 0 485 1 81468 species Aminobacterium colombiense genus 336260 0 1 341 Thermovirga lienii 341 0 1 species 336261 2 genus 81461 0 2 1282 Thermanaerovibrio 1 Thermanaerovibrio acidaminovorans 0 1280 1 species 81462 68297 phylum 5 0 1380 1 1 Dictyoglomia 0 5 1380 class 203486 order 203487 4 1379 0 1379 0 4 203488 family 1 Dictyoglomaceae 2 3 genus 13 0 1377 3 Dictyoglomus 1 Dictyoglomus thermophilum species 14 1 0 852 Dictyoglomus turgidum 513050 species 0 1 522 1 Elusimicrobia 0 9 3219 74152 phylum 1 no rank 99260 1 715 0 uncultured Termite group 1 bacterium 167965 species 715 0 1 1 class 447830 0 1829 4 Endomicrobia 1 2 1783344 order 1828 0 3 Endomicrobiales 1 0 1826 2 1783343 family 1826 0 2 genus 1408194 1408281 species 1143 0 1 Endomicrobium proavitum Candidatus Endomicrobium trichonymphae 0 683 1 1408204 species 3 0 674 class 641853 1 Elusimicrobiales 0 3 674 order 641854 8 1 Elusimicrobiaceae 666 0 2 641876 family 21 0 645 1 423604 genus Elusimicrobium minutum 645 0 1 423605 species 1 Acidobacteria 21 0 10142 57723 phylum 6 0 17 9090 class 204432 1 Acidobacteriia 99 1 Solibacterales 1953 0 4 order 332160 150 1 Solibacteraceae 0 1803 3 332161 family 21 0 1782 2 332162 genus 1 Candidatus Solibacter 8 1 0 1774 species 332163 Candidatus Solibacter usitatus 90 1 Acidobacteriales 0 7038 12 order 204433 Acidobacteriaceae 1 family 204434 6948 0 11 78 0 2463 3 genus 940557 1 Granulicella 25 1184 0 1 species 940615 Granulicella tundricola 1 0 1254 940614 species Granulicella mallensis 8 Terriglobus 1 392733 genus 0 1991 3 392734 species 994 0 1 Terriglobus roseus Terriglobus saanensis species 870903 0 989 1 1 Acidobacterium 2 0 1255 genus 33973 6 Acidobacterium capsulatum 33075 species 0 1 1249 7 1 Candidatus Koribacter 0 2 1161 658061 genus Candidatus Koribacter versatilis 0 1 1154 658062 species Blastocatellia 1 1562566 class 0 3 1046 5 0 1041 2 genus 458032 1 Chloracidobacterium 11 458033 species 1 0 1030 Chloracidobacterium thermophilum clade 2498710 4 475 0 phylum 67814 475 4 0 1 Caldisericia 1 693071 class 0 475 4 693072 order 474 0 3 Caldisericales 1 1 12 1 Caldisericaceae 0 2 473 family 693073 genus 693074 1 461 0 693075 species 0 1 461 Caldisericum exile 9 1838 0 200940 phylum 1838 0 9 67799 class 1 Thermodesulfobacteria 1 1 188710 order 0 1837 8 Thermodesulfobacteriales 1 1 Thermodesulfobacteriaceae 1836 0 7 188711 family 4 2 510 0 2 genus 241192 1 Thermodesulfatator 0 1 508 171695 species Thermodesulfatator indicus 1 0 360 genus 444090 Caldimicrobium thiodismutans 1 0 360 species 1653476 1740 genus 0 962 3 Thermodesulfobacterium 1 5 Thermodesulfobacterium geofontis species 1295609 0 619 1 Thermodesulfobacterium commune 0 338 1 1741 species 0 36486 91 clade 1783257 5475 0 3 phylum 256845 41 5475 0 3 class 1313211 1 Lentisphaeria 1114 1 Victivallales 2 0 5434 order 278082 no rank 1674876 1 4320 0 Victivallales bacterium CCUG 44730 1 0 4320 species 2094242 22 0 3033 204428 phylum 204429 class 0 22 3033 Chlamydiia 1 5 1 Chlamydiales 0 1674 14 order 51291 2 10 809 family 1672 0 13 Chlamydiaceae 1 12 0 1662 1113537 no rank 12 Chlamydia 1 genus 810 12 0 1662 85991 species 0 1 171 Chlamydia pecorum species 813 186 0 1 Chlamydia trachomatis 0 130 1 83559 species Chlamydia suis 83556 species 1 0 221 Chlamydia felis Chlamydia caviae 0 109 1 83557 species 1 0 69 1457141 species Chlamydia avium Chlamydia gallinacea 1 0 121 species 1457153 species 83555 1 0 277 Chlamydia abortus Chlamydia muridarum 0 1 95 83560 species Chlamydia psittaci 83554 species 148 0 1 123 0 1 species 83558 Chlamydia pneumoniae 4 1963360 order 0 1354 7 Parachlamydiales 1 1 2 0 414 family 92714 1 Waddliaceae genus 71666 1 0 413 71667 species 0 1 413 Waddlia chondrophila 323 1 0 family 92712 323 1 0 genus 34093 Simkania negevensis 1 0 323 species 83561 1 1 Parachlamydiaceae 613 0 3 family 92713 181 0 1 genus 282132 Candidatus Protochlamydia naegleriophila species 389348 1 0 181 431 0 1 83551 genus 431 0 1 species 83552 Parachlamydia acanthamoebae 26 0 12445 phylum 74201 1 Verrucomicrobia 5 6 0 4252 class 203494 1 Verrucomicrobiae 7 26 48461 order 4245 0 5 Verrucomicrobiales 1 45 0 4 4219 1647988 family 1 Akkermansiaceae 239934 genus 0 3 4174 Akkermansia 1 26 Akkermansia glycaniphila 1 0 1577 species 1679444 239935 species 0 1 2571 Akkermansia muciniphila no rank 417295 1979 2 0 Verrucomicrobia bacterium 0 1 1053 species 2026799 1 0 926 species 1637999 Verrucomicrobia bacterium IMCC26134 Methylacidiphilae 1 1955630 class 0 5 467 2 1 465 0 4 order 717963 1 Methylacidiphilales 0 3 464 717964 family 1 Methylacidiphilum 464 0 3 511745 genus 1 Methylacidiphilum fumariolicum 0 263 1 species 591154 0 1 200 511746 species Methylacidiphilum infernorum 175 2 0 class 134549 1 Candidatus Xiphinematobacter 2 0 175 genus 134550 1 174 0 1 2648876 no rank Candidatus Xiphinematobacter sp. Idaho Grape species 1704307 0 174 1 0 5567 10 414999 class 1 Opitutae 117 0 2 492 order 415001 1 Puniceicoccales 1 491 0 1 415002 family 0 491 1 442430 genus Coraliomargarita akajimensis species 395922 491 0 1 1 Opitutales 4958 0 7 415000 order 87 54 0 6 4871 family 134623 1 Opitutaceae 2 0 1471 2 178440 genus 1 Opitutus Opitutus terrae 1 0 1469 species 107709 21 1 Lacunisphaera 2 0 1396 1961799 genus 1838286 species 1375 0 1 Lacunisphaera limnophila 278955 no rank 1950 1 0 species 794903 0 1 1950 Opitutaceae bacterium TAV5 134625 phylum 856 0 5 14 1 Kiritimatiellae 5 0 856 1921781 class 1 Kiritimatiellales 0 4 842 order 1921782 6 1 family 1921783 0 836 3 Kiritimatiellaceae 1 835 0 2 1921784 genus 1 Kiritimatiella 62 Kiritimatiella glycovorans 0 773 1 species 1307763 35 0 14677 phylum 203682 0 861 4 class 2517206 12 Candidatus Brocadiales 1 1127829 order 4 0 861 0 849 3 family 1127830 1 Candidatus Brocadiaceae 1 0 2 848 genus 380738 1 Candidatus Kuenenia 5 Candidatus Kuenenia stuttgartiensis 174633 species 0 843 1 Phycisphaerae 1 666505 class 2870 0 7 16 0 1689 2 2483366 order family 2483367 1689 2 0 genus 2483368 2 1689 0 Phycisphaerae bacterium L21-RPul-D3 1940790 species 864 0 1 Phycisphaerae bacterium ST-PulAB-D4 1941349 species 0 1 825 0 4 1165 666506 order 1 Phycisphaerales 9 666507 family 0 3 1156 Phycisphaeraceae 1 10 11 1 Phycisphaera 0 2 1146 genus 666508 547188 species 0 1 1135 Phycisphaera mikurensis 55 class 203683 24 0 10946 Planctomycetia 1 order 2691356 3024 7 0 53 0 7 3024 family 1763524 1 Isosphaeraceae Paludisphaera 1 1763521 genus 0 2 1468 5 Paludisphaera borealis 1387353 species 1463 0 1 genus 466152 0 844 2 Singulisphaera 1 3 Singulisphaera acidiphila 466153 species 1 0 841 17 127 genus 0 659 2 Isosphaera 1 Isosphaera pallida 0 1 642 128 species order 2691355 2 828 0 0 828 2 1914233 family 3 0 2 828 113 genus 1 Gemmata no rank 2622970 825 1 0 Gemmata sp. SH-PL17 species 1630693 825 0 1 2691354 order 0 3 1661 family 2691358 576 0 1 1676125 genus 1 576 0 Thermogutta terrifontis 0 576 1 1331910 species 2691357 family 0 1085 2 123 genus 648 1 0 Pirellula staleyi 1 0 648 species 125 437 0 1 265488 genus Rhodopirellula baltica 1 0 437 265606 species 125 11 0 5378 112 order 1 Planctomycetales 27 126 family 5253 0 10 Planctomycetaceae 1 2 0 2 595 genus 1649480 1 Planctopirus Planctopirus limnophila species 120 1 0 593 32 Fuerstia 1 1936111 genus 0 1071 2 0 1039 1 1891926 species Fuerstia marisgermanicae 36 1 Planctomyces 0 3 2779 118 genus 2743 0 2 no rank 2648843 Planctomyces sp. SH-PL14 0 1 1138 species 1632864 Planctomyces sp. SH-PL62 1636152 species 1605 0 1 1649490 genus 0 781 2 Rubinisphaera 1 3 119 species 778 0 1 Rubinisphaera brasiliensis 3 695 0 2323 no rank clade 1783234 3 0 695 95901 clade 2 471 0 class 2497643 0 2 471 471 0 2 order 2497644 0 471 2 family 2497645 Candidatus Babela 1 1551504 genus 471 0 2 1 species 673862 1 0 470 Candidatus Babela massiliensis 224 1 0 95818 phylum 1895827 no rank 224 1 0 0 224 1 species 2056494 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 2021 1968646 1224 phylum 1 Proteobacteria 1128 1 Oligoflexia 11 0 4584 1553900 class 4 Bdellovibrionales 1 order 213481 3099 0 5 3 0 4 3096 family 213483 1 Bdellovibrionaceae 15 958 genus 0 3 3081 Bdellovibrio 1 33 Bdellovibrio bacteriovorus 0 1 2504 959 species Bdellovibrio exovorus 453816 species 1 0 544 Bacteriovoracales 1 2024979 order 0 5 1481 1 1 Bacteriovoracaceae 0 3 746 263369 family 3 146784 genus 2 0 743 Bacteriovorax 1 5 Bacteriovorax stolpii species 960 738 0 1 1 0 734 1652132 family genus 1652133 1 734 0 Halobacteriovorax marinus species 97084 0 734 1 Gammaproteobacteria 1 class 1236 0 926713 886 1638 7 0 19 7838 order 118969 1 Legionellales 7 0 4 956 118968 family 1 Coxiellaceae 1 293 0 134284 no rank Coxiella-like endosymbiont 0 293 1 1592897 species 776 genus 2 0 656 0 1 562 species 777 Coxiella burnetii no rank 2676648 94 1 0 0 1 94 325775 species Coxiella endosymbiont of Amblyomma americanum 68 444 family 6875 0 14 Legionellaceae 1 445 genus 0 6273 12 Legionella 1 17 species 450 0 1 424 Legionella longbeachae 449 species 1 0 603 Legionella hackeliae 0 1 166 species 2005262 Legionella endosymbiont of Polyplax serrata species 446 2142 0 1 Legionella pneumophila Legionella oakridgensis 1 0 480 species 29423 0 392 1 1867846 species Legionella clemsonensis Legionella waltersii 1 0 497 species 66969 0 1 568 28087 species Legionella sainthelensi Legionella fallonii species 96230 334 0 1 45067 species 319 0 1 Legionella lansingensis Legionella spiritensis species 452 0 331 1 1 534 0 genus 465 534 0 1 451 species Tatlockia micdadei 28 0 11295 1706369 order 1 Cellvibrionales 133 family 1706371 12 0 5655 Cellvibrionaceae 1 33 11 1 Cellvibrio 0 4 2799 genus 10 no rank 2624793 0 2 2009 680 0 1 1945512 species Cellvibrio sp. PSBB023 1987723 species 1 0 1329 Cellvibrio sp. PSBB006 Cellvibrio japonicus 0 779 1 155077 species Simiduia 1 genus 447467 2 0 736 1 Simiduia agarivorans 735 0 1 species 447471 2 0 815 2036021 genus 1 Agarilytica 16 Agarilytica rhodophyticola 0 1 799 1737490 species 1 573 0 genus 2425 species 2426 0 573 1 Teredinibacter turnerae Saccharophagus 1 genus 316625 699 0 2 5 Saccharophagus degradans 0 694 1 86304 species 0 900 4 1706372 family 1 Halieaceae 5 1 Halioglobus 0 3 895 genus 1217416 13 Halioglobus pacificus 930806 species 0 445 1 Halioglobus japonicus 1 0 437 species 930805 1 Microbulbiferaceae 0 5 2753 1706373 family 45 40 Microbulbifer 1 genus 48073 0 4 2708 Microbulbifer aggregans species 1769779 0 1 697 0 868 1 252514 species Microbulbifer thermotolerans species 260552 0 1 1103 Microbulbifer agarilyticus 34 0 6 1854 1706375 family 1 Spongiibacteraceae 1 Oceanicoccus 601 0 2 genus 1084558 1 1 0 600 species 716816 Oceanicoccus sagamiensis 630749 genus 664 0 1 1 664 0 2631504 no rank species 1620392 0 664 1 Spongiibacter sp. IMCC21906 Zhongshania 1 genus 1434050 555 0 2 5 Zhongshania aliphaticivorans 1470434 species 0 550 1 order 1240482 5 0 1427 Orbaceae 1 1240483 family 0 5 1427 2 3 1335631 genus 636 0 2 Frischella 1 Frischella perrara 633 0 1 species 1267021 2 1193503 genus 0 2 789 Gilliamella 1 0 1 787 1196095 species Gilliamella apicola 1 Chromatiales 27133 0 52 order 135613 400 1 Chromatiaceae 0 18 10328 1046 family 84 1369 1 0 no rank 82569 Chromatiaceae bacterium 2141T.STBD.0c.01a 1978339 species 1369 0 1 3 1 Nitrosococcus 0 4 1178 genus 1227 1 0 291 1229 species Nitrosococcus oceani 0 518 1 133539 species Nitrosococcus halophilus 0 366 1 species 473531 Nitrosococcus watsonii 47 1 Thiocystis 0 1642 2 13724 genus Thiocystis violascens 73141 species 0 1595 1 13 0 2 888 genus 156885 1 Thioflavicoccus species 80679 1 0 875 Thioflavicoccus mobilis 1 Candidatus Nitrosoglobus 0 2 200 1980513 genus 5 Candidatus Nitrosoglobus terrae 1630141 species 195 0 1 21 Marichromatium 1 genus 85076 2 0 1482 0 1 1461 37487 species Marichromatium purpuratum 3 1 Allochromatium 1773 0 2 85072 genus Allochromatium vinosum 1770 0 1 species 1049 2 0 1712 genus 53392 1 Thiodictyon 41 Candidatus Thiodictyon syntrophicum 1671 0 1 1166950 species 9 449719 family 0 3 1028 Granulosicoccaceae 1 1 Granulosicoccus 0 2 1019 437504 genus 2 Granulosicoccus antarcticus species 437505 0 1017 1 10730 0 18 family 72276 1 Ectothiorhodospiraceae 111 1 Alkalilimnicola 2 0 1226 133193 genus 42 1 0 1184 species 351052 Alkalilimnicola ehrlichii 2 0 601 genus 1765964 1 Acidihalobacter 7 species 160660 1 0 594 Acidihalobacter prosperus genus 1335745 0 1145 3 Spiribacter 1 10 0 1 816 1335757 species Spiribacter curvatus Spiribacter salinus 1335746 species 0 319 1 genus 85108 2 0 1348 Halorhodospira 1 11 Halorhodospira halophila species 1053 0 1337 1 123 genus 106633 6 0 5005 Thioalkalivibrio 1 Thioalkalivibrio sulfidiphilus 0 1710 1 species 1033854 Thioalkalivibrio nitratireducens species 186931 619 0 1 1 0 837 2621013 no rank 396595 species 1 0 837 Thioalkalivibrio sp. K90mix Thioalkalivibrio versutus 0 997 1 species 106634 Thioalkalivibrio paradoxus 108010 species 0 1 719 genus 1051 2 0 1294 Ectothiorhodospira 1 16 1 1278 0 2684909 no rank Ectothiorhodospira sp. BSL-9 1442136 species 0 1278 1 451214 no rank 2 1871 0 1 Thiohalobacter 0 1871 2 genus 1273155 44 species 585455 1827 0 1 Thiohalobacter thiocyanaticus 15 1 Wenzhouxiangellaceae 993 0 3 family 1676141 1 Wenzhouxiangella 0 2 978 genus 1676142 48 0 1 930 1579979 species Wenzhouxiangella marina 18 255526 family 0 4 1358 Halothiobacillaceae 1 1 Halothiobacillus 0 3 1340 genus 109262 7 559 0 1 species 927 Halothiobacillus neapolitanus 774 1 0 2636392 no rank 1 0 774 1860122 species Halothiobacillus sp. LS2 1 Woeseiaceae 425 0 3 family 1738654 4 1 1 Woeseia 421 0 2 1738655 genus Woeseia oceani 0 420 1 species 1548547 14 32 0 26993 order 135625 1 Pasteurellales 1147 712 family 26979 0 31 Pasteurellaceae 1 1 155493 genus 0 832 2 Gallibacterium 1 1 0 831 750 species Gallibacterium anatis 6 1 Pasteurella 0 3 2607 745 genus 0 1 676 species 754 Pasteurella dagmatis Pasteurella multocida 1925 0 1 747 species 214906 genus 1 805 0 Histophilus somni 731 species 0 1 805 2 genus 476528 2 0 2075 Bibersteinia 1 47735 species 2073 0 1 Bibersteinia trehalosi 6 1422 0 2 genus 2094023 1 Glaesserella Glaesserella parasuis species 738 1416 0 1 4 697331 genus 936 0 2 Basfia 1 [Mannheimia] succiniciproducens 0 932 1 157673 species 13 1 Haemophilus 6 0 7731 genus 724 Haemophilus influenzae 0 2156 1 species 727 2609962 no rank 1 607 0 Haemophilus sp. oral taxon 036 species 712310 1 0 607 0 3239 1 729 species Haemophilus parainfluenzae 0 1 857 species 730 [Haemophilus] ducreyi 0 859 1 species 249188 Haemophilus pittmaniae 1 Mannheimia 0 3034 4 75984 genus 14 Mannheimia varigena 0 909 1 species 85404 1 765 0 no rank 2645054 1432056 species 0 1 765 Mannheimia sp. USDA-ARS-USMARC-1261 Mannheimia haemolytica 1 0 1346 species 75985 26 0 4315 5 713 genus 1 Actinobacillus 1379 0 1 715 species Actinobacillus pleuropneumoniae Actinobacillus suis 1 0 1174 716 species Actinobacillus succinogenes species 67854 0 1 869 Actinobacillus equuli species 718 867 0 1 416916 genus 3 0 2075 Aggregatibacter 1 9 Aggregatibacter aphrophilus 732 species 1186 0 1 714 species 880 0 1 Aggregatibacter actinomycetemcomitans 852 Pseudomonadales 1 order 72274 0 164694 129 64 0 42 25734 468 family 1 Moraxellaceae 0 4214 11 497 genus 1 Psychrobacter 23 402 0 1 species 45610 Psychrobacter urativorans 376 0 1 330922 species Psychrobacter cryohalolentis Psychrobacter alimentarius species 261164 1 0 377 no rank 196806 2474 6 0 Psychrobacter sp. AntiMn-1 species 1720344 1 0 361 Psychrobacter sp. PRwf-1 349106 species 1 0 348 species 571800 0 433 1 Psychrobacter sp. G Psychrobacter sp. P11G5 1 0 332 1699624 species Psychrobacter sp. DAB_AL43B 0 776 1 species 1028416 1699622 species 1 0 224 Psychrobacter sp. P2G3 0 1 562 species 334543 Psychrobacter arcticus 268 genus 469 0 25 18555 Acinetobacter 1 29430 species 861 0 1 Acinetobacter haemolyticus 40214 species 806 0 1 Acinetobacter johnsonii species group 909768 5 6568 0 Acinetobacter lactucae 1785128 species 0 370 1 species 471 0 955 1 Acinetobacter calcoaceticus 0 1 1694 species 48296 Acinetobacter pittii 777 0 1 species 106654 Acinetobacter nosocomialis species 470 0 2772 1 Acinetobacter baumannii Acinetobacter soli 487316 species 0 1 449 202950 species 1 787 0 62977 strain 787 0 1 Acinetobacter sp. ADP1 Acinetobacter junii 0 681 1 species 40215 Acinetobacter indicus 0 1 625 756892 species Acinetobacter schindleri 682 0 1 species 108981 0 484 1 1789224 species Acinetobacter larvae Acinetobacter oleivorans 0 688 1 1148157 species 3328 0 7 196816 no rank Acinetobacter sp. SWBY1 2079596 species 0 1 408 Acinetobacter sp. LoGeW2-3 0 1 584 1808001 species Acinetobacter sp. NCu2D-2 587 0 1 1608473 species Acinetobacter sp. ACNIH2 0 1 347 species 1758189 species 1407071 405 0 1 Acinetobacter sp. TGL-Y2 species 1646498 1 0 467 Acinetobacter sp. TTH0-4 530 0 1 1636603 species Acinetobacter sp. ACNIH1 1 0 755 species 40216 Acinetobacter radioresistens species 106648 1 0 802 Acinetobacter bereziniae Acinetobacter equi 0 1 771 species 1324350 135 Moraxella 1 475 genus 5 0 2901 29433 species 0 1 429 Moraxella ovis Moraxella catarrhalis species 480 1 0 568 963 0 1 species 34062 Moraxella osloensis Moraxella bovoculi species 386891 0 806 1 Pseudomonadaceae 1 family 135621 138108 0 86 986 2 1 Oblitimonas 0 2 844 1849530 genus 1 0 842 species 1697053 Oblitimonas alkaliphila 5004 Pseudomonas 1 genus 286 80 0 132545 Pseudomonas brassicacearum 1714 0 1 species 930166 Pseudomonas cremoricolorata 757 0 1 157783 species Pseudomonas frederiksbergensis 1 0 1681 104087 species 1 0 813 219572 species Pseudomonas antarctica Pseudomonas rhizosphaerae 1149 0 1 species 216142 196821 no rank 30 25616 0 Pseudomonas sp. MRSN12121 1611770 species 973 0 1 Pseudomonas sp. CCOS 191 1 0 901 1649877 species species 1283291 1 0 975 Pseudomonas sp. URMO17WK12:I11 Pseudomonas sp. SWI6 2083051 species 0 671 1 Pseudomonas sp. ATCC 13867 1430 0 1 1294143 species 0 878 1 1338689 species Pseudomonas sp. JY-Q Pseudomonas sp. TKP 867 0 1 species 1415630 1856685 species 1 0 1141 Pseudomonas sp. TCU-HL1 Pseudomonas sp. UW4 species 1207075 0 678 1 species 2083053 0 1 569 Pseudomonas sp. SWI44 species 69328 1 0 784 Pseudomonas sp. VLB120 Pseudomonas sp. HLS-6 2049589 species 0 581 1 Pseudomonas sp. SWI36 0 1 934 species 2083052 species 1259844 1 0 948 Pseudomonas sp. FGI182 Pseudomonas sp. Os17 1500686 species 1 0 1347 1931241 species 782 0 1 Pseudomonas sp. S-6-2 Pseudomonas sp. M30-35 1 0 711 1981174 species 1 0 1088 1898684 species Pseudomonas sp. LPH1 Pseudomonas sp. NC02 1 0 927 2067572 species Pseudomonas sp. LH1G9 0 1 667 species 2083055 1157 0 1 species 1028989 Pseudomonas sp. StFLB209 Pseudomonas sp. FDAARGOS_380 712 0 1 species 2018067 Pseudomonas sp. DR 5-09 0 675 1 1534110 species Pseudomonas sp. PONIH3 species 1636610 759 0 1 Pseudomonas sp. XWY-1 2069256 species 0 1 751 762 0 1 species 1930532 Pseudomonas sp. CC6-YY-74 Pseudomonas sp. St29 1500687 species 1287 0 1 0 440 1 species 1827300 Pseudomonas sp. MYb193 2083054 species 663 0 1 Pseudomonas sp. LG1D9 Pseudomonas sp. GR 6-02 0 1 558 species 1659194 0 1420 1 species 65741 Pseudomonas knackmussii 1071 0 1 237609 species Pseudomonas alkylphenolica 2 0 5774 species group 136842 Pseudomonas chlororaphis 587753 species 4499 0 1 Pseudomonas fragi 1275 0 1 296 species 136845 species group 0 6 19145 10938 0 1 303 species Pseudomonas putida Pseudomonas mosselii 0 1 1761 species 78327 70775 species 0 1 862 Pseudomonas plecoglossicida Pseudomonas monteilii species 76759 0 1 2347 0 1 1349 species 47885 Pseudomonas oryzihabitans species 47880 1888 0 1 Pseudomonas fulva Pseudomonas lurida 244566 species 1 0 661 136841 species group 19128 6 0 0 1 3308 53408 species Pseudomonas citronellolis Pseudomonas mendocina species 300 4386 0 1 Pseudomonas alcaligenes 1895 0 1 43263 species species subgroup 1232139 0 1972 1 1972 0 1 species 1149133 Pseudomonas furukawaii Pseudomonas aeruginosa 0 1 5773 species 287 Pseudomonas resinovorans 1 0 1794 species 53412 species 157782 0 1 1490 Pseudomonas parafulva 0 8229 2 136846 species group 0 7113 1 578833 species subgroup Pseudomonas stutzeri species 316 1 0 7113 Pseudomonas balearica species 74829 1116 0 1 Pseudomonas koreensis 198620 species 0 1587 1 237610 species 1455 0 1 Pseudomonas psychrotolerans Pseudomonas silesiensis 1853130 species 0 700 1 Pseudomonas cerasi 0 902 1 1583341 species 9 17729 0 136843 species group 0 835 1 species 76761 Pseudomonas veronii 0 734 1 species 76758 Pseudomonas orientalis Pseudomonas protegens 1153 0 1 species 380021 294 species 9861 0 1 Pseudomonas fluorescens Pseudomonas trivialis 200450 species 0 1166 1 Pseudomonas corrugata 0 1 774 47879 species Pseudomonas poae 0 644 1 species 200451 75612 species 847 0 1 Pseudomonas mandelii Pseudomonas azotoformans 47878 species 1 0 1715 Pseudomonas versuta species 1788301 0 1 427 Pseudomonas entomophila species 312306 0 1296 1 Pseudomonas alcaliphila 1656 0 1 species 101564 13141 8 0 species group 136849 Pseudomonas syringae group genomosp. 3 251701 species 1 0 1618 Pseudomonas viridiflava 744 0 1 33069 species no rank 2775504 1 0 821 1206777 species 0 1 821 Pseudomonas sp. Lz4W Pseudomonas cichorii 885 0 1 species 36746 46257 species 1 0 1085 Pseudomonas avellanae species subgroup 251698 2 2325 0 Pseudomonas amygdali 47877 species 1227 0 1 0 1 1098 species 29438 Pseudomonas savastanoi 1 5663 0 species subgroup 251695 0 5663 1 species 317 Pseudomonas syringae 3 0 3733 subfamily 351 3733 0 3 genus 352 1 Azotobacter 47 Azotobacter vinelandii 0 1 1413 species 354 0 1 2273 species 353 Azotobacter chroococcum 68 Acidiferrobacterales 1 1692040 order 2112 0 6 family 1692041 2044 0 5 Acidiferrobacteraceae 1 25 22 1744881 genus 1263 0 2 Sulfuricaulis 1 1620215 species 0 1241 1 Sulfuricaulis limicola 3 genus 1692042 0 2 756 Sulfurifustis 1 0 1 753 species 1675686 Sulfurifustis variabilis 118884 no rank 4561 11 0 1 Thiolapillus 0 837 2 1608298 genus 2 Thiolapillus brandeum 1076588 species 0 1 835 469 0 1 clade 198346 species 186490 469 0 1 Candidatus Baumannia cicadellinicola 790 0 3 655184 genus 1 Candidatus Thioglobus 3 1705394 species 0 533 1 Candidatus Thioglobus autotrophicus Candidatus Thioglobus singularis 1427364 species 0 254 1 3 817 0 clade 32036 1 0 340 species 410330 Calyptogena okutanii thioautotrophic gill symbiont 1 0 150 1541743 genus 1 0 150 species 386487 Candidatus Ruthia magnifica 0 327 1 species 113267 Bathymodiolus septemdierum thioautotrophic gill symbiont 920 1 0 genus 349742 920 0 1 1543721 species Sedimenticola thiotaurini genus 1524249 1 728 0 Pseudohongiella spirulinae species 1249552 728 0 1 1024 order 91347 245 0 430657 Enterobacterales 1 1447 2 0 451511 no rank 33 Plesiomonas 1 genus 702 0 1447 2 1 0 1414 703 species Plesiomonas shigelloides 1 Budviciaceae 3 0 828 1903416 family 1 0 2 827 82984 genus 1 Pragia 20 0 807 1 species 82985 Pragia fontium 60 Morganellaceae 1 family 1903414 0 21 12826 21 Morganella 1 581 genus 0 2163 2 582 species 2142 0 1 Morganella morganii 1 Providencia 4 0 2078 genus 586 35 Providencia rettgeri 587 species 670 0 1 0 1 513 species 126385 Providencia alcalifaciens Providencia stuartii species 588 0 860 1 Xenorhabdus 1 626 genus 0 6 3522 32 1 0 454 species 40577 Xenorhabdus poinarii 351679 species 1 0 548 Xenorhabdus hominickii 40576 species 0 900 1 Xenorhabdus bovienii 351671 species 0 565 1 Xenorhabdus doucetiae Xenorhabdus nematophila 0 1023 1 628 species 29487 genus 0 2623 4 Photorhabdus 1 138 species 574560 0 633 1 Photorhabdus temperata 29488 species 854 0 1 Photorhabdus luminescens 1 0 998 291112 species Photorhabdus asymbiotica 1 228 0 genus 637 Arsenophonus symbiont of Lipoptena fortisetosa 0 228 1 634113 species 28 1 Proteus 2152 0 3 583 genus Proteus vulgaris species 585 1 0 785 0 1 1339 species 584 Proteus mirabilis 112 Pectobacteriaceae 1 1903410 family 0 20 20085 1 Pectobacterium 6 0 7289 122277 genus 207 Pectobacterium atrosepticum species 29471 0 1 993 Pectobacterium parmentieri 1905730 species 0 680 1 1 0 651 55208 species Pectobacterium wasabiae Pectobacterium carotovorum species 554 1 0 3363 2042057 species 0 1395 1 Pectobacterium polaris genus 204037 0 8125 6 Dickeya 1 201 species 204039 1 0 1246 Dickeya dianthicola species 1089444 0 1 2450 Dickeya solani species 1778540 1412 0 1 Dickeya fangzhongdai Dickeya dadantii 1095 0 1 species 204038 species 204042 0 1 1721 Dickeya zeae 27 0 2 1482 71655 genus 1 Brenneria Brenneria goodwinii 0 1 1455 1109412 species 34 Sodalis 1 84565 genus 0 5 3077 Sodalis glossinidius species 63612 0 1 758 Sodalis endosymbiont of Henestaris halophilus 1 0 291 1929246 species 1239307 species 0 1215 1 Sodalis praecaptivus species 1486991 779 0 1 Candidatus Sodalis pierantonius Yersiniaceae 1 1903411 family 0 39 44125 166 0 894 2 1745211 genus 1 Chania 14 Chania multitudinisentens 1639108 species 880 0 1 659 1 Yersinia 0 11800 13 629 genus 2653513 no rank 1 490 0 1 0 490 1839800 species Yersinia sp. FDAARGOS_228 0 2625 1 630 species Yersinia enterocolitica 631 species 1 0 498 Yersinia intermedia species 28152 0 545 1 Yersinia kristensenii Yersinia aleksiciae species 263819 1 0 537 1649845 species group 2165 3 0 Yersinia pestis species 632 635 0 1 0 799 1 633 species Yersinia pseudotuberculosis 0 1 731 367190 species Yersinia similis species 29485 0 1 868 Yersinia rohdei 0 616 1 29486 species Yersinia ruckeri Yersinia aldovae 29483 species 0 556 1 Yersinia frederiksenii 2241 0 1 29484 species Rouxiella genus 1565532 71 0 1 1434 0 16 25892 genus 613 1 Serratia 0 1950 1 species 82996 Serratia plymuthica Serratia proteamaculans 28151 species 0 1 1150 0 6332 1 615 species Serratia marcescens Serratia fonticola species 47917 1920 0 1 Serratia rubidaea 1280 0 1 species 61652 Serratia liquefaciens 614 species 1 0 1422 8854 0 8 no rank 2647522 Serratia sp. AS12 719 0 1 species 768490 0 719 1 species 768493 Serratia sp. AS13 Serratia sp. FS14 0 1391 1 1327989 species Serratia sp. ATCC 39006 species 104623 0 1 1132 Serratia sp. MYb239 species 2033438 1 0 1405 Serratia sp. FGI94 1518 0 1 species 671990 488142 species 1011 0 1 Serratia sp. SCBI 1758196 species 0 1 959 Serratia sp. SSNIH1 species 61651 0 1550 1 Serratia ficaria 141 1 Rahnella 0 3814 4 genus 34037 2 2282 0 2635087 no rank Rouxiella sp. ERMR1:05 1073 0 1 