members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4680 9328 5238789 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 31 30738 273 2157 0 superkingdom phylum 0 28890 223 25969 clade 0 1515 2283796 22 class 0 183967 19 1332 order 0 381 1235850 6 0 family 104 2 2517203 1291539 2 Candidatus Methanomethylophilus 1 104 1 genus 0 1 1291540 103 Candidatus Methanomethylophilus alvus 0 species 1577788 4 Methanomassiliicoccaceae 1 277 5 family 0 2 0 genus 2 1080709 169 1 Methanomassiliicoccus 1 1406512 167 Candidatus Methanomassiliicoccus intestinalis 0 species 0 genus 1 1607807 103 0 species 103 Candidatus Methanoplasma termitum 1 1577791 870 12 2301 0 order no rank 0 96 1919231 1 1 1054217 96 Thermoplasmatales archaeon BRNA1 0 species 3 46659 179 0 family 1 0 genus 3 2302 179 Thermoplasma 1 species 0 2303 1 Thermoplasma acidophilum 74 104 Thermoplasma volcanium 1 50339 0 species 0 family 288 3 90142 0 genus 5 288 1 Ferroplasma 3 74968 species 0 74969 1 Ferroplasma acidiphilum 143 140 Ferroplasma acidarmanus 1 97393 0 species 1747776 3 1 Cuniculiplasmataceae 171 3 family 0 genus 0 1 Cuniculiplasma 1 168 1747777 2 0 species 1 1673428 167 Cuniculiplasma divulgatum 136 46630 2 family 0 Picrophilus 1 136 46631 2 genus 0 3 82076 1 Picrophilus torridus 133 species 0 81 1234666 1 no rank 0 0 species 1 1495144 81 methanogenic archaeon ISO4-H5 1803510 3 183 clade 0 1 Aciduliprofundum 183 379546 3 genus 0 1 73 1 2633939 0 no rank 0 species 73 Aciduliprofundum sp. MAR08-339 1 673860 109 Aciduliprofundum boonei 1 379547 0 species 8397 2283794 43 clade 0 class 0 1 Methanococci 1 4382 183939 17 order 0 4 1 Methanococcales 4381 2182 16 family 0 2501 2183 6 genus 0 155862 1 267 species 0 155863 1 Methanothermococcus okinawensis 267 5 2184 2234 Methanococcus 1 2 0 genus species 0 Methanococcus aeolicus 348 42879 1 0 species 316 Methanococcus voltae 1 2188 1 2187 327 Methanococcus vannielii 0 species 1241 Methanococcus maripaludis 1 39152 0 species 1 family 0 196117 9 1 Methanocaldococcaceae 1876 0 genus 9 1627 1 Methanocaldococcus 7 196118 species 0 Methanocaldococcus vulcanius 272 73913 1 195 Methanocaldococcus infernus 1 67760 0 species 282 1 2641196 0 no rank species 0 644281 1 Methanocaldococcus sp. FS406-22 282 0 species 1 1301915 311 Methanocaldococcus bathoardescens 83171 1 Methanocaldococcus fervens 284 species 0 species 0 Methanocaldococcus jannaschii 274 2190 1 genus 0 196119 1 248 species 0 2189 1 Methanotorris igneus 248 4 0 class 26 183925 4015 Methanobacteria 1 0 order 3 4011 Methanobacteriales 1 25 2158 Methanothermaceae 1 313 2178 2 family 0 1 1 2179 312 0 genus Methanothermus fervidus 312 2180 1 species 0 3 family 0 2159 22 Methanobacteriaceae 1 3695 411 1 2316 0 genus Methanosphaera stadtmanae 411 2317 1 species 0 1 Methanobrevibacter 1991 2172 7 genus 0 3 0 species 1 83816 251 Methanobrevibacter ruminantium 419 Methanobrevibacter smithii 1 2173 0 species 0 species 1 294671 478 Methanobrevibacter olleyae 394 Methanobrevibacter millerae 1 230361 0 species 2638681 2 446 no rank 0 0 species 209 Methanobrevibacter sp. YE315 1 1609968 0 species 237 Methanobrevibacter sp. AbM4 1 224719 1059 Methanobacterium 1 8 2160 0 genus 7 59277 1 Methanobacterium subterraneum 96 species 0 181 Methanobacterium congolense 1 118062 0 species Methanobacterium formicicum 145 2162 1 species 0 no rank 0 212 2627676 2 species 0 Methanobacterium sp. MB1 112 1379702 1 Methanobacterium sp. MZ-A1 100 1911685 1 species 0 212 Methanobacterium lacus 1 877455 0 species 0 species 1 868131 206 Methanobacterium paludis 145260 5 Methanothermobacter 1 231 2 genus 0 species 0 145261 1 Methanothermobacter wolfeii 53 0 species 1 145262 52 Methanothermobacter thermautotrophicus Methanothermobacter marburgensis 54 145263 1 species 0 2631116 1 70 no rank 0 70 Methanothermobacter sp. CaT2 1 866790 0 species class 0 462 183980 10 2 0 order 10 2231 462 1 Archaeoglobales 0 family 460 9 2232 3 0 genus 5 2233 291 1 Archaeoglobus species 0 Archaeoglobus sulfaticallidus 71 1316941 1 0 species 1 84156 89 Archaeoglobus profundus 0 species 65 Archaeoglobus fulgidus 1 2234 0 