species 1805933 741091 species 1209 0 1 Rahnella sp. Y9602 34038 species 0 1 1391 Rahnella aquatilis 2 Gibbsiella 1 genus 929812 1488 0 2 1 0 1486 species 929813 Gibbsiella quercinecans Hafniaceae 1 family 1903412 14663 0 14 31 53 2902 0 3 568 genus 1 Hafnia 1 0 772 2621980 no rank 772 0 1 species 1848580 Hafnia sp. CBA7124 0 2077 1 569 species Hafnia alvei 359 2 0 1336 genus 82982 1 Obesumbacterium Obesumbacterium proteus species 82983 0 1 977 554 1 Edwardsiella 0 8 10394 635 genus 2 3336 0 no rank 2676541 Edwardsiella sp. LADL05-105 0 1 1200 1650654 species Edwardsiella sp. EA181011 1 0 2136 species 1578828 Edwardsiella hoshinae 93378 species 1 0 751 1 0 1115 1821960 species Edwardsiella anguillarum Edwardsiella ictaluri 1 0 1508 67780 species species 1263550 1224 0 1 Edwardsiella piscicida 636 species 0 1906 1 Edwardsiella tarda 67 1 Erwiniaceae 0 27 23459 family 1903409 520 Pantoea 1 53335 genus 0 11 11262 Pantoea alhagi species 1891675 0 1 873 3375 3 0 2630326 no rank Pantoea sp. PSNIH1 species 1484158 1 0 998 Pantoea sp. At-9b 1 0 1172 species 592316 Pantoea sp. PSNIH2 1 0 1205 species 1484157 Candidatus Pantoea carbekii species 1235990 0 350 1 972 0 1 553 species Pantoea ananatis Pantoea rwandensis 1 0 961 1076550 species Pantoea vagans 470934 species 1 0 1903 1654067 species group 1 1665 0 Pantoea agglomerans species 549 1 0 1665 species 66269 0 643 1 Pantoea stewartii genus 551 5965 0 8 Erwinia 1 222 species 1922217 0 1 350 Candidatus Erwinia sp. ErCipseudotaxifoliae species 552 0 734 1 Erwinia amylovora species 1619313 1 0 754 Erwinia gerundensis Erwinia billingiae 182337 species 0 1319 1 338565 species 997 0 1 Erwinia tasmaniensis Erwinia pyrifoliae 79967 species 0 671 1 2622719 no rank 1 918 0 215689 species 0 918 1 Erwinia sp. Ejp617 23 82986 genus 1119 0 2 Tatumella 1 Tatumella citrea species 53336 0 1096 1 2100764 genus 2751 2 0 1393 0 1 species 665913 Pantoea calida 665914 species 1 0 1358 Pantoea gaviniae genus 32199 2040 0 2 Buchnera 1 3 Buchnera aphidicola 0 2037 1 9 species 255 1 0 51228 genus 0 255 1 51229 species Wigglesworthia glossinidia 2338 543 family 312200 0 118 Enterobacteriaceae 1 Cedecea 1 genus 158483 2 0 3444 50 1 0 3394 158822 species Cedecea neteri 22 0 29722 genus 547 1 Enterobacter 2615 20453 0 12 354276 species group Enterobacter ludwigii 0 893 1 299767 species 158836 species 4232 0 3 Enterobacter hormaechei 1 2667 1296536 subspecies 0 1 651 Enterobacter xiangfangensis Enterobacter cloacae complex 'Hoffmann cluster III' 1 0 914 1812934 subspecies 0 1 822 69218 species Enterobacter cancerogenus no rank 2757714 2420 3 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 0 618 2077137 species Enterobacter cloacae complex bacterium 0 1 952 species 2027919 Enterobacter cloacae complex sp. ECNIH7 1 0 850 1915310 species Enterobacter asburiae 0 2963 1 species 61645 Enterobacter kobei 617 0 1 species 208224 Enterobacter cloacae complex 'Hoffmann cluster IV' 0 1 664 species 1812935 1 0 7842 550 species Enterobacter cloacae 9 0 6654 2608935 no rank Enterobacter sp. ODB01 1827481 species 0 710 1 Enterobacter sp. HK169 1868135 species 1 0 398 Enterobacter sp. CRENT-193 species 2051905 797 0 1 species 1166130 1 0 1200 Enterobacter sp. R4-368 0 1 438 1977566 species Enterobacter sp. Crenshaw 1 0 614 species 1560339 Enterobacter sp. E20 0 1 1202 1914861 species Enterobacter sp. SA187 0 723 1 species 1692238 Enterobacter sp. FY-07 Enterobacter sp. 638 species 399742 0 1 572 94 0 4990 3 genus 160674 1 Raoultella 3634 0 1 species 54291 Raoultella ornithinolytica 575 species 1 0 1262 Raoultella planticola 0 128158 5 561 genus 1 Escherichia 1642 species 562 0 1 109500 Escherichia coli 0 1 6610 species 564 Escherichia fergusonii 1 0 7796 species 208962 Escherichia albertii Escherichia marmotae 1 0 2610 species 1499973 115 1 Leclercia 4 0 3625 genus 83654 1036 0 1 83655 species Leclercia adecarboxylata 2 2474 0 no rank 2627398 Leclercia sp. LSNIH3 1 0 1070 species 1920116 1 0 1404 species 1920114 Leclercia sp. LSNIH1 1 168 0 2 genus 409304 1 Candidatus Ishikawaella Candidatus Ishikawaella capsulata species 168169 1 0 167 413496 genus 0 8 8452 Cronobacter 1 312 Cronobacter turicensis 413502 species 1 0 912 413497 species 0 939 1 Cronobacter dublinensis Cronobacter muytjensii 0 1 1298 species 413501 Cronobacter condimenti 1163710 species 996 0 1 Cronobacter universalis species 535744 0 1 1072 Cronobacter sakazakii 28141 species 1741 0 1 Cronobacter malonaticus 1 0 1182 413503 species 65 Kosakonia 1 1330547 genus 0 4251 5 Kosakonia cowanii species 208223 1448 0 1 0 1 1223 283686 species Kosakonia radicincitans Kosakonia sacchari 1 0 812 1158459 species 0 1 703 497725 species Kosakonia oryzae 139 1 0 401618 genus Candidatus Riesia pediculicola 139 0 1 species 401619 18 Pluralibacter 1 1330546 genus 3 0 4136 0 2521 1 61647 species Pluralibacter gergoviae [Enterobacter] lignolyticus species 1334193 1 0 1597 36866 no rank 5 0 5412 Plautia stali symbiont 891974 species 0 1 726 1920109 species 1 0 1339 Enterobacteriaceae bacterium ENNIH2 0 999 1 species 2066051 Enterobacteriaceae bacterium ENNIH1 0 1315 1 species 693444 Enterobacteriaceae bacterium strain FGI 57 species 1920128 0 1 1033 Enterobacteriaceae bacterium ENNIH3 219 1 Salmonella 3 0 15176 590 genus Salmonella enterica 0 1 13602 species 28901 Salmonella bongori 0 1355 1 54736 species 191675 no rank 0 18 2855 18 2855 0 84563 clade 199891 clade 0 1 96 species 1835721 96 0 1 secondary endosymbiont of Trabutina mannipara 331 1 0 genus 1906661 Candidatus Gullanella endobia 331 0 1 species 1070130 genus 1906660 1 299 0 Candidatus Mikella endobia species 1778264 299 0 1 genus 1682492 0 302 1 0 1 302 species 1410383 Candidatus Tachikawaea gelatinosa clade 84564 7 851 0 1 Candidatus Blochmannia 7 0 851 genus 203804 10 0 1 100 251542 species Candidatus Blochmannia chromaiodes Candidatus Blochmannia pennsylvanicus 146 0 1 species 101534 Candidatus Blochmannia floridanus 0 235 1 203907 species 711328 no rank 238 2 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505596 species 0 57 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 1 181 species 1505597 251535 species 1 0 122 Candidatus Blochmannia vafer 1 127 0 2 genus 1906659 1 Candidatus Hoaglandella Candidatus Hoaglandella endobia 1778263 species 126 0 1 1 Candidatus Doolittlea 1 genus 1906657 0 2 231 Candidatus Doolittlea endobia 0 230 1 species 1778262 146507 clade 3 0 618 secondary endosymbiont of Heteropsylla cubana species 134287 0 234 1 0 1 162 568987 genus Candidatus Hamiltonella defensa 138072 species 0 1 162 1 0 222 species 1199245 secondary endosymbiont of Ctenarytaina eucalypti 2 153 0 2 genus 1048757 1 Candidatus Moranella 1048758 species 0 151 1 Candidatus Moranella endobia Klebsiella 1 genus 570 10 0 30922 1664 Klebsiella pneumoniae species 573 1 0 10234 Klebsiella variicola 244366 species 0 1 2382 species 1463165 1 0 1293 Klebsiella quasipneumoniae 0 2 2462 no rank 2608929 1934254 species 0 1 1316 Klebsiella sp. M5al Klebsiella sp. LTGPAF-6F 0 1 1146 species 1905288 Klebsiella oxytoca 0 1 4423 species 571 1134687 species 0 1 2844 Klebsiella michiganensis Klebsiella quasivariicola 0 1 1154 2026240 species 548 species 4466 0 1 Klebsiella aerogenes 1848 Citrobacter 1 544 genus 14 0 25694 7 14319 0 species group 1344959 1 0 6135 546 species Citrobacter freundii Citrobacter freundii complex sp. CFNIH2 species 2066049 0 1 947 67827 species 1886 0 1 Citrobacter werkmanii Citrobacter freundii complex sp. CFNIH3 0 1202 1 2077147 species 0 1 1711 species 57706 Citrobacter braakii Citrobacter freundii complex sp. CFNIH4 0 1380 1 species 2077148 Citrobacter freundii complex sp. CFNIH9 0 1058 1 2077149 species Citrobacter rodentium species 67825 0 1 1447 Citrobacter koseri 545 species 1830 0 1 Citrobacter amalonaticus 35703 species 2732 0 1 Citrobacter farmeri 1 0 1317 species 67824 2644389 no rank 2201 2 0 Citrobacter sp. CFNIH10 1920110 species 0 1 1263 1 0 938 1702170 species Citrobacter sp. FDAARGOS_156 33 1 Lelliottia 3369 0 4 1330545 genus Lelliottia amnigena 1577 0 1 61646 species 1 0 976 species 69220 Lelliottia nimipressuralis 1907578 species 783 0 1 Lelliottia jeotgali 2357 1 Shigella 36966 0 4 620 genus 0 8266 1 623 species Shigella flexneri Shigella dysenteriae 0 11960 1 622 species 0 1 14383 no rank 2629414 species 1813821 1 0 14383 Shigella sp. PAMC 28760 1 1119 0 genus 579 1119 0 1 61648 species Kluyvera intermedia genus 1335483 1 1111 0 563 species 1 0 1111 Shimwellia blattae 50 Methylococcales 1 order 135618 0 5893 13 107 403 family 0 12 5843 Methylococcaceae 1 11 1 Methylococcus 0 940 2 genus 413 Methylococcus capsulatus 414 species 0 929 1 1 Methylovulum 2 0 765 genus 762296 14 Methylovulum psychrotolerans species 1704499 1 0 751 Methylomicrobium 1 39773 genus 0 726 2 3 Methylomicrobium alcaliphilum species 271065 0 723 1 83 genus 416 3305 0 5 Methylomonas 1 Methylomonas methanica 0 1 755 421 species species 702114 1 0 712 Methylomonas koyamae 0 637 1 species 1538553 Methylomonas denitrificans no rank 2608980 1 1118 0 species 1727196 1 0 1118 Methylomonas sp. DH-1 135615 order 569 3 0 868 family 0 3 569 Cardiobacteriaceae 1 15 1 Dichelobacter 554 0 2 genus 869 2 species 870 0 552 1 Dichelobacter nodosus 4 0 1470 order 1934945 1 Immundisolibacterales 17 0 1453 3 family 1934946 1 Immundisolibacteraceae 40 18 1934947 genus 2 0 1413 Immundisolibacter 1 species 1810504 1 0 1395 Immundisolibacter cernigliae 14 1 Vibrionales 34892 0 43 order 135623 1 Vibrionaceae 42 0 34878 641 family 222 31 511678 genus 2064 0 4 Aliivibrio 1 0 1023 1 668 species Aliivibrio fischeri Aliivibrio salmonicida 40269 species 0 1 459 Aliivibrio wodanis 551 0 1 80852 species 1 0 435 genus 2042066 1755811 species 0 1 435 Paraphotobacterium marinum 0 4 3331 genus 657 1 Photobacterium 34 Photobacterium damselae species 38293 0 1 1064 Photobacterium profundum species 74109 1025 0 1 Photobacterium gaetbulicola species 1295392 0 1208 1 485 662 genus 28002 0 30 Vibrio 1 Vibrio nigripulchritudo species 28173 0 855 1 Vibrio gazogenes species 687 0 539 1 Vibrio fluvialis 1152 0 1 676 species species 674 1488 0 1 Vibrio mimicus 10268 0 10 species group 717610 190895 species 1 0 524 Vibrio rotiferianus Vibrio alginolyticus species 663 1873 0 1 680 species 0 1 1309 Vibrio campbellii Vibrio natriegens 691 species 1135 0 1 2315253 species subgroup 2 0 1390 Vibrio diabolicus 0 1 878 species 50719 Vibrio antiquarius 1 0 512 species 150340 species 670 1796 0 1 Vibrio parahaemolyticus 0 357 1 species 766224 Vibrio jasicida 696485 species 0 917 1 Vibrio owensii 669 species 0 967 1 Vibrio harveyi species 45658 1154 0 1 Vibrio scophthalmi species 55601 0 940 1 Vibrio anguillarum 1387 0 2 no rank 2614977 623 0 1 1116375 species Vibrio sp. EJY3 Vibrio sp. 2521-89 species 2014742 1 0 764 0 604 1 species 1435069 Vibrio tritonius Vibrio cholerae 666 species 1 0 1473 212663 species 0 1 420 Vibrio tasmaniensis Vibrio qinghaiensis 1 0 476 species 2025808 Vibrio coralliilyticus 1484 0 1 species 190893 1 375 0 1891919 species group 375 0 1 species 29498 Vibrio tubiashii Vibrio furnissii species 29494 1 0 638 1 0 914 species 52443 Vibrio tapetis species 553239 1 0 578 Vibrio breoganii 1534743 species 628 0 1 Vibrio hyugaensis 2144 0 1 species 672 Vibrio vulnificus 78 824 0 2 genus 246861 1 Grimontia 673 species 1 0 746 Grimontia hollisae 1 Nevskiales 0 1077 4 order 1775403 5 Sinobacteraceae 1 0 7 568386 family 2 0 1065 family 2689614 469322 genus 0 1065 2 Steroidobacter 1 9 Steroidobacter denitrificans species 465721 1056 0 1 1 Alteromonadales 0 52871 104 order 135622 173 Ferrimonadaceae 1 family 267892 0 1265 3 3 44011 genus 0 1262 2 Ferrimonas 1 16 44012 species 0 1 1246 Ferrimonas balearica Pseudoalteromonadaceae 1 267888 family 25 0 12633 45 302 genus 53246 24 0 12588 Pseudoalteromonas 1 288 species 0 821 1 Pseudoalteromonas atlantica no rank 194690 5 2239 0 Pseudoalteromonas sp. SM9913 234831 species 1 0 307 species 1761891 0 1 539 Pseudoalteromonas sp. 13-15 Pseudoalteromonas sp. NC201 474 0 1 species 1514074 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 1720343 434 0 1 0 485 1 283699 species Pseudoalteromonas sp. Bsw20308 0 533 1 394751 species Pseudoalteromonas arctica Pseudoalteromonas phenolica species 161398 0 1 531 Pseudoalteromonas espejiana 1 0 448 species 28107 species 267375 422 0 1 Pseudoalteromonas marina 43662 species 555 0 1 Pseudoalteromonas piscicida 294 0 1 species 176102 Pseudoalteromonas agarivorans Pseudoalteromonas haloplanktis 451 0 1 228 species Pseudoalteromonas tetraodonis 43659 species 1 0 394 species 298657 1216 0 1 Pseudoalteromonas spongiae species 247523 1 0 678 Pseudoalteromonas aliena 453 0 1 species 43658 Pseudoalteromonas rubra Pseudoalteromonas translucida 166935 species 519 0 1 Pseudoalteromonas tunicata species 314281 0 560 1 1 0 695 43657 species Pseudoalteromonas luteoviolacea 678 0 1 1348114 species Pseudoalteromonas piratica 0 1 466 species 28109 Pseudoalteromonas nigrifaciens Pseudoalteromonas issachenkonii 0 1 333 152297 species 3 Moritellaceae 1 family 267891 874 0 3 7 Moritella 1 genus 58050 0 2 871 864 0 1 species 80854 Moritella viscosa family 267894 1396 3 0 67572 genus 0 1396 3 Psychromonas 1 14 357794 species 1 0 710 Psychromonas ingrahamii 1 0 672 2614957 no rank Psychromonas sp. CNPT3 314282 species 0 1 672 8 0 1570 6 family 267893 1 Idiomarinaceae Idiomarina 1 135575 genus 0 5 1562 13 2614829 no rank 0 802 2 Idiomarina sp. X4 1 0 321 species 2055892 Idiomarina sp. OT37-5b species 2100422 0 1 481 Idiomarina loihiensis species 135577 1 0 526 Idiomarina piscisalsi 1 0 221 1096243 species 45 267890 family 14097 0 25 Shewanellaceae 1 215 14052 0 24 22 genus 1 Shewanella 62322 species 1421 0 1 Shewanella baltica Shewanella violacea 60217 species 0 607 1 Shewanella putrefaciens 24 species 0 1 976 Shewanella marisflavi 1 0 462 260364 species Shewanella amazonensis species 60478 0 1 666 Shewanella piezotolerans species 404011 614 0 1 species 271097 722 0 1 Shewanella sediminis 6 2775 0 196818 no rank 1 0 258 species 2059264 Shewanella sp. Pdp11 1 0 495 species 60481 Shewanella sp. MR-7 Shewanella sp. WE21 0 1 280 2029986 species 351745 species 0 853 1 Shewanella sp. W3-18-1 Shewanella sp. ANA-3 species 94122 0 540 1 Shewanella sp. MR-4 species 60480 0 349 1 1 0 730 species 225848 Shewanella psychrophila Shewanella halifaxensis species 271098 1 0 642 Shewanella japonica 504 0 1 93973 species 60961 species 476 0 1 Shewanella woodyi 1 0 461 2018305 species Shewanella bicestrii Shewanella loihica species 359303 1 0 816 species 70864 580 0 1 Shewanella pealeana species 70863 0 625 1 Shewanella oneidensis 1 0 217 192073 species Shewanella denitrificans 56812 species 543 0 1 Shewanella frigidimarina 20 1 Colwelliaceae 9 0 3821 family 267889 24 1 Thalassotalea 0 2 753 1518149 genus 1763536 species 0 1 729 Thalassotalea crassostreae 193 0 6 3048 28228 genus 1 Colwellia species 1967665 634 0 1 Colwellia beringensis 0 1 556 species 28229 Colwellia psychrerythraea 1665 3 0 no rank 196834 Colwellia sp. PAMC 21821 469 0 1 species 1816219 Colwellia sp. PAMC 20917 1816218 species 0 653 1 Colwellia sp. MT41 species 58049 1 0 543 Alteromonadaceae 1 family 72275 17042 0 29 112 261825 genus 541 1 0 Agarivorans gilvus 0 1 541 680279 species 117 Marinobacter 1 2742 genus 0 10 7453 Marinobacter psychrophilus species 330734 1 0 489 Marinobacter adhaerens species 1033846 0 1 1038 1089 0 1 2743 species Marinobacter hydrocarbonoclasticus Marinobacter salinus 1874317 species 636 0 1 no rank 83889 3 0 2674 Marinobacter sp. LQ44 1118 0 1 species 1749259 Marinobacter sp. BSs20148 species 490759 0 1 668 Marinobacter sp. CP1 1671721 species 1 0 888 0 860 1 1420917 species Marinobacter salarius Marinobacter similis 1420916 species 0 1 550 0 1216 3 genus 89404 1 Glaciecola 2 Glaciecola nitratireducens 300231 species 1 0 679 535 1 0 no rank 2618684 species 983545 0 1 535 Glaciecola sp. 4H-3-7+YE-5 4 2 0 522 1621534 genus 1 Paraglaciecola 326544 species 0 518 1 Paraglaciecola psychrophila Lacimicrobium 1 1751872 genus 2 0 1234 14 species 1526571 0 1 1220 Lacimicrobium alkaliphilum 40 1 Alteromonas 10 0 5964 226 genus 1 0 749 species 233316 Alteromonas stellipolaris 0 484 1 287094 species Alteromonas addita Alteromonas mediterranea 314275 species 1 0 1117 Alteromonas naphthalenivorans 231 0 1 715451 species 1 0 635 species 589873 Alteromonas australica Alteromonas macleodii 0 1616 1 species 28108 0 3 1092 2614992 no rank 317 0 1 species 2058133 Alteromonas sp. MB-3u-76 440 0 1 1777491 species Alteromonas sp. Mac1 Alteromonas sp. RW2A1 1 0 335 species 1917158 1 Xanthomonadales 0 58969 54 135614 order 731 638 32033 family 0 39 47116 Xanthomonadaceae 1 1127 17 0 18841 338 genus 1 Xanthomonas Xanthomonas vasicola 0 735 1 species 56459 339 species 0 1 2417 Xanthomonas campestris Xanthomonas translucens species 343 0 1655 1 643453 species group 2 0 3595 Xanthomonas fuscans 366648 species 0 845 1 Xanthomonas citri species 346 0 2750 1 0 1 719 1985254 species Xanthomonas phaseoli Xanthomonas oryzae 347 species 0 1549 1 0 1303 1 56458 species Xanthomonas sacchari Xanthomonas hortorum 56454 species 0 1 962 453 0 1 366650 species Xanthomonas alfalfae Xanthomonas axonopodis 1 0 762 species 53413 0 1 508 species 48664 Xanthomonas fragariae 456327 species 1 0 543 Xanthomonas euvesicatoria Xanthomonas albilineans species 29447 0 1 689 978 0 1 442694 species Xanthomonas perforans Xanthomonas vesicatoria 846 0 1 species 56460 1 Luteimonas 2 0 849 83614 genus 12 837 0 1 2006110 species Luteimonas sp. 100111 Xylella 1 genus 2370 0 2 935 9 2371 species 1 0 926 Xylella fastidiosa 195 Lysobacter 1 genus 68 5886 0 5 Lysobacter enzymogenes 1 0 1292 species 69 species 435897 0 1564 1 Lysobacter capsici Lysobacter gummosus 262324 species 1 0 1418 Lysobacter antibioticus 0 1 1417 species 84531 413 0 9 15803 genus 40323 1 Stenotrophomonas 7115 1 0 995085 species group Stenotrophomonas maltophilia 40324 species 1 0 7115 0 1 2005 species 128780 Stenotrophomonas acidaminiphila 4 4111 0 no rank 196198 Stenotrophomonas sp. WZN-1 2005046 species 0 1097 1 species 1904944 1072 0 1 Stenotrophomonas sp. LM091 1793721 species 1 0 1062 Stenotrophomonas sp. KCTC 12332 Stenotrophomonas sp. MYb57 1827305 species 1 0 880 Stenotrophomonas rhizophila 1004 0 1 216778 species species 83617 1 0 1155 Stenotrophomonas nitritireducens 83618 genus 0 4164 3 Pseudoxanthomonas 1 85 1 0 3016 314722 species Pseudoxanthomonas suwonensis Pseudoxanthomonas spadix species 415229 0 1 1063 133 14 0 11122 1775411 family 1 Rhodanobacteraceae 2 0 1227 75309 genus 1 Rhodanobacter 20 0 1207 1 666685 species Rhodanobacter denitrificans 1522 0 2 genus 70411 1 Frateuria 24 1498 0 1 81475 species Frateuria aurantia 0 890 1 genus 2233801 0 890 1 species 2021234 Xanthomonadales bacterium D13 92 1 Dyella 0 4331 4 genus 231454 Dyella japonica 0 1 1452 231455 species Dyella thiooxydans 0 1 1641 445710 species Dyella jiangningensis species 1379159 1 0 1146 28 0 2 1016 genus 242605 1 Luteibacter species 242606 0 988 1 Luteibacter rhizovicinus 13 323413 genus 2 0 2003 Dokdonella 1 Dokdonella koreensis 0 1990 1 323415 species order 135624 0 38405 29 Aeromonadales 1 160 family 84642 38245 0 28 Aeromonadaceae 1 282 1 Aeromonas 0 31895 18 642 genus 2096 8 10266 0 257493 no rank Aeromonas sp. CU5 0 1045 1 2033033 species Aeromonas sp. ASNIH7 1920107 species 924 0 1 Aeromonas sp. ASNIH5 1461 0 1 species 1758179 species 2033032 1 0 1345 Aeromonas sp. CA23 0 1057 1 1636608 species Aeromonas sp. ASNIH3 Aeromonas sp. ASNIH2 1636607 species 0 1015 1 Aeromonas sp. ASNIH1 1417 0 1 species 1636606 Aeromonas sp. ASNIH4 0 2002 1 species 1636609 0 1 1131 651 species Aeromonas media 1 0 3641 species 654 Aeromonas veronii Aeromonas rivipollensis 1 0 1450 species 948519 Aeromonas hydrophila 0 6353 1 species 644 Aeromonas caviae species 648 0 1106 1 0 1458 1 196024 species Aeromonas dhakensis species 558964 0 1 1293 Aeromonas aquatica 1 0 1854 645 species Aeromonas salmonicida Aeromonas schubertii 652 species 0 1 1247 13 genus 129577 1771 0 2 Oceanimonas 1 no rank 2636315 1758 0 1 511062 species 1758 0 1 Oceanimonas sp. GK1 3 844 0 2 43947 genus 1 Tolumonas Tolumonas auensis 1 0 841 43948 species genus 225143 0 985 3 Oceanisphaera 1 6 Oceanisphaera sp. AMac2203 species 1903694 1 0 372 Oceanisphaera profunda 1416627 species 0 607 1 43 Zobellella 1 genus 347533 0 2 2468 Zobellella denitrificans 1 0 2425 347534 species order 135619 35474 0 70 Oceanospirillales 1 582 0 5157 9 224372 family 1 Alcanivoracaceae 46 0 6 4403 59753 genus 1 Alcanivorax 134 Alcanivorax xenomutans 1247 0 1 species 1094342 species 59754 1 0 409 Alcanivorax borkumensis 2638842 no rank 419 1 0 Alcanivorax sp. NBRC 101098 419 0 1 1113728 species 1306787 species 1 0 1301 Alcanivorax pacificus Alcanivorax dieselolei species 285091 0 893 1 Ketobacter 1 genus 2025617 2 0 708 7 species 1917421 0 1 701 Ketobacter alkanivorans Kangiellaceae 1 1920240 family 0 6 1801 10 12 1 Kangiella 0 5 1791 261963 genus 0 1 473 species 261964 Kangiella koreensis 529 0 1 1144748 species Kangiella sediminilitoris Kangiella geojedonensis species 914150 1 0 318 Kangiella profundi species 1561924 0 1 459 39 Oceanospirillaceae 1 135620 family 12 0 5104 26 1 Marinobacterium 0 1436 2 48075 genus species 1821621 1 0 1410 Marinobacterium aestuarii genus 1537406 561 0 1 1249553 species 0 561 1 Bacterioplanes sanyensis 0 2 604 188907 genus 1 Oleispira 1 Oleispira antarctica species 188908 603 0 1 4 Marinomonas 1 28253 genus 1888 0 4 Marinomonas mediterranea 1 0 549 119864 species no rank 196814 1 851 0 Marinomonas sp. MWYL1 0 1 851 species 400668 1 0 484 936476 species Marinomonas posidonica Thalassolituus 1 187492 genus 576 0 2 4 Thalassolituus oleivorans 0 572 1 species 187493 28256 family 19651 0 31 Halomonadaceae 1 225 no rank 114403 4 268 0 45 1 0 114185 genus Candidatus Carsonella ruddii species 114186 0 1 45 Candidatus Evansia 1 1495768 genus 179 0 2 1 Candidatus Evansia muelleri species 1495769 0 178 1 1 0 44 235572 genus Candidatus Portiera aleyrodidarum 0 44 1 species 91844 6 1 Chromohalobacter 0 2 651 42054 genus Chromohalobacter salexigens species 158080 1 0 645 11 1 Salinicola 1004 0 2 404432 genus Salinicola tamaricis 1771309 species 993 0 1 10 genus 204286 0 2 1020 Cobetia 1 0 1010 1 species 28258 Cobetia marina 11 0 879 2 genus 376488 1 Halotalea species 376489 1 0 868 Halotalea alkalilenta 504090 genus 0 3 2207 Kushneria 1 34 Kushneria konosiri 1 0 1047 698828 species 157779 species 0 1 1126 Kushneria marisflavi 13397 0 15 2745 genus 1 Halomonas 214 Halomonas campaniensis 1 0 420 213554 species 6699 8 0 2609666 no rank species 1949203 528 0 1 Halomonas sp. 'Soap Lake #6' 1971364 species 0 1 757 Halomonas sp. GT 1504981 species 0 755 1 Halomonas sp. KO116 Halomonas sp. 'Soap Lake #7' 1962264 species 1 0 528 Halomonas sp. 1513 1 0 1369 species 1883416 Halomonas sp. SF2003 species 2136172 0 1270 1 Halomonas sp. GFAJ-1 1 0 587 1118153 species Halomonas sp. R57-5 1 0 905 species 1610576 species 507626 0 1104 1 Halomonas chromatireducens 1 0 1430 species 1897729 Halomonas aestuarii 929 0 1 species 1178482 Halomonas huangheensis 115561 species 1 0 992 Halomonas hydrothermalis 0 1 1609 species 475662 Halomonas beimenensis 4 552 0 3 family 191033 1 Oleiphilaceae 141450 genus 2 0 548 Oleiphilus 1 14 Oleiphilus messinensis 1 0 534 141451 species 19 255527 family 0 1466 5 Saccharospirillaceae 1 230494 genus 0 593 2 Reinekea 1 14 Reinekea forsetii 1 0 579 1336806 species Gynuella 1 1445504 genus 0 854 2 9 species 1445505 0 845 1 Gynuella sunshinyii 0 1161 3 224379 family 1 Hahellaceae 3 17 2 0 1158 158481 genus 1 Hahella Hahella chejuensis species 158327 1141 0 1 2 2530 0 33811 no rank gamma proteobacterium HdN1 0 1 1062 species 83406 endosymbiont of unidentified scaly snail isolate Monju 0 1468 1 species 1248727 Thiotrichales 1 72273 order 32 0 16215 9 1089 4 0 family 135617 1 Beggiatoa 1 1021 genus 767 0 2 Beggiatoa leptomitoformis 288004 species 0 1 766 1 Thioploca 1 genus 40751 0 2 322 Thioploca ingrica species 40754 1 0 321 30 135616 family 0 13 5282 Piscirickettsiaceae 1 1 Cycloclasticus 4 0 1345 genus 34067 5 0 1 455 species 1329899 Cycloclasticus zancles 0 2 885 no rank 2621467 Cycloclasticus sp. PY97N 0 398 1 species 728003 0 1 487 385025 species Cycloclasticus sp. P1 genus 40222 0 1250 2 Methylophaga nitratireducenticrescens species 754476 1 0 811 Methylophaga frappieri 439 0 1 species 754477 4 1 Hydrogenovibrio 0 860 2 genus 28884 Hydrogenovibrio crunogenus 39765 species 0 1 856 934 0 1 1237 genus Piscirickettsia salmonis 1238 species 1 0 934 1 Thiomicrospira 0 3 863 genus 933 3 Thiomicrospira aerophila 1 0 468 92245 species 392 0 1 species 147268 Thiomicrospira cyclica Francisellaceae 1 34064 family 14 0 9835 54 genus 262 9419 0 12 Francisella 1 62 Francisella hispaniensis 1 0 757 622488 species 0 386 1 954 species Francisella persica Francisella sp. TX077310 species 573570 0 671 1 573569 species 416 0 1 Francisella sp. TX077308 657445 species 0 1 972 Francisella noatunensis Francisella halioticida 1 0 435 species 549298 no rank 2610885 990 0 2 Francisella sp. MA067296 347 0 1 475375 species 1547445 species 1 0 643 Francisella sp. FSC1006 species 263 1 0 2743 Francisella tularensis 28110 species 0 1 1368 Francisella philomiragia 1542390 species 0 1 619 Francisella sp. CA97-1460 genus 1869285 362 1 0 1 0 362 594679 species Allofrancisella guangzhouensis 1388 28211 class 0 405905 562 Alphaproteobacteria 1 4 0 299 order 255473 1 Parvularculales 1 0 3 298 255474 family 1 Parvularculaceae 2 Parvularcula 1 genus 208215 0 296 2 3 Parvularcula bermudensis species 208216 0 293 1 3 0 2294 8 order 54526 1 Pelagibacterales 6 0 1794 family 1655514 1 Pelagibacteraceae 4 0 2 878 1655516 no rank 1 0 428 744985 species alpha proteobacterium HIMB59 0 1 450 species 859653 alpha proteobacterium HIMB5 1 Candidatus Pelagibacter 1 198251 genus 3 0 912 0 1 331 species 198252 Candidatus Pelagibacter ubique no rank 2647897 1 580 0 Candidatus Pelagibacter sp. IMCC9063 1002672 species 580 0 1 2045213 genus 1 497 0 1 0 497 species 1925548 Candidatus Fonsibacter ubiquis Sphingomonadales 1 order 204457 82 0 57729 426 1 Sphingomonadaceae 45607 0 59 41297 family 471 40 Sphingorhabdus 1 genus 1434046 3 0 1797 2 0 1757 2614947 no rank Sphingorhabdus sp. M41 0 1048 1 1806885 species Sphingorhabdus sp. YGSMI21 709 0 1 species 2077182 0 506 1 genus 2709685 0 506 1 species 266812 Sphingorhabdus flavimaris 7 1 Rhizorhabdus 905 0 2 genus 1649486 Rhizorhabdus dicambivorans species 1850238 898 0 1 Sphingopyxis 1 genus 165697 0 7262 10 175 Sphingopyxis fribergensis species 1515612 0 629 1 no rank 2614943 4 2778 0 0 683 1 species 292913 Sphingopyxis sp. 113P3 Sphingopyxis sp. QXT-31 0 1 806 1357916 species Sphingopyxis sp. MG species 1866325 1 0 630 Sphingopyxis sp. LPB0140 0 1 659 1913578 species Sphingopyxis terrae species 33052 1 0 848 33050 species 1 0 1547 Sphingopyxis macrogoltabida Sphingopyxis alaskensis 0 593 1 species 117207 species 267128 0 1 692 Sphingopyxis granuli 255 0 14061 15 genus 13687 1 Sphingomonas species 93064 0 887 1 Sphingomonas koreensis Sphingomonas taxi 0 1164 1 species 1549858 Sphingomonas panacis 0 1 951 species 1560345 1 0 1018 152682 species Sphingomonas melonis 6 5642 0 no rank 196159 1 0 862 species 1030157 Sphingomonas sp. KC8 0 1 983 species 1390395 Sphingomonas sp. LK11 Sphingomonas sp. Cra20 species 1327635 0 890 1 Sphingomonas sp. NIC1 species 1961362 1083 0 1 Sphingomonas sp. LM7 1 0 803 species 1938607 Sphingomonas sp. MM-1 0 1021 1 745310 species 0 2 2130 160791 species 1 Sphingomonas wittichii 1001 1129 0 1 strain 1283312 Sphingomonas sp. DC-6 Sphingomonas hengshuiensis 1 0 827 species 1609977 Sphingomonas sanxanigenens 1 0 1187 species 397260 63 0 3961 5 165696 genus 1 Novosphingobium Novosphingobium pentaromativorans 1 0 848 species 205844 1 0 1338 158500 species Novosphingobium resinovorum Novosphingobium aromaticivorans 48935 species 1 0 916 796 1 0 no rank 2644732 species 702113 1 0 796 Novosphingobium sp. PP1Y 396 15 0 13447 165695 genus 1 Sphingobium 893 0 1 46429 species Sphingobium chlorophenolicum Sphingobium japonicum 0 1 1031 332056 species 76947 species 0 728 1 Sphingobium herbicidovorans species 120107 922 0 1 Sphingobium cloacae Sphingobium hydrophobicum 1673076 species 0 1 1612 5456 6 0 2611147 no rank 1855519 species 1 0 671 Sphingobium sp. EP60837 Sphingobium sp. YBL2 484429 species 1 0 1212 species 1315974 0 1 1050 Sphingobium sp. TKS 0 929 1 1843368 species Sphingobium sp. RAC03 407020 species 0 1 806 Sphingobium sp. MI1205 Sphingobium sp. SYK-6 species 627192 0 788 1 species 332055 0 1 789 Sphingobium indicum Sphingobium baderi species 1332080 0 683 1 Sphingobium yanoikuyae 13690 species 0 1 937 9 Citromicrobium 1 genus 72173 0 2 650 1 641 0 2630544 no rank 1 0 641 1634516 species Citromicrobium sp. JL477 150203 genus 0 881 2 Blastomonas 1 7 874 1 0 no rank 2626550 874 0 1 1842535 species Blastomonas sp. RAC04 genus 2685927 654 1 0 0 1 654 1921510 species Sphingomonas sp. JJ-A5 0 2 1012 541 genus 1 Zymomonas 46 Zymomonas mobilis 0 966 1 species 542 313 11696 0 22 family 335929 1 Erythrobacteraceae 2800681 genus 0 1175 2 Erythrobacter gangjinensis species 502682 0 752 1 1648404 species 423 0 1 Erythrobacter atlanticus 3205 6 0 no rank 2800788 57 0 3 1805 genus 1041 1 Erythrobacter Porphyrobacter neustonensis species 1112 1 0 579 Erythrobacter litoralis species 39960 0 1 1169 24 1111 genus 0 1400 3 Porphyrobacter 1 2683265 no rank 1376 2 0 1 0 569 1896196 species Porphyrobacter sp. LM 6 Porphyrobacter HT-58-2 species 2023229 807 0 1 1 Croceicoccus 0 3 1430 genus 1295327 39 Croceicoccus naphthovorans 1 0 501 1348774 species Croceicoccus marinus 450378 species 0 1 890 1 732 0 2800682 genus Altererythrobacter namhicola 645517 species 0 1 732 1 447 0 genus 2800685 Altererythrobacter marensis species 543877 1 0 447 genus 1855416 1002 2 0 Erythrobacter seohaensis 0 492 1 species 266951 species 192812 1 0 510 Erythrobacter flavus 2800686 genus 0 2 1173 Altererythrobacter dongtanensis 692370 species 554 0 1 Altererythrobacter mangrovi 0 1 619 species 1982042 Altererythrobacter 1 genus 361177 0 2219 4 66 Altererythrobacter epoxidivorans 0 1 657 361183 species Altererythrobacter ishigakiensis 1 0 661 476157 species Altererythrobacter atlanticus 1267766 species 0 835 1 6 1830 0 order 2800060 Hyphomonadaceae 1 69657 family 0 6 1830 12 7 Hyphomonas 1 genus 85 0 3 1195 Hyphomonas neptunium 0 741 1 81032 species 447 1 0 no rank 2630699 1 0 447 1906738 species Hyphomonas sp. Mor2 1 0 623 2 2723 genus 1 Hirschia Hirschia baltica 0 622 1 species 2724 1999 Rhizobiales 1 356 order 174538 0 210 6 3150 0 no rank 119042 26 Methyloceanibacter 1 1484898 genus 1082 0 2 species 1384459 0 1056 1 Methyloceanibacter caenitepidi Hartmannibacter 1 genus 1572860 0 2 1186 15 1482074 species 1 0 1171 Hartmannibacter diazotrophicus Pseudorhodoplanes 1 1734920 genus 0 2 882 16 species 1235591 866 0 1 Pseudorhodoplanes sinuspersici 16 Methylocystaceae 1 31993 family 2713 0 6 48 Methylocystis 1 133 genus 3 0 1651 0 1 674 655015 species Methylocystis bryophila 929 1 0 no rank 2625913 0 1 929 187303 species Methylocystis sp. SC2 genus 425 0 2 1046 Methylosinus 1 96 Methylosinus trichosporium 0 1 950 426 species 767 family 82115 53 0 57366 Rhizobiaceae 1 0 1589 6 genus 34019 1 Liberibacter 20 311 0 1 species 556287 Candidatus Liberibacter solanacearum Liberibacter crescens 0 511 1 1273132 species 34020 species 1 0 306 Candidatus Liberibacter africanus Candidatus Liberibacter americanus 0 318 1 species 309868 34021 species 0 1 123 Candidatus Liberibacter asiaticus no rank 227292 10 0 12271 7 1 Ensifer 0 2215 3 genus 106591 Ensifer sojae 716925 species 1 0 1078 Ensifer adhaerens 106592 species 1 0 1130 201 Sinorhizobium 1 28105 genus 0 10056 7 1 0 2262 species 382 Sinorhizobium meliloti Sinorhizobium medicae 110321 species 0 1 853 2 2356 0 no rank 2613772 Sinorhizobium sp. CCBAU 05631 species 794846 0 1 891 0 1465 1 species 1842534 Sinorhizobium sp. RAC02 Sinorhizobium americanum species 194963 0 1 1736 1 0 2648 species group 663276 0 1 2648 species 380 Sinorhizobium fredii 1 Shinella 1951 0 2 genus 323620 13 1 0 1938 2643062 no rank Shinella sp. HZN7 species 879274 0 1938 1 40788 34 0 227290 no rank 1 Agrobacterium 9782 0 7 genus 357 219 1 0 1150 359 species Agrobacterium rhizogenes 2 0 5013 species group 1183400 0 1 4067 358 species Agrobacterium tumefaciens Agrobacterium fabrum 0 946 1 species 1176649 2167 2 0 no rank 2632611 1171 0 1 1842536 species Agrobacterium sp. RAC06 1 0 996 861208 species Agrobacterium sp. H13-3 species 373 1233 0 1 Agrobacterium vitis 379 genus 0 25 28924 Rhizobium 1 1673 398 species 0 1 1335 Rhizobium tropici 384 species 0 7223 1 Rhizobium leguminosarum species 396 0 1807 1 Rhizobium phaseoli Rhizobium gallicum 0 1640 1 species 56730 11642 19 0 no rank 2613769 Rhizobium sp. N324 species 1703969 1054 0 1 1 0 1134 species 2048897 Rhizobium sp. NXC24 Rhizobium sp. 10195 0 1 852 species 2028343 Rhizobium sp. Kim5 865 0 1 species 2020311 Rhizobium sp. CIAT894 species 2020312 809 0 1 Rhizobium sp. Y9 species 1914541 908 0 1 Rhizobium sp. IE4771 1301032 species 0 724 1 species 1703968 2 0 1 Rhizobium sp. N871 Rhizobium sp. N1341 0 2 1 species 1703962 Rhizobium sp. N741 species 1703967 1 0 1 Rhizobium sp. NXC14 1 0 943 species 1981173 Rhizobium sp. IRBG74 species 424182 888 0 1 Rhizobium sp. N731 1 0 163 1703966 species species 1869170 0 779 1 Rhizobium sp. S41 Rhizobium sp. N113 1 0 3 1703960 species Rhizobium sp. TAL182 2020313 species 0 1 200 0 1 808 species 1125847 Rhizobium sp. NT-26 Rhizobium sp. N1314 species 1703961 0 1 163 1344 0 1 1571470 species Rhizobium sp. ACO-34A 0 1 3604 29449 species Rhizobium etli 6 2 0 2082 genus 1525371 1 Neorhizobium Neorhizobium galegae 0 1 2076 species 399 family 2036754 3153 0 4 Chelatococcaceae 1 32 61 1 Chelatococcus 0 3 3121 28209 genus 1 1604 0 2638111 no rank 0 1604 1 1702325 species Chelatococcus sp. CO-6 1 0 1456 species 444444 Chelatococcus daeguensis 8 Bartonellaceae 1 772 family 18 0 6554 85 17 0 6546 genus 773 1 Bartonella 85701 species 0 318 1 Bartonella tribocorum 293 0 1 species 38323 Bartonella henselae Bartonella australis 0 336 1 388640 species 368 0 1 species 33045 Bartonella grahamii species 803 1 0 346 Bartonella quintana Bartonella ancashensis species 1318743 0 1 274 Bartonella clarridgeiae 1 0 376 56426 species Bartonella vinsonii 1 0 302 species 33047 0 1 231 species 774 Bartonella bacilliformis 1734 6 0 no rank 2645622 365 0 1 species 1933906 Bartonella sp. JB15 0 191 1 1933910 species Bartonella sp. A1379B 1933912 species 1 0 201 Bartonella sp. Raccoon60 515256 species 205 0 1 Bartonella sp. 1-1C Bartonella sp. JB63 0 1 365 species 1933907 Bartonella sp. WD16.2 1 0 407 1933904 species Bartonella apis 1 0 1883 species 1686310 0 20 15657 69277 family 1 Phyllobacteriaceae 67 419 1 Mesorhizobium 0 9 10960 68287 genus Mesorhizobium amorphae 1170 0 1 species 71433 381 species 0 1 1385 Mesorhizobium loti Mesorhizobium sp. B7 species 1670800 916 0 1 1291 0 1 536018 species Mesorhizobium australicum Mesorhizobium opportunistum 593909 species 0 1 1397 Mesorhizobium japonicum 2066070 species 0 1 1455 Mesorhizobium ciceri species 39645 0 1 1577 1 1350 0 no rank 325217 Mesorhizobium sp. WSM1497 species 278153 0 1 1350 10 0 883 2 genus 274591 1 Hoeflea no rank 2614931 873 1 0 0 873 1 species 1620421 Hoeflea sp. IMCC20628 6 1 Phyllobacterium 919 0 2 28100 genus Phyllobacterium zundukense 1867719 species 913 0 1 8 1 Chelativorans 0 672 2 genus 449972 664 1 0 2643807 no rank 0 664 1 species 266779 Chelativorans sp. BNC1 0 2 735 245876 genus 1 Nitratireductor 72 Nitratireductor basaltis 0 1 663 472175 species Aminobacter 1 31988 genus 2 0 1421 29 0 1392 1 83263 species Aminobacter aminovorans Brucellaceae 1 118882 family 7068 0 20 39 977 Brucella 1 234 genus 14 0 2866 Brucella microti species 444163 1 0 105 species 236 0 1 108 Brucella ovis Brucella vulpis 981386 species 0 1 292 Brucella abortus species 235 56 0 1 Brucella ceti species 120577 1 0 118 no rank 2632610 757 4 0 0 1 31 1891098 species Brucella sp. 2002734562 1 0 156 species 1149952 Brucella sp. 09RB8471 Brucella sp. 141012304 species 1885919 228 0 1 1844051 species 342 0 1 Brucella sp. 09RB8910 Brucella melitensis 0 125 1 29459 species 29461 species 0 117 1 Brucella suis 98 0 1 36855 species Brucella canis Brucella pinnipedialis 0 113 1 species 120576 528 genus 5 0 4163 Ochrobactrum 1 40 Ochrobactrum pseudogrignonense 0 1213 1 419475 species Ochrobactrum anthropi species 529 845 0 1 Ochrobactrum sp. A44 0 1 1025 species 271865 Ochrobactrum pituitosum 0 1040 1 species 571256 97 Methylobacteriaceae 1 family 119045 20554 0 15 2 0 1635 186650 genus 1 Microvirga 20 species 1882682 0 1615 1 Microvirga ossetica 3 7200 0 genus 2282523 1987 0 1 species 223967 Methylobacterium populi species 408 4338 0 1 Methylobacterium extorquens 1 0 875 29429 species Methylobacterium zatmanii 554 Methylobacterium 1 genus 407 11622 0 9 Methylobacterium phyllosphaerae 418223 species 0 1 1098 114616 species 1352 0 1 Methylobacterium nodulans 334852 species 1 0 1162 Methylobacterium oryzae Methylobacterium aquaticum 270351 species 1980 0 1 Methylobacterium radiotolerans 1484 0 1 species 31998 3 3992 0 no rank 2615210 Methylobacterium sp. AMS5 species 925818 1 0 1200 1 0 1640 426117 species Methylobacterium sp. 4-46 0 1 1152 species 1479019 Methylobacterium sp. C1 256 31662 0 26 family 41294 1 Bradyrhizobiaceae 6 Variibacter 1 1649510 genus 655 0 2 649 0 1 species 1333996 Variibacter gotjawalensis 0 2 7866 1073 genus 1 Rhodopseudomonas 141 Rhodopseudomonas palustris 1076 species 1 0 7725 0 2 691 genus 40136 1 Oligotropha 3 Oligotropha carboxidovorans 0 1 688 species 40137 5 0 5002 genus 85413 1 Bosea 79 1526658 species 0 1271 1 Bosea vaviloviae 2653178 no rank 0 3 3652 Bosea sp. AS-1 species 2015316 0 1 1335 Bosea sp. RAC05 1458 0 1 species 1842539 1 0 859 1792307 species Bosea sp. PAMC 26642 Nitrobacter 1 genus 911 1430 0 3 12 Nitrobacter hamburgensis 1 0 771 species 912 species 913 647 0 1 Nitrobacter winogradskyi 474 Bradyrhizobium 1 genus 374 15762 0 11 0 1964 1 375 species Bradyrhizobium japonicum no rank 2631580 6 8733 0 1318 0 1 species 115808 Bradyrhizobium sp. ORS 285 Bradyrhizobium sp. CCGE-LA001 0 1152 1 1223566 species species 114615 1234 0 1 Bradyrhizobium sp. ORS 278 Bradyrhizobium sp. BTAi1 0 1 2053 species 288000 2057741 species 1653 0 1 Bradyrhizobium sp. SK17 Bradyrhizobium sp. 1 0 1323 376 species Bradyrhizobium oligotrophicum 1 0 1478 species 44255 1060 0 1 species 1274631 Bradyrhizobium icense 1 0 2053 1355477 species Bradyrhizobium diazoefficiens 0 820 3 family 119043 1 Rhodobiaceae 3 1 Parvibaculum 2 0 817 genus 256616 32 Parvibaculum lavamentivorans 256618 species 0 1 785 family 335928 0 5179 7 Xanthobacteraceae 1 95 27 1 Xanthobacter 0 1677 2 genus 279 Xanthobacter autotrophicus 0 1650 1 species 280 21 1 Azorhizobium 2 0 2055 genus 6 Azorhizobium caulinodans 0 1 2034 7 species 44 genus 152053 0 2 1352 Starkeya 1 Starkeya novella 0 1 1308 921 species 94 1 Hyphomicrobiaceae 11627 0 19 family 45401 4 Filomicrobium 1 119044 genus 0 553 2 Candidatus Filomicrobium marinum 1608628 species 549 0 1 Hyphomicrobium 1 genus 81 2958 0 4 40 0 1221 1 species 53399 Hyphomicrobium denitrificans 1 788 0 no rank 2619925 0 1 788 species 717785 Hyphomicrobium sp. MC1 Hyphomicrobium nitrativorans 0 1 909 1427356 species Devosia 1 genus 46913 3455 0 4 146 0 3 3309 no rank 196773 Devosia sp. H5989 0 1256 1 1643450 species Devosia sp. A16 species 1736675 0 1 1196 Devosia sp. I507 0 857 1 2083786 species 118 1298 0 2 29407 genus 1 Rhodoplanes 0 1180 1 no rank 2619116 674703 species 1 0 1180 Rhodoplanes sp. Z2-YC6860 2 0 1675 59282 genus 1 Blastochloris 48 Blastochloris viridis 0 1627 1 1079 species 1 Rhodomicrobium 934 0 2 genus 1068 18 1069 species 0 916 1 Rhodomicrobium vannielii 12 genus 1082930 0 660 2 Pelagibacterium 1 1 0 648 species 531813 Pelagibacterium halotolerans 22 family 255475 0 5724 7 Aurantimonadaceae 1 1 Aureimonas 0 2 1241 genus 414371 10 no rank 2615206 1231 1 0 Aureimonas sp. AU20 species 1349819 0 1231 1 100 0 4461 4 293088 genus 1 Martelella 0 1584 1 293089 species Martelella mediterranea Martelella endophytica 1 0 1172 species 1486262 1 1605 0 2629616 no rank Martelella sp. AD-3 1605 0 1 686597 species Beijerinckiaceae 1 45404 family 0 5 1312 6 genus 532 0 2 386 Beijerinckia 1 1 0 385 1 533 species Beijerinckia indica 4 2 0 920 120652 genus 1 Methylocella 0 1 916 199596 species Methylocella silvestris 195 1 Caulobacterales 0 20 16371 204458 order 235 family 76892 0 16176 19 Caulobacteraceae 1 0 6 7866 genus 75 1 Caulobacter 176 1 0 2411 155892 species Caulobacter vibrioides 88688 species 0 1330 1 Caulobacter segnis 0 865 1 69395 species Caulobacter henricii Caulobacter mirabilis species 69666 0 1 1385 2648921 no rank 1699 1 0 1 0 1699 species 366602 Caulobacter sp. K31 1291 0 2 76890 genus 1 Asticcacaulis 68 species 78587 0 1 1223 Asticcacaulis excentricus 81440 no rank 436 0 1 Caulobacteraceae bacterium OTSz_A_272 0 1 436 1759059 species Phenylobacterium 1 20 genus 0 1309 2 13 species 284016 1296 0 1 Phenylobacterium zucineum 136 genus 41275 0 5039 7 Brevundimonas 1 species 74313 0 1 869 Brevundimonas subvibrioides 0 1 920 species 588932 Brevundimonas naejangsanensis 903 0 1 species 41276 Brevundimonas vesicularis no rank 2622653 3 2211 0 1 0 847 1938605 species Brevundimonas sp. LM2 Brevundimonas sp. DS20 1 0 683 1532555 species 0 1 681 1827469 species Brevundimonas sp. GW460-12-10-14-LB2 0 10144 54 766 order 1 Rickettsiales 20 28 1328881 family 316 0 2 Candidatus Midichloriaceae 1 1 0 288 genus 411566 Candidatus Midichloria mitochondrii 0 288 1 234827 species Rickettsiaceae 1 family 775 5364 0 28 5 25 5063 0 33988 tribe genus 780 0 23 4821 Rickettsia 1 885 2 0 925 114292 species group 0 1 503 785 species Rickettsia typhi Rickettsia prowazekii 1 0 422 species 782 species group 1129742 0 873 2 Rickettsia bellii species 33990 0 1 579 788 species 0 1 294 Rickettsia canadensis 17 1834 0 114277 species group 0 1 51 1105106 species Rickettsia philipii 0 31 1 species 35792 Rickettsia parkeri Rickettsia peacockii 0 1 105 species 47589 Rickettsia heilongjiangensis species 226665 18 0 1 160 0 1 786 species Rickettsia akari Rickettsia massiliae 35791 species 0 15 1 35790 species 0 1 16 Rickettsia japonica 1 0 25 species 35794 Rickettsia slovaca Rickettsia felis 42862 species 1 0 312 Rickettsia conorii species 781 22 0 1 species 109232 0 219 1 Rickettsia monacensis Rickettsia rhipicephali species 33992 121 0 1 Rickettsia africae 0 55 1 species 35788 species 783 87 0 1 Rickettsia rickettsii Rickettsia montanensis 17 0 1 33991 species Rickettsia amblyommatis 33989 species 0 1 187 0 1 393 species 787 Rickettsia australis 1 304 0 114295 no rank Rickettsia endosymbiont of Bemisia tabaci 0 304 1 species 337479 5 Orientia 1 69474 genus 2 0 242 Orientia tsutsugamushi 0 237 1 784 species Candidatus Phycorickettsia 1 genus 2115980 2 0 296 1 species 2115978 295 0 1 Candidatus Phycorickettsia trachydisci 3 942 family 22 0 4095 Anaplasmataceae 1 495 0 3 genus 768 species 770 130 0 1 Anaplasma marginale 106179 species group 0 1 199 Anaplasma phagocytophilum 948 species 0 1 199 769 species 1 0 166 Anaplasma centrale 1683 0 6 genus 943 1 Ehrlichia 55 106178 species group 4 1323 0 Ehrlichia ruminantium 575 0 1 779 species 1 0 273 944 species Ehrlichia canis 945 species 1 0 171 Ehrlichia chaffeensis species 35795 0 1 304 Ehrlichia muris 305 1 0 106181 no rank 391036 species 0 1 305 Ehrlichia sp. HF 5 genus 33993 0 4 278 Neorickettsia 1 species 33994 0 1 113 Neorickettsia helminthoeca Neorickettsia sennetsu 1 0 95 species 951 1 0 65 species 950 Neorickettsia risticii 1636 8 0 tribe 952 1 Wolbachia 8 0 1636 genus 953 41 2640676 no rank 7 1595 0 66084 species 0 244 1 Wolbachia sp. wRi species 163164 159 0 1 Wolbachia endosymbiont of Drosophila melanogaster Wolbachia endosymbiont of Cimex lectularius species 246273 1 0 250 1 0 154 species 77551 Wolbachia endosymbiont of Onchocerca volvulus Wolbachia endosymbiont of Onchocerca ochengi 155 0 1 species 100901 77038 species 431 0 1 Wolbachia endosymbiont of Drosophila simulans 80849 species 1 0 202 Wolbachia endosymbiont of Brugia malayi 1699067 no rank 349 1 0 349 0 1 1528098 species Rickettsiales bacterium Ac37b 2 1216 0 order 2800059 2 1216 0 2800061 family 50 Maricaulis 1 genus 74317 1216 0 2 74318 species 0 1166 1 Maricaulis maris Rhodospirillales 1 order 204441 0 61046 66 736 1 Rhodospirillaceae 36340 0 30 family 41295 543 10 Nitrospirillum 1 genus 1543705 0 2 2949 28077 species 0 2939 1 Nitrospirillum amazonense 0 1 599 genus 1263978 0 1 599 1263979 species Candidatus Endolissoclinum faulkneri 25 0 3 2164 168934 genus 1 Thalassospira 0 1215 1 species 2048283 Thalassospira sp. CSC3H3 0 1 924 220697 species Thalassospira xiamenensis 17 1 Tistrella 2 0 1926 171436 genus species 171437 0 1 1909 Tistrella mobilis 258 1 Azospirillum 0 5 12674 191 genus Azospirillum lipoferum species 193 1 0 4164 1347 0 1 1226968 species Azospirillum humicireducens Azospirillum brasilense 192 species 0 4384 1 Azospirillum thiophilum species 528244 2521 0 1 1 Pararhodospirillum 2 0 736 genus 1612157 17 Pararhodospirillum photometricum species 1084 0 1 719 2 0 408 2 1804663 genus 1 Haematospirillum Haematospirillum jordaniae species 1549855 0 406 1 0 690 2 1182780 genus 1 Magnetospira 14 no rank 2685734 1 0 676 Magnetospira sp. QH-2 1 0 676 species 1288970 19 Niveispirillum 1 1543704 genus 2 0 1728 species 1612173 0 1709 1 Niveispirillum cyanobacteriorum 1081 genus 0 2974 3 Rhodospirillum 1 33 1863 0 1 34018 species Rhodospirillum centenum Rhodospirillum rubrum 1085 species 1078 0 1 178 8949 0 5 genus 13134 1 Magnetospirillum 0 3833 2 no rank 2617991 Magnetospirillum sp. XM-1 0 1970 1 species 1663591 Magnetospirillum sp. ME-1 0 1863 1 1639348 species Magnetospirillum magneticum 1 0 2425 species 84159 Magnetospirillum gryphiswaldense species 55518 2513 0 1 397 Acetobacteraceae 1 433 family 0 23970 35 1 Acidiphilium 3 0 1927 522 genus 86 Acidiphilium cryptum 0 1 893 524 species 62140 species 0 948 1 Acidiphilium multivorum 104 1434011 genus 0 3465 5 Komagataeibacter 1 Komagataeibacter europaeus 1 0 631 species 33995 265960 species 725 0 1 Komagataeibacter nataicola Komagataeibacter medellinensis 557 0 1 1177712 species Komagataeibacter xylinus 0 1448 1 species 28448 1 Acetobacter 6687 0 8 434 genus 83 species 1076596 1 0 786 Acetobacter persici species 446692 0 635 1 Acetobacter senegalensis Acetobacter oryzifermentans 1633874 species 0 1 619 Acetobacter tropicalis 1 0 769 104102 species 0 1 757 subgenus 151157 species 435 0 1 757 Acetobacter aceti 0 1 2391 438 species Acetobacter pasteurianus species 65959 647 0 1 Acetobacter pomorum 153497 genus 0 2 1262 Kozakia 1 2 1 0 1260 species 153496 Kozakia baliensis 2 Asaia 1 91914 genus 2 0 573 Asaia bogorensis 91915 species 0 571 1 3 0 3619 125216 genus 1 Roseomonas 68 0 1943 1 no rank 2617492 Roseomonas sp. FDAARGOS_362 2018065 species 0 1 1943 Roseomonas gilardii species 257708 0 1608 1 3 Parasaccharibacter 1 genus 1602345 0 2 542 Parasaccharibacter apium 1510841 species 0 539 1 320496 genus 0 2 801 Neoasaia 1 19 Neoasaia chiangmaiensis 320497 species 1 0 782 23 Granulibacter 1 genus 364409 2 0 1501 species 364410 0 1478 1 Granulibacter bethesdensis 46 1949 0 3 441 genus 1 Gluconobacter Gluconobacter albidus species 318683 0 529 1 0 1 1374 species 442 Gluconobacter oxydans 28 Gluconacetobacter 1 genus 89583 0 2 1247 33996 species 1 0 1219 Gluconacetobacter diazotrophicus 1 Holosporales 1 1921002 order 0 7 1024 303 0 3 family 2100208 1 Caedimonadaceae 6 2 1 Candidatus Nucleicultrix 0 2 297 genus 1509243 Candidatus Nucleicultrix amoebiphila 1509244 species 0 1 295 356 0 1 family 44746 204454 no rank 1 356 0 1 0 356 86106 species endosymbiont of Acanthamoeba sp. UWC8 1 1777752 family 364 0 2 Candidatus Paracaedibacteraceae 1 0 1 363 1521255 genus 0 1 363 species 91604 Candidatus Paracaedibacter acanthamoebae 7 Magnetococcales 1 order 1191478 3 0 727 720 0 2 family 1191479 2 0 720 162171 genus 1 Magnetococcus 9 Magnetococcus marinus 0 1 711 species 1124597 384 1 Rhodobacterales 0 91 72870 order 204455 family 31989 72486 0 90 Rhodobacteraceae 1 1466 188905 genus 2 0 960 Jannaschia 1 1 2645469 no rank 0 959 1 1 0 959 290400 species Jannaschia sp. CCS1 255 1 Paracoccus 9 0 11279 genus 265 Paracoccus denitrificans species 266 1821 0 1 Paracoccus zhejiangensis 1077935 species 1 0 1307 Paracoccus sp. CBA4604 2065379 species 0 1383 1 Paracoccus aminophilus species 34003 0 1042 1 0 2028 1 147645 species Paracoccus yeei 1945662 species 0 1 1177 Paracoccus contaminans 1377 0 1 species 34004 Paracoccus aminovorans no rank 246570 889 1 0 Paracoccus sp. BM15 0 889 1 species 1529068 5 genus 2433 0 1521 3 Roseobacter 1 Roseobacter denitrificans 1 0 784 2434 species Roseobacter litoralis 1 0 732 42443 species 1 Confluentimicrobium 2 0 1347 1609958 genus 10 no rank 2643318 1 0 1337 Confluentimicrobium sp. EMB200-NS6 1609966 species 0 1 1337 1 Celeribacter 0 3893 5 875170 genus 14 Celeribacter ethanolicus 1758178 species 1 0 1060 0 1235 1 1208324 species Celeribacter indicus 631 0 1 1397108 species Celeribacter marinus 1 0 953 1411902 species Celeribacter manganoxidans Sulfitobacter 1 60136 genus 0 2012 3 2 Sulfitobacter pseudonitzschiae 1402135 species 0 1085 1 0 925 1 196795 no rank Sulfitobacter sp. AM1-D1 0 925 1 species 1917485 Phaeobacter 1 genus 302485 0 7509 5 137 Phaeobacter inhibens 221822 species 1 0 2833 Phaeobacter piscinae species 1580596 0 1 1981 Phaeobacter porticola 0 1 515 species 1844006 Phaeobacter gallaeciensis 1 0 2043 species 60890 16 2 0 1352 genus 360528 1 Pelagibaca 1250539 species 1336 0 1 Pelagibaca abyssi 677 0 1 genus 74030 Roseovarius mucosus 677 0 1 215743 species 1032 1 0 genus 1649279 species 379347 0 1 1032 Ruegeria mobilis 42 4321 0 4 genus 34008 1 Rhodovulum Rhodovulum sulfidophilum 0 1 2148 35806 species no rank 2631432 2 2131 0 0 1 1095 1564506 species Rhodovulum sp. P5 species 308754 1 0 1036 Rhodovulum sp. MB263 44 1 Pannonibacter 2 0 2337 genus 227873 0 2293 1 species 121719 Pannonibacter phragmitetus no rank 58840 2 1699 0 Rhodobacteraceae bacterium QY30 2033435 species 1 0 874 Rhodobacteraceae bacterium species 1904441 0 825 1 7 genus 58842 1712 0 2 Sagittula 1 0 1 1705 2624628 no rank Sagittula sp. P11 1705 0 1 2009329 species 70 Rhodobacter 1 genus 1060 5 0 6566 2 0 1784 no rank 196779 Rhodobacter sp. CZR27 0 1 1055 2033869 species 0 1 729 1850250 species Rhodobacter sp. LPB0142 Rhodobacter sphaeroides 3491 0 1 species 1063 1061 species 1 0 1221 Rhodobacter capsulatus 6 Ketogulonicigenium 1 92944 genus 0 3 1389 Ketogulonicigenium robustum species 92947 0 1 690 693 0 1 92945 species Ketogulonicigenium vulgare 2 2 0 1040 74032 genus 1 Antarctobacter 0 1038 1 74033 species Antarctobacter heliothermus 0 2 543 1284657 genus 1 Planktomarina 6 Planktomarina temperata 1 0 537 1284658 species 5 genus 285107 779 0 2 Thioclava 1 1 0 774 1915078 species Thioclava nitratireducens 1 850 0 genus 1759396 2622455 no rank 850 1 0 1 0 850 species 1920883 Marivivens sp. JLT3646 Loktanella 21 0 1 245186 genus 0 2 1 genus 436357 Thalassococcus genus 159345 0 2 869 Roseibacterium 1 2 Roseibacterium elongatum species 159346 0 1 867 263377 genus 2 3265 0 2640570 no rank 1504 1 0 0 1504 1 species 1792508 Yangia sp. CCB-MM3 Thiobacimonas profunda 1761 0 1 species 1229727 2211641 genus 0 930 1 0 930 1 245188 species Loktanella vestfoldensis 119541 genus 639 1 0 Rhodobaca barguzinensis 0 639 1 species 441209 9 2297 0 3 97050 genus 1 Ruegeria 1077 1 0 2625375 no rank Ruegeria sp. TM1040 0 1077 1 species 292414 species 89184 1 0 1211 Ruegeria pomeroyi 2 1 Halocynthiibacter 377 0 2 genus 1579315 1579316 species 0 1 375 Halocynthiibacter arcticus 1 0 1184 2 genus 367771 1 Marinovum 1 0 1183 42444 species Marinovum algicola 1 Octadecabacter 0 4 1160 genus 53945 7 1 0 324 species 1458307 Octadecabacter temperatus 0 338 1 species 53946 Octadecabacter arcticus 0 1 491 species 1217908 Octadecabacter antarcticus 5 1 Leisingera 1150 0 2 genus 191028 species 133924 1145 0 1 Leisingera methylohalidivorans 5 Tateyamaria 1 genus 299261 736 0 2 species 299262 1 0 731 Tateyamaria omphalii 0 891 2 genus 309512 1 Dinoroseobacter 4 Dinoroseobacter shibae 215813 species 0 887 1 1240 0 2 genus 1097466 1 Defluviimonas 2 Defluviimonas alba 1335048 species 1 0 1238 41 1 Labrenzia 3441 0 4 478070 genus Labrenzia aggregata species 187304 0 1176 1 0 2224 2 no rank 2648686 Labrenzia sp. VG12 species 2021862 0 1 1040 Labrenzia sp. CP4 1184 0 1 1674922 species 0 4429 8 82117 no rank 692 2 0 62654 clade 1 Candidatus Puniceispirillum 692 0 2 genus 767891 3 Candidatus Puniceispirillum marinum 689 0 1 767892 species 1 Phreatobacter 0 2 1709 genus 1632780 26 species 1868589 0 1 1683 Phreatobacter sp. S-12 27 1 Polymorphum 0 1066 2 991903 genus species 991904 1 0 1039 Polymorphum gilvum 2 Micavibrio 1 genus 213485 0 2 962 0 1 960 species 349221 Micavibrio aeruginosavorus Zetaproteobacteria 1 class 580370 0 2065 6 26 15 0 5 2039 580371 order 1 Mariprofundales 1 Mariprofundaceae 2024 0 4 family 580372 11 5 0 2013 3 genus 377315 1 Mariprofundus 854 0 1 species 1921087 Mariprofundus ferrinatatus species 1921086 0 1154 1 Mariprofundus aestuarium 1 Betaproteobacteria 378303 0 350 28216 class 767 no rank 119066 2836 0 12 Candidatus Tremblaya 2 0 1 genus 189384 8 0 89 2 genus 1381133 1 Candidatus Profftella Candidatus Profftella armatura 81 0 1 669502 species genus 33055 1444 0 6 Kinetoplastibacterium 1 12 Candidatus Kinetoplastibacterium galatii 299 0 1 994695 species 0 316 1 994692 species Candidatus Kinetoplastibacterium desouzaii 0 1 429 33056 species Candidatus Kinetoplastibacterium crithidii Candidatus Kinetoplastibacterium oncopeltii 994696 species 274 0 1 0 114 1 species 233181 Kinetoplastibacterium blastocrithidii 17 327159 genus 1293 0 2 Candidatus Accumulibacter 1 0 1 1276 species 327160 Candidatus Accumulibacter phosphatis 1301080 genus 1 8 0 Candidatus Nasuia deltocephalinicola 0 1 8 1160784 species Burkholderiales 1 order 80840 0 300798 233 2951 1 Alcaligenaceae 42 0 55104 family 506 459 1 697 0 90243 genus species 90245 0 1 697 Oligella urethralis 650 6 0 18555 genus 222 1 Achromobacter no rank 2626865 1 1720 0 1 0 1720 1758194 species Achromobacter sp. AONIH1 217204 species 1 0 1565 Achromobacter insolitus Achromobacter denitrificans 0 4187 1 32002 species Achromobacter xylosoxidans 7089 0 1 species 85698 0 1 3344 217203 species Achromobacter spanius 879 Bordetella 1 genus 517 0 24629 17 species 519 0 1267 1 Bordetella parapertussis 0 1532 1 species 463040 Bordetella genomosp. 