species 63 Archaeoglobus veneficus 1 58290 0 genus 74 1 54260 1 54261 74 Ferroglobus placidus 0 species genus 0 1 1 Geoglobus 95 190818 3 species 0 Geoglobus ahangari 39 113653 1 Geoglobus acetivorans 55 565033 1 species 0 2290931 109 13655 clade 0 224756 51 Methanomicrobia 1 5229 11 class 0 8 order 0 94695 27 1 Methanosarcinales 4053 0 family 244 3 143067 3 2222 244 1 Methanothrix 9 0 genus 1 301375 132 Methanosaeta harundinacea 0 species 1 2223 103 Methanothrix soehngenii 0 species 10 family 0 2206 23 1 Methanosarcinaceae 3801 0 genus 262 2 2175 137 Methanohalophilus halophilus 1 2177 0 species 2176 1 Methanohalophilus mahii 125 species 0 0 genus 1 2220 100 0 species 1 420950 100 Methanolobus psychrophilus 0 genus 236 2 2225 species 0 Methanococcoides methylutens 96 2226 1 species 0 29291 1 Methanococcoides burtonii 140 0 genus 202 1 2321 1 2322 202 Methanohalobium evestigatum 0 species 174 1 196136 0 genus 1 39669 174 Methanosalsum zhilinae 0 species 2 101191 120 Methanomethylovorans 1 3 0 genus species 0 101192 1 Methanomethylovorans hollandica 117 0 genus 7 2697 Methanosarcina 1 13 2207 141 Methanosarcina lacustris 1 170861 0 species no rank 0 2644672 4 710 0 species 221 Methanosarcina sp. Kolksee 1 1434099 177 Methanosarcina sp. MTP4 1 1434100 0 species 1434103 1 Methanosarcina sp. WWM596 158 species 0 0 species 1 1434102 154 Methanosarcina sp. WH1 210 Methanosarcina siciliae 1 38027 0 species Methanosarcina horonobensis 182 418008 1 species 0 124 Methanosarcina thermophila 1 2210 0 species Methanosarcina acetivorans 186 2214 1 species 0 species 0 Methanosarcina mazei 315 2209 1 593 Methanosarcina barkeri 1 2208 0 species species 0 Methanosarcina vacuolata 229 2215 1 2 order 0 570264 5 Methanocellales 1 191 189 1 Methanocellaceae 4 570265 0 family 4 0 genus 18 185 Methanocella 1 3 570266 51 Methanocella conradii 1 1175444 0 species Methanocella arvoryzae 116 1175445 1 species 0 12 0 order 18 2191 974 Methanomicrobiales 1 Methanoregulaceae 1 262 1198451 6 family 0 8 8 genus 0 395331 3 1 Methanoregula 161 Methanoregula boonei 75 358766 1 species 0 0 species 78 Methanoregula formicica 1 882104 4 0 genus 2 475087 93 1 Methanosphaerula 0 species 89 Methanosphaerula palustris 1 475088 family 0 75 88404 2 4 genus 0 2192 2 Methanocorpusculum 1 75 species 0 83984 1 Methanocorpusculum labreanum 71 196137 2 126 family 0 2202 2 1 Methanospirillum 126 10 genus 0 Methanospirillum hungatei 116 2203 1 species 0 6 0 family 7 2194 499 Methanomicrobiaceae 1 0 genus 6 109 Methanolacinia 1 2 230355 103 Methanolacinia petrolearia 1 54120 0 species 45989 4 Methanoculleus 1 384 8 genus 0 2619537 1 111 no rank 0 Methanoculleus sp. MAB1 111 86622 1 species 0 2198 1 Methanoculleus marisnigri 119 species 0 0 species 146 Methanoculleus bourgensis 1 83986 class 0 21 Halobacteria 1 8426 183963 58 0 order 17 3041 1 Natrialbales 19 1644060 1644061 18 Natrialbaceae 1 3024 17 family 0 4 0 genus 2 29287 238 Natronococcus 1 Natronococcus occultus 234 29288 1 species 0 genus 0 2 Natronobacterium 1 188 2256 2 Natronobacterium gregoryi 186 44930 1 species 0 121871 3 Haloterrigena 1 518 5 genus 0 287 Haloterrigena turkmenica 1 62320 0 species 1 588898 226 Haloterrigena daqingensis 0 species 2 genus 0 1269201 2 Salinarchaeum 1 201 0 no rank 199 1 2621923 0 species 1 1333523 199 Salinarchaeum sp. Harcht-Bsk1 genus 0 88723 2 357 123 1 2622230 0 no rank 123 Natrinema sp. J7-2 1 406552 0 species species 0 69525 1 Natrinema pellirubrum 234 313 Halobiforma 1 2 203193 0 genus 1 0 species 312 Halobiforma lacisalsi 1 229731 1 63742 771 0 genus 0 species 771 Natrialba magadii 1 13769 1 genus 0 387342 2 1 Halopiger 295 0 species 294 Halopiger xanaduensis 1 387343 126 353799 1 genus 0 1 353800 126 Halostagnicola larsenii 0 species 24 0 order 15 1644055 2871 1 Haloferacales 5 1963271 932 Halorubraceae 1 4 0 family 250 1644057 1 genus 0 1 755307 250 Salinigranum rubrum 0 species 499 2 56688 0 genus species 0 Halorubrum lacusprofundi 220 2247 1 29284 1 Halorubrum trapanicum 279 species 0 1 1209988 179 0 genus species 0 1048396 1 Halopenitus persicus 179 1 2678336 152 0 no rank 152 halophilic archaeon DL31 1 756883 0 species 8 1644056 1763 Haloferacaceae 1 6 0 family 0 genus 6 901 1 Haloferax 4 2251 1 2252 137 Haloferax mediterranei 0 species 0 species 1 2246 335 Haloferax volcanii Haloferax gibbonsii 423 35746 1 species 0 genus 0 60846 1 116 Halogeometricum borinquense 116 60847 1 species 0 1 0 genus 2 293431 740 Haloquadratum 1 739 Haloquadratum walsbyi 1 293091 0 species 0 order 22 2493 1 Halobacteriales 23 2235 1482 1 Haloarculaceae 14 1963268 0 family 9 2 1073987 212 Halorientalis 1 2 0 genus 210 2648975 1 no rank 0 210 Halorientalis sp. IM1011 1 1932360 0 species 6 0 genus 3 146825 287 1 Halorhabdus 0 species 155 Halorhabdus tiamatea 1 430914 Halorhabdus utahensis 126 146826 1 species 0 187 203135 1 genus 0 species 0 Halomicrobium mukohataei 187 57705 1 genus 0 11 Haloarcula 1 529 2237 5 51589 1 Haloarcula hispanica 139 species 0 2624677 1 134 no rank 0 0 species 1 1592728 134 Haloarcula sp. CBA1115 0 species 1 1932004 121 Haloarcula taiwanensis 1 2238 124 Haloarcula marismortui 0 species genus 0 63743 2 258 species 0 2257 1 Natronomonas pharaonis 111 species 0 416273 1 Natronomonas moolapensis 147 4 0 family 8 2236 989 Halobacteriaceae 1 genus 0 8 Halobacterium 1 644 2239 4 230 1 2668073 0 no rank 0 species 230 Halobacterium sp. DL1 1 751944 Halobacterium salinarum 168 2242 1 species 0 1 1407499 238 Halobacterium hubeiense 0 species genus 0 166 332246 1 1 413810 166 Halalkalicoccus jeotgali 0 species 0 genus 1 1656823 87 species 0 Halanaeroarchaeum sulfurireducens 87 1604004 1 1 1980514 88 0 genus 1873524 1 Halodesulfurarchaeum formicicum 88 species 0 0 class 1940 39 183968 39 2258 1940 0 order 39 2259 1940 Thermococcaceae 1 1 0 family 21 genus 0 2263 29 Thermococcus 1 1353 species 0 Thermococcus kodakarensis 37 311400 1 0 species 45 Thermococcus nautili 1 195522 0 species 1 187878 22 Thermococcus gammatolerans species 0 Thermococcus litoralis 102 2265 1 0 no rank 6 2627626 197 246969 1 Thermococcus sp. AM4 22 species 0 Thermococcus sp. 2319x1 59 1674923 1 species 0 Thermococcus sp. P6 18 122420 1 species 0 species 0 1042877 1 Thermococcus sp. 4557 40 1 2008440 34 Thermococcus sp. 5-4 0 species 1 2016361 24 Thermococcus sp. EXT12c 0 species species 0 Thermococcus celer 45 2264 1 species 0 Thermococcus cleftensis 26 163003 1 Thermococcus onnurineus 14 342948 1 species 0 Thermococcus profundus 46 49899 1 species 0 species 0 Thermococcus paralvinellae 112 582419 1 Thermococcus pacificus 33 71998 1 species 0 1 1712654 20 Thermococcus piezophilus 0 species species 0 Thermococcus radiotolerans 32 187880 1 0 species 28 Thermococcus eurythermalis 1 1505907 0 species 1 54077 26 Thermococcus barossii species 0 Thermococcus guaymasensis 25 110164 1 0 species 1 71997 33 Thermococcus gorgonarius 0 species 1 53952 25 Thermococcus peptonophilus species 0 Thermococcus thioreducens 25 277988 1 55802 1 Thermococcus barophilus 133 species 0 1 72803 122 Thermococcus siculi 0 species 0 species 1 54262 67 Thermococcus chitonophagus 117 Thermococcus sibiricus 1 172049 0 species 478 1 Pyrococcus 8 2260 0 genus 2 0 no rank 170 2 2629106 0 species 1 1183377 83 Pyrococcus sp. ST04 0 species 1 342949 87 Pyrococcus sp. NA2 species 0 1609559 1 Pyrococcus kukulkanii 44 0 species 97 Pyrococcus furiosus 1 2261 0 species 1 1008460 31 Pyrococcus yayanosii species 0 29292 1 Pyrococcus abyssi 58 Pyrococcus horikoshii 76 53953 1 species 0 83867 1 108 genus 0 0 species 108 Palaeococcus pacificus 1 971279 clade 0 4711 1783275 49 25 1 51967 0 phylum 0 genus 1 498845 25 species 0 Candidatus Korarchaeum cryptofilum 25 498846 1 0 phylum 36 28889 2589 Thermoprotei 1 2589 183924 36 class 0 2 871006 2 267 order 0 family 0 23 871007 1 23 1 105850 0 genus 0 species 23 Acidilobus saccharovorans 1 242703 244 255472 1 family 0 244 200414 1 genus 0 0 species 244 Caldisphaera lagunensis 1 200415 Desulfurococcales 1 470 114380 12 order 0 1 75 2307 3 family 0 34 1 54247 0 genus 34 Hyperthermus butylicus 1 54248 0 species 0 genus 15 1 54251 54252 1 Pyrolobus fumarii 15 species 0 genus 0 26 2308 1 0 species 1 1273541 26 Pyrodictium delaneyi 8 2272 394 