13 species 103855 1778 0 1 Bordetella hinzii species 463025 1918 0 1 Bordetella bronchialis 2677 0 1 518 species Bordetella bronchiseptica species 520 0 1 1123 Bordetella pertussis Bordetella trematum 123899 species 0 1 1336 1532 0 1 species 463024 Bordetella genomosp. 6 Bordetella petrii 94624 species 0 1548 1 1331258 species 0 1750 1 Bordetella pseudohinzii Bordetella genomosp. 8 0 1 1279 species 1416806 species 35814 824 0 1 Bordetella holmesii 1 0 1276 2630031 no rank Bordetella sp. H567 species 1697043 1 0 1276 1324 0 1 species 1416803 Bordetella genomosp. 9 1504 0 1 species 463014 Bordetella flabilis Bordetella avium 1082 0 1 521 species 2 genus 29574 808 0 3 Taylorella 1 84590 species 0 463 1 Taylorella asinigenitalis 29575 species 343 0 1 Taylorella equigenitalis 2182 0 2 507 genus 1 Alcaligenes 14 species 511 0 2168 1 Alcaligenes faecalis 82 359336 genus 2 0 2227 Castellaniella 1 0 1 2145 species 75697 Castellaniella defragrans 2 0 1789 1921582 genus 1 Orrella 27 Orrella dioscoreae 1762 0 1 1851544 species 305976 genus 1 908 0 no rank 2640016 908 1 0 Pusillimonas sp. T7-7 1007105 species 0 1 908 1 Advenella 0 1749 3 290425 genus 13 302406 species 798 0 1 Advenella mimigardefordensis 310575 species 938 0 1 Advenella kashmirensis 3 2 0 683 1472344 genus 1 Basilea 680 0 1 species 1472345 Basilea psittacipulmonis 2 418 0 2 1100891 genus 1 Paenalcaligenes 416 0 1 species 643674 Paenalcaligenes hominis 1 Burkholderiaceae 109900 0 84 119060 family 796 1 Ralstonia 5 0 12032 48736 genus 311 Ralstonia mannitolilytica 1771 0 1 105219 species 329 species 1 0 3351 Ralstonia pickettii Ralstonia solanacearum 4871 0 1 305 species Ralstonia insidiosa species 190721 1728 0 1 Polynucleobacter 1 genus 44013 0 1212 4 1 Polynucleobacter necessarius species 576610 221 0 1 Polynucleobacter duraquae 1835254 species 0 452 1 Polynucleobacter asymbioticus 1 0 538 species 576611 2901 0 41 54270 genus 32008 1 Burkholderia 11 10280 0 2613784 no rank species 1795043 0 1223 1 Burkholderia sp. PAMC 26561 1 0 730 1740162 species Burkholderia sp. Bp5365 640512 species 1 0 1250 Burkholderia sp. CCGE1003 Burkholderia sp. Bp7605 1740163 species 713 0 1 Burkholderia sp. RPE67 1 0 994 species 758796 1678678 species 0 1068 1 Burkholderia sp. HB1 737 0 1 species 640510 Burkholderia sp. CCGE1001 species 1795874 0 786 1 Burkholderia sp. PAMC 28687 Burkholderia sp. YI23 1097668 species 0 1 1206 Burkholderia sp. KJ006 836 0 1 species 416344 1 0 737 1468409 species Burkholderia sp. 2002721687 Burkholderia glumae 337 species 0 2486 1 species group 87882 26381 0 19 Burkholderia pseudomultivorans 1 0 985 species 1207504 Burkholderia vietnamiensis 0 1 1572 species 60552 species 1503055 682 0 1 Burkholderia territorii Burkholderia seminalis 488731 species 0 617 1 0 829 1 species 488446 Burkholderia latens [Pseudomonas] mesoacidophila species 265293 1 0 966 152500 species 1 0 796 Burkholderia dolosa Burkholderia stagnalis 841 0 1 1503054 species Burkholderia multivorans 87883 species 1 0 1484 0 1 2196 species 101571 Burkholderia ubonensis Burkholderia cenocepacia 1 0 4212 95486 species 95485 species 0 1 1524 Burkholderia stabilis 488732 species 0 862 1 Burkholderia diffusa Burkholderia metallica 616 0 1 species 488729 488447 species 1 0 727 Burkholderia contaminans 292 species 1 0 4290 Burkholderia cepacia 0 1 1395 482957 species Burkholderia lata species 60550 549 0 1 Burkholderia pyrrocinia Burkholderia ambifaria species 152480 0 1238 1 0 7 8232 species group 111527 Burkholderia oklahomensis 998 0 1 species 342113 Burkholderia sp. MSMB617WGS species 1637831 0 658 1 0 2120 1 species 28450 Burkholderia pseudomallei 2054 0 1 species 57975 Burkholderia thailandensis Burkholderia mallei 809 0 1 species 13373 Burkholderia sp. MSMB0266 species 1637837 800 0 1 1637841 species 793 0 1 Burkholderia sp. MSMB0852 Burkholderia gladioli 28095 species 1 0 2428 0 1 1562 41899 species Burkholderia plantarii genus 2571159 0 1 522 Paraburkholderia rhizoxinica 0 522 1 412963 species 9250 0 10 genus 93217 1 Pandoraea 212 93222 species 0 1 1015 Pandoraea sputorum Pandoraea pnomenusa 93220 species 0 1 1002 0 1061 1 656178 species Pandoraea vervacti Pandoraea apista 0 1 944 species 93218 species 656179 1054 0 1 Pandoraea faecigallinarum Pandoraea norimbergensis 971 0 1 species 93219 Pandoraea thiooxydans species 445709 1 0 861 573737 species 1275 0 1 Pandoraea oxalativorans Pandoraea pulmonicola 0 1 855 93221 species 1 Cupriavidus 0 9 15943 106589 genus 585 species 106590 0 2518 1 Cupriavidus necator 4575 0 2 no rank 2640874 1389192 species 0 1 2126 Cupriavidus sp. USMAHM13 0 1 2449 876364 species Cupriavidus sp. USMAA2-4 Cupriavidus gilardii species 82541 0 1 1290 2266 0 1 367825 species Cupriavidus sp. USMAA1020 1 0 1454 119219 species Cupriavidus metallidurans Cupriavidus pinatubonensis 1423 0 1 species 248026 Cupriavidus basilensis 1832 0 1 species 68895 0 1 1053 genus 1827195 Burkholderia sp. RPE64 0 1053 1 758793 species 435 Paraburkholderia 1 genus 1822464 12 0 14822 species 261302 0 1 906 Paraburkholderia phytofirmans Paraburkholderia phenoliruptrix 897 0 1 252970 species species 2026199 1253 0 1 Paraburkholderia aromaticivorans no rank 2615204 1218 1 0 Paraburkholderia sp. SOS3 0 1218 1 1926494 species Paraburkholderia sprentiae 948107 species 1 0 1277 0 1 1643 species 148447 Paraburkholderia phymatum Paraburkholderia caribensis 0 1760 1 75105 species Paraburkholderia fungorum 1097 0 1 species 134537 Paraburkholderia xenovorans 36873 species 0 1066 1 0 1550 1 311230 species Paraburkholderia terrae 1 0 1720 169430 species Paraburkholderia hospita 971 65374 0 58 80864 family 1 Comamonadaceae Ramlibacter 1 174951 genus 0 2913 2 18 2895 0 1 species 94132 Ramlibacter tataouinensis genus 1436289 0 495 1 0 1 495 1436290 species Candidatus Symbiobacter mobilis 73 2 0 1217 1649468 genus 1 Melaminivora 2641902 no rank 1 1144 0 Melaminivora sp. SC2-9 2109913 species 1 0 1144 1 Rhodoferax 5 0 4352 genus 28065 126 Rhodoferax koreense 1401 0 1 species 1842727 Rhodoferax antarcticus 81479 species 773 0 1 Rhodoferax ferrireducens 0 1 968 species 192843 0 1 1084 species 1484693 Rhodoferax saidenbachensis 39 0 1248 2 352450 genus 1 Simplicispira 1209 0 1 species 2109915 Simplicispira sp. SC1-8 179 1 Variovorax 8936 0 5 34072 genus 663243 no rank 0 2 3125 Variovorax sp. PMC12 species 2126319 1 0 2240 Variovorax sp. PAMC 28711 species 1795631 0 1 885 34073 species 1 0 4007 Variovorax paradoxus Variovorax boronicumulans 0 1625 1 species 436515 498 genus 12916 9 0 11860 Acidovorax 1 Acidovorax sp. NA3 553814 species 1 0 1240 2684926 no rank 4 5642 0 0 1 1260 species 1858609 Acidovorax sp. T1 232721 species 0 1363 1 Acidovorax sp. JS42 species 358220 1657 0 1 Acidovorax sp. KKS102 1842533 species 0 1 1362 Acidovorax sp. RAC01 Acidovorax avenae 0 1 1715 80867 species Acidovorax citrulli 0 1 1443 80869 species Acidovorax ebreus 1322 0 1 species 721785 genus 219181 0 3 3101 Ottowia 1 18 no rank 2645081 1533 0 1 0 1533 1 species 1658672 Ottowia sp. oral taxon 894 Ottowia sp. KADR8-3 species 2109914 1 0 1550 44 Hydrogenophaga 1 47420 genus 0 4 4695 0 3530 2 2610897 no rank Hydrogenophaga sp. PBC species 795665 2024 0 1 0 1506 1 1842537 species Hydrogenophaga sp. RAC07 1121 0 1 species 1763535 Hydrogenophaga crassostreae 11 Alicycliphilus 1 201096 genus 2 0 1510 species 179636 0 1499 1 Alicycliphilus denitrificans 285 Delftia 1 80865 genus 7813 0 5 no rank 2613839 3656 2 0 Delftia sp. HK171 1920191 species 0 1 1965 0 1 1691 742013 species Delftia sp. Cs1-4 0 1 1846 180282 species Delftia tsuruhatensis 0 1 2026 species 80866 Delftia acidovorans 1 Limnohabitans 0 1250 3 665874 genus 10 2626134 no rank 1240 2 0 species 1678128 1 0 805 Limnohabitans sp. 63ED37-2 435 0 1 species 1678129 Limnohabitans sp. 103DPR2 2 0 1197 genus 364316 1 Verminephrobacter 32 Verminephrobacter eiseniae 364317 species 0 1 1165 52 283 genus 0 4 6402 Comamonas 1 Comamonas testosteroni 1 0 3046 285 species 1 0 1721 1082851 species Comamonas serinivorans 0 1 1583 225992 species Comamonas kerstersii genus 2678886 1791 1 0 Melaminivora sp. SC2-7 0 1791 1 species 2116657 2490452 genus 0 1661 2 Comamonadaceae bacterium B1 0 1 936 species 1458426 Comamonadaceae bacterium A1 0 725 1 species 1458425 2609 0 3 52972 genus 1 Polaromonas 26 216465 species 1353 0 1 Polaromonas naphthalenivorans 2638319 no rank 1 1230 0 Polaromonas sp. JS666 0 1 1230 species 296591 1 Diaphorobacter 2 0 1353 238749 genus 6 Diaphorobacter polyhydroxybutyrativorans species 1546149 0 1347 1 0 2 14867 no rank 80841 1834205 species 1 0 13969 Burkholderiales bacterium YL45 Burkholderiales bacterium GJ-E10 0 898 1 species 1469502 17 17136 0 224471 no rank 1 Rubrivivax 0 3073 2 28067 genus 66 Rubrivivax gelatinosus 28068 species 0 1 3007 24 Leptothrix 1 88 genus 2 0 1495 species 34029 0 1 1471 Leptothrix cholodnii 102 Rhizobacter 1 212743 genus 1837 0 2 Rhizobacter gummiphilus 0 1 1735 species 946333 [Polyangium] brachysporum 1 0 1703 species 413882 58 0 2 1689 316612 genus 1 Methylibium 1 0 1631 species 105560 Methylibium petroleiphilum 60 Mitsuaria 1 65047 genus 2 0 2006 2648776 no rank 0 1 1946 1 0 1946 1658665 species Mitsuaria sp. 7 genus 318147 0 2 1404 Paucibacter 1 55 1 1349 0 no rank 2642959 Paucibacter sp. KCTC 42545 1768242 species 1349 0 1 genus 32012 1978 0 2 Thiomonas 1 49 Thiomonas intermedia species 926 0 1929 1 1 Roseateles 1951 0 2 93681 genus 35 species 76731 1 0 1916 Roseateles depolymerans 75682 family 0 29 35466 Oxalobacteraceae 1 282 202 genus 149698 9116 0 6 Massilia 1 0 3642 2 no rank 2609279 Massilia sp. NR 4-1 0 2131 1 species 1678028 Massilia sp. WG5 1511 0 1 1707785 species species 2045208 1517 0 1 Massilia sp. B2 Massilia putida 1141883 species 1 0 1645 Massilia sp. ZMN-3 2072590 species 2110 0 1 Herminiimonas 1 303379 genus 1172 0 3 7 species 204773 1 0 562 Herminiimonas arsenicoxydans 1809410 species 0 603 1 Herminiimonas arsenitoxidans 1 Janthinobacterium 7667 0 7 29580 genus 96 Janthinobacterium agaricidamnosum 1 0 1266 55508 species 2610881 no rank 4 4650 0 Janthinobacterium sp. LM6 1373 0 1 1938606 species species 375286 0 783 1 Janthinobacterium sp. Marseille 1 0 902 1236179 species Janthinobacterium sp. B9-8 Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 species 0 1592 1 0 1655 1 species 368607 Janthinobacterium svalbardensis 88 genus 202907 0 5931 4 Collimonas 1 279058 species 1 0 1853 Collimonas arenae 158899 species 0 1853 1 Collimonas fungivorans 1 0 2137 279113 species Collimonas pratensis 1 Oxalobacter 2 0 2903 846 genus 5 0 2898 1 847 species Oxalobacter formigenes 249 1 Herbaspirillum 8395 0 6 963 genus Herbaspirillum frisingense 1 0 2157 species 92645 1 1164 0 no rank 2624150 Herbaspirillum sp. meg3 2025949 species 1164 0 1 Herbaspirillum rubrisubalbicans 0 1 1427 species 80842 0 1432 1 341045 species Herbaspirillum hiltneri Herbaspirillum seropedicae 964 species 0 1 1966 1 Rhodocyclales 0 22 20657 206389 order 406 Zoogloeaceae 1 2008794 family 12 0 14127 437 183 7781 0 6 genus 33057 1 Thauera Thauera aromatica 59405 species 1 0 1191 no rank 2609274 2 0 3912 1 0 2138 85643 species Thauera sp. MZ1T 1774 0 1 2005884 species Thauera sp. K11 1103 0 1 species 96773 Thauera chlorobenzoica Thauera humireducens 1392 0 1 1134435 species 211 1 Azoarcus 5909 0 5 12960 genus species 418699 1 0 1378 Azoarcus olearius no rank 2629479 2 3279 0 Azoarcus sp. KH32C 748247 species 1699 0 1 0 1580 1 species 198107 Azoarcus sp. CIB Azoarcus sp. SY39 2067960 species 0 1 1041 Rhodocyclaceae 1 family 75787 6 0 4853 78 0 2 1220 551759 genus 1 Aromatoleum 34 1 0 1186 551760 species Aromatoleum aromaticum 68 Azospira 1 146937 genus 2 0 2304 Azospira oryzae 0 1 2236 146939 species 75788 no rank 1 1251 0 0 1251 1 species 1898103 Rhodocyclaceae bacterium 0 3 1271 family 2008795 1 Azonexaceae 19 19 2 0 1252 genus 73029 1 Dechloromonas 1 0 1233 species 259537 Dechloromonas aromatica 33809 no rank 1760 0 2 1277 0 1 species 1904640 Betaproteobacteria bacterium GR16-43 beta proteobacterium CB 0 1 483 species 543913 113 Nitrosomonadales 1 32003 order 0 16887 44 family 2008790 0 3 885 Thiobacillaceae 1 11 10 Thiobacillus 1 genus 919 0 2 874 36861 species 864 0 1 Thiobacillus denitrificans 1 Gallionellaceae 0 1852 5 family 90627 21 19 genus 314343 1105 0 2 Sideroxydans 1 Sideroxydans lithotrophicus species 63745 0 1 1086 Gallionella 1 96 genus 0 2 726 22 Gallionella capsiferriformans 0 1 704 species 370405 2772226 family 0 4 1587 0 2 742 935200 genus 1 Sulfuricella 17 Sulfuricella denitrificans 649841 species 0 725 1 4 Sulfuriferula 1 1778653 genus 845 0 2 0 1 841 2637784 no rank Sulfuriferula sp. AH1 species 1985873 0 1 841 Nitrosomonadaceae 1 family 206379 0 5732 12 36 44 1 Nitrosospira 4 0 1733 35798 genus Nitrosospira briensis 35799 species 0 565 1 1288494 species 0 1 463 Nitrosospira lacus 0 661 1 1231 species Nitrosospira multiformis 54 1 Nitrosomonas 7 0 3963 genus 914 1 0 639 916 species Nitrosomonas eutropha Nitrosomonas communis 44574 species 0 1 809 species 915 772 0 1 Nitrosomonas europaea no rank 2609265 0 1236 2 Nitrosomonas sp. AL212 153948 species 429 0 1 Nitrosomonas sp. Is79A3 0 807 1 261292 species Nitrosomonas ureae 44577 species 1 0 453 104 family 2008793 2944 0 5 Sterolibacteriaceae 1 35 genus 378210 2 0 1236 Methyloversatilis 1 1201 1 0 2639971 no rank Methyloversatilis sp. RAC08 species 1842540 1201 0 1 30 Sulfuritalea 1 1054211 genus 0 2 1604 Sulfuritalea hydrogenivorans 0 1574 1 748811 species 0 14 3774 32011 family 1 Methylophilaceae 20 5 0 470 2 16 genus 1 Methylophilus 2630143 no rank 465 1 0 1662285 species 0 465 1 Methylophilus sp. TWE2 658 0 3 genus 1679002 1 Candidatus Methylopumilus 1 Candidatus Methylopumilus turicensis species 1581680 346 0 1 Candidatus Methylopumilus planktonicus 1581557 species 0 1 311 22 genus 81682 0 3 1122 Methylovorus 1 266009 species 0 1 578 Methylovorus glucosotrophus 1 522 0 no rank 2634027 Methylovorus sp. MP688 species 887061 522 0 1 929 0 3 359407 genus 1 Methylotenera 38 0 1 512 1055487 species Methylotenera versatilis 359408 species 0 379 1 Methylotenera mobilis 404 genus 2 0 575 Methylobacillus 1 2 405 species 1 0 573 Methylobacillus flagellatus 334 0 36 34598 order 206351 1 Neisseriales family 1499392 13 0 14031 Chromobacteriaceae 1 199 1816 0 2 genus 168470 1 Laribacter 57 Laribacter hongkongensis 0 1 1759 168471 species 3 187 genus 0 1753 2 Aquaspirillum 1 1750 1 0 no rank 2620219 Aquaspirillum sp. LM1 1 0 1750 1938604 species 885864 genus 1270 0 2 Jeongeupia 1 16 1254 1 0 no rank 2619593 Jeongeupia sp. USM3 1 0 1254 species 1906741 41 2 0 2273 genus 568394 1 Pseudogulbenkiania no rank 2642558 1 2232 0 Pseudogulbenkiania sp. NH8B 0 2232 1 species 748280 no rank 90153 6720 4 0 137 6720 0 4 genus 535 1 Chromobacterium 536 species 1886 0 1 Chromobacterium violaceum 0 1 2129 no rank 2641838 Chromobacterium sp. ATCC 53434 species 2059672 1 0 2129 Chromobacterium vaccinii 2568 0 1 species 1108595 326 1 Neisseriaceae 0 20233 22 481 family 1 0 636 421605 no rank Neisseriaceae bacterium DSM 100970 1 0 636 2052837 species Snodgrassella 1 1193515 genus 0 2 665 2 663 0 1 species 1196083 Snodgrassella alvi 71 genus 1 509 0 Simonsiella muelleri 0 1 509 72 species 10 0 2 1468 genus 538 1 Eikenella Eikenella corrodens 539 species 0 1 1458 244 genus 482 14758 0 12 Neisseria 1 0 1 1084 326523 species Neisseria zoodegmatis 2 0 2298 no rank 2623750 Neisseria sp. KEM232 1 0 1400 655307 species Neisseria sp. 10022 species 1853276 0 898 1 Neisseria meningitidis species 487 0 1 3043 Neisseria mucosa 1164 0 1 488 species Neisseria lactamica 486 species 1751 0 1 Neisseria elongata species 495 829 0 1 Neisseria gonorrhoeae 1319 0 1 485 species 1853278 species 799 0 1 Neisseria sp. 10023 species 28091 0 1 1095 Neisseria weaveri Neisseria sicca 490 species 1 0 1132 1871 0 3 59 genus 1 Vitreoscilla 16 no rank 2627922 596 1 0 0 596 1 species 96942 Vitreoscilla sp. C1 Vitreoscilla filiformis 1 0 1259 63 species 1 1 Acidithiobacillia 0 7 1918 1807140 class 28 order 225057 6 0 1917 Acidithiobacillales 1 17 225058 family 0 5 1889 Acidithiobacillaceae 1 20 1 Acidithiobacillus 1872 0 4 genus 119977 0 624 1 species 33059 Acidithiobacillus caldus Acidithiobacillus ferrooxidans 920 species 546 0 1 Acidithiobacillus ferrivorans species 160808 0 1 682 subphylum 68525 248030 0 198 404 28221 class 126 0 157783 Deltaproteobacteria 1 364 Desulfuromonadales 1 69541 order 30208 0 24 family 213421 9331 0 9 Desulfuromonadaceae 1 81 1 Desulfuromonas 3 0 3351 890 genus 17 Desulfuromonas soudanensis 0 1 1557 species 1603606 2614637 no rank 1 1777 0 Desulfuromonas sp. DDH964 species 1823759 0 1 1777 Pelobacter 1 18 genus 5 0 5899 43 Pelobacter acetylenicus 29542 species 1 0 1327 1 0 1265 2620299 no rank Pelobacter sp. SFB93 1265 0 1 1842532 species Pelobacter propionicus 29543 species 0 2250 1 Pelobacter carbinolicus 0 1014 1 species 19 103 Geobacteraceae 1 family 213422 14 0 20513 Geobacter 1 28231 genus 11 0 18743 234 Geobacter daltonii 0 1 1319 1203471 species Geobacter bemidjiensis 225194 species 1841 0 1 Geobacter sulfurreducens 35554 species 0 1 1966 no rank 2627627 4530 2 0 species 443144 0 1914 1 Geobacter sp. M21 Geobacter sp. M18 0 2616 1 species 443143 0 1659 1 species 28232 Geobacter metallireducens species 351604 1 0 1523 Geobacter uraniireducens Geobacter anodireducens species 1340425 1 0 1878 Geobacter pickeringii 1862 0 1 species 345632 Geobacter lovleyi species 313985 1 0 1931 Geoalkalibacter 1 genus 392332 2 0 1667 3 Geoalkalibacter subterraneus species 483547 1 0 1664 order 213462 0 10 3860 Syntrophobacterales 1 19 0 2601 6 213468 family 1 Syntrophaceae 23 2 0 703 2357 genus 1 Desulfomonile 3 0 1 700 species 2358 Desulfomonile tiedjei 2 0 1147 43773 genus 1 Syntrophus 9 1138 0 1 316277 species Syntrophus aciditrophicus genus 60892 0 728 1 species 60893 0 728 1 Desulfobacca acetoxidans 10 0 3 1240 family 213465 1 Syntrophobacteraceae 16 1 Syntrophobacter 2 0 1230 29526 genus 0 1214 1 119484 species Syntrophobacter fumaroxidans order 453227 0 4 2332 Desulfarculales 1 27 1 Desulfarculaceae 0 3 2305 family 453228 10 genus 453229 0 2295 2 Desulfarculus 1 51 453230 species 2244 0 1 Desulfarculus baarsii 499 1 Myxococcales 0 38 46248 order 29 224462 suborder 2503 3 0 224464 family 3 0 2503 Kofleriaceae 1 21 0 2482 2 162027 genus 1 Haliangium 23 species 80816 0 2459 1 Haliangium ochraceum 26 34548 0 80811 suborder 1524213 family 0 3 1273 Vulgatibacteraceae 1 50 23 Vulgatibacter 1 1524214 genus 2 0 1223 0 1 1200 species 1391653 Vulgatibacter incomptus 15901 0 9 31 family 1 Myxococcaceae 82 445 Myxococcus 1 32 genus 0 10757 5 0 4152 1 33 species Myxococcus fulvus Myxococcus hansupus species 1297742 0 2305 1 83455 species 0 1 1900 Myxococcus stipitatus Myxococcus xanthus 1 0 1955 species 34 68 1 Corallococcus 5062 0 3 83461 genus 184914 species 0 2567 1 Corallococcus coralloides Myxococcus macrosporus 2427 0 1 species 35 85 7660 0 5 1524215 family 1 Anaeromyxobacteraceae 240 genus 161492 0 4 7575 Anaeromyxobacter 1 Anaeromyxobacter dehalogenans 161493 species 1 0 3665 2620896 no rank 2 3670 0 Anaeromyxobacter sp. Fw109-5 404589 species 1502 0 1 Anaeromyxobacter sp. K species 447217 1 0 2168 161 0 9 9714 39 family 1 Archangiaceae 1 Stigmatella 0 2 1893 genus 40 10 species 41 1883 0 1 Stigmatella aurantiaca genus 47 0 2 3050 Archangium 1 9 0 1 3041 species 48 Archangium gephyra 22 Melittangium 1 genus 44 2 0 2071 0 2049 1 species 83453 Melittangium boletus genus 42 0 2539 2 Cystobacter 1 24 Cystobacter fuscus 43 species 0 1 2515 0 8 8698 80812 suborder 75 family 49 0 7403 5 Polyangiaceae 1 71 5606 0 2 genus 39643 1 Sorangium Sorangium cellulosum 56 species 0 1 5535 3 Chondromyces 1 50 genus 0 1722 2 52 species 1 0 1719 Chondromyces crocatus 8 Sandaracinaceae 1 1055686 family 3 0 1295 genus 1055688 2 0 1287 Sandaracinus 1 39 Sandaracinus amylolyticus 927083 species 1 0 1248 Desulfobacterales 1 order 213118 0 13363 20 134 family 213119 10 0 7275 Desulfobacteraceae 1 24 genus 896 3 0 3048 Desulfococcus 1 8 Desulfococcus oleovorans 0 1464 1 181663 species Desulfococcus multivorans 897 species 0 1576 1 9 genus 218207 0 1624 2 Desulfatibacillum 1 Desulfatibacillum alkenivorans species 259354 1615 0 1 1 1 Desulfobacterium 2 0 863 2295 genus 1 0 862 2296 species Desulfobacterium autotrophicum 1 Desulfobacula 1 genus 28222 0 1716 2 Desulfobacula toluolica species 28223 1715 0 1 213121 family 5954 0 9 Desulfobulbaceae 1 16 6 53318 genus 0 2 979 Desulfocapsa 1 1 0 973 65555 species Desulfocapsa sulfexigens 0 1491 2 genus 427922 1 Desulfurivibrio 2 0 1489 1 427923 species Desulfurivibrio alkaliphilus 7 genus 893 0 2627 2 Desulfobulbus 1 1986146 species 1 0 2620 Desulfobulbus sp. ORNL 5 1 Desulfotalea 0 2 841 109168 genus 0 1 836 species 84980 Desulfotalea psychrophila 1762 4 0 order 213113 0 4 1762 family 117942 3 1 Hippea 0 2 800 genus 84404 797 0 1 84405 species Hippea maritima 2 1 Desulfurella 0 962 2 genus 33001 Desulfurella acetivorans 0 1 960 species 33002 Desulfovibrionales 1 213115 order 59606 0 25 384 29 213116 family 0 4 4661 Desulfomicrobiaceae 1 genus 898 4632 0 3 Desulfomicrobium 1 51 2413 0 1 species 899 Desulfomicrobium baculatum Desulfomicrobium orale species 132132 0 2168 1 246 family 194924 0 18 53747 Desulfovibrionaceae 1 309 Desulfovibrio 1 872 genus 38991 0 9 Desulfovibrio fairfieldensis species 44742 4431 0 1 2593640 no rank 1 0 2328 Desulfovibrio sp. G11 0 1 2328 631220 species Desulfovibrio alaskensis 58180 species 0 1 2670 901 species 9310 0 1 Desulfovibrio piger Desulfovibrio desulfuricans 876 species 1 0 6576 Desulfovibrio vulgaris 9322 0 1 species 881 Candidatus Desulfovibrio trichonymphae 1 0 946 1725232 species species 184917 0 1 3099 Desulfovibrio magneticus 2582840 genus 2511 1 0 Desulfovibrio africanus 2511 0 1 species 873 33 genus 41707 0 2125 2 Lawsonia 1 Lawsonia intracellularis 0 2092 1 species 29546 1 1909 0 2794998 genus 880 species 1909 0 1 Desulfovibrio salexigens 78 1 Pseudodesulfovibrio 4 0 7965 genus 2035811 3500 0 1 species 1716143 Pseudodesulfovibrio indicus 1256 0 1 57320 species Pseudodesulfovibrio profundus 3131 0 1 182210 species Pseudodesulfovibrio aespoeensis 814 2 0 family 213117 Desulfohalobium 1 genus 45662 0 2 814 7 Desulfohalobium retbaense 807 0 1 species 45663 302 class 29547 0 72 90247 Epsilonproteobacteria 1 0 87845 65 order 213849 1 Campylobacterales 3108 5 0 2219 family 2771472 0 692 2 genus 269260 1 Nitratifractor 3 Nitratifractor salsuginis 269261 species 1 0 689 5 genus 265570 3 0 1527 Sulfurovum 1 2646778 no rank 0 886 1 Sulfurovum sp. NBC37-1 species 387093 0 1 886 Sulfurovum lithotrophicum 636 0 1 species 206403 1859 0 4 2771471 family 38 1 Sulfurimonas 0 1338 3 genus 202746 0 1 940 species 202747 Sulfurimonas autotrophica species 39766 1 0 360 Sulfurimonas denitrificans 521 1 0 genus 286130 1 0 521 species 148813 Sulfuricurvum kujiense 7099 family 72294 41 0 74251 Campylobacteraceae 1 2321108 no rank 0 5 4749 2321187 genus 1 0 1069 1850254 species 1069 0 1 Arcobacter sp. LPB0137 no rank 2321207 0 1 1211 0 1 1211 944547 species Arcobacter sp. L 0 2469 3 28196 genus 1 Arcobacter 32 Arcobacter butzleri species 28197 1611 0 1 826 0 1 species 28199 Arcobacter nitrofigilis 837 Campylobacter 1 194 genus 57645 0 26 Campylobacter subantarcticus species 497724 0 412 1 488546 species 605 0 1 Campylobacter peloridis species 374106 0 554 1 Campylobacter cuniculorum Campylobacter hominis 1 0 617 species 76517 Campylobacter pinnipediorum species 1965231 0 990 1 Campylobacter coli 0 21655 1 195 species Campylobacter hyointestinalis 0 1 638 species 198 Campylobacter avium 488 0 1 522485 species 1031542 species 0 473 1 Campylobacter volucris 1244531 species 0 1 525 Campylobacter iguaniorum Campylobacter fetus 196 species 0 1 1519 1 0 588 200 species Campylobacter curvus 1542 0 4 no rank 2593542 Campylobacter sp. RM12175 species 1660076 500 0 1 0 239 1 