0 family 67 2 2273 0 genus 0 species 20 Desulfurococcus mucosus 1 2275 0 species 47 Desulfurococcus amylolyticus 1 94694 25 477695 1 genus 0 1 1200300 25 Thermogladius calderae 0 species 30 54253 1 genus 0 species 0 54254 1 Thermosphaera aggregans 30 46 54258 2 genus 0 1 160233 27 Ignicoccus hospitalis 0 species 1 54259 19 Ignicoccus islandicus 0 species 226 2 2279 0 genus species 0 Staphylothermus marinus 137 2280 1 89 Staphylothermus hellenicus 1 84599 0 species 2 order 0 2266 11 1 Thermoproteales 376 270 2267 6 family 0 genus 0 80 2270 2 30 Thermoproteus tenax 1 2271 0 species 184117 1 Thermoproteus uzoniensis 50 species 0 2276 1 29 genus 0 2277 1 Pyrobaculum islandicum 29 species 0 76886 1 44 genus 0 species 0 Caldivirga maquilingensis 44 76887 1 genus 0 164450 2 117 0 species 1 985052 64 Vulcanisaeta moutnovskia species 0 Vulcanisaeta distributa 53 164451 1 family 0 104 114378 4 104 2268 4 genus 0 19 Thermofilum carboxyditrophus 1 1483572 0 species Thermofilum uzonense 41 1550241 1 species 0 0 species 17 Thermofilum adornatus 1 1365176 0 species 1 2269 27 Thermofilum pendens order 0 1474 2281 10 1 0 family 10 118883 1474 1 Sulfolobaceae 2284 4 1 Sulfolobus 658 2 genus 0 0 no rank 191 1 2641160 0 species 1 1891280 191 Sulfolobus sp. A20 2285 1 Sulfolobus acidocaldarius 132 species 0 43080 1 Sulfolobus islandicus 333 species 0 genus 0 69655 1 287 1 111955 287 Sulfolobus tokodaii 0 species 0 genus 231 1 2100760 0 species 1 2287 231 Sulfolobus solfataricus 116 41980 2 genus 0 43687 1 Metallosphaera sedula 41 species 0 0 species 1 1006005 75 Metallosphaera cuprina 0 genus 181 1 12914 species 0 563177 1 Acidianus hospitalis 181 12 651137 2097 0 phylum 0 no rank 4 651142 510 0 genus 193 2 1825023 0 species 1 1603555 107 Candidatus Nitrosotenuis cloacae 1 1846278 86 Candidatus Nitrosotenuis sp. AQ6f 0 species 0 genus 1 317 Candidatus Nitrosopelagicus 1 2 1593364 1 1410606 316 Candidatus Nitrosopelagicus brevis 0 species class 0 440 1643678 2 0 order 218 1 1968909 1 1968910 218 0 family 498374 1 218 genus 0 species 0 Candidatus Nitrosocaldus islandicus 218 2045011 1 0 order 1 1033996 222 222 1033997 1 family 0 1 497726 222 0 genus 222 Nitrososphaera viennensis 1 1034015 0 species Nitrosopumilales 1 1147 31932 6 order 0 4 1143 338190 5 family 0 8 0 genus 2 1993653 500 Candidatus Nitrosomarinus 1 species 0 1898749 1 Candidatus Nitrosomarinus catalina 492 0 genus 3 643 1 Nitrosopumilus 3 338191 species 0 1229909 1 Candidatus Nitrosopumilus sediminis 287 1580092 1 Candidatus Nitrosopumilus adriaticus 353 species 0 clade 0 58 1783276 1 0 phylum 1 1801631 58 genus 0 2490204 1 58 0 species 1 1920749 58 Candidatus Micrarchaeota archaeon Mia14 0 0 name 1 2 4375 Bacteria 1 5198723 23 superkingdom 0 327 1930617 2 phylum 0 2 1962850 327 0 class 4 order 0 1962852 2 1 Calditrichales 327 family 0 1962854 1 323 genus 0 323 187144 1 187145 1 Caldithrix abyssi 323 species 0 clade 0 3807039 1783272 1651 3342271 1798711 152 clade 0 18 0 phylum 152 1117 3342271 Cyanobacteria 1 33 1161 15479 Nostocales 1 37 0 order 1162 17 1 Nostocaceae 8452 33 family 0 1145 264688 2 genus 0 species 0 1164 1 Trichormus azollae 611 1 264691 534 Trichormus variabilis 0 species 53 genus 0 1177 10 Nostoc 1 5043 560 Nostoc punctiforme 1 272131 0 species species 0 Nostoc flagelliforme 564 1306274 1 0 no rank 7 2593658 3866 Nostoc sp. PCC 7120 444 103690 1 species 0 568 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 1261031 0 species 1751286 1 Nostoc sp. NIES-3756 663 species 0 Nostoc sp. PCC 7524 604 28072 1 species 0 532 Nostoc sp. CENA543 1 1869241 0 species 317936 1 Nostoc sp. PCC 7107 561 species 0 0 species 1 1618022 494 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 genus 13 2231 Anabaena 1 4 1163 0 no rank 2 2619674 1411 667 Anabaena sp. 90 1 46234 0 species 0 species 1 1647413 744 Anabaena sp. WA102 species 0 1165 1 Anabaena cylindrica 807 1131 Rivulariaceae 1 3 1185 0 family 18 2 0 genus 2 373984 1113 Rivularia 1 1111 2676603 1 no rank 0 species 0 Rivularia sp. PCC 7116 1111 373994 1 no rank 0 1219117 1 617 species 0 1940762 1 Nostocales cyanobacterium HT-58-2 617 family 0 2661849 8 4518 4518 1 Calothrix 8 1186 0 genus 34 32054 1 Calothrix parietina 639 species 0 no rank 0 2619626 6 3845 466 Calothrix sp. NIES-3974 1 2005462 0 species 1 2005469 1014 Calothrix sp. NIES-4071 0 species 0 species 458 Calothrix sp. PCC 7507 1 99598 species 0 2005461 1 Calothrix sp. NIES-4101 831 0 species 507 Calothrix sp. 336/3 1 1337936 Calothrix sp. NIES-2098 569 1954171 1 species 0 1 Hapalosiphonaceae 724 1892263 3 family 0 5 4 genus 0 1190 2 1 Fischerella 719 0 no rank 1 494603 715 715 Fischerella sp. NIES-3754 1 1752063 0 species order 0 98 Synechococcales 1 3302293 1890424 55 5 0 family 5 1213 3156234 Prochloraceae 1 genus 0 161 Prochlorococcus 1 3156229 1218 4 species 0 1219 1 Prochlorococcus marinus 2397976 no rank 0 758092 2627481 2 4166 Prochlorococcus sp. MIT 0801 1 1501269 0 species 753926 Prochlorococcus sp. MIT 0604 1 1501268 0 species 356 1890436 2 family 0 5 genus 0 1152 2 Pseudanabaena 1 356 351 1 2593292 0 no rank 82654 1 Pseudanabaena sp. PCC 7367 351 species 0 143064 1 Synechococcaceae 32 1890426 0 family 37 13034 1 342 genus 0 0 species 1 292566 342 Dactylococcopsis salina Synechococcus 1 139243 1129 26 genus 0 679 188 Synechococcus elongatus 1 32046 0 species 165 Synechococcus lividus 1 33070 0 species 23 2626047 138211 0 no rank species 0 Synechococcus sp. PCC 8807 122 195248 1 species 0 110662 1 Synechococcus sp. CC9605 28393 species 0 1280380 1 Synechococcus sp. KORDI-100 8244 0 species 506 Synechococcus sp. PCC 7502 1 1173263 species 0 Synechococcus sp. WH 8102 18810 84588 1 245 Synechococcus sp. PCC 6312 1 195253 0 species Synechococcus sp. WH 7803 1788 32051 1 species 0 species 0 Synechococcus sp. UTEX 2973 207 1350461 1 0 species 10272 Synechococcus sp. KORDI-52 1 585425 191 Synechococcus sp. NIES-970 1 1827144 0 species species 0 321332 1 Synechococcus sp. JA-2-3B'a(2-13) 140 29410 1 Synechococcus sp. WH 8103 18808 species 0 species 0 Synechococcus sp. RCC307 1153 316278 1 1 1916956 1038 Synechococcus sp. SynAce01 0 species 1 374981 151 Synechococcus sp. PCC 7003 0 species 150 Synechococcus sp. JA-3-3Ab 1 321327 0 species 316279 1 Synechococcus sp. CC9902 942 species 0 species 0 195498 1 Synechococcus sp. PCC 7117 160 Synechococcus sp. CC9311 616 64471 1 species 0 1 166314 29626 Synechococcus sp. WH 8109 0 species 0 species 196 Synechococcus sp. PCC 73109 1 374982 16274 Synechococcus sp. KORDI-49 1 585423 0 species 1 32049 179 Synechococcus sp. PCC 7002 0 species genus 0 46 Cyanobium 1 3281 167375 3 0 no rank 1579 1 2627006 0 species 1 1851505 1579 Cyanobium sp. NIES-981 0 species 1 59930 1656 Cyanobium gracile genus 0 161 146785 1 species 0 Thermosynechococcus elongatus 161 146786 1 family 0 1890428 4 722 genus 0 12 1 Synechocystis 722 1142 4 710 2640012 3 no rank 0 1 1147 228 Synechocystis sp. PCC 6714 0 species 0 species 241 Synechocystis sp. PCC 6803 1 1148 Synechocystis sp. IPPAS B-1465 241 2116702 1 species 0 Leptolyngbyaceae 1 1170 1890438 6 family 0 4 genus 0 19 1 Leptolyngbya 1166 47251 5 3 2650499 891 0 no rank species 0 1080068 1 Leptolyngbya sp. O-77 228 0 species 435 Leptolyngbya sp. PCC 7376 1 111781 0 species 1 1752064 228 Leptolyngbya sp. NIES-3755 0 species 256 Leptolyngbya boryana 1 1184 0 family 1 395 1 Acaryochloridaceae 3 1890429 5 genus 0 155977 2 1 Acaryochloris 394 389 Acaryochloris marina 1 155978 0 species 0 family 254 2 2303730 254 1 Halomicronema 2 170610 0 genus 2 0 species 252 Halomicronema hongdechloris 1 1209493 6 307596 585 Gloeobacteria 1 3 0 class 582 1 Gloeobacterales 5 307595 0 order 3 579 1 Gloeobacteraceae 4 1890422 0 family 10 0 genus 4 569 Gloeobacter 1 3 33071 1 1416614 265 Gloeobacter kilaueensis 0 species 0 species 300 Gloeobacter violaceus 1 33072 45 1301283 20144 0 subclass 9473 1 Chroococcales 26 1118 0 order 29 family 0 3 Cyanobacteriaceae 1 904 1890452 3 2 102234 901 Cyanobacterium 1 2 0 genus 0 species 899 Cyanobacterium aponinum 1 379064 family 0 13 1 Chroococcaceae 3724 1890464 8 1 genus 0 268175 2 1 Chondrocystis 1237 0 no rank 1236 1 2648896 species 0 2005460 1 Chondrocystis sp. NIES-4102 1236 genus 0 1 1 