species 1660073 Campylobacter sp. RM6137 Campylobacter sp. RM8964 species 1660074 0 1 367 0 436 1 1500960 species Campylobacter sp. RM16704 Campylobacter concisus 1139 0 1 species 199 Campylobacter insulaenigrae 1 0 429 species 260714 827 species 785 0 1 Campylobacter ureolyticus species 201 1606 0 1 Campylobacter lari Campylobacter gracilis 1 0 769 species 824 1022 0 1 206 species Campylobacter sputorum Campylobacter helveticus 0 640 1 species 28898 75658 species 1 0 1520 Campylobacter lanienae 197 species 0 18292 1 Campylobacter jejuni Sulfurospirillum 1 genus 57665 0 9 4758 113 467 0 1 194424 species Sulfurospirillum halorespirans Sulfurospirillum multivorans species 66821 1 0 597 Sulfurospirillum cavolei 0 1 691 366522 species 44674 species 0 1 367 Sulfurospirillum barnesii no rank 2618290 3 0 1977 Sulfurospirillum sp. JPD-1 species 220622 1 0 506 1 0 509 species 1581011 Sulfurospirillum sp. UCH001 Sulfurospirillum sp. SL2-1 962 0 1 1986224 species Sulfurospirillum deleyianum species 65553 546 0 1 14 0 6408 family 72293 1 Helicobacteraceae 52 564 1 0 genus 843 Wolinella succinogenes 0 564 1 844 species 1 Helicobacter 12 0 5792 209 genus 6 Helicobacter bilis 37372 species 1 0 563 Helicobacter pylori 0 1 2274 species 210 0 1 354 1591088 species Helicobacter himalayensis 0 800 1 species 138563 Helicobacter cetorum 212 species 0 1 184 Helicobacter acinonychis 0 1 264 no rank 2593540 Helicobacter sp. MIT 01-6242 222136 species 0 1 264 Helicobacter mustelae 200 0 1 217 species 0 1 375 213 species Helicobacter cinaedi 0 1 111 species 214 Helicobacter felis 0 1 245 76936 species Helicobacter typhlonius Helicobacter hepaticus 416 0 1 species 32025 1 Nautiliales 0 2100 6 235899 order 1 3 Nautiliaceae 1 family 224467 3 0 1406 genus 191291 0 2 1403 Nautilia 1 20 Nautilia profundicola 0 1383 1 species 244787 family 2795691 2 0 693 269258 genus 0 2 693 Nitratiruptor 1 1 2624044 no rank 0 692 1 Nitratiruptor sp. SB155-2 species 387092 1 0 692 3 1155 0 1930617 phylum 1 Calditrichae 3 0 1155 1962850 class 1 2 1154 0 1962852 order 1962854 family 2 1154 0 2 0 1154 genus 187144 1 Caldithrix 1 Caldithrix abyssi 187145 species 0 1 1153 0 43 15443 200918 phylum 43 0 15443 188708 class 1 Thermotogae 13 Thermotogales 1 order 2419 0 10273 28 10 26 1 Thermotogaceae 0 5800 17 family 188709 85 genus 2335 3675 0 11 Thermotoga 1 0 1 381 93930 species Thermotoga naphthophila Thermotoga profunda 1508420 species 611 0 1 Thermotoga maritima 2336 species 0 414 1 no rank 2631113 4 0 1245 Thermotoga sp. Cell2 species 1157947 0 1 331 species 126740 1 0 291 Thermotoga sp. RQ2 Thermotoga sp. 2812B 347 0 1 species 1157948 276 0 1 species 126738 Thermotoga sp. RQ7 Thermotoga neapolitana 1 0 262 species 2337 93929 species 0 1 303 Thermotoga petrophila 1508419 species 1 0 374 Thermotoga caldifontis 1 Pseudothermotoga 5 0 2099 genus 1643951 26 Pseudothermotoga elfii 0 526 1 species 38322 species 177758 0 1 540 Pseudothermotoga lettingae 1 0 366 species 119394 Pseudothermotoga thermarum 1 0 641 species 57487 Pseudothermotoga hypogea 4463 0 10 family 1643950 1 Fervidobacteriaceae 23 9 genus 2420 5 0 2778 Thermosipho 1 Thermosipho melanesiensis 0 632 1 46541 species 1 0 820 species 2421 Thermosipho africanus 1317 2 0 2676525 no rank Thermosipho sp. 1063 species 1462747 668 0 1 species 1437364 0 1 649 Thermosipho sp. 1070 2422 genus 0 4 1662 Fervidobacterium 1 19 Fervidobacterium pennivorans 671 0 1 93466 species Fervidobacterium islandicum 0 1 459 species 2423 2424 species 1 0 513 Fervidobacterium nodosum 19 0 8 3645 order 1643947 1 Petrotogales 3626 0 7 family 1643949 genus 160798 0 3 2301 Marinitoga 1 16 species 149715 0 1 1121 Marinitoga piezophila no rank 2640159 1164 0 1 Marinitoga sp. 1137 1545835 species 0 1164 1 Defluviitoga 1 genus 1511648 0 2 604 10 Defluviitoga tunisiensis 0 594 1 1006576 species 10 1 Petrotoga 0 2 721 genus 28236 0 1 711 species 69499 Petrotoga mobilis order 1643946 0 6 1512 1 Kosmotogaceae 1512 0 6 family 1643948 30 7 0 805 3 651456 genus 1 Kosmotoga 480 0 1 1330330 species Kosmotoga pacifica species 651457 1 0 318 Kosmotoga olearia Mesotoga 1 1184396 genus 677 0 2 11 1184387 species 0 666 1 Mesotoga prima 2138240 phylum 544 3 0 3 0 544 class 2138243 1 Coprothermobacteria 1 0 543 2 2138246 order Coprothermobacteraceae 1 2138247 family 543 0 2 1 542 1 0 68335 genus 1 0 542 35786 species Coprothermobacter proteolyticus clade 1783272 1718 0 23323392 544448 phylum 41968 0 100 Tenericutes 1 5 2831 2 0 no rank 713063 Tenericutes bacterium MZ-XQ 0 1 1331 1911683 species Tenericutes bacterium MO-XQ 0 1 1500 species 1911684 83 class 31969 0 96 38125 Mollicutes 1 13 Mycoplasmatales 1 order 2085 0 43 14732 1 Mycoplasmataceae 42 0 14719 family 2092 44 12 0 4958 genus 2767358 356 0 1 2113 species Mycoplasma californicum 0 270 1 species 2109 Mycoplasma synoviae Mycoplasma bovigenitalium species 2112 272 0 1 species 29553 275 0 1 Mycoplasma bovirhinis species 2094 302 0 1 Mycoplasma arginini Mycoplasma bovis 0 1 777 species 28903 0 1 363 species 48003 Mycoplasma pullorum 508 0 1 2115 species Mycoplasma fermentans 0 401 1 2107 species Mycoplasma pulmonis Mycoplasma canis 1 0 386 species 29555 Mycoplasma cynos 171284 species 523 0 1 Mycoplasma agalactiae species 2110 0 1 525 150 1 Mycoplasma 27 0 9037 genus 2093 Mycoplasma bovoculi 45362 species 1 0 192 Mycoplasma canadense species 29554 1 0 375 Mycoplasma suis 0 1 138 species 57372 0 1 316 species 2118 Mycoplasma mobile Mycoplasma hyopneumoniae 341 0 1 2099 species 2683645 no rank 1 379 0 0 1 379 species 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) species 51365 0 457 1 Mycoplasma yeatsii Mycoplasma gallisepticum 1 0 416 2096 species Mycoplasma genitalium 2097 species 0 1 152 2098 species 1 0 865 Mycoplasma hominis 2100 species 349 0 1 Mycoplasma hyorhinis species 984991 0 1 96 Mycoplasma parvum Mycoplasma dispar 0 1 281 86660 species Mycoplasma flocculare species 2128 0 146 1 28227 species 1 0 393 Mycoplasma penetrans Mycoplasma haemofelis species 29501 1 0 106 0 1 92 136241 species Mycoplasma haemocanis species 50052 1 0 409 Mycoplasma crocodyli species 171632 0 82 1 Mycoplasma ovis 3 2540 0 species group 656088 2105 species 388 0 1 Mycoplasma leachii 553 0 1 species 2095 Mycoplasma capricolum 1599 0 1 2102 species Mycoplasma mycoides species 65123 0 1 53 Mycoplasma wenyonii 2123 species 308 0 1 Mycoplasma putrefaciens Mycoplasma arthritidis 2111 species 1 0 346 55 0 1 2104 species Mycoplasma pneumoniae genus 2129 680 0 2 Ureaplasma urealyticum 2130 species 0 1 376 Ureaplasma parvum species 134821 0 1 304 26 0 13 6510 order 186329 1 Acholeplasmatales 62 1 Acholeplasmataceae 6484 0 12 2146 family 0 6 1393 genus 33926 1 Candidatus Phytoplasma 66 0 3 713 species group 85620 100379 species 253 0 1 Onion yellows phytoplasma 229545 species 1 0 222 Aster yellows witches'-broom phytoplasma species 202462 0 238 1 Maize bushy stunt phytoplasma 85630 species group 409 0 1 Candidatus Phytoplasma mali 37692 species 1 0 409 85632 species group 0 205 1 59748 species 205 0 1 Candidatus Phytoplasma australiense 97 Acholeplasma 1 genus 2147 5029 0 5 35623 species 0 1411 1 Acholeplasma oculi Acholeplasma laidlawii 2148 species 1122 0 1 Acholeplasma brassicae species 61635 0 999 1 Acholeplasma palmae species 38986 0 1400 1 32 39 0 16800 order 186328 1 Entomoplasmatales 12 1 Entomoplasmataceae 6206 0 14 33925 family Entomoplasma 1 46238 genus 1928 0 5 13 species 214888 296 0 1 Entomoplasma luminosum Entomoplasma melaleucae 570 0 1 81459 species 1 0 417 species 74700 Entomoplasma freundtii 1 0 632 215578 species Entomoplasma somnilux genus 46239 0 8 4266 Mesoplasma 1 135 0 1 679 225999 species Mesoplasma syrphidae Mesoplasma coleopterae 1 0 345 species 324078 Mesoplasma chauliocola 1 0 432 216427 species 219745 species 353 0 1 Mesoplasma tabanidae 1 0 838 2151 species Mesoplasma florum Mesoplasma lactucae 1074 0 1 species 138853 Mesoplasma entomophilum 2149 species 1 0 410 0 24 10562 2131 family 1 Spiroplasmataceae 14 0 10548 23 genus 2132 1 Spiroplasma 280 Spiroplasma floricola 0 647 1 species 216937 Spiroplasma syrphidicola 0 1 328 216945 species Spiroplasma diminutum 1 0 375 species 216936 species 216938 1 0 566 Spiroplasma helicoides species 2133 0 1 405 Spiroplasma citri species 315358 0 593 1 Spiroplasma eriocheiris species 47834 0 302 1 Spiroplasma kunkelii Spiroplasma cantharicola species 362837 0 1 574 Spiroplasma litorale 216942 species 0 570 1 Spiroplasma culicicola 0 434 1 216935 species Spiroplasma turonicum 216946 species 481 0 1 469 0 1 species 2137 Spiroplasma apis Spiroplasma mirum 2144 species 0 482 1 543 0 1 species 216933 Spiroplasma chrysopicola Spiroplasma sabaudiense 216944 species 1 0 415 species 2136 1 0 347 Spiroplasma monobiae 882 2 0 no rank 2637901 Spiroplasma sp. TU-14 441 0 1 1898044 species Spiroplasma sp. NBRC 100390 0 1 441 species 1914410 324 0 1 species 2145 Spiroplasma taiwanense 0 1 506 species 2139 Spiroplasma clarkii Spiroplasma corruscae 0 531 1 216934 species Spiroplasma atrichopogonis 1 0 494 1114980 species 1 1007 0 no rank 2799557 1 1007 0 genus 1912503 no rank 2624196 1 1007 0 Candidatus Izimaplasma sp. HR1 species 1541959 1 0 1007 67819 phylum 0 767 5 5 1663419 class 0 5 767 Fimbriimonadia 1 4 0 762 1663425 order 1 Fimbriimonadales 6 11 1663426 family 0 3 756 Fimbriimonadaceae 1 1 1 Fimbriimonas 0 745 2 genus 1005038 Fimbriimonas ginsengisoli 1005039 species 0 1 744 148 67727 0 clade 1798711 Cyanobacteria 1 phylum 1117 0 148 67727 17 16688 0 42 subclass 1301283 1118 order 10188 0 23 Chroococcales 1 12 4 Microcystaceae 1 family 1890449 0 2200 4 11 1 Microcystis 0 2196 3 genus 1125 2643300 no rank 1 731 0 species 1967666 731 0 1 Microcystis sp. MC19 1126 species 1454 0 1 Microcystis aeruginosa 1 1 Aphanothecaceae 9 0 4464 1890450 family 1 0 573 genus 263510 1 573 0 species 2546360 573 0 1 strain 43989 Cyanothece sp. ATCC 51142 532 2 0 no rank 92682 1 Halothece 0 532 2 76023 genus 56 1 0 476 no rank 2632878 species 65093 476 0 1 Halothece sp. PCC 7418 1700 2 0 genus 28070 1027 0 1 species 2546356 1 0 1027 65393 strain Cyanothece sp. PCC 7424 673 1 0 species 2546359 Cyanothece sp. PCC 7822 0 1 673 strain 497965 1123 2 0 2546365 genus species 2546366 0 2 1123 0 437 1 41431 strain Cyanothece sp. PCC 8801 Cyanothece sp. PCC 8802 686 0 1 395962 strain genus 1453359 535 1 0 713887 species 535 0 1 Candidatus Atelocyanobacterium thalassa 2 1 Cyanobacteriaceae 812 0 2 1890452 family 0 1 810 102234 genus Cyanobacterium aponinum 379064 species 0 810 1 8 1 Chroococcaceae 2700 0 7 1890464 family 0 593 2 genus 102231 1 Gloeocapsa 2 no rank 2623012 1 0 591 species 1173026 591 0 1 Gloeocapsa sp. PCC 7428 genus 268175 507 1 0 507 0 1 2648896 no rank Chondrocystis sp. NIES-4102 2005460 species 1 0 507 13 genus 669357 0 1592 3 Geminocystis 1 no rank 2625037 2 1579 0 Geminocystis sp. NIES-3708 0 1 904 species 1615909 Geminocystis sp. NIES-3709 1 0 675 1617448 species 39 1 Oscillatoriales 6500 0 19 order 1150 3 1 Microcoleaceae 4 0 1722 1892252 family 0 1 535 genus 44471 2642155 no rank 1 0 535 Microcoleus sp. PCC 7113 1 0 535 species 1173027 Trichodesmium 1 genus 1205 0 2 1184 3 1181 0 1 1206 species Trichodesmium erythraeum Coleofasciculaceae 1 1892251 family 742 0 2 15 63132 genus 727 1 0 1 727 0 no rank 2648775 Geitlerinema sp. PCC 7407 1173025 species 727 0 1 12 1 Cyanothecaceae 0 538 3 1892249 family 28 2 0 526 43988 genus 1 Cyanothece 498 0 1 2649277 no rank 498 0 1 species 395961 Cyanothece sp. PCC 7425 8 0 919 3 1892255 family 1 Gomontiellaceae genus 241421 0 2 911 Crinalium 1 3 1 0 908 241425 species Crinalium epipsammum 2540 0 6 family 1892254 1 Oscillatoriaceae 13 19 1155738 genus 702 0 2 Moorea 1 1 0 683 1155739 species Moorea producens 1 Oscillatoria 0 1825 3 1158 genus 1 Oscillatoria nigro-viridis 1 0 868 482564 species Oscillatoria acuminata 118323 species 0 956 1 Nostocales 1 order 1161 0 17728 33 35 12 Rivulariaceae 1 1185 family 0 1289 3 8 genus 373984 0 1277 2 Rivularia 1 no rank 2676603 1269 1 0 0 1269 1 373994 species Rivularia sp. PCC 7116 1 646 0 no rank 1219117 1 0 646 1940762 species Nostocales cyanobacterium HT-58-2 0 5466 8 family 2661849 38 1 Calothrix 8 0 5466 1186 genus species 32054 0 707 1 Calothrix parietina 4721 6 0 2619626 no rank Calothrix sp. NIES-3974 1 0 490 species 2005462 1 0 486 species 99598 Calothrix sp. PCC 7507 Calothrix sp. NIES-4101 2005461 species 0 1 1184 Calothrix sp. 336/3 species 1337936 0 552 1 Calothrix sp. NIES-2098 species 1954171 813 0 1 Calothrix sp. NIES-4071 0 1196 1 2005469 species Hapalosiphonaceae 1 1892263 family 2 0 626 14 612 1 0 genus 1190 1 612 0 no rank 494603 612 0 1 1752063 species Fischerella sp. NIES-3754 1 Nostocaceae 9666 0 18 1162 family 54 Nostoc 1 genus 1177 0 10 6263 95 0 934 1 species 1306274 Nostoc flagelliforme 4538 7 0 2593658 no rank Nostoc sp. CENA543 0 652 1 1869241 species Nostoc sp. PCC 7120 103690 species 0 1 712 Nostoc sp. PCC 7107 317936 species 0 1 444 590 0 1 species 1618022 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1261031 species 0 1 873 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 0 485 1751286 species Nostoc sp. NIES-3756 Nostoc sp. PCC 7524 species 28072 782 0 1 Nostoc punctiforme 0 1 696 272131 species 4 1 Anabaena 0 4 2315 1163 genus 0 2 1467 no rank 2619674 Anabaena sp. 90 species 46234 642 0 1 0 1 825 1647413 species Anabaena sp. WA102 Anabaena cylindrica 0 844 1 species 1165 0 3 1034 264688 genus 1 Trichormus 1 Trichormus variabilis 264691 species 0 535 1 1164 species 1 0 498 Trichormus azollae Synechococcales 1 order 1890424 27991 0 56 302 3 2872 0 5 family 1213 1 Prochloraceae 4 Prochlorococcus 1 genus 1218 0 4 2869 Prochlorococcus marinus 0 2260 1 1219 species 605 0 2 2627481 no rank Prochlorococcus sp. MIT 0801 319 0 1 species 1501269 Prochlorococcus sp. MIT 0604 0 1 286 1501268 species family 1890438 3296 0 6 Leptolyngbyaceae 1 43 13 47251 genus 0 3253 5 Leptolyngbya 1 0 1 765 1184 species Leptolyngbya boryana 2650499 no rank 2475 3 0 0 626 1 species 1752064 Leptolyngbya sp. NIES-3755 Leptolyngbya sp. PCC 7376 species 111781 0 1 674 Leptolyngbya sp. O-77 1 0 1175 species 1080068 family 1890436 0 2 374 1152 genus 2 0 374 Pseudanabaena 1 9 1 0 365 no rank 2593292 Pseudanabaena sp. PCC 7367 82654 species 0 365 1 2 5 0 1945 1890428 family 1 Merismopediaceae Synechocystis 1 1142 genus 0 1943 4 60 no rank 2640012 0 3 1883 Synechocystis sp. IPPAS B-1465 544 0 1 2116702 species species 1148 0 544 1 Synechocystis sp. PCC 6803 Synechocystis sp. PCC 6714 species 1147 0 1 795 105 33 0 18159 family 1890426 1 Synechococcaceae 1 Synechococcus 13211 0 26 1129 genus 328 no rank 2626047 0 11795 23 species 195248 214 0 1 Synechococcus sp. PCC 8807 Synechococcus sp. PCC 7502 species 1173263 0 308 1 0 557 1 species 316278 Synechococcus sp. RCC307 Synechococcus sp. WH 8103 693 0 1 species 29410 Synechococcus sp. WH 8102 0 763 1 species 84588 Synechococcus sp. UTEX 2973 0 733 1 species 1350461 236 0 1 species 195498 Synechococcus sp. PCC 7117 species 32049 324 0 1 Synechococcus sp. PCC 7002 species 32051 0 1 495 Synechococcus sp. WH 7803 Synechococcus sp. CC9311 species 64471 0 1 274 321327 species 0 1 1007 Synechococcus sp. JA-3-3Ab 1 0 236 374982 species Synechococcus sp. PCC 73109 Synechococcus sp. KORDI-52 585425 species 416 0 1 1 0 292 1827144 species Synechococcus sp. NIES-970 321332 species 0 1 604 Synechococcus sp. JA-2-3B'a(2-13) 1 0 383 316279 species Synechococcus sp. CC9902 Synechococcus sp. CC9605 species 110662 0 748 1 Synechococcus sp. PCC 6312 0 188 1 195253 species 0 710 1 585423 species Synechococcus sp. KORDI-49 1916956 species 0 687 1 Synechococcus sp. SynAce01 842 0 1 374981 species Synechococcus sp. PCC 7003 Synechococcus sp. WH 8109 0 1 708 species 166314 Synechococcus sp. KORDI-100 1280380 species 377 0 1 391 0 1 33070 species Synechococcus lividus Synechococcus elongatus 0 697 1 32046 species genus 146785 400 1 0 0 1 400 146786 species Thermosynechococcus elongatus Dactylococcopsis 1 13034 genus 0 566 2 56 species 292566 0 1 510 Dactylococcopsis salina 0 3 3877 167375 genus 1 Cyanobium 67 1 0 2110 no rank 2627006 Cyanobium sp. NIES-981 1851505 species 2110 0 1 1700 0 1 species 59930 Cyanobium gracile 2303730 family 2 570 0 8 Halomicronema 1 genus 170610 570 0 2 562 0 1 1209493 species Halomicronema hongdechloris 2 473 0 family 1890429 1 2 0 473 155977 genus 1 Acaryochloris 0 1 472 species 155978 Acaryochloris marina 107 0 2533 6 307596 class 1 Gloeobacteria 80 Gloeobacterales 1 307595 order 2426 0 5 family 1890422 0 4 2346 Gloeobacteraceae 1 30 33071 genus 0 2316 3 Gloeobacter 1 14 Gloeobacter violaceus species 33072 1 0 1185 1117 0 1 1416614 species Gloeobacter kilaueensis 405 0 1 no rank 1983111 cyanobacterium endosymbiont of Epithemia turgida 0 405 1 718217 species 0 664 2 1890505 order 2 664 0 1890528 family 54298 genus 664 0 2 Chroococcidiopsis 1 1 663 0 1 species 54299 Chroococcidiopsis thermalis 4 0 1701 7 52604 order 1 Pleurocapsales 8 0 690 2 1890500 family 1 Hyellaceae genus 44474 682 1 0 54308 species 1 0 682 Pleurocapsa minor 3 Dermocarpellaceae 1 family 1890498 4 0 1007 Stanieria 1 genus 102115 1004 0 3 3 1 481 0 2642663 no rank 0 1 481 species 1807358 Stanieria sp. NIES-3757 Stanieria cyanosphaera 520 0 1 species 102116 201174 phylum 0 651 3943994 Actinobacteria 1 170 0 1319 7 class 84992 1 Acidimicrobiia 6 Acidimicrobiales 1 84993 order 0 1313 6 28 Acidimicrobiaceae 1 84994 family 296 0 3 6 0 2 290 53634 genus 1 Acidimicrobium 17 Acidimicrobium ferrooxidans 53635 species 0 273 1 2448023 family 2 0 989 Ilumatobacter 1 genus 682522 989 0 2 8 Ilumatobacter coccineus 981 0 1 467094 species 7569 3833784 0 596 class 1760 1 Actinobacteria 907 1 Corynebacteriales 161 0 131351 85007 order 585 1 0 no rank 697024 0 585 1 1847725 genus Lawsonella clevelandensis 1 0 585 1528099 species 4 0 1618 85029 family 1 Dietziaceae 15 18 Dietzia 1 37914 genus 0 3 1603 2617939 no rank 1 0 857 857 0 1 712270 species Dietzia sp. oral taxon 368 499555 species 728 0 1 Dietzia timorensis 15 Tsukamurellaceae 1 family 85028 1975 0 4 29 1 Tsukamurella 0 1960 3 2060 genus Tsukamurella paurometabola 0 716 1 species 2061 Tsukamurella tyrosinosolvens 57704 species 0 1 1215 21 1 Segniliparaceae 3 0 685 family 316606 20 0 664 2 genus 286801 1 Segniliparus 286802 species 1 0 644 Segniliparus rotundus 108 Gordoniaceae 1 85026 family 6278 0 9 158 1 Gordonia 0 6170 8 2053 genus 2657482 no rank 1794 2 0 0 1 1021 337191 species Gordonia sp. KTR9 773 0 1 species 2059875 Gordonia sp. YC-JH1 Gordonia phthalatica 0 1 1154 species 1136941 0 1 593 1004901 species Gordonia iterans 0 1 888 species 2055 Gordonia terrae species 2054 0 1 564 Gordonia bronchialis Gordonia polyisoprenivorans 1019 0 1 84595 species 126 44981 0 56 family 1762 1 Mycobacteriaceae genus 1866885 13193 13 0 1766 species 0 792 1 Mycobacterium fortuitum Mycobacterium rhodesiae 1 0 808 36814 species 758802 species 1288 0 1 Mycobacterium litorale Mycobacterium aurum 1208 0 1 species 1791 species 1795 0 1 817 Mycobacterium neoaurum 0 1 1060 1800 species Mycobacterium chubuense Mycobacterium phlei species 1771 0 1 1106 species 134601 0 1 1076 Mycobacterium goodii Mycobacterium smegmatis species 1772 1 0 1217 species 1810 770 0 1 Mycobacterium vaccae 0 1 799 species 110539 Mycobacterium vanbaalenii 0 1 1239 1804 species Mycobacterium gilvum 0 1 1013 species 1797 Mycobacterium thermoresistibile genus 1073531 0 1461 2 Mycobacterium terrae 1788 species 0 1 753 0 1 708 875328 species Mycobacterium sinense 1 Mycobacterium 24659 0 34 genus 1763 1466 77643 species group 0 4 1612 species 78331 402 0 1 Mycobacterium canettii 1773 species 1210 0 3 Mycobacterium tuberculosis 1 422 Mycobacterium bovis 0 1 394 biotype 1765 Mycobacterium africanum 0 1 394 biotype 33894 Mycobacterium leprae 405 0 1 species 1769 0 857 1 1768 species Mycobacterium kansasii 2642494 no rank 10638 0 13 Mycobacterium sp. KMS 189918 species 1 0 722 Mycobacterium sp. VKM Ac-1817D species 1273687 849 0 1 Mycobacterium sp. QIA-37 0 1013 1 species 1561223 0 817 1 species 1570328 Mycobacterium sp. NRRL B-3805 species 1920667 1 0 936 Mycobacterium sp. WY10 212767 species 0 919 1 Mycobacterium sp. JS623 Mycobacterium sp. JLS 0 700 1 164757 species 1 0 305 1168287 species Mycobacterium sp. MOTT36Y Mycobacterium sp. MCS species 164756 1 0 701 Mycobacterium sp. YC-RL4 1682113 species 0 1 986 species 2051552 760 0 1 Mycobacterium sp. PYR15 1879023 species 1 0 1160 Mycobacterium sp. djl-10 1 0 770 1545728 species Mycobacterium sp. EPa45 29311 species 1 0 645 Mycobacterium haemophilum Mycobacterium liflandii 1 0 532 species 261524 Mycobacterium marinum 1781 species 0 652 1 Mycobacterium ulcerans 1809 species 0 1 630 species group 2249310 1 819 0 species 722731 0 819 1 Mycobacterium shigaense 1008 0 1 482462 species Mycobacterium dioxanotrophicus 120793 species group 8 5395 0 0 1162 1 339268 species Mycobacterium colombiense 0 1 228 1138383 species Mycobacterium paraintracellulare Mycobacterium avium 1764 species 0 1 2156 701042 species 1 0 648 Mycobacterium marseillense 311 species 1767 1201 0 4 Mycobacterium intracellulare 1 Mycobacterium chimaera 222805 subspecies 1 0 520 Mycobacterium indicus pranii 1 0 196 35617 subspecies 0 1 174 1203599 subspecies Mycobacterium yongonense 1 561 0 697025 genus 561 0 1 639313 species Hoyosella subflava 4981 5 0 670516 genus 0 1 2029 species 36809 Mycobacterium abscessus Mycobacterium chelonae 0 1 887 species 1774 species 83262 746 0 1 Mycobacterium immunogenum Mycobacterium stephanolepidis species 1520670 852 0 1 species 1578165 1 0 467 Mycobacterium saopaulense 343 family 1653 43998 0 52 Corynebacteriaceae 1 1716 genus 51 0 43655 Corynebacterium 1 1165 Corynebacterium camporealensis species 161896 895 0 1 Corynebacterium frankenforstense 1138 0 1 species 1230998 203263 species 1 0 1119 Corynebacterium aquilae species 169292 0 1 934 Corynebacterium aurimucosum 375 0 1 species 1652495 Corynebacterium crudilactis Corynebacterium maris 575200 species 0 1 803 1832 0 1 38289 species Corynebacterium jeikeium 0 1 407 species 136857 Corynebacterium testudinoris Corynebacterium argentoratense 42817 species 1 0 450 Corynebacterium glutamicum 1718 species 1 0 1264 Corynebacterium pseudotuberculosis 0 364 1 species 1719 970 0 1 species 108486 Corynebacterium falsenii species 38305 0 1 1847 Corynebacterium vitaeruminis Corynebacterium imitans species 156978 0 1 1121 1 0 721 species 1121358 Corynebacterium doosanense Corynebacterium halotolerans 225326 species 0 849 1 0 910 1 species 1223514 Corynebacterium humireducens Corynebacterium kroppenstedtii species 161879 0 473 1 Corynebacterium kutscheri 0 1 470 35755 species Corynebacterium ureicelerivorans 0 691 1 401472 species 858 0 1 species 1408191 Corynebacterium deserti 0 789 1 species 161895 Corynebacterium phocae 524 0 1 161899 species Corynebacterium singulare 35757 species 0 1 648 Corynebacterium cystitidis 1232 0 1 species 152794 Corynebacterium efficiens Corynebacterium sphenisci 191493 species 1 0 1153 824 0 1 species 1721 Corynebacterium callunae 514 0 1 1050174 species Corynebacterium epidermidicanis 0 735 1 191610 species Corynebacterium atypicum Corynebacterium resistens 258224 species 0 693 1 0 781 1 species 187491 Corynebacterium glaucum 0 727 1 43771 species Corynebacterium urealyticum 1727 species 1150 0 1 Corynebacterium variabile Corynebacterium lactis species 1231000 0 757 1 0 710 1 1705 species Corynebacterium stationis 694 0 1 species 1072256 Corynebacterium uterequi Corynebacterium casei 1 0 599 species 160386 Corynebacterium terpenotabidum 89154 species 1 0 571 1285 0 1 species 146827 Corynebacterium simulans Corynebacterium striatum 43770 species 0 1471 1 0 1100 1 species 349751 Corynebacterium marinum [Brevibacterium] flavum 1 0 628 92706 species species 1404244 0 1 826 Corynebacterium glyciniphilum 867 0 1 65058 species Corynebacterium ulcerans Corynebacterium ammoniagenes 1697 species 0 1 722 Corynebacterium diphtheriae 1 0 993 1717 species no rank 2624378 2 0 1517 species 702967 855 0 1 Corynebacterium sp. NML98-0116 Corynebacterium sp. ATCC 6931 species 1487956 0 1 662 Corynebacterium mustelae species 571915 873 0 1 0 1 616 28028 species Corynebacterium flavescens 1 Nocardiaceae 0 30324 31 family 85025 228 833 18643 0 23 1827 genus 1 Rhodococcus 0 1 921 191292 species Rhodococcus aetherivorans Rhodococcus rhodochrous species 1829 0 549 1 Rhodococcus erythropolis 769 0 1 species 1833 0 827 1 1828 species Rhodococcus fascians 103816 species 658 0 1 Rhodococcus pyridinivorans Rhodococcus ruber species 1830 1 0 897 Rhodococcus jostii 132919 species 1 0 1125 334542 species 0 603 1 Rhodococcus qingshengii species 43767 930 0 1 Rhodococcus hoagii Rhodococcus opacus 0 2619 1 species 37919 192944 no rank 12 7912 0 1564114 species 0 1 788 Rhodococcus sp. B7740 1 0 759 1805827 species Rhodococcus sp. MTM3W5.2 species 1723645 0 613 1 Rhodococcus sp. 008 Rhodococcus sp. PBTS 2 0 1 598 1653479 species Rhodococcus sp. H-CA8f species 1727214 1 0 672 Rhodococcus sp. WB1 1033922 species 0 794 1 1 0 595 1807790 species Rhodococcus sp. BH4 1570939 species 0 519 1 Rhodococcus sp. 2G 679318 species 0 1 460 Rhodococcus sp. WMMA185 Rhodococcus sp. YL-1 687 0 1 species 1045808 1653478 species 907 0 1 Rhodococcus sp. PBTS 1 935199 species 1 0 520 Rhodococcus sp. p52 232 Nocardia 1 genus 1817 0 11453 7 37330 species 1677 0 1 Nocardia nova 0 1 2470 135487 species Nocardia cyriacigeorgica Nocardia terpenica 0 1496 1 species 455432 37326 species 2316 0 1 Nocardia brasiliensis 1 0 1779 37332 species Nocardia seriolae Nocardia farcinica 1483 0 1 species 37329 1 Bifidobacteriales 25 0 3332644 order 85004 233 family 31953 0 3332411 24 Bifidobacteriaceae 1 10644 196081 genus 678 1 0 78259 species 1 0 678 Scardovia inopinata 2526 Bifidobacterium 1 1678 genus 0 3317715 19 species 1684 0 1 913 Bifidobacterium asteroides 0 2299 1 species 35760 Bifidobacterium choerinum 0 1 95278 1680 species Bifidobacterium adolescentis Bifidobacterium pseudolongum 0 4238 1 species 1694 Bifidobacterium angulatum species 1683 20019 0 1 0 1 1495 species 638619 Bifidobacterium actinocoloniiforme Bifidobacterium animalis 1 0 2333 28025 species Bifidobacterium bifidum 1 0 93090 species 