Gloeocapsa 516 102231 2 no rank 0 515 2623012 1 0 species 1 1173026 515 Gloeocapsa sp. PCC 7428 0 genus 13 1958 Geminocystis 1 3 669357 0 no rank 1945 2 2625037 species 0 Geminocystis sp. NIES-3708 998 1615909 1 0 species 1 1617448 947 Geminocystis sp. NIES-3709 family 0 9 Aphanothecaceae 1 3693 1890450 10 genus 0 1175 28070 2 575 2546356 1 species 0 65393 1 Cyanothece sp. PCC 7424 575 strain 0 2546359 1 600 species 0 1 497965 600 Cyanothece sp. PCC 7822 0 strain 838 2546365 2 genus 0 species 0 838 2546366 2 395962 1 Cyanothece sp. PCC 8802 415 strain 0 1 41431 423 Cyanothece sp. PCC 8801 0 strain 0 genus 1 263510 549 0 species 1 2546360 549 strain 0 Cyanothece sp. ATCC 51142 549 43989 1 1 Candidatus Atelocyanobacterium 793 1453359 2 genus 0 5 1 713887 788 Candidatus Atelocyanobacterium thalassa 0 species 92682 2 329 no rank 0 0 genus 2 329 Halothece 1 2 76023 327 2632878 1 no rank 0 0 species 1 65093 327 Halothece sp. PCC 7418 1123 1 Microcystaceae 4 1890449 0 family 3 1125 3 Microcystis 1 1120 13 genus 0 0 no rank 337 1 2643300 0 species 1 1967666 337 Microcystis sp. MC19 0 species 1 1126 770 Microcystis aeruginosa 33 order 0 1150 19 1 Oscillatoriales 10671 0 family 14 282 1 Coleofasciculaceae 3 1892251 6 0 genus 2 63132 268 Geitlerinema 1 0 no rank 262 1 2648775 Geitlerinema sp. PCC 7407 262 1173025 1 species 0 17 family 0 1892254 6 1 Oscillatoriaceae 1571 2 1155738 752 1 Moorea 7 0 genus Moorea producens 745 1155739 1 species 0 19 genus 0 1158 3 1 Oscillatoria 802 0 species 1 482564 420 Oscillatoria nigro-viridis Oscillatoria acuminata 363 118323 1 species 0 28 family 0 1892249 3 1 Cyanothecaceae 251 genus 0 22 1 Cyanothece 223 43988 2 1 2649277 201 0 no rank 395961 1 Cyanothece sp. PCC 7425 201 species 0 0 family 6 595 Gomontiellaceae 1 2 1892255 0 genus 589 1 241421 1 241425 589 Crinalium epipsammum 0 species 7939 Microcoleaceae 1 4 1892252 0 family 5 0 genus 7655 1 1205 1206 1 Trichodesmium erythraeum 7655 species 0 3 genus 0 44471 2 1 Microcoleus 279 0 no rank 1 2642155 276 0 species 1 1173027 276 Microcoleus sp. PCC 7113 order 0 586 1890505 3 11 family 0 1890528 3 Chroococcidiopsidaceae 1 586 genus 0 2 Chroococcidiopsis 1 575 54298 2 54299 1 Chroococcidiopsis thermalis 573 species 0 558 1 1983111 0 no rank 558 cyanobacterium endosymbiont of Epithemia turgida 1 718217 0 species 2608 1 Pleurocapsales 8 52604 0 order 7 family 0 4 1 Dermocarpellaceae 2230 1890498 4 2226 1 Stanieria 3 102115 0 genus 30 1035 Stanieria cyanosphaera 1 102116 0 species 1 2642663 1161 0 no rank 1 1807358 1161 Stanieria sp. NIES-3757 0 species 5 0 family 3 1890500 371 1 Hyellaceae 44474 2 1 Pleurocapsa 366 4 genus 0 0 species 362 Pleurocapsa minor 1 54308 0 phylum 5238 35 1297 Deinococci 1 5238 188787 35 class 0 32 order 0 2762275 3 297 1 0 family 3 332247 297 1 Trueperaceae 6 0 genus 2 332248 296 1 Truepera Truepera radiovictrix 290 332249 1 species 0 0 order 13 2196 Thermales 1 16 68933 2183 1 Thermaceae 15 188786 0 family 20 2 208447 328 1 Oceanithermus 6 0 genus 1 187137 322 Oceanithermus profundus 0 species genus 0 21 Thermus 1 1212 270 8 56957 1 Thermus oshimai 150 species 0 1 456163 135 Thermus parvatiensis 0 species 1 2619321 166 0 no rank species 0 1111069 1 Thermus sp. CCB_US3_UF1 166 species 0 Thermus brockianus 113 56956 1 species 0 37636 1 Thermus scotoductus 107 Thermus thermophilus 383 274 1 species 0 Thermus aquaticus 137 271 1 species 0 1 genus 0 65551 3 1 Meiothermus 406 species 0 Meiothermus ruber 235 277 1 Meiothermus silvanus 170 52022 1 species 0 genus 0 186191 1 217 186192 1 Marinithermus hydrothermalis 217 species 0 47 0 order 15 118964 2713 1 Deinococcales 183710 14 Deinococcaceae 1 2666 4 family 0 2662 Deinococcus 1 13 1298 0 genus 46 species 0 502394 1 Deinococcus gobiensis 306 Deinococcus puniceus 144 1182568 1 species 0 species 0 1768108 1 Deinococcus actinosclerus 220 2623546 1 213 no rank 0 species 0 Deinococcus sp. NW-56 213 2080419 1 species 0 Deinococcus soli Cha et al. 2016 255 1309411 1 1 68909 170 Deinococcus geothermalis 0 species species 0 1182571 1 Deinococcus swuensis 204 432329 1 Deinococcus peraridilitoris 211 species 0 236 Deinococcus proteolyticus 1 55148 0 species 309887 1 Deinococcus maricopensis 300 species 0 Deinococcus deserti 147 310783 1 species 0 210 Deinococcus radiodurans 1 1299 0 species 34377 1 Tenericutes 101 544448 0 phylum 2 91 0 class 97 31969 32604 1 Mollicutes 39 186328 14052 Entomoplasmatales 1 33 0 order 1 Spiroplasmataceae 9849 2131 24 family 0 22 9827 Spiroplasma 1 23 2132 0 genus 118 446 Spiroplasma helicoides 1 216938 0 species Spiroplasma culicicola 557 216935 1 species 0 Spiroplasma sabaudiense 347 216944 1 species 0 0 species 1 362837 719 Spiroplasma cantharicola 205 Spiroplasma mirum 1 2144 0 species 628 Spiroplasma turonicum 1 216946 0 species 216945 1 Spiroplasma syrphidicola 347 species 0 species 0 Spiroplasma floricola 632 216937 1 454 Spiroplasma corruscae 1 216934 0 species 0 species 1 2136 375 Spiroplasma monobiae 0 species 1 2137 296 Spiroplasma apis 1 315358 282 Spiroplasma eriocheiris 0 species 1 216942 669 Spiroplasma litorale 0 species 0 species 1 2139 462 Spiroplasma clarkii 340 Spiroplasma chrysopicola 1 216933 0 species 0 species 1 2145 632 Spiroplasma taiwanense 1 2133 398 Spiroplasma citri 0 species 0 species 210 Spiroplasma atrichopogonis 1 1114980 species 0 216936 1 Spiroplasma diminutum 512 no rank 0 2637901 2 718 0 species 1 1914410 359 Spiroplasma sp. NBRC 100390 0 species 1 1898044 359 Spiroplasma sp. TU-14 47834 1 Spiroplasma kunkelii 480 species 0 11 family 0 33925 14 Entomoplasmataceae 1 4170 1216 Entomoplasma 1 5 46238 0 genus 13 215578 1 Entomoplasma somnilux 344 species 0 species 0 Entomoplasma melaleucae 397 81459 1 species 0 74700 1 Entomoplasma freundtii 137 0 species 325 Entomoplasma luminosum 1 214888 genus 0 56 1 Mesoplasma 2943 46239 8 1 138853 291 Mesoplasma lactucae 0 species 0 species 1 2149 410 Mesoplasma entomophilum Mesoplasma florum 775 2151 1 species 0 Mesoplasma tabanidae 365 219745 1 species 0 267 Mesoplasma syrphidae 1 225999 0 species species 0 Mesoplasma coleopterae 440 324078 1 species 0 216427 1 Mesoplasma chauliocola 339 186329 13 Acholeplasmatales 1 3397 9 order 0 3388 Acholeplasmataceae 1 12 2146 0 family 9 1973 1 Acholeplasma 5 2147 0 genus 18 0 species 1 38986 624 Acholeplasma palmae Acholeplasma laidlawii 460 2148 1 species 0 Acholeplasma oculi 509 35623 1 species 0 362 Acholeplasma brassicae 1 61635 0 species 28 0 genus 6 33926 1406 1 Candidatus Phytoplasma 3 85620 783 0 species group 257 Maize bushy stunt phytoplasma 1 202462 0 species Onion yellows phytoplasma 282 100379 1 species 0 1 229545 244 Aster yellows witches'-broom phytoplasma 0 species 289 85632 1 species group 0 species 0 59748 1 Candidatus Phytoplasma australiense 289 species group 0 85630 1 306 Candidatus Phytoplasma mali 306 37692 1 species 0 44 2085 15064 Mycoplasmatales 1 33 0 order 49 family 0 2092 43 Mycoplasmataceae 1 15031 2129 3 Ureaplasma 1 711 1 genus 0 0 species 384 Ureaplasma parvum 1 134821 Ureaplasma urealyticum 326 2130 1 species 0 138 0 genus 27 2093 9760 1 Mycoplasma 0 species 1 136241 142 Mycoplasma haemocanis species 0 Mycoplasma yeatsii 509 51365 1 0 species 1 984991 254 Mycoplasma parvum 0 species 484 Mycoplasma hyorhinis 1 2100 Mycoplasma dispar 250 86660 1 species 0 0 species 1 2098 550 Mycoplasma hominis 354 1 2683645 0 no rank 1749074 1 Mycoplasma sp. (ex Biomphalaria glabrata) 354 species 0 1 2096 258 Mycoplasma gallisepticum 0 species 656088 3 2671 species group 0 2095 1 Mycoplasma capricolum 737 species 0 0 species 672 Mycoplasma leachii 1 2105 1 2102 1262 Mycoplasma mycoides 0 species 1 2118 577 Mycoplasma mobile 0 species 0 species 1 2104 50 Mycoplasma pneumoniae 0 species 454 Mycoplasma crocodyli 1 50052 1 2099 398 Mycoplasma hyopneumoniae 0 species 0 species 177 Mycoplasma genitalium 1 2097 0 species 1 29554 347 Mycoplasma canadense 2123 1 Mycoplasma putrefaciens 430 species 0 2111 1 Mycoplasma arthritidis 155 species 0 species 0 Mycoplasma ovis 114 171632 1 0 species 1 45362 293 Mycoplasma bovoculi Mycoplasma suis 146 57372 1 species 0 Mycoplasma penetrans 505 28227 1 species 0 species 0 2128 1 Mycoplasma flocculare 246 1 29501 171 Mycoplasma