1681 species 1685 0 104202 1 Bifidobacterium breve 0 1156 1 species 1687 Bifidobacterium coryneforme 0 2286 1 species 33905 Bifidobacterium thermophilum 158787 species 0 1 3548 Bifidobacterium scardovii 1691 species 1 0 1127 Bifidobacterium indicum species 1686 0 2 615060 Bifidobacterium catenulatum 1 180216 630129 subspecies 0 434844 1 Bifidobacterium kashiwanohense 1 0 11668 species 1689 Bifidobacterium dentium Bifidobacterium longum species 216816 1 0 549549 Bifidobacterium pseudocatenulatum species 28026 1806928 0 1 1 Gardnerella 0 2 2388 genus 2701 11 0 1 2377 species 2702 Gardnerella vaginalis genus 196082 986 0 1 1 0 986 species 78258 Parascardovia denticolens 14 1670 0 4 order 1643684 1 Nakamurellales Nakamurellaceae 1 family 85031 1656 0 3 28 genus 53460 1628 0 2 Nakamurella 1 5 53461 species 1 0 1623 Nakamurella multipartita 13 Catenulisporales 1 order 414714 4 0 2022 25 414877 family 3 0 2009 Catenulisporaceae 1 63 Catenulispora 1 genus 414878 0 1984 2 species 304895 1 0 1921 Catenulispora acidiphila 1 Frankiales 0 7 5156 order 85013 9 6 0 5147 74712 family 1 Frankiaceae 46 94 Frankia 1 1854 genus 5 0 5101 Frankia inefficax 1582 0 1 298654 species Frankia casuarinae 106370 species 808 0 1 species 1859 0 1193 1 Frankia alni no rank 2632575 1 1424 0 1 0 1424 298653 species Frankia sp. EAN1pec 1643818 no rank 2 963 0 genus 147067 2 0 963 Thermobispora 1 22 2006 species 0 941 1 Thermobispora bispora 6 0 3827 12 2039638 order 1 Candidatus Nanopelagicales 11 0 3821 2162846 family Candidatus Planktophila 1 622681 genus 7 0 2946 25 1 0 331 species 1884904 Candidatus Planktophila sulfonica 1884907 species 453 0 1 Candidatus Planktophila vernalis Candidatus Planktophila versatilis 0 1 610 1884905 species Candidatus Planktophila limnetica species 573600 266 0 1 Candidatus Planktophila dulcis 0 1 822 species 1884914 439 0 1 1884913 species Candidatus Planktophila lacus 25 2039639 genus 0 875 4 Candidatus Nanopelagicus 1 1884634 species 212 0 1 Candidatus Nanopelagicus limnes Candidatus Nanopelagicus abundans 451 0 1 1884916 species 0 187 1 1884915 species Candidatus Nanopelagicus hibericus 3 0 889 4 622450 order 1 Actinopolysporales 1 Actinopolysporaceae 0 886 3 622451 family 2 1 Actinopolyspora 2 0 884 genus 1849 6 Actinopolyspora erythraea 0 1 878 414996 species 0 362 1 52018 no rank 362 0 1 1650658 species Actinobacteria bacterium IMCC26256 274 Streptomycetales 1 85011 order 0 82 122614 1 Streptomycetaceae 122340 0 81 family 2062 738 114414 0 75 genus 1883 1 Streptomyces 3752 1834 0 1 species 68280 Streptomyces violaceusniger Streptomyces collinus 42684 species 0 1 1180 0 1196 1 species 68214 Streptomyces griseochromogenes Streptomyces autolyticus 0 1769 1 75293 species Streptomyces ambofaciens 1 0 1523 1889 species Streptomyces sp. S10(2016) 0 1 1300 species 1783515 Streptomyces pristinaespiralis species 38300 0 1357 1 Streptomyces lydicus 4162 0 1 47763 species 1926 species 1 0 1562 Streptomyces reticuli Streptomyces noursei 0 1 1461 species 1971 species 146923 0 1498 1 Streptomyces parvulus species 1355015 0 1098 1 Streptomyces pluripotens Streptomyces cattleya 29303 species 1418 0 1 0 24 32308 2593676 no rank Streptomyces sp. CMB-StM0423 0 1 1385 species 2059884 Streptomyces sp. 769 0 1511 1 1262452 species 1849967 species 1558 0 1 Streptomyces sp. SAT1 Streptomyces sp. CFMR 7 1649184 species 0 1 1039 1158 0 1 species 234612 Streptomyces sp. TN58 0 1551 1 1841249 species Streptomyces sp. RTd22 1267 0 1 species 465541 Streptomyces sp. Mg1 0 1292 1 2094021 species Streptomyces sp. WAC00288 species 1495638 0 1 1749 Streptomyces sp. M56 1 0 1868 1725411 species Streptomyces sp. CdTB01 0 907 1 1837283 species Streptomyces sp. S8 1964449 species 1212 0 1 Streptomyces sp. 3211 1 0 1643 444103 species Streptomyces sp. CNQ-509 Streptomyces sp. PAMC 26508 1265601 species 1 0 1090 Streptomyces sp. fd1-xmd 1217 0 1 1812480 species Streptomyces sp. Tue 6075 0 1 1128 1661694 species Streptomyces sp. FR-008 1 0 1534 species 206662 Streptomyces sp. Sge12 species 1972846 0 1 1768 species 1984801 1 0 1350 Streptomyces sp. CLI2509 Streptomyces sp. P3 0 1505 1 species 2135430 862751 species 1 0 779 Streptomyces sp. SirexAA-E 1010 0 1 species 1751294 Streptomyces sp. 4F 1561022 species 1283 0 1 Streptomyces sp. CCM_MD2014 Streptomyces sp. MOE7 1504 0 1 species 1961713 Streptomyces puniciscabiei 1582 0 1 species 164348 Streptomyces peucetius species 1950 0 1 1142 Streptomyces formicae 1 0 1098 species 1616117 species 553510 1 0 1698 Streptomyces gilvosporeus 0 2733 1 species 1888 Streptomyces albus Streptomyces lavendulae 1914 species 0 1721 1 1912 species 4261 0 1 Streptomyces hygroscopicus Streptomyces leeuwenhoekii 0 1 1020 species 1437453 1477431 species group 0 2 2721 species 42239 1 0 1539 Streptomyces sampsonii species 1902 0 1182 1 Streptomyces coelicolor 629295 species group 2 2599 0 species subgroup 1482558 1 0 1201 1908 species 1201 0 1 Streptomyces globisporus 1482596 species subgroup 1398 1 0 Streptomyces griseus 0 1 1398 species 1911 1 0 1492 species 1901 Streptomyces clavuligerus Streptomyces glaucescens 1 0 1141 1907 species Streptomyces alboflavus 0 1 1494 67267 species Streptomyces rubrolavendulae 0 1427 1 285473 species Streptomyces albireticuli species 1940 1 0 1175 species 54571 2430 0 1 Streptomyces venezuelae Streptomyces lincolnensis 1915 species 1 0 1472 species 193462 0 1 1257 Streptomyces niveus 92644 species 1 0 1706 Streptomyces malaysiensis Streptomyces xiamenensis species 408015 1559 0 1 1916 species 0 1 948 Streptomyces lividans Streptomyces avermitilis 33903 species 1 0 1163 0 1 1552 species 68570 Streptomyces albulus 1436 0 1 species 68192 Streptomyces cyaneogriseus 0 1255 1 1969 species Streptomyces chartreusis 1199 0 1 species 2049881 Streptomyces sp. XZHG99 1 0 976 1169025 species Streptomyces pratensis 1642299 species 0 1 1557 Streptomyces alfalfae Streptomyces violaceoruber 0 1 1099 species 1935 1 0 2646 species 68249 Streptomyces pactum Streptomyces bingchenggensis species 379067 2412 0 1 0 1 1318 1038928 species Streptomyces xinghaiensis Streptomyces scabiei 1930 species 0 1547 1 Streptomyces fulvissimus 0 1 870 68202 species Streptomyces vietnamensis species 362257 0 1 1290 2063 genus 0 5 7188 Kitasatospora 1 92 68173 species 1212 0 1 Kitasatospora albolonga 1 0 1862 species 2066 Kitasatospora setae no rank 2633591 2326 1 0 Kitasatospora sp. MMS16-BH015 0 1 2326 2018025 species 1 0 1696 species 1894 Kitasatospora aureofaciens 9 4 0 1475 order 622452 1 Kineosporiales 15 family 83778 0 1466 3 Kineosporiaceae 1 genus 33981 2 0 1451 Kineococcus 1 16 Kineococcus radiotolerans 131568 species 1 0 1435 0 143 93236 order 85006 1 Micrococcales 827 88 Promicromonosporaceae 1 85017 family 0 4954 9 Cellulosimicrobium 1 genus 157920 3 0 1714 59 843 1 0 no rank 2624466 species 1980001 1 0 843 Cellulosimicrobium sp. TH-20 1 0 812 species 1710 Cellulosimicrobium cellulans Xylanimonas 1 genus 186188 1253 0 2 1 Xylanimonas cellulosilytica 0 1252 1 186189 species 254250 genus 3 0 1899 Isoptericola 1 29 Isoptericola variabilis 139208 species 1 0 919 species 372663 0 1 951 Isoptericola dokdonensis 1040 0 3 145360 family 1 Sanguibacteraceae 18 28 Sanguibacter 1 genus 60919 1022 0 2 1 0 994 60920 species Sanguibacter keddieii 1 0 139 577468 no rank 139 1 0 genus 2038 species 2039 0 139 1 Tropheryma whipplei 0 638 2 85018 family 1 Dermatophilaceae 31 1862 genus 607 1 0 1863 species 0 607 1 Dermatophilus congolensis 14 0 4121 6 85016 family 1 Cellulomonadaceae 84 1 Cellulomonas 4107 0 5 genus 1707 2620175 no rank 1 0 717 species 2003551 0 717 1 Cellulomonas sp. PSBB021 Cellulomonas fimi 1353 0 1 species 1708 Cellulomonas gilvus 1 0 654 11 species 1711 species 1299 0 1 Cellulomonas flavigena 1 Dermacoccaceae 7 0 2411 145357 family 38 1 Luteipulveratus 0 679 2 genus 745364 2 Luteipulveratus mongoliensis 0 1 677 571913 species 0 836 2 genus 57499 1 Kytococcus 38 1 0 798 1276 species Kytococcus sedentarius 5 genus 57495 858 0 2 Dermacoccus 1 1 0 853 species 1274 Dermacoccus nishinomiyaensis Dermabacteraceae 1 85020 family 0 10 6555 48 1 620 0 472568 genus Devriesea agamarum 0 620 1 472569 species 0 685 2 36739 genus 1 Dermabacter 14 671 0 1 1630135 species Dermabacter vaginalis 1 Brachybacterium 6 0 5202 43668 genus 143 0 1 934 species 2017485 Brachybacterium sp. VR2415 0 1036 1 43669 species Brachybacterium faecium no rank 2623841 0 878 1 Brachybacterium sp. P6-10-X1 0 1 878 1903186 species species 1331682 1161 0 1 Brachybacterium ginsengisoli 0 1050 1 species 2017484 Brachybacterium sp. VM2412 Microbacteriaceae 1 85023 family 0 47 29916 348 745 0 2 no rank 1655488 1655489 clade 745 2 0 genus 529883 745 2 0 Rhodoluna lacicola species 529884 0 1 453 Candidatus Rhodoluna planktonica 0 1 292 535712 species 3 2 0 1904 genus 110932 1 Leifsonia Leifsonia xyli 0 1 1901 1575 species 1 522 0 2 genus 337004 1 Microcella Microcella alkaliphila 279828 species 0 1 521 0 4 2702 2034 genus 1 Curtobacterium 29 2 1693 0 no rank 257496 species 1905847 0 1 686 Curtobacterium sp. BH-2-1-1 Curtobacterium sp. MR_MD2014 0 1007 1 species 1561023 0 980 1 69373 species Curtobacterium pusillum 200 1 0 1434032 genus Pontimonas salivibrio 200 0 1 1159327 species Rathayibacter 1 33886 genus 3 0 1060 7 species 145458 0 420 1 Rathayibacter toxicus 33888 species 0 1 633 Rathayibacter tritici 1 Agromyces 0 2 980 genus 33877 2 0 978 1 species 453304 Agromyces aureus 2 0 992 447237 genus 1 Frondihabitans 1 2626248 no rank 1 991 0 1 0 991 1795630 species Frondihabitans sp. PAMC 28766 14 0 11550 33882 genus 1 Microbacterium 156 Microbacterium paludicola 300019 species 0 1 920 0 1 784 species 2033 Microbacterium testaceum Microbacterium aurum 0 1 1089 36805 species no rank 2609290 0 8 7214 1073 0 1 2103230 species Microbacterium sp. str. 'China' Microbacterium sp. PAMC 28756 1795053 species 0 945 1 1938334 species 779 0 1 Microbacterium sp. TPU 3598 1906742 species 1 0 792 Microbacterium sp. BH-3-3-3 1714373 species 1 0 1206 Microbacterium sp. No. 7 Microbacterium sp. 1.5R 833 0 1 species 1916917 1 0 835 1696072 species Microbacterium sp. CGR1 0 1 751 species 367477 Microbacterium sp. XT11 species 162426 0 1 843 Microbacterium hominis 544 0 1 84292 species Microbacterium chocolatum Cryobacterium 1 genus 69578 0 2284 3 25 670052 species 1 0 1099 Cryobacterium arcticum no rank 2649013 1160 1 0 1 0 1160 1978566 species Cryobacterium sp. LW097 353 1 0 genus 1705353 Aurantimicrobium minutum 0 1 353 species 708131 7 Microterricola 1 518733 genus 2 0 1269 Microterricola viridarii 0 1262 1 species 412690 1 Cnuibacter 2 0 951 genus 1759331 1 1619308 species 0 1 950 Cnuibacter physcomitrellae 246 0 6 4056 genus 1573 1 Clavibacter 845 1 Clavibacter michiganensis 3810 0 5 species 28447 Clavibacter capsici 1874630 subspecies 0 1 819 Clavibacter insidiosus 33014 subspecies 0 1 748 Clavibacter sepedonicus 0 1 690 subspecies 31964 31963 subspecies 708 0 1 Clavibacter nebraskensis 14 1 Brevibacteriaceae 0 1567 3 85019 family 1 Brevibacterium 2 0 1553 genus 1696 15 1 0 1538 species 1703 Brevibacterium linens 1 Jonesiaceae 0 302 3 family 85022 3 0 299 2 43673 genus 1 Jonesia 3 43674 species 0 296 1 Jonesia denitrificans 1 Micrococcaceae 0 39 35334 family 1268 2382 11 1 Sinomonas 0 2 1239 genus 596707 Sinomonas atrocyanea 0 1 1228 species 37927 11 1 Micrococcus 0 2 953 1269 genus Micrococcus luteus 1 0 942 1270 species 5 Paenarthrobacter 1 1742992 genus 0 2 875 Paenarthrobacter aurescens 43663 species 1 0 870 13 Rothia 1 32207 genus 0 3 3277 Rothia dentocariosa species 2047 1 0 585 Rothia mucilaginosa 0 1 2679 43675 species 42 3121 0 4 genus 1742993 1 Pseudarthrobacter 85085 species 1 0 939 Pseudarthrobacter chlorophenolicus Pseudarthrobacter phenanthrenivorans 0 1060 1 species 361575 0 1 1080 121292 species Pseudarthrobacter sulfonivorans Arthrobacter 1 1663 genus 15646 0 15 286 1 0 2029 species 656366 Arthrobacter alpinus 235627 no rank 12 11953 0 1652545 species 1 0 1018 Arthrobacter sp. YC-RL1 Arthrobacter sp. PGP41 813 0 1 species 2079227 Arthrobacter sp. U41 species 1849032 0 1 1266 1269 0 1 1690248 species Arthrobacter sp. LS16 species 290399 0 1222 1 Arthrobacter sp. FB24 Arthrobacter sp. PAMC 25486 1 0 941 species 1494608 species 1704044 1 0 1179 Arthrobacter sp. ERGS1:01 Arthrobacter sp. Rue61a 1118963 species 798 0 1 species 1771959 1 0 566 Arthrobacter sp. ATCC 21022 Arthrobacter sp. QXT-31 0 946 1 species 1357915 Arthrobacter sp. ZXY-2 792 0 1 species 1806905 species 2020486 0 1 1143 Arthrobacter sp. YN 37928 species 1 0 1378 Arthrobacter crystallopoietes Neomicrococcus 1 1868332 genus 0 2 2339 15 Neomicrococcus aestuarii 0 2324 1 556325 species 363 1 0 1645 genus species 1646 363 0 1 Renibacterium salmoninarum 46 4 0 3261 57493 genus 1 Kocuria Kocuria flava 0 1 1054 446860 species Kocuria rhizophila 72000 species 0 1 1130 Kocuria palustris species 71999 0 1031 1 1742989 genus 0 2 1473 Glutamicibacter 1 3 Glutamicibacter arilaitensis 1470 0 1 species 256701 405 0 1 2078575 genus 405 0 1 1618207 species Arthrobacter sp. IHBB 11108 56 4581 0 9 85021 family 1 Intrasporangiaceae 6 Janibacter 1 53457 genus 2 0 659 Janibacter indicus 857417 species 0 653 1 5 53357 genus 0 865 2 Intrasporangium 1 860 0 1 species 53358 Intrasporangium calvum 267408 genus 0 2 1440 Arsenicicoccus 1 34 1406 0 1 2663846 no rank Arsenicicoccus sp. oral taxon 190 1658671 species 1 0 1406 1 Serinicoccus 0 2 1561 genus 265976 23 Serinicoccus sp. JLT9 species 1758689 0 1538 1 1 Beutenbergiaceae 0 851 3 family 125316 3 29 Beutenbergia 1 genus 84756 0 2 848 Beutenbergia cavernae species 84757 0 1 819 51 2037 order 0 23240 19 Actinomycetales 1 5602 0 18 23189 2049 family 1 Actinomycetaceae 0 3743 2 genus 2050 1 Mobiluncus 222 0 3521 1 species 2051 Mobiluncus curtisii 0 1 950 2529408 genus species 52773 0 950 1 Actinomyces meyeri 1069494 genus 0 2578 2 Trueperella 1 3 Trueperella pyogenes 1 0 2575 1661 species 1654 genus 0 9 9008 Actinomyces 1 201 Actinomyces gaoshouyii 1960083 species 1131 0 1 Actinomyces pacaensis species 1852377 0 807 1 Actinomyces sp. VUL4_3 1912795 species 1 0 428 Actinomyces radicidentis 0 1301 1 species 111015 species 544580 0 1 1149 Actinomyces oris 2609248 no rank 0 3991 3 1 0 1256 species 712122 Actinomyces sp. oral taxon 414 0 1337 1 species 2081702 Actinomyces sp. oral taxon 897 Actinomyces sp. Chiba101 species 1851395 0 1398 1 genus 1653174 0 615 2 Actinotignum 1 6 Actinotignum schaalii 59505 species 1 0 609 genus 28263 693 1 0 0 693 1 species 28264 Arcanobacterium haemolyticum 131 1 Propionibacteriales 34 0 24462 order 85009 262 Propionibacteriaceae 1 family 31957 16753 0 20 14 genus 1912216 0 2724 4 Cutibacterium 1 33010 species 1 0 1170 Cutibacterium avidum Cutibacterium granulosum 1 0 724 33011 species Cutibacterium acnes species 1747 816 0 1 1138 0 2 29404 genus 1 Microlunatus 28 Microlunatus phosphovorus 0 1110 1 species 29405 2801844 genus 0 1 945 Pseudopropionibacterium propionicum 0 1 945 1750 species genus 72763 0 5 4466 Tessaracoccus 1 51 0 1 1295 species 1332264 Tessaracoccus aquimaris 1185 1 0 2635419 no rank 0 1 1185 1909732 species Tessaracoccus sp. T2.5-30 0 869 1 399497 species Tessaracoccus flavescens Tessaracoccus flavus 1066 0 1 1610493 species 5 1 Acidipropionibacterium 0 1449 2 1912215 genus Acidipropionibacterium acidipropionici 1 0 1444 species 1748 92 1 Propionibacterium 0 3409 3 genus 1743 332 0 1 2608905 no rank Propionibacterium sp. oral taxon 193 671223 species 332 0 1 1 0 2985 1744 species Propionibacterium freudenreichii Propionimicrobium 1 203133 genus 2360 0 2 9 2351 1 0 no rank 2633994 1871034 species 2351 0 1 Propionimicrobium sp. Marseille-P3275 176 Nocardioidaceae 1 85015 family 13 0 7578 genus 182639 0 2 1408 Kribbella 1 34 182640 species 1 0 1374 Kribbella flavida 1 Nocardioides 3025 0 4 1839 genus 118 2615069 no rank 1 983 0 Nocardioides sp. JS614 0 983 1 species 196162 Nocardioides sp. 78 species 2045452 0 922 1 species 450734 1002 0 1 Nocardioides dokdonensis Aeromicrobium 1 genus 2040 0 900 2 9 Aeromicrobium erythreum 0 1 891 2041 species 5 0 1076 2 2044 genus 1 Pimelobacter 1071 0 1 2045 species Pimelobacter simplex 20 993 0 2 116071 genus 1 Micropruina Micropruina glycogenica 0 973 1 species 75385 348 3 0 1643683 order 7 1 Acidothermaceae 0 348 3 family 85032 28048 genus 341 0 2 Acidothermus 1 5 Acidothermus cellulolyticus 1 0 336 28049 species 24 1643682 order 0 4533 8 Geodermatophilales 1 81 Geodermatophilaceae 1 family 85030 4509 0 7 88138 genus 0 2 1721 Modestobacter 1 8 477641 species 1713 0 1 Modestobacter marinus 1251 0 2 genus 38501 1 Blastococcus 6 Blastococcus saxobsidens species 138336 0 1245 1 1 Geodermatophilus 1456 0 2 genus 1860 46 1861 species 1 0 1410 Geodermatophilus obscurus 84 order 85010 43141 0 42 Pseudonocardiales 1 Pseudonocardiaceae 1 family 2070 0 43057 41 669 19 1 Alloactinosynnema 1107 0 2 674734 genus 2636053 no rank 1 1088 0 1088 0 1 1653480 species Alloactinosynnema sp. L-07 1 Saccharothrix 0 2 1769 2071 genus 3 Saccharothrix espanaensis 0 1766 1 species 103731 107 1 Actinosynnema 0 4567 3 40566 genus 2087 0 1 species 40567 Actinosynnema mirum Actinosynnema pretiosum 42197 species 2373 0 1 1851 genus 0 1070 2 Saccharomonospora 1 1 Saccharomonospora viridis 1852 species 1 0 1069 7 0 10197 1813 genus 1 Amycolatopsis 184 1 0 1341 species 208439 Amycolatopsis japonica Amycolatopsis orientalis species 31958 1 0 2416 Amycolatopsis mediterranei species 33910 0 1 2190 Amycolatopsis methanolica 0 1 1310 species 1814 no rank 2618356 2 0 2756 Amycolatopsis sp. AA4 1 0 1505 species 1896961 Amycolatopsis sp. BJA-103 1911175 species 1 0 1251 16 genus 43356 2372 0 2 Kutzneria 1 43357 species 2356 0 1 Kutzneria albida genus 1847 0 9175 8 Pseudonocardia 1 126 1283 0 1 240495 species Pseudonocardia dioxanivorans 7766 6 0 no rank 2619320 Pseudonocardia sp. HH130630-07 1690815 species 0 1 1033 1641402 species 1 0 1208 Pseudonocardia sp. HH130629-09 species 1688404 0 1576 1 Pseudonocardia sp. EC080610-09 Pseudonocardia sp. AL041005-10 1144 0 1 445576 species Pseudonocardia sp. EC080619-01 species 1096856 1536 0 1 Pseudonocardia sp. EC080625-04 1096868 species 1269 0 1 16 Saccharopolyspora 1 genus 1835 0 2032 2 2016 0 1 species 1836 Saccharopolyspora erythraea 4 2029 genus 0 1484 2 Kibdelosporangium 1 Kibdelosporangium phytohabitans 1480 0 1 860235 species 23 Lentzea 1 165301 genus 2313 0 2 Lentzea guizhouensis 1586287 species 2290 0 1 147 1 Actinoalloteichus 5332 0 6 65496 genus 1470176 species 1350 0 1 Actinoalloteichus hoggarensis 1612552 species 1018 0 1 Actinoalloteichus sp. ADI127-7 Actinoalloteichus hymeniacidonis species 340345 0 821 1 1996 2 0 2644606 no rank species 2072503 933 0 1 Actinoalloteichus sp. AHMU CJ021 Actinoalloteichus sp. GBA129-24 1612551 species 1063 0 1 8 0 2 970 142577 genus 1 Prauserella Prauserella marina species 530584 0 1 962 2 Glycomycetales 1 85014 order 1864 0 4 0 3 1862 85034 family 1 Glycomycetaceae 54 0 1808 2 genus 283810 1 Stackebrandtia 31 Stackebrandtia nassauensis 283811 species 1777 0 1 55 16 0 12425 85012 order 1 Streptosporangiales 69 0 5627 5 2004 family 1 Streptosporangiaceae Nonomuraea 1 genus 83681 2 0 2887 47 no rank 2593643 0 2840 1 0 2840 1 species 1909395 Nonomuraea sp. ATCC 55076 2671 0 2 genus 2000 1 Streptosporangium 27 Streptosporangium roseum 2001 species 0 1 2644 14 1804 0 3 family 2012 1 Thermomonosporaceae 1 Thermomonospora 2 0 1790 2019 genus 38 0 1 1752 2020 species Thermomonospora curvata 78 Nocardiopsaceae 1 83676 family 0 7 4939 630 0 2 83677 genus 1 Thermobifida 6 Thermobifida fusca 624 0 1 2021 species 86 1 Nocardiopsis 0 4 4231 2013 genus Nocardiopsis alba 0 1304 1 53437 species Nocardiopsis dassonvillei 1604 0 1 2014 species 1 0 1237 species 280236 Nocardiopsis gilva 58 1 Micromonosporales 0 19993 20 85008 order Micromonosporaceae 1 family 28056 0 19935 19 350 0 4488 4 genus 1873 1 Micromonospora 56 1003110 species 1 0 1116 Verrucosispora maris 0 1 1723 no rank 2617518 1 0 1723 species 648999 Micromonospora sp. L5 species 47850 1593 0 1 Micromonospora aurantiaca Verrucosispora 36 0 1 genus 84593 50 673534 genus 4 0 4157 Plantactinospora 1 4107 3 0 2631981 no rank Plantactinospora sp. BC1 0 1 1385 species 2108470 0 1430 1 species 2024580 Plantactinospora sp. KBS50 species 2071627 1292 0 1 Plantactinospora sp. BB1 173 1 Actinoplanes 8883 0 6 1865 genus 196914 species 1 0 1745 Actinoplanes friuliensis 5044 3 0 2626549 no rank Actinoplanes sp. N902-109 1 0 2298 649831 species Actinoplanes sp. SE50 2033844 species 0 1373 1 species 134676 1373 0 1 Actinoplanes sp. SE50/110 Actinoplanes missouriensis 1866 species 1921 0 1 1 Salinispora 3 0 2021 genus 168694 6 species 168697 1147 0 1 Salinispora arenicola Salinispora tropica 0 1 868 species 168695 Thermoleophilia 1 1497346 class 5 0 1681 17 63 order 588673 0 4 1664 Solirubrobacterales 1 15 320583 family 0 1601 3 Conexibacteraceae 1 37 1 Conexibacter 2 0 1586 191494 genus 1549 0 1 species 191495 Conexibacter woesei 481 0 104149 32 84998 class 1 Coriobacteriia 322 27956 0 14 order 84999 1 Coriobacteriales 161 family 1643824 14200 0 7 Atopobiaceae 1 Atopobium genus 1380 0 1 5 1 Olsenella 0 12504 4 genus 133925 89 2459 1 0 2638792 no rank 712411 species 1 0 2459 Olsenella sp. oral taxon 807 Olsenella uli 133926 species 0 1 4118 Olsenella sp. Marseille-P2300 0 1 5838 1805478 species genus 2767353 1 1530 0 species 1382 0 1 1530 Atopobium parvulum 13434 0 6 84107 family 1 Coriobacteriaceae 1105 5 Coriobacterium 1 genus 33870 0 2 1725 0 1720 1 33871 species Coriobacterium glomerans 3985 1 0 84113 no rank 0 3985 1 1531429 species Coriobacteriaceae bacterium 68-1-3 19 Collinsella 1 genus 102106 0 6619 2 6600 0 1 species 74426 Collinsella aerofaciens 1006 order 1643822 0 75712 17 Eggerthellales 1 11183 1 Eggerthellaceae 16 0 74706 family 1643826 447020 genus 0 5396 2 Adlercreutzia 1 1 446660 species 1 0 5395 Adlercreutzia equolifaciens genus 644652 0 12968 3 Gordonibacter 1 39 Gordonibacter massiliensis 0 6107 1 1841863 species Gordonibacter urolithinfaciens 0 6822 1 species 1335613 282 Eggerthella 1 84111 genus 0 33725 3 no rank 2648737 0 1 6027 Eggerthella sp. YY7918 0 1 6027 502558 species Eggerthella lenta species 84112 0 27416 1 1981050 genus 0 1 2968 0 1 2968 1944646 species Phoenicibacter massiliensis 1 Cryptobacterium 1 genus 84162 763 0 2 84163 species 0 762 1 Cryptobacterium curtum 2509 0 2 79603 genus 1 Denitrobacterium 5 0 1 2504 79604 species Denitrobacterium detoxificans 16 genus 84108 0 2 5194 Slackia 1 5178 0 1 84110 species Slackia heliotrinireducens no rank 1752188 4 957 0 0 1 184 species 1848756 Actinobacteria bacterium IMCC26103 species 1848255 1 0 315 Actinobacteria bacterium IMCC25003 1848755 species 193 0 1 Actinobacteria bacterium IMCC26077 species 1848754 0 1 265 Actinobacteria bacterium IMCC19121 16 1 Rubrobacteria 0 1934 6 class 84995 64 Rubrobacterales 1 84996 order 1918 0 5 3 4 0 1854 family 84997 1 Rubrobacteraceae 42255 genus 1851 0 3 Rubrobacter 1 66 0 1 495 42256 species Rubrobacter radiotolerans 0 1 1290 49319 species Rubrobacter xylanophilus 1297 phylum 0 35 30014 261 class 188787 0 30014 35 Deinococci 1 118964 order 17951 0 15 Deinococcales 1 200 147 14 0 17751 family 183710 1 Deinococcaceae 297 1 Deinococcus 17604 0 13 genus 1298 Deinococcus radiodurans species 1299 0 1 1335 Deinococcus actinosclerus 1 0 1616 1768108 species 1182571 species 1 0 1745 Deinococcus swuensis 0 1 1023 species 1182568 Deinococcus puniceus Deinococcus gobiensis 0 1963 1 502394 species 0 1 952 species 310783 Deinococcus deserti Deinococcus proteolyticus species 55148 0 1784 1 Deinococcus maricopensis 1479 0 1 309887 species 2623546 no rank 1239 0 1 Deinococcus sp. NW-56 1239 0 1 2080419 species 0 1462 1 species 68909 Deinococcus geothermalis Deinococcus soli Cha et al. 2016 species 1309411 0 1 1943 species 432329 1 0 766 Deinococcus peraridilitoris 68933 order 0 16 10768 Thermales 1 144 1 Thermaceae 0 10624 15 188786 family 81 1 Thermus 0 8 5920 270 genus 182 0 1 600 species 456163 Thermus parvatiensis Thermus scotoductus 0 1 535 species 37636 0 440 1 56956 species Thermus brockianus 775 0 1 56957 species Thermus oshimai 274 species 0 1618 1 Thermus thermophilus no rank 2619321 0 1 710 species 1111069 0 710 1 Thermus sp. CCB_US3_UF1 0 1 1060 species 271 Thermus aquaticus 0 876 1 genus 186191 species 186192 0 876 1 Marinithermus hydrothermalis 13 208447 genus 2 0 1650 Oceanithermus 1 Oceanithermus profundus 187137 species 0 1637 1 29 1 Meiothermus 2097 0 3 65551 genus Meiothermus ruber 0 1191 1 species 277 Meiothermus silvanus species 52022 0 877 1 0 1034 3 2762275 order 9 332247 family 0 1034 3 Trueperaceae 1 0 1025 2 genus 332248 1 Truepera 10 Truepera radiovictrix 0 1 1015 332249 species 5 0 17044 47 phylum 200795 1 Chloroflexi 56 5 0 2307 class 1382928 1 Ardenticatenia 1382929 order 4 0 2251 Ardenticatenales 1 34 0 2217 3 family 1382930 1 Ardenticatenaceae 14 6 1988031 genus 2 0 2203 Candidatus Promineofilum 1 Candidatus Promineofilum breve 1 0 2197 1806508 species 6 1 Caldilineae 0 5 1105 class 475962 1 Caldilineales 1099 0 4 order 475963 63 family 475964 0 3 1036 Caldilineaceae 1 10 1 1 Caldilinea 1026 0 2 genus 233191 1025 0 1 species 133453 Caldilinea aerophila 10 Dehalococcoidia 1 301297 class 0 4315 9 7 1 Dehalococcoidales 2505 0 5 order 1202465 1 1202464 family 0 2498 4 Dehalococcoidaceae 1 7 61434 genus 3 0 2497 Dehalococcoides 1 Dehalococcoides mccartyi 0 1 1922 species 61435 568 1 0 no rank 237581 Dehalococcoides sp. UCH007 0 1 568 1522671 species 8 1 Dehalogenimonas 3 0 1800 670486 genus 1 0 902 species 552810 Dehalogenimonas lykanthroporepellens 0 1 890 species 1839801 Dehalogenimonas formicexedens class 189775 0 9 1573 Thermomicrobia 1 10 Thermomicrobiales 1 189776 order 4 0 483 7 Thermomicrobiaceae 1 family 189777 476 0 3 1 499 genus 2 0 475 Thermomicrobium 1 1 0 1 474 500 species Thermomicrobium roseum 85000 subclass 4 1080 0 85001 order 0 4 1080 Sphaerobacterales 1 24 3 1056 0 suborder 255728 11 Sphaerobacteraceae 1 family 85002 1056 0 3 16 1 Sphaerobacter 1045 0 2 2056 genus Sphaerobacter thermophilus 1029 0 1 species 2057 Chloroflexia 1 32061 class 0 11 4449 26 1 Chloroflexales 0 10 4423 order 32064 72 2245 5 0 suborder 1508594 Chloroflexaceae 1 1106 family 2245 0 5 7 5 1107 genus 0 2238 4 Chloroflexus 1 827 2 0 1650 species 1108 1 Chloroflexus aurantiacus Chloroflexus sp. Y-400-fl 823 0 1 strain 480224 152260 species 0 583 1 Chloroflexus aggregans 1508595 suborder 2106 4 0 23 Roseiflexaceae 1 1508635 family 2106 0 4 3 0 2083 120961 genus 1 Roseiflexus 9 0 1 1070 no rank 2609473 0 1070 1 species 357808 Roseiflexus sp. RS-1 species 120962 0 1004 1 Roseiflexus castenholzii 0 7 3290 292625 class 1 Anaerolineae 4 8 3286 0 6 order 292629 1 Anaerolineales 30 0 5 3278 292628 family 1 Anaerolineaceae genus 233189 943 1 0 Anaerolinea thermophila 1 0 943 167964 species 0 1 1477 no rank 1324991 1889813 species 0 1 1477 Anaerolineaceae bacterium oral taxon 439 3 1 Brevefilum 2 0 828 genus 2019482 Brevefilum fermentans 0 825 1 species 1986204 1859062 no rank 427 0 2 2 0 427 262406 genus 1 Thermobaculum 1 Thermobaculum terrenum 166501 species 426 0 1 444 0 730 19221451 phylum 1239 1 Firmicutes 0 226 17936208 186801 class 1 Clostridia 796 21840 0 17878208 167 186802 order 1 Clostridiales family 2304686 95075 12 0 genus 2304692 3 18171 0 1677857 species 0 4512 1 Herbivorax saccincola 0 6816 1 288965 species [Clostridium] clariflavum Ruminiclostridium thermocellum species 1515 0 6843 1 58 genus 236752 2 0 2627 Fastidiosipila 1 236753 species 2569 0 1 Fastidiosipila sanguinis 625 1508657 genus 0 2 9654 Ruminiclostridium 1 [Clostridium] cellulolyticum 9029 0 1 species 1521 2304693 genus 5116 1 0 [Clostridium] thermosuccinogenes 84032 species 0 1 5116 1 4223 0 genus 2304691 species 1510 1 0 4223 [Clostridium] stercorarium 15 1 Mageeibacillus 0 2 6036 genus 1637257 Mageeibacillus indolicus species 884684 1 0 6021 0 1 49248 no rank 2305130 Ruminiclostridium sp. KB18 1 0 49248 species 1834198 231 29 0 52538 186807 family 1 Peptococcaceae 278993 genus 0 1693 2 Thermincola 1 2 Thermincola potens 0 1 1691 863643 species 6 1 Syntrophobotulus 0 2 2595 genus 51196 Syntrophobotulus glycolicus 0 2589 1 species 51197 0 1 2122 genus 2282742 58138 species 2122 0 1 Desulfotomaculum acetoxidans 6 genus 471826 0 1358 2 Candidatus Desulforudis 1 species 471827 0 1352 1 Candidatus Desulforudis audaxviator 54 4 0 7282 genus 79206 1 Desulfosporosinus 1 0 2639 species 885581 Desulfosporosinus acidiphilus 1563 species 2506 0 1 Desulfosporosinus orientis Desulfosporosinus meridiei 0 2083 1 species 79209 9093 0 5 genus 1562 1 Desulfotomaculum 74 1564 species 1 0 2795 Desulfotomaculum ruminis species 1833852 1 0 2097 Desulfotomaculum ferrireducens Desulfotomaculum reducens 1 0 1958 59610 species Desulfotomaculum nigrificans 1565 species 2169 0 1 10431 0 4 56112 genus 1 Dehalobacter 90 2 7198 0 no rank 2635733 3515 0 1 species 1147129 Dehalobacter sp. DCA Dehalobacter sp. CF 1131462 species 0 3683 1 Dehalobacter restrictus 0 3143 1 species 55583 2282740 genus 1 2151 0 Desulfotomaculum gibsoniae 2151 0 1 102134 species 85 Desulfitobacterium 1 genus 36853 0 5 10880 142877 species 2234 0 1 Desulfitobacterium metallireducens Desulfitobacterium dichloroeliminans 0 1 2110 species 233055 0 4072 1 species 49338 Desulfitobacterium hafniense Desulfitobacterium dehalogenans 0 1 2379 species 36854 0 4702 2 genus 51514 1 Dehalobacterium 2 Dehalobacterium formicoaceticum 0 4700 1 51515 species 1515 1 Ruminococcaceae 0 13 3810681 541000 family no rank 552397 1 0 11103 [Clostridium] cellulosi 1 0 11103 species 29343 Flavonifractor 1 genus 946234 503397 0 2 111 292800 species 0 503286 1 Flavonifractor plautii 3 0 326520 genus 1263 1 Ruminococcus 382 1264 species 0 1 26231 Ruminococcus albus 0 1 299907 1160721 species Ruminococcus bicirculans 1 Ethanoligenens 0 17543 2 253238 genus 34 Ethanoligenens harbinense 0 1 17509 species 253239 Faecalibacterium 1 genus 216851 0 2930133 2 757 Faecalibacterium prausnitzii 0 2929376 1 species 853 no rank 2305133 1 0 20461 1572656 species 1 0 20461 Ruminococcaceae bacterium CPB6 Herbivorax 0 1 9 genus 1890281 1 5 0 2370 family 68298 1 Syntrophomonadaceae 1664 0 2 862 genus 1 Syntrophomonas 7 Syntrophomonas wolfei 1657 0 1 863 species 1 Syntrophothermus 2 0 705 129001 genus 10 86170 species 0 695 1 Syntrophothermus lipocalidus Heliobacteriaceae 1 31984 family 4852 0 3 29 2697 genus 2 0 4823 Heliobacterium 1 60 Heliobacterium modesticaldum 0 1 4763 35701 species 2589 1 Lachnospiraceae 13124414 0 27 186803 family genus 2719231 102686 1 0 0 102686 1 84030 species [Clostridium] saccharolyticum 186928 no rank 2 8757590 0 species 712991 1 0 20122 Lachnospiraceae bacterium oral taxon 500 [Eubacterium] rectale species 39491 1 0 8737468 genus 1663717 2 0 14563 Herbinix 1 9 Herbinix luporum species 1679721 0 1 14554 1506553 genus 4 0 277139 Lachnoclostridium 1 974 Lachnoclostridium phocaeense species 1871021 0 1 140903 2608895 no rank 114967 1 0 species 1834196 1 0 114967 Lachnoclostridium sp. YL32 species 66219 20295 0 1 Lachnoclostridium phytofermentans 264635 1 0 genus 2719313 [Clostridium] bolteae 208479 species 0 264635 1 1493284 1 0 28050 genus [Eubacterium] eligens species 39485 1 0 1493284 215 1 Blautia 0 378319 3 572511 genus 310125 0 1 species 1322 Blautia hansenii 1 0 67979 2648079 no rank Blautia sp. YL58 0 67979 1 1796616 species 2 0 23358 genus 2039240 1 Anaerotignum 9 Anaerotignum propionicum species 28446 0 1 23349 56 1 Roseburia 0 2 809785 841 genus Roseburia hominis 301301 species 0 1 809729 genus 830 3 0 41699 Butyrivibrio 1 72 species 43305 0 1 21305 Butyrivibrio proteoclasticus Butyrivibrio hungatei species 185008 20322 0 1 1 Anaerostipes 716467 0 2 207244 genus 251 Anaerostipes hadrus species 649756 716216 0 1 2569097 genus 232984 1 0 [Eubacterium] hallii 232984 0 1 species 39488 698776 genus 2 0 9316 Cellulosilyticum 1 9 Cellulosilyticum lentocellum 29360 species 0 9307 1 Christensenellaceae 1 990719 family 0 35552 3 157 322 1 Christensenella 0 2 35395 genus 990721 Christensenella massiliensis 1 0 35073 species 1805714 Eubacteriaceae 1 186806 family 0 5 30936 31 Eubacterium 1 genus 1730 2 0 27649 2737 1 0 24912 1736 species Eubacterium limosum 6 genus 33951 0 2 3256 Acetobacterium 1 Acetobacterium woodii 33952 species 0 3250 1 32833 0 3 family 216572 1 Oscillospiraceae 10 72 0 2 32823 459786 genus 1 Oscillibacter 351091 species 0 32751 1 Oscillibacter valericigenes 725 family 31979 41 0 213870 Clostridiaceae 1 1926 0 197730 30 genus 1485 1 Clostridium 0 5809 1 species 1216932 Clostridium bornimense 29341 species 0 3870 1 Clostridium argentinense Clostridium aceticum 0 2714 1 species 84022 1494 species 0 1 4279 Clostridium cochlearium 3214 0 1 1519 species Clostridium tyrobutyricum Clostridium tetani 4576 0 1 species 1513 Clostridium formicaceticum 0 1 2885 1497 species 0 1 6544 species 169679 Clostridium saccharobutylicum 39816 0 2 2614128 no rank Clostridium sp. SY8519 1042156 species 30293 0 1 Clostridium sp. BNL1100 species 755731 1 0 9523 0 6091 1 species 1534 Clostridium kluyveri Clostridium ljungdahlii species 1538 0 1 4665 Clostridium pasteurianum 1501 species 0 8318 1 Clostridium chauvoei species 46867 1 0 4990 Clostridium scatologenes species 1548 4725 0 1 1561 species 0 1 5832 Clostridium baratii species 238834 0 3606 1 Clostridium estertheticum Clostridium botulinum 0 1 21705 species 1491 Clostridium butyricum 8668 0 1 1492 species Clostridium cellulovorans 0 6518 1 1493 species Clostridium sporogenes 1 0 3497 1509 species Clostridium carboxidivorans 1 0 4097 species 217159 Clostridium acetobutylicum 1488 species 1 0 3430 1 0 6449 species 36745 Clostridium saccharoperbutylacetonicum species 394958 1 0 3627 Clostridium taeniosporum Clostridium perfringens 8824 0 1 1502 species Clostridium beijerinckii 8907 0 1 1520 species Clostridium autoethanogenum 0 4953 1 84023 species 3195 0 1 species 1542 Clostridium novyi Mordavella genus 1981033 1 0 400 38 Candidatus Arthromitus 1 49082 genus 4 0 3949 no rank 2638829 0 3 3911 Candidatus Arthromitus sp. SFB-rat-Yit 0 1496 1 1041504 species 1 0 1069 species 1508644 Candidatus Arthromitus sp. SFB-mouse-NL species 49118 1346 0 1 Candidatus Arthromitus sp. SFB-mouse 22 genus 114627 6578 0 3 Alkaliphilus 1 Alkaliphilus metalliredigens species 208226 1 0 3543 Alkaliphilus oremlandii 1 0 3013 461876 species 38 Geosporobacter 1 genus 390805 2 0 4488 1424294 species 0 4450 1 Geosporobacter ferrireducens no rank 538999 10 295763 0 539000 family 0 3 2392 Clostridiales Family XVII. Incertae Sedis 1 12 20 1 Thermaerobacter 0 2 2380 genus 73918 species 73919 0 2360 1 Thermaerobacter marianensis 2717089 genus 195110 0 1 1 0 195110 2086584 species Mordavella sp. Marseille-P3756 family 543314 0 4 9944 Clostridiales Family XIII. Incertae Sedis 1 16 143393 species 6093 0 1 [Eubacterium] sulci 29 1 Mogibacterium 0 3835 2 genus 86331 Mogibacterium diversum species 114527 0 1 3806 437 88317 0 2 1392389 genus 1 Intestinimonas Intestinimonas butyriciproducens 1 0 87880 1297617 species 1246 family 186804 0 154300 12 Peptostreptococcaceae 1 1 genus 1849828 2 0 4079 Paeniclostridium 1 species 1505 0 1 4078 Paeniclostridium sordellii genus 1481960 4596 0 2 Peptoclostridium 1 20 Peptoclostridium acidaminophilum 1731 species 4576 0 1 1 Filifactor 0 5206 2 44259 genus 15 Filifactor alocis species 143361 0 5191 1 0 1 2854 no rank 1411023 Peptostreptococcaceae bacterium oral taxon 929 2081703 species 0 1 2854 376 2 0 133335 genus 1870884 1 Clostridioides 1496 species 1 0 132959 Clostridioides difficile 6 1 Acetoanaerobium 0 2984 2 186831 genus Acetoanaerobium sticklandii 1511 species 0 1 2978 3 0 3184 543349 family 1 Symbiobacteriaceae 9 1 Symbiobacterium 0 3175 2 genus 2733 38 species 2734 3137 0 1 Symbiobacterium thermophilum 0 4 1436 order 485256 1 Natranaerobiales 4 4 Natranaerobiaceae 1 family 485255 0 1432 3 5 Natranaerobius 1 375928 genus 1428 0 2 0 1423 1 species 375929 Natranaerobius thermophilus 4 0 3740 2770089 order family 2770092 1942 2 0 Tepidanaerobacter 1 genus 499228 0 2 1942 3 Tepidanaerobacter acetatoxydans 0 1939 1 species 499229 0 1798 2 2770093 family Thermosediminibacter 1 genus 291988 1798 0 2 32 0 1 1766 species 291990 Thermosediminibacter oceani 1 Halanaerobiales 0 7765 12 order 53433 1 family 972 6 0 4692 Halanaerobiaceae 1 14 1 2 0 1292 genus 32636 1 Halothermothrix Halothermothrix orenii 1291 0 1 species 31909 45 Halanaerobium 1 2330 genus 0 3 3386 0 1 1893 656519 species Halanaerobium hydrogeniformans 1 0 1448 2331 species Halanaerobium praevalens 9 1 Halobacteroidaceae 0 5 3072 family 53434 0 2 1728 28186 genus 1 Acetohalobium 1 Acetohalobium arabaticum species 28187 0 1727 1 Halobacteroides 1 42417 genus 2 0 1335 2 1333 0 1 42422 species Halobacteroides halobius order 68295 0 44263 38 Thermoanaerobacterales 1 69 1 0 479 227387 family 1 479 0 227388 genus Thermodesulfobium narugense 184064 species 1 0 479 1 Thermoanaerobacteraceae 19469 0 20 family 186814 65 39 0 2 1212 140458 genus 1 Thermacetogenium 1 0 1173 85874 species Thermacetogenium phaeum no rank 42857 4 2875 0 12 Moorella 1 44260 genus 0 2 1641 1525 species 0 1 1629 Moorella thermoacetica 42837 genus 0 1234 2 Ammonifex 1 22 Ammonifex degensii 0 1 1212 42838 species 29 1 Caldanaerobacter 1745 0 2 genus 249529 Caldanaerobacter subterraneus 911092 species 1716 0 1 1 Carboxydothermus 0 1124 2 genus 129957 2 Carboxydothermus hydrogenoformans 0 1122 1 species 129958 556 12448 0 9 genus 1754 1 Thermoanaerobacter Thermoanaerobacter mathranii 583357 species 1546 0 1 0 1 1179 2325 species Thermoanaerobacter kivui Thermoanaerobacter wiegelii species 46354 1389 0 1 0 2 3347 2636821 no rank Thermoanaerobacter sp. X514 species 399726 1573 0 1 573062 species 1 0 1774 Thermoanaerobacter sp. X513 1 0 1421 29323 species Thermoanaerobacter brockii Thermoanaerobacter pseudethanolicus 496866 species 1 0 1421 Thermoanaerobacter italicus 1589 0 1 108150 species 0 13 22638 family 543371 1 Thermoanaerobacterales Family III. Incertae Sedis 87 396 1 Caldicellulosiruptor 9 0 16330 genus 44000 1642 0 1 species 717609 Caldicellulosiruptor obsidiansis 0 1940 1 413888 species Caldicellulosiruptor hydrothermalis Caldicellulosiruptor bescii species 31899 2070 0 1 52765 species 2095 0 1 Caldicellulosiruptor kristjanssonii species 44001 1 0 2332 Caldicellulosiruptor saccharolyticus Caldicellulosiruptor owensensis 0 1 1920 55205 species Caldicellulosiruptor kronotskyensis 0 1 1945 413889 species Caldicellulosiruptor lactoaceticus 1 0 1990 52766 species 1 Thermoanaerobacterium 0 3 6221 genus 28895 17 Thermoanaerobacterium xylanolyticum species 29329 2121 0 1 Thermoanaerobacterium thermosaccharolyticum 1 0 4083 1517 species 543372 family 0 3 1608 Thermoanaerobacterales Family IV. Incertae Sedis 1 5 4 Mahella 1 252965 genus 2 0 1603 species 252966 0 1599 1 Mahella australiensis Tissierellia 1 1737404 class 32380 0 19 58 1737407 no rank 0 1611 2 56 1 Ezakiella 2 0 1611 1582879 genus 1555 0 1 1852374 species Ezakiella massiliensis 1737405 order 30711 0 16 Tissierellales 1 981 3283 0 27607 12 1570339 family 1 Peptoniphilaceae 8 genus 1161127 6414 0 2 Murdochiella 1 1852373 species 0 1 6406 Murdochiella vaginalis 10 1 Anaerococcus 3953 0 3 genus 165779 Anaerococcus prevotii 33034 species 0 1 2120 species 1870984 0 1 1823 Anaerococcus mediterraneensis 18 Parvimonas 1 genus 543311 2991 0 2 0 2973 1 33033 species Parvimonas micra Peptoniphilus 1 genus 162289 1562 0 2 5 2637196 no rank 0 1 1557 Peptoniphilus sp. ING2-D1G 0 1 1557 1912856 species 0 9404 2 genus 150022 1 Finegoldia 11 Finegoldia magna species 1260 0 1 9393 2 Gottschalkiaceae 1 2042895 family 0 2123 3 3 2 0 2121 genus 1505664 1 Gottschalkia Gottschalkia acidurici species 1556 1 0 2118 451 Bacilli 1 class 91061 0 1014570 434 8860 1 Lactobacillales 579616 0 165 order 186826 126 0 19 61957 family 81852 1 Enterococcaceae 2048 0 3 2737 genus 1 Vagococcus 33 Vagococcus teuberi 519472 species 0 1087 1 Vagococcus penaei 0 1 928 633807 species 0 56387 12 1350 genus 1 Enterococcus 3015 species 53346 0 1634 1 Enterococcus mundtii 0 1 31403 species 1352 Enterococcus faecium Enterococcus thailandicus species 417368 0 1 1102 1093 0 1 37734 species Enterococcus casseliflavus Enterococcus hirae 0 1588 1 species 1354 Enterococcus wangshanyuanii 2215 0 1 species 2005703 2608891 no rank 3213 3 0 0 1 879 species 2057791 Enterococcus sp. CR-Ec1 Enterococcus sp. FDAARGOS_163 2060306 species 0 1 898 Enterococcus sp. FDAARGOS_375 0 1436 1 species 2060307 species 53345 1 0 1844 Enterococcus durans 1351 species 0 1 9280 Enterococcus faecalis 14 2 0 2240 genus 51668 1 Tetragenococcus 2226 0 1 51669 species Tetragenococcus halophilus 1 1156 0 genus 33969 Melissococcus plutonius species 33970 1 0 1156 0 58 79032 33958 family 1 Lactobacillaceae 502 0 713 1 genus 2767890 species 1193095 713 0 1 Lactobacillus hokkaidonensis 26 6 0 4595 genus 1253 1 Pediococcus 0 1 813 114090 species Pediococcus inopinatus 1 0 737 187452 species Pediococcus claussenii 0 920 1 species 51663 Pediococcus damnosus species group 1670797 997 0 1 1 0 997 species 1254 Pediococcus acidilactici species 1255 0 1102 1 Pediococcus pentosaceus 2767886 genus 0 3 2737 0 1 634 species 267363 Lactobacillus zymae 0 1354 1 1580 species Lactobacillus brevis Lactobacillus koreensis 637971 species 0 1 749 5095 3 0 2759736 genus 1582 species 2063 0 1 Lactobacillus casei 47715 species 0 1 1502 Lactobacillus rhamnosus Lactobacillus paracasei 0 1530 1 1597 species 2767881 genus 2 1334 0 species 53444 687 0 1 Lactobacillus lindneri Lactobacillus sanfranciscensis 1 0 647 1625 species 0 6 6448 genus 2767879 Lactobacillus heilongjiangensis 0 1 1133 1074467 species Lactobacillus farciminis 0 1 1184 1612 species 1 0 1062 1847728 species Lactobacillus allii Lactobacillus alimentarius 1 0 956 species 1602 Lactobacillus ginsenosidimutans species 1007676 0 1 1083 Lactobacillus crustorum 1030 0 1 species 392416 3 0 3115 genus 2767842 1589 species 0 1 750 Lactobacillus pentosus Lactobacillus paraplantarum 0 1 590 species 60520 Lactobacillus plantarum 0 1775 1 species 1590 750 1 0 genus 2767877 148814 species 750 0 1 Lactobacillus kunkeei 2936 0 2 genus 2767885 species 1599 1 0 1649 Lactobacillus sakei Lactobacillus curvatus 1 0 1287 species 28038 3 5988 0 genus 2742598 species 1598 3221 0 1 Lactobacillus reuteri species 97478 1 0 1616 Lactobacillus mucosae Lactobacillus fermentum species 1613 1 0 1151 1578 genus 0 16 22450 Lactobacillus 1 2329 species 1579 1 0 920 Lactobacillus acidophilus Lactobacillus helveticus 0 1 1613 1587 species 1604 species 1 0 2585 Lactobacillus amylovorus Lactobacillus jensenii 0 961 1 109790 species 1 0 2847 species 1584 Lactobacillus delbrueckii Lactobacillus gasseri species 1596 1 0 2135 Lactobacillus johnsonii species 33959 3066 0 1 no rank 2620435 2309 4 0 species 2108362 567 0 1 Lactobacillus sp. D1501 Lactobacillus sp. wkB8 1 0 623 species 1545702 Lactobacillus sp. CBA3605 511 0 1 2099788 species Lactobacillus sp. CBA3606 0 608 1 species 2099789 0 1 941 species 83683 Lactobacillus amylolyticus Lactobacillus kefiranofaciens 648 0 1 267818 species Lactobacillus gallinarum 755 0 1 species 52242 1600 species 1341 0 1 Lactobacillus acetotolerans 1 0 4984 genus 2767876 species 1603 1 0 4984 Lactobacillus amylophilus genus 2767889 0 2 1982 species 1610 0 1 1171 Lactobacillus coryniformis Lactobacillus backii species 375175 0 811 1 2767893 genus 3 0 2676 Lactobacillus parabuchneri species 152331 0 651 1 1 0 1097 1138822 species Lactobacillus curieae 1581 species 928 0 1 Lactobacillus buchneri 4 0 11558 2767887 genus Lactobacillus agilis 0 1 1128 species 1601 1623 species 1 0 5414 Lactobacillus ruminis species 1624 3848 0 1 Lactobacillus salivarius 0 1 1168 species 89059 Lactobacillus acidipiscis 1 1169 0 2767892 genus 240427 species 1 0 1169 Lactobacillus paracollinoides 19 1 Leuconostocaceae 0 11438 18 family 81850 25 1 Weissella 4384 0 6 46255 genus Weissella jogaejeotgali 0 931 1 species 1631871 165096 species 0 816 1 Weissella koreensis 493 0 1 759620 species Weissella ceti Weissella cibaria 0 1 1291 137591 species species 1249 1 0 828 Weissella paramesenteroides 33 6498 0 9 1243 genus 1 Leuconostoc Leuconostoc carnosum 553 0 1 1252 species 0 644 1 species 136609 Leuconostoc kimchii 0 1 637 species 1246 Leuconostoc lactis Leuconostoc gelidum 985 0 1 1244 species Leuconostoc citreum species 33964 1 0 779 1 720 0 no rank 2685106 979982 species 720 0 1 Leuconostoc sp. C2 Leuconostoc mesenteroides 0 1594 1 1245 species 553 0 1 species 255248 Leuconostoc garlicum 2 Oenococcus 1 46254 genus 0 2 537 species 1247 0 1 535 Oenococcus oeni 20 8978 0 8 186827 family 1 Aerococcaceae 0 8958 7 genus 1375 1 Aerococcus 195 Aerococcus christensenii 87541 species 2396 0 1 119206 species 0 1 1378 Aerococcus sanguinicola Aerococcus viridans 1 0 855 1377 species Aerococcus urinaehominis 1 0 1485 128944 species Aerococcus urinae 1 0 1463 1376 species 0 1186 1 51665 species Aerococcus urinaeequi Carnobacteriaceae 1 family 186828 0 9935 11 18 9 1 Marinilactibacillus 1993 0 2 genus 191769 1984 0 1 2632303 no rank 0 1984 1 1911586 species Marinilactibacillus sp. 15R 20 1 Jeotgalibaca 3 0 2451 genus 1470540 826 0 1 708126 species Jeotgalibaca dankookensis 1 1605 0 no rank 2621505 1605 0 1 species 1903686 Jeotgalibaca sp. PTS2502 Carnobacterium 1 2747 genus 0 5473 5 17 species 2751 0 1462 1 Carnobacterium maltaromaticum Carnobacterium inhibens 1 0 1339 147709 species 257487 no rank 2 0 2655 Carnobacterium sp. 17-4 208596 species 0 1131 1 1564681 species 0 1524 1 Carnobacterium sp. CP1 Streptococcaceae 1 family 1300 398490 0 49 5739 1301 genus 0 384405 43 Streptococcus 1 7090 Streptococcus pluranimalium 82348 species 1 0 1004 0 1 1604 1346 species Streptococcus iniae species 257758 0 1 1020 Streptococcus pseudopneumoniae Streptococcus acidominimus 0 6304 1 1326 species 7 19563 0 2608887 no rank 0 1 1210 species 1759399 Streptococcus sp. A12 Streptococcus sp. FDAARGOS_192 species 1839799 11218 0 1 Streptococcus sp. I-G2 1886 0 1 species 1156431 Streptococcus sp. NPS 308 1902136 species 0 788 1 Streptococcus sp. I-P16 1912 0 1 species 1156433 Streptococcus sp. oral taxon 431 0 1542 1 712633 species 1319 species 0 1 1007 Streptococcus sp. 'group B' Streptococcus marmotae 1825069 species 0 1 1311 1 0 1574 1309 species Streptococcus mutans Streptococcus macedonicus 0 998 1 species 59310 400065 species 1 0 870 Streptococcus merionis Streptococcus agalactiae 0 63278 1 species 1311 Streptococcus gordonii 1302 species 0 2935 1 species 1814128 834 0 1 Streptococcus halotolerans 1 0 4628 species 1308 Streptococcus thermophilus 1314 species 1 0 4968 Streptococcus pyogenes species 197614 1 0 6215 Streptococcus pasteurianus 7561 0 1 150055 species Streptococcus lutetiensis Streptococcus parasanguinis 0 1904 1 1318 species 3680 0 2 119603 species group 1334 species 974 0 1 Streptococcus dysgalactiae Streptococcus equi 0 2706 1 1336 species Streptococcus parauberis 0 1302 1 1348 species 1313 species 0 2816 1 Streptococcus pneumoniae Streptococcus equinus 0 6591 1 1335 species 28037 species 1 0 4364 Streptococcus mitis Streptococcus uberis species 1349 1 0 1467 species 1305 1 0 1251 Streptococcus sanguinis Streptococcus oralis 1303 species 3264 0 1 Streptococcus gallolyticus 2845 0 1 315405 species 1 0 42192 1304 species Streptococcus salivarius 102684 species 1 0 7579 Streptococcus infantarius 1680 0 1 species 1811193 Streptococcus pantholopis 1888195 species 1 0 879 Streptococcus himalayensis 0 43137 3 species group 671232 Streptococcus anginosus 0 29897 1 1328 species species 76860 0 10686 1 Streptococcus constellatus 2554 0 1 species 1338 Streptococcus intermedius Streptococcus cristatus 0 1 1432 45634 species 0 126265 1 1307 species Streptococcus suis 29 5 0 8346 genus 1357 1 Lactococcus Lactococcus lactis 1 0 4600 species 1358 species 1363 1817 0 1 Lactococcus garvieae 1366 species 0 1 917 Lactococcus raffinolactis Lactococcus piscium species 1364 983 0 1 no rank 263855 926 0 1 Lactobacillales bacterium 1 0 926 species 1993866 901 Bacillales 1 1385 order 434503 0 268 1 Planococcaceae 27 0 31152 family 186818 52 11 2581 0 2 genus 157226 1 Jeotgalibacillus Jeotgalibacillus malaysiensis species 1508404 0 1 2570 8 Kurthia 1 1649 genus 2 0 1893 1885 1 0 2644826 no rank species 1750719 0 1 1885 Kurthia sp. 11kri321 Planococcus 1 genus 1372 12 0 13697 170 Planococcus donghaensis 1 0 1199 414778 species 2 0 2145 no rank 2662419 species 1526927 1 0 737 Planococcus sp. PAMC 21323 Planococcus sp. MB-3u-03 species 2058136 1408 0 1 Planococcus plakortidis 1 0 1089 species 1038856 Planococcus antarcticus 1 0 1240 species 161360 1 0 875 species 1374 Planococcus kocurii species 1598147 0 1 860 Planococcus faecalis Planococcus halocryophilus species 1215089 0 1 1087 Planococcus rifietoensis species 200991 1 0 1560 Planococcus sp. L10.15 1302659 species 1 0 894 1 0 2578 species 192421 Planococcus maritimus 21 1 Solibacillus 3790 0 3 genus 648800 0 1497 1 2637870 no rank Solibacillus sp. R5-41 species 2048654 1 0 1497 76853 species 2272 0 1 Solibacillus silvestris 1569 genus 0 5 7646 Sporosarcina 1 57 2908 2 0 2647733 no rank Sporosarcina sp. P33 0 1459 1 1930764 species species 1930546 0 1449 1 Sporosarcina sp. P37 1571 species 1 0 3428 Sporosarcina ureae Sporosarcina psychrophila 1476 species 0 1 1253 3 0 1493 2 648802 genus 1 Rummeliibacillus Rummeliibacillus stabekisii 0 1490 1 species 241244 0 8238 9 no rank 539002 0 1647 2 539738 no rank 13 Gemella 1 1378 genus 2 0 1647 no rank 2624949 0 1 1634 Gemella sp. oral taxon 928 0 1634 1 species 1785995 539742 no rank 7 6591 0 33986 genus 0 6591 7 Exiguobacterium 1 190 0 1 724 species 132920 Exiguobacterium antarcticum no rank 2644629 4 0 4655 species 1224749 1329 0 1 Exiguobacterium sp. ZWU0009 1 0 1275 species 1849031 Exiguobacterium sp. U13-1 1399115 species 0 776 1 Exiguobacterium sp. MH3 Exiguobacterium sp. AT1b 0 1275 1 360911 species 1 0 1022 species 332410 Exiguobacterium sibiricum 6 1 Thermoactinomycetaceae 1508 0 4 family 186824 Laceyella 1 0 23 genus 292635 81 Novibacillus 1 1677050 genus 1479 0 2 Novibacillus thermophilus 0 1 1398 1471761 species 1 Sporolactobacillaceae 0 2 1843 family 186821 4 1 1839 0 no rank 663587 1 0 1839 85683 species [Bacillus] selenitireducens 1 Alicyclobacillaceae 0 9 9676 family 186823 38 56 Alicyclobacillus 1 29330 genus 2 0 2383 Alicyclobacillus acidocaldarius species 405212 0 2327 1 1129704 genus 3 0 2395 Kyrpidia 1 79 Kyrpidia sp. EA-1 2055160 species 0 1 1154 Kyrpidia tusciae species 33943 1 0 1162 47 1 Tumebacillus 0 4860 3 432330 genus species 1214604 1 0 2247 Tumebacillus algifaecis 2566 0 1 1903704 species Tumebacillus avium 0 113981 46 186822 family 1 Paenibacillaceae 312 16 0 2814 2 76632 genus 1 Thermobacillus Thermobacillus composti 0 2798 1 species 377615 0 3 3616 85151 no rank 1 Aneurinibacillus 3 0 3616 55079 genus 8 1612 1 0 no rank 2642329 Aneurinibacillus sp. XH2 species 1450761 0 1612 1 Aneurinibacillus soli 1500254 species 1996 0 1 28 55080 genus 0 4 7031 Brevibacillus 1 species 1393 0 2583 1 Brevibacillus brevis 1 0 1578 54913 species Brevibacillus formosus 1465 species 0 2842 1 Brevibacillus laterosporus Paenibacillus 1 genus 44249 100208 0 36 732 species 172713 1 0 2073 Paenibacillus kribbensis Paenibacillus swuensis species 1178515 1 0 1961 1 3798 0 2044880 species group Paenibacillus riograndensis species 483937 1 0 3798 Paenibacillus ihbetae 1870820 species 3085 0 1 Paenibacillus naphthalenovorans 1908 0 1 162209 species 1 0 3188 species 414771 Paenibacillus donghaensis Paenibacillus borealis 160799 species 0 3068 1 0 1 2163 species 1126833 Paenibacillus beijingensis Paenibacillus sabinae 1 0 2793 365617 species 1620 0 1 1763538 species Paenibacillus crassostreae 0 3232 1 1462996 species Paenibacillus yonginensis Paenibacillus durus species 44251 0 4297 1 Paenibacillus terrae 0 1766 1 species 159743 1982 0 1 528191 species Paenibacillus xylanexedens Paenibacillus peoriae species 59893 1 0 2008 Paenibacillus polymyxa 1 0 6458 species 1406 no rank 185978 36009 0 13 species 1536772 0 1 3360 Paenibacillus sp. FSL R7-0273 Paenibacillus sp. FSL R7-0331 3778 0 1 1536773 species Paenibacillus sp. FSL H7-0737 species 1536775 0 1712 1 1 0 2696 species 1870819 Paenibacillus sp. BIHB4019 0 4045 1 1536774 species Paenibacillus sp. FSL H7-0357 Paenibacillus sp. 32O-W species 1695218 1 0 2426 Paenibacillus sp. IHBB 10380 0 1 1171 species 1566358 Paenibacillus sp. lzh-N1 2069255 species 1 0 2146 Paenibacillus sp. JDR-2 species 324057 0 1 3233 1657 0 1 1536770 species Paenibacillus sp. FSL R5-0345 Paenibacillus sp. Y412MC10 481743 species 1 0 2483 Paenibacillus sp. FSL P4-0081 1 0 3717 1536769 species 3585 0 1 1536771 species Paenibacillus sp. FSL R5-0912 species 189426 0 1 1869 Paenibacillus odorifer Paenibacillus larvae 1464 species 0 2112 1 Paenibacillus bovis species 1616788 0 2774 1 Paenibacillus graminis 0 3460 1 species 189425 Paenibacillus mucilaginosus 4561 0 1 species 61624 0 1 3291 169760 species Paenibacillus stellifer 186817 family 0 203284 119 Bacillaceae 1 526 Parageobacillus 1 1906945 genus 2 0 1983 5 species 1426 1 0 1978 Parageobacillus thermoglucosidasius 0 3631 2 2675230 genus Bacillus kochii 1 0 1531 species 859143 665099 species 2100 0 1 Bacillus oceanisediminis 269 Virgibacillus 1 84406 genus 0 7 8943 1439 0 1 1473 species Virgibacillus pantothenticus Virgibacillus necropolis 163877 species 1 0 1763 Virgibacillus halodenitrificans 1487 0 1 species 1482 no rank 2620237 2 2679 0 1 0 1398 species 1911587 Virgibacillus sp. 6R 0 1 1281 403957 species Virgibacillus sp. SK37 species 2017483 1 0 1306 Virgibacillus phasianinus Lentibacillus 1 genus 175304 0 2 1668 2 Lentibacillus amyloliquefaciens 1666 0 1 species 1472767 genus 2675234 5 8425 0 Bacillus pseudofirmus 1834 0 1 species 79885 0 1688 1 199441 species Bacillus krulwichiae 300825 species 1 0 1283 Bacillus lehensis species 86665 1217 0 1 Bacillus halodurans 0 1 2403 79880 species Bacillus clausii 24 Anoxybacillus 1 150247 genus 0 7068 6 Anoxybacillus amylolyticus 1 0 1101 294699 species 33934 species 0 1940 1 Anoxybacillus flavithermus 0 1 1356 198467 species Anoxybacillus gonensis no rank 2639704 2 0 2647 0 1444 1 species 1490052 Anoxybacillus sp. B2M1 species 1490057 1203 0 1 Anoxybacillus sp. B7M1 Terribacillus 1 genus 459532 1537 0 2 1 Terribacillus aidingensis 0 1536 1 species 586416 Lysinibacillus 1 genus 400634 0 9651 5 70 0 1 1730 species 28031 Lysinibacillus fusiformis 1489 0 1 species 1145276 Lysinibacillus varians no rank 2636778 2034 0 1 Lysinibacillus sp. YS11 2072025 species 2034 0 1 species 1421 0 4328 1 Lysinibacillus sphaericus 1 Fictibacillus 3330 0 3 genus 1329200 38 Fictibacillus arsenicus 2028 0 1 species 255247 species 1221500 1 0 1264 Fictibacillus phosphorivorans 1475 0 1 29331 genus Amphibacillus xylanus species 1449 1 0 1475 1 1068 0 genus 351195 Salimicrobium jeotgali 1068 0 1 1230341 species 2 0 4125 genus 2675229 Bacillus simplex 1 0 2971 species 1478 Bacillus muralis 264697 species 1 0 1154 939 Geobacillus 1 129337 genus 14474 0 15 4 4292 0 1505648 species group Geobacillus thermocatenulatus 33938 species 0 739 1 species 1462 0 1 436 Geobacillus kaustophilus Geobacillus lituanicus 169283 species 0 1 967 0 2150 1 33941 species Geobacillus thermoleovorans Geobacillus stearothermophilus 1 0 1038 species 1422 788 0 1 1921421 species Geobacillus genomosp. 3 129338 species 1 0 1044 Geobacillus subterraneus 33940 species 0 1724 1 Geobacillus thermodenitrificans 0 4649 6 2642459 no rank Geobacillus sp. Y412MC61 321 0 1 544556 species 0 1 1778 species 581103 Geobacillus sp. Y4.1MC1 480 0 1 species 691437 Geobacillus sp. C56-T3 0 1 461 species 1233873 Geobacillus sp. GHH01 Geobacillus sp. WCH70 species 471223 1300 0 1 species 550542 0 1 309 Geobacillus sp. Y412MC52 1 1055323 genus 1585 0 2 Aeribacillus 1 33936 species 0 1584 1 Aeribacillus pallidus 0 2 2793 genus 182709 1 Oceanobacillus 7 Oceanobacillus iheyensis 182710 species 1 0 2786 1 Bacillus 58 0 127803 1386 genus 6342 0 1 1607 412384 species Bacillus aryabhattai 1 0 1398 species group 1792192 Bacillus altitudinis species 293387 0 1398 1 Bacillus pumilus species 1408 1 0 5580 Bacillus methanolicus 2011 0 1 species 1471 1398 species 4331 0 1 Bacillus coagulans 0 1 2921 species 135735 Bacillus endophyticus 1 0 1379 species 1178537 Bacillus xiamenensis no rank 185979 18323 19 0 Bacillus sp. SDLI1 0 1 933 1774743 species 1 0 1117 1837130 species Bacillus sp. FJAT-14266 Bacillus sp. LM 4-2 1628753 species 0 356 1 1 0 1422 756828 species Bacillus sp. WP8 Bacillus sp. 275 1 0 626 species 1941347 species 2049935 1 0 230 Bacillus sp. Lzh-5 Bacillus sp. 1s-1 0 1626 1 species 2026248 Bacillus sp. MD-5 species 2009331 0 681 1 Bacillus sp. JS species 1127744 1 0 619 0 1844 1 species 1565991 Bacillus sp. X1(2014) 1 0 1236 species 98228 Bacillus sp. OxB-1 0 271 1 species 1409 Bacillus sp. (in: Bacteria) 1827146 species 1 0 1633 Bacillus sp. IHB B 7164 Bacillus sp. SJ-10 563169 species 0 786 1 1856406 species 0 1 1626 Bacillus sp. H15-1 Bacillus sp. Pc3 species 1446792 0 712 1 species 1570330 0 226 1 Bacillus sp. BH072 666686 species 1 0 1827 Bacillus sp. 1NLA3E Bacillus sp. YP1 0 552 1 species 1574141 0 1 1639 species 324767 Bacillus infantis 1463 0 1 species 86664 Bacillus flexus 86661 species group 0 10 36756 1491 0 1 580165 species Bacillus cytotoxicus 1405 species 1 0 4984 Bacillus mycoides no rank 2750818 4239 0 3 Bacillus sp. FDAARGOS_235 1980 0 1 1839798 species Bacillus sp. ABP14 1069 0 1 1892404 species species 2053832 1190 0 1 Bacillus sp. HBCD-sjtu Bacillus thuringiensis 1 0 11147 species 1428 species 1396 11533 0 1 Bacillus cereus Bacillus toyonensis 1 0 1299 species 155322 Bacillus bombysepticus 658666 species 0 1108 1 species 1392 0 1 955 Bacillus anthracis 1 0 1486 33932 species Bacillus cohnii Bacillus smithii 0 1 1328 1479 species 2526 0 1 species 1664069 Bacillus glycinifermentans 1547283 species 0 1460 1 Bacillus weihaiensis Bacillus beveridgei species 632773 0 1425 1 Bacillus horikoshii 79883 species 0 1290 1 1413 species 1 0 1444 Bacillus cellulosilyticus species 561879 1 0 2850 Bacillus safensis species group 653685 9 25806 0 1 0 8895 1423 species Bacillus subtilis Bacillus vallismortis 72361 species 281 0 1 species subgroup 1938374 0 8209 3 Bacillus amyloliquefaciens 1390 species 3867 0 1 Bacillus siamensis 941 0 1 659243 species species 492670 0 1 3401 Bacillus velezensis species 1648923 1 0 1951 Bacillus paralicheniformis Bacillus licheniformis 0 1 2168 species 1402 Bacillus sonorensis 1 0 1900 species 119858 0 1 2402 species 1452 Bacillus atrophaeus Bacillus gibsonii 79881 species 0 223 1 Bacillus megaterium 0 1 4215 species 1404 Halobacillus 1 genus 45667 3199 0 3 2 Halobacillus mangrovi 1 0 1577 species 402384 1570 species 0 1620 1 Halobacillus halophilus 21 Listeriaceae 1 family 186820 0 11772 9 genus 2755 0 2 1140 Brochothrix 1 3 Brochothrix thermosphacta species 2756 1 0 1137 Listeria 1 genus 1637 10611 0 6 93 Listeria ivanovii 1638 species 0 1 2099 1643 species 1 0 1612 Listeria welshimeri Listeria monocytogenes 0 1 4260 species 1639 Listeria innocua 1642 species 0 1 1261 0 1286 1 1640 species Listeria seeligeri 90964 family 0 52148 42 Staphylococcaceae 1 2627 1 Staphylococcus 0 43770 33 1279 genus 1459 Staphylococcus condimenti 1529 0 1 70255 species Staphylococcus simiae 308354 species 1145 0 1 0 992 1 1290 species Staphylococcus hominis Staphylococcus xylosus 0 1772 1 1288 species 0 722 1 170573 species Staphylococcus pettenkoferi 1 0 2223 45972 species Staphylococcus pasteuri 0 1320 1 species 29388 Staphylococcus capitis Staphylococcus carnosus species 1281 0 1 1114 Staphylococcus stepanovicii 643214 species 0 1 1284 283734 species 0 2157 1 Staphylococcus pseudintermedius 1568 0 1 species 1282 Staphylococcus epidermidis Staphylococcus kloosii 29384 species 0 725 1 Staphylococcus argenteus 985002 species 0 1 1144 species 246432 1 0 1324 Staphylococcus equorum Staphylococcus sciuri 1280 0 1 1296 species Staphylococcus lugdunensis 0 1127 1 28035 species 1294 species 1 0 740 Staphylococcus muscae 0 1373 1 155085 species Staphylococcus lutrae 0 1 1172 1286 species Staphylococcus simulans Staphylococcus succinus species 61015 1175 0 1 46127 species 0 1090 1 Staphylococcus felis 1283 species 0 1 1122 Staphylococcus haemolyticus species 1292 0 1 1090 Staphylococcus warneri 1 957 0 91994 no rank 0 957 1 species 1715860 Staphylococcus sp. AntiMn-1 Staphylococcus hyicus 0 889 1 1284 species 1160 0 1 species 70258 Staphylococcus piscifermentans species 1295 0 1 1123 Staphylococcus schleiferi 832 0 1 species 985762 Staphylococcus agnetis Staphylococcus nepalensis 214473 species 948 0 1 927 0 1 29382 species Staphylococcus cohnii 29385 species 1 0 1120 Staphylococcus saprophyticus 5167 0 1 1280 species Staphylococcus aureus Macrococcus 1 69965 genus 3715 0 4 9 1 0 1402 69966 species Macrococcus caseolyticus 0 1300 1 2619255 no rank 0 1 1300 1898474 species Macrococcus sp. IME1552 0 1004 1 1855823 species Macrococcus canis 0 657 2 genus 2005363 1 Auricoccucs 4 species 1849491 653 0 1 Auricoccus indicus 9 0 1379 2 genus 45669 1 Salinicoccus 1 0 1370 407035 species Salinicoccus halodurans 18 5 0 1951 class 1676648 1 Limnochordia 1 Limnochordales 1933 0 4 1676649 order 28 3 0 1905 family 1676650 1 Limnochordaceae 25 1 Limnochorda 2 0 1880 genus 1676651 15 species 1555112 0 1 1865 Limnochorda pilosa 119 0 31 185833 class 909932 1 Negativicutes 0 31855 5 order 1843488 1 Acidaminococcales 57 146 1 Acidaminococcaceae 4 0 31798 909930 family 0 3 31652 genus 904 1 Acidaminococcus 49 Acidaminococcus fermentans 905 species 13298 0 1 187327 species 0 1 18305 Acidaminococcus intestini 1843489 order 0 11 116962 Veillonellales 1 2014 1 Veillonellaceae 114948 0 10 family 31977 2536 Veillonella 1 genus 29465 3 0 91645 29 Veillonella parvula species 29466 1 0 84719 Veillonella rodentium 248315 species 1 0 6897 167 906 genus 13191 0 2 Megasphaera 1 Megasphaera elsdenii 1 0 13024 species 907 genus 39948 2 0 4716 Dialister 1 3 39950 species 0 4713 1 Dialister pneumosintes genus 909928 2 0 2860 Negativicoccus 1 4 Negativicoccus massiliensis 0 2856 1 1702287 species 131 Selenomonadales 1 order 909929 0 14 36897 1 Selenomonadaceae 9 0 29258 1843491 family 165 260 genus 970 6 0 24348 Selenomonas 1 11304 3 0 no rank 2637378 Selenomonas sp. oral taxon 136 species 713030 1 0 4318 0 1 3147 1884263 species Selenomonas sp. oral taxon 920 Selenomonas sp. oral taxon 478 0 1 3839 712538 species Selenomonas ruminantium 0 7473 1 971 species 1 0 5311 species 69823 Selenomonas sputigena 1 2 0 4745 158846 genus 1 Megamonas Megamonas hypermegale 158847 species 0 4744 1 family 1843490 4 0 7508 Sporomusaceae 1 10 365348 genus 0 3 7498 Pelosinus 1 26 no rank 2629460 3379 1 0 Pelosinus sp. UFO1 484770 species 1 0 3379 Pelosinus fermentans 0 1 4093 365349 species 1562 1 0 no rank 84086 243899 species 1 0 1562 endosymbiont 'TC1' of Trimyema compressum 37 Erysipelotrichia 1 class 526524 0 11 45683 129 1 Erysipelotrichales 0 10 45646 order 526525 665 Erysipelotrichaceae 1 128827 family 45517 0 9 Faecalibaculum 1 genus 1729679 9734 0 2 8 Faecalibaculum rodentium 0 9726 1 species 1702221 Turicibacter 1 191303 genus 0 10111 2 151 no rank 2638206 1 9960 0 1 0 9960 1712675 species Turicibacter sp. H121 no rank 544447 20381 1 0 Erysipelotrichaceae bacterium I46 0 20381 1 species 1834207 105 Erysipelothrix 1 1647 genus 0 3 4626 0 1621 1 1514105 species Erysipelothrix larvae 0 1 2900 species 1648 Erysipelothrix rhusiopathiae no rank 33974 2 0 2820 Ndongobacter 1 1930845 genus 0 2 2820 15 1 0 2805 1871025 species Ndongobacter massiliensis name 1 0 0 273 64576 0 superkingdom 2157 clade 1783276 0 94 1 1 0 94 1801631 phylum 94 1 0 2490204 genus 1920749 species 1 0 94 Candidatus Micrarchaeota archaeon Mia14 3 1 Euryarchaeota 222 0 58955 28890 phylum 6 1 Thermococci 40 0 7062 class 183968 18 2258 order 7056 0 39 Thermococcales 1 24 1 Thermococcaceae 38 0 7038 2259 family 51 Thermococcus 1 2263 genus 0 6088 29 1 0 169 1505907 species Thermococcus eurythermalis Thermococcus profundus 0 1 108 species 49899 0 1 303 species 54077 Thermococcus barossii Thermococcus celer species 2264 1 0 171 0 1 143 187878 species Thermococcus gammatolerans Thermococcus thioreducens species 277988 325 0 1 1 0 180 195522 species Thermococcus nautili Thermococcus chitonophagus 1 0 75 54262 species 2627626 no rank 6 1530 0 Thermococcus sp. 5-4 0 282 1 species 2008440 Thermococcus sp. P6 1 0 318 122420 species 2016361 species 0 1 118 Thermococcus sp. EXT12c species 1674923 0 136 1 Thermococcus sp. 2319x1 Thermococcus sp. 4557 0 1 250 1042877 species 0 1 426 246969 species Thermococcus sp. AM4 Thermococcus radiotolerans species 187880 0 289 1 Thermococcus barophilus 0 223 1 55802 species Thermococcus litoralis 0 1 192 2265 species Thermococcus pacificus 0 1 204 species 71998 78 0 1 71997 species Thermococcus gorgonarius 110164 species 158 0 1 Thermococcus guaymasensis 0 115 1 species 342948 Thermococcus onnurineus Thermococcus kodakarensis 0 1 163 311400 species 1712654 species 256 0 1 Thermococcus piezophilus Thermococcus peptonophilus species 53952 1 0 193 Thermococcus cleftensis species 163003 378 0 1 Thermococcus siculi 72803 species 1 0 104 Thermococcus sibiricus 0 379 1 172049 species Thermococcus paralvinellae species 582419 0 1 301 1 0 179 genus 83867 0 1 179 971279 species Palaeococcus pacificus 0 7 747 2260 genus 1 0 189 2261 species Pyrococcus furiosus Pyrococcus kukulkanii species 1609559 61 0 1 266 0 2 2629106 no rank species 1183377 130 0 1 Pyrococcus sp. ST04 342949 species 136 0 1 Pyrococcus sp. NA2 0 136 1 53953 species Pyrococcus horikoshii species 29292 0 1 42 Pyrococcus abyssi Pyrococcus yayanosii 1 0 53 species 1008460 clade 2290931 0 33287 112 15039 0 63 183963 class 1 Halobacteria 99 4359 0 16 order 1644060 1 Natrialbales 108 104 1644061 family 0 15 4251 Natrialbaceae 1 1 409 0 1269201 genus 0 1 409 2621923 no rank 1 0 409 1333523 species Salinarchaeum sp. Harcht-Bsk1 1 Natronococcus 605 0 2 genus 29287 1 29288 species 0 604 1 Natronococcus occultus genus 203193 1 502 0 Halobiforma lacisalsi 0 502 1 229731 species 272 0 2 353799 genus 1 Halostagnicola 1 Halostagnicola larsenii species 353800 0 1 271 387342 genus 0 1 399 0 399 1 species 387343 Halopiger xanaduensis Haloterrigena 1 121871 genus 3 0 706 5 Haloterrigena daqingensis 588898 species 1 0 248 0 453 1 62320 species Haloterrigena turkmenica 2 851 0 genus 88723 2622230 no rank 344 1 0 Natrinema sp. J7-2 406552 species 0 1 344 Natrinema pellirubrum species 69525 0 507 1 63742 genus 276 1 0 Natrialba magadii 276 0 1 13769 species 127 1 0 2256 genus Natronobacterium gregoryi 0 127 1 44930 species 0 4427 18 order 1644055 1 Haloferacales 75 2678336 no rank 402 1 0 0 402 1 756883 species halophilic archaeon DL31 7 1 Haloferacaceae 0 8 2116 1644056 family 132 0 1 genus 293431 0 132 1 species 293091 Haloquadratum walsbyi 3 60846 genus 298 0 2 Halogeometricum 1 Halogeometricum borinquense species 60847 0 1 295 Haloferax 1 2251 genus 0 1679 4 41 Haloferax mediterranei species 2252 1 0 379 Haloferax volcanii 622 0 1 species 2246 Haloferax gibbonsii 0 637 1 35746 species 12 family 1963271 1834 0 8 Halorubraceae 1 6 1209988 genus 0 2 274 Halopenitus 1 Halopenitus persicus species 1048396 1 0 268 7 Halorubrum 1 56688 genus 0 3 788 Halorubrum trapanicum 359 0 1 species 29284 2247 species 1 0 422 Halorubrum lacusprofundi 760 0 2 1644057 genus 1 Salinigranum 16 Salinigranum rubrum 0 744 1 species 755307 129 order 2235 6154 0 28 Halobacteriales 1 11 1 Halobacteriaceae 11 0 2293 2236 family 1980514 genus 0 204 2 Halodesulfurarchaeum 1 2 1873524 species 0 202 1 Halodesulfurarchaeum formicicum 1 1656823 genus 0 2 156 Halanaeroarchaeum 1 Halanaeroarchaeum sulfurireducens 0 1 155 species 1604004 Halobacterium 1 2239 genus 4 0 1482 14 Halobacterium salinarum 1 0 504 species 2242 2668073 no rank 0 1 343 Halobacterium sp. DL1 343 0 1 species 751944 0 621 1 species 1407499 Halobacterium hubeiense 21 Halalkalicoccus 1 332246 genus 440 0 2 0 419 1 species 413810 Halalkalicoccus jeotgali 1 Haloarculaceae 3732 0 16 1963268 family 61 3 genus 63743 855 0 3 Natronomonas 1 1 0 416 2257 species Natronomonas pharaonis Natronomonas moolapensis 0 436 1 416273 species 146825 genus 0 565 3 Halorhabdus 1 18 430914 species 0 1 184 Halorhabdus tiamatea 363 0 1 species 146826 Halorhabdus utahensis 1 Halomicrobium 1 genus 203135 451 0 2 0 450 1 57705 species Halomicrobium mukohataei 23 2 0 430 1073987 genus 1 Halorientalis 2648975 no rank 407 1 0 species 1932360 0 1 407 Halorientalis sp. IM1011 26 1 Haloarcula 0 1370 5 genus 2237 Haloarcula taiwanensis 0 222 1 1932004 species Haloarcula hispanica 372 0 1 51589 species species 2238 357 0 1 Haloarcula marismortui 393 1 0 no rank 2624677 Haloarcula sp. CBA1115 1592728 species 0 393 1 Methanomicrobia 1 224756 class 0 49 18248 33 23 order 2191 0 4668 14 Methanomicrobiales 1 family 196137 360 1 0 360 1 0 2202 genus Methanospirillum hungatei species 2203 0 360 1 Methanomicrobiaceae 1 family 2194 0 6 2342 3 18 0 4 1931 genus 45989 1 Methanoculleus species 83986 1 0 727 Methanoculleus bourgensis no rank 2619537 710 1 0 Methanoculleus sp. MAB1 86622 species 710 0 1 Methanoculleus marisnigri species 2198 476 0 1 230355 genus 0 1 408 Methanolacinia petrolearia 54120 species 0 1 408 Methanoregulaceae 1 1198451 family 1107 0 5 19 3 Methanoregula 1 genus 395331 761 0 3 0 496 1 358766 species Methanoregula boonei Methanoregula formicica 0 1 262 species 882104 327 0 1 genus 475087 475088 species 0 327 1 Methanosphaerula palustris 88404 family 0 836 1 genus 2192 1 836 0 0 836 1 83984 species Methanocorpusculum labreanum 1 Methanocellales 802 0 5 570264 order 10 1 Methanocellaceae 1 570265 family 0 4 792 1 Methanocella 0 791 3 570266 genus 7 Methanocella arvoryzae 0 506 1 species 1175445 Methanocella conradii 0 1 278 1175444 species 25 order 94695 12745 0 29 Methanosarcinales 1 9 0 24 11935 family 2206 1 Methanosarcinaceae 266 1 0 genus 101191 species 101192 0 1 266 Methanomethylovorans hollandica 1 1 Methanococcoides 3 0 587 genus 2225 Methanococcoides burtonii 1 0 257 29291 species 2226 species 329 0 1 Methanococcoides methylutens 236 0 1 genus 2220 420950 species 236 0 1 Methanolobus psychrophilus 1 Methanosarcina 0 9105 13 genus 2207 61 Methanosarcina horonobensis species 418008 0 796 1 Methanosarcina mazei species 2209 0 1 1093 0 365 1 2210 species Methanosarcina thermophila 2528 4 0 2644672 no rank Methanosarcina sp. WWM596 394 0 1 species 1434103 Methanosarcina sp. WH1 species 1434102 0 693 1 species 1434099 1 0 853 Methanosarcina sp. Kolksee 1 0 588 1434100 species Methanosarcina sp. MTP4 Methanosarcina siciliae 38027 species 623 0 1 Methanosarcina barkeri 0 1 2142 2208 species Methanosarcina vacuolata species 2215 0 1 698 Methanosarcina lacustris species 170861 267 0 1 532 0 1 species 2214 Methanosarcina acetivorans 0 411 1 196136 genus Methanosalsum zhilinae species 39669 1 0 411 2321 genus 1 663 0 Methanohalobium evestigatum species 2322 663 0 1 1 Methanohalophilus 3 0 658 2175 genus 3 2176 species 1 0 322 Methanohalophilus mahii Methanohalophilus halophilus 333 0 1 2177 species 4 143067 family 0 785 4 Methanosaetaceae 1 Methanothrix 1 2222 genus 0 781 3 2 Methanosaeta harundinacea species 301375 0 393 1 Methanothrix soehngenii 0 386 1 species 2223 12558 40 0 clade 2283794 0 23 7078 183925 class 1 Methanobacteria 3 1 2158 order 7075 0 22 Methanobacteriales 1 Methanobacteriaceae 1 family 2159 20 0 6911 3 1 genus 2172 7 0 3346 Methanobrevibacter 1 Methanobrevibacter olleyae species 294671 677 0 1 2 843 0 2638681 no rank 0 1 330 224719 species Methanobrevibacter sp. AbM4 Methanobrevibacter sp. YE315 species 1609968 1 0 513 Methanobrevibacter millerae 0 725 1 230361 species 1 0 603 species 2173 Methanobrevibacter smithii Methanobrevibacter ruminantium species 83816 0 497 1 0 640 1 2316 genus Methanosphaera stadtmanae 640 0 1 species 2317 145260 genus 986 4 0 Methanothermobacter thermautotrophicus 1 0 124 species 145262 372 0 1 no rank 2631116 866790 species 0 1 372 Methanothermobacter sp. CaT2 145261 species 0 1 109 Methanothermobacter wolfeii 0 381 1 species 145263 Methanothermobacter marburgensis 0 7 1936 genus 2160 Methanobacterium congolense species 118062 197 0 1 59277 species 0 309 1 Methanobacterium subterraneum 2 488 0 2627676 no rank species 1379702 0 173 1 Methanobacterium sp. MB1 species 1911685 0 1 315 Methanobacterium sp. MZ-A1 868131 species 0 408 1 Methanobacterium paludis 0 1 268 species 877455 Methanobacterium lacus 2162 species 0 1 266 Methanobacterium formicicum 1 0 163 family 2178 163 1 0 genus 2179 0 1 163 species 2180 Methanothermus fervidus 2 17 0 5480 183939 class 1 Methanococci 1 Methanococcales 0 16 5478 2182 order 3 0 2299 9 family 196117 1849 0 7 genus 196118 1 Methanocaldococcus 1 1301915 species 1 0 281 Methanocaldococcus bathoardescens Methanocaldococcus fervens 83171 species 0 377 1 1 0 264 species 73913 Methanocaldococcus vulcanius Methanocaldococcus infernus species 67760 0 191 1 343 0 1 species 2190 Methanocaldococcus jannaschii 0 392 1 2641196 no rank Methanocaldococcus sp. FS406-22 0 1 392 644281 species 14 Methanotorris 1 196119 genus 0 450 2 1 0 436 species 2189 Methanotorris igneus 2 0 3176 6 2183 family 1 Methanococcaceae 2184 genus 0 4 2868 42879 species 1 0 228 Methanococcus aeolicus species 39152 1768 0 1 Methanococcus maripaludis Methanococcus voltae species 2188 0 1 341 Methanococcus vannielii 2187 species 0 1 531 0 1 306 155862 genus 0 306 1 155863 species Methanothermococcus okinawensis 9 0 1930 class 183980 1930 9 0 order 2231 1 Archaeoglobaceae 1 2232 family 9 0 1930 1 genus 2233 0 1287 5 Archaeoglobus 1 Archaeoglobus veneficus species 58290 244 0 1 species 84156 0 1 354 Archaeoglobus profundus species 1316941 1 0 466 Archaeoglobus sulfaticallidus Archaeoglobus fulgidus 1 0 222 species 2234 190818 genus 0 475 2 Geoglobus ahangari 1 0 221 species 113653 Geoglobus acetivorans species 565033 0 254 1 54260 genus 1 167 0 species 54261 167 0 1 Ferroglobus placidus clade 2283796 20 0 4115 2 0 332 1803510 clade 2 0 332 379546 genus Aciduliprofundum boonei 0 1 200 species 379547 0 132 1 2633939 no rank Aciduliprofundum sp. MAR08-339 673860 species 1 0 132 183967 class 18 0 3783 Thermoplasmata 1 9 722 0 1 1234666 no rank methanogenic archaeon ISO4-H5 0 1 722 species 1495144 1 1 Thermoplasmatales 1782 0 10 2301 order 2 255 0 1747776 family 2 255 0 2 genus 1747777 1 Cuniculiplasma 1673428 species 1 0 253 Cuniculiplasma divulgatum 0 349 2 family 90142 0 2 349 74968 genus Ferroplasma acidarmanus species 97393 0 1 188 0 1 161 74969 species Ferroplasma acidiphilum 1919231 no rank 0 1 580 0 1 580 1054217 species Thermoplasmatales archaeon BRNA1 1 Picrophilaceae 2 0 282 46630 family 1 46631 genus 0 281 1 0 1 281 species 82076 Picrophilus torridus 46659 family 2 315 0 0 315 2 2302 genus 1 0 61 species 2303 Thermoplasma acidophilum 50339 species 254 0 1 Thermoplasma volcanium 1 Methanomassiliicoccales 0 1270 6 1235850 order 5 Methanomassiliicoccaceae 1 1577788 family 0 3 805 2 1607807 genus 1 191 0 species 1577791 191 0 1 Candidatus Methanoplasma termitum genus 1080709 612 1 0 Candidatus Methanomassiliicoccus intestinalis 1 0 612 1406512 species 0 460 2 family 2517203 19 Candidatus Methanomethylophilus 1 genus 1291539 2 0 460 0 441 1 species 1291540 Candidatus Methanomethylophilus alvus 5527 0 50 clade 1783275 phylum 28889 39 3824 0 1 1 Thermoprotei 0 3824 39 class 183924 2281 order 1586 8 0 118883 family 8 1586 0 2100760 genus 0 179 1 179 0 1 species 2287 Sulfolobus solfataricus 1 0 201 12914 genus Acidianus hospitalis 201 0 1 563177 species 41980 genus 132 2 0 Metallosphaera cuprina 70 0 1 1006005 species Metallosphaera sedula 1 0 62 species 43687 1 409 0 69655 genus 1 0 409 species 111955 Sulfolobus tokodaii 2284 genus 3 665 0 1 0 100 2641160 no rank Sulfolobus sp. A20 0 100 1 1891280 species Sulfolobus acidocaldarius 0 91 1 species 2285 Sulfolobus islandicus 43080 species 1 0 474 order 114380 0 725 12 family 2272 0 9 562 2 0 263 genus 2279 species 84599 0 1 91 Staphylothermus hellenicus Staphylothermus marinus 1 0 172 2280 species 1 0 3 69 genus 54258 1 Ignicoccus Ignicoccus islandicus species 54259 28 0 1 1 0 40 species 160233 Ignicoccus hospitalis 136 2 0 2273 genus 1 0 101 2275 species Desulfurococcus mucosus Desulfurococcus amylolyticus species 94694 0 1 35 genus 477695 1 0 48 1200300 species 0 1 48 Thermogladius calderae 1 46 0 genus 54253 species 54254 1 0 46 Thermosphaera aggregans 2307 family 163 3 0 54247 genus 34 1 0 34 0 1 species 54248 Hyperthermus butylicus 52 0 1 genus 54251 Pyrolobus fumarii 52 0 1 species 54252 0 1 77 2308 genus species 1273541 1 0 77 Pyrodictium delaneyi 11 15 0 1273 order 2266 1 Thermoproteales 0 606 8 2267 family 1 Thermoproteaceae 19 2 241 0 2270 genus Thermoproteus tenax 2271 species 82 0 1 Thermoproteus uzoniensis 184117 species 1 0 159 1 0 140 genus 76886 Caldivirga maquilingensis 76887 species 1 0 140 1 179 0 3 genus 164450 1 Vulcanisaeta 0 93 1 985052 species Vulcanisaeta moutnovskia Vulcanisaeta distributa species 164451 0 1 85 genus 2276 1 0 27 1 0 27 species 2277 Pyrobaculum islandicum 1 6 0 656 114378 family 1 Thermofilaceae 0 5 655 2268 genus 1 Thermofilum 7 0 1 112 species 2269 Thermofilum pendens Thermofilum uzonense 1550241 species 1 0 62 Thermofilum carboxyditrophus 1 0 241 species 1483572 1 0 233 1365176 species Thermofilum adornatus 1 3 0 239 871006 order 1 Acidilobales 871007 family 0 89 1 genus 105850 0 1 89 0 1 89 species 242703 Acidilobus saccharovorans 255472 family 0 1 149 1 149 0 200414 genus Caldisphaera lagunensis 200415 species 149 0 1 1 0 12 phylum 51967 498845 genus 1 12 0 species 498846 0 1 12 Candidatus Korarchaeum cryptofilum phylum 651137 1691 10 0 791 0 3 order 31932 3 0 791 family 338190 1 0 331 genus 1993653 Candidatus Nitrosomarinus catalina 0 1 331 species 1898749 338191 genus 0 2 460 226 0 1 species 1580092 Candidatus Nitrosopumilus adriaticus 0 1 234 1229909 species Candidatus Nitrosopumilus sediminis no rank 651142 542 0 3 232 2 0 1825023 genus 1603555 species 0 143 1 Candidatus Nitrosotenuis cloacae 1 0 89 1846278 species Candidatus Nitrosotenuis sp. AQ6f genus 1593364 310 1 0 Candidatus Nitrosopelagicus brevis species 1410606 310 0 1 1643678 class 358 4 0 order 1033996 312 0 3 Nitrososphaerales 1 2 family 1033997 0 310 2 497726 genus 0 2 310 Nitrososphaera 1 8 1 0 302 species 1034015 Nitrososphaera viennensis order 1968909 46 1 0 family 1968910 0 1 46 0 46 1 498374 genus 0 1 46 species 2045011 Candidatus Nitrosocaldus islandicus