haemofelis 0 species 65123 1 Mycoplasma wenyonii 87 species 0 4511 2767358 12 genus 0 394 Mycoplasma arginini 1 2094 0 species 759 Mycoplasma bovis 1 28903 0 species 432 Mycoplasma agalactiae 1 2110 0 species 0 species 1 2115 406 Mycoplasma fermentans 372 Mycoplasma pulmonis 1 2107 0 species species 0 Mycoplasma canis 455 29555 1 223 Mycoplasma californicum 1 2113 0 species 0 species 246 Mycoplasma synoviae 1 2109 species 0 29553 1 Mycoplasma bovirhinis 256 294 Mycoplasma bovigenitalium 1 2112 0 species 0 species 390 Mycoplasma cynos 1 171284 0 species 284 Mycoplasma pullorum 1 48003 1 2799557 536 0 no rank 1912503 1 536 genus 0 536 2624196 1 no rank 0 1 1541959 536 Candidatus Izimaplasma sp. HR1 0 species 1235 713063 2 no rank 0 species 0 Tenericutes bacterium MZ-XQ 555 1911683 1 0 species 1 1911684 680 Tenericutes bacterium MO-XQ 1 1859062 152 0 no rank 152 262406 1 genus 0 166501 1 Thermobaculum terrenum 152 species 0 phylum 0 3047 200795 38 Anaerolineae 1 350 292625 6 class 0 2 1 Anaerolineales 348 292629 5 order 0 4 0 family 9 344 Anaerolineaceae 1 4 292628 91 1324991 1 no rank 0 1889813 1 Anaerolineaceae bacterium oral taxon 439 91 species 0 genus 0 130 233189 1 Anaerolinea thermophila 130 167964 1 species 0 genus 0 114 2019482 1 species 0 Brevefilum fermentans 114 1986204 1 987 9 32061 0 class 0 order 17 987 1 Chloroflexales 9 32064 suborder 0 436 1508595 4 436 1 Roseiflexaceae 4 1508635 0 family 1 8 0 genus 3 120961 435 Roseiflexus 1 1 120962 216 Roseiflexus castenholzii 0 species no rank 0 211 2609473 1 0 species 1 357808 211 Roseiflexus sp. RS-1 0 suborder 534 4 1508594 family 0 1106 4 534 genus 0 12 1 Chloroflexus 534 1107 4 152260 1 Chloroflexus aggregans 190 species 0 species 0 166 1 Chloroflexus aurantiacus 332 1108 2 1 480224 166 Chloroflexus sp. Y-400-fl 0 strain 1 Dehalococcoidia 628 301297 8 class 0 3 order 0 1202465 4 387 family 0 8 1 Dehalococcoidaceae 387 1202464 4 61434 3 Dehalococcoides 1 379 6 genus 0 86 1 237581 0 no rank 86 Dehalococcoides sp. UCH007 1 1522671 0 species 1 61435 287 Dehalococcoides mccartyi 0 species 0 genus 2 238 Dehalogenimonas 1 3 670486 133 Dehalogenimonas formicexedens 1 1839801 0 species 0 species 1 552810 103 Dehalogenimonas lykanthroporepellens 6 class 0 189775 6 Thermomicrobia 1 431 0 subclass 3 85000 299 299 Sphaerobacterales 1 3 85001 0 order 5 255728 2 294 suborder 0 Sphaerobacteraceae 1 294 85002 2 family 0 5 genus 0 2056 1 289 species 0 2057 1 Sphaerobacter thermophilus 289 0 order 2 126 1 Thermomicrobiales 2 189776 0 family 1 189777 124 499 1 124 genus 0 0 species 1 500 124 Thermomicrobium roseum 1 0 class 4 475962 236 1 Caldilineae 0 order 2 235 1 Caldilineales 3 475963 0 family 233 2 475964 3 genus 0 233191 2 Caldilinea 1 233 species 0 133453 1 Caldilinea aerophila 230 0 class 2 415 Ardenticatenia 1 5 1382928 0 order 9 413 Ardenticatenales 1 4 1382929 0 family 4 404 Ardenticatenaceae 1 3 1382930 genus 0 3 Candidatus Promineofilum 1 400 1988031 2 397 Candidatus Promineofilum breve 1 1806508 0 species 4 67819 286 0 phylum 4 1663419 286 1 Fimbriimonadia 3 0 class 1663425 3 1 Fimbriimonadales 283 4 order 0 family 0 279 1663426 2 1005038 2 1 Fimbriimonas 279 8 genus 0 Fimbriimonas ginsengisoli 271 1005039 1 species 0 201174 639 1 Actinobacteria 177816 12 phylum 0 976 4 1752188 0 no rank 1 1848754 321 Actinobacteria bacterium IMCC19121 0 species species 0 1848756 1 Actinobacteria bacterium IMCC26103 272 1848755 1 Actinobacteria bacterium IMCC26077 233 species 0 1 1848255 150 Actinobacteria bacterium IMCC25003 0 species 589 1760 170120 1 Actinobacteria 532 0 class Catenulisporales 1 1255 414714 4 order 0 3 14 0 family 3 414877 1252 Catenulisporaceae 1 0 genus 14 1238 1 Catenulispora 2 414878 1 304895 1224 Catenulispora acidiphila 0 species 3 622452 528 1 Kineosporiales 1 0 order 2 83778 527 Kineosporiaceae 1 8 0 family genus 0 519 33981 1 519 Kineococcus radiotolerans 1 131568 0 species 45 order 0 85012 15 Streptosporangiales 1 3962 family 0 12 1 Streptosporangiaceae 1922 2004 5 8 genus 0 2000 2 1 Streptosporangium 773 species 0 2001 1 Streptosporangium roseum 765 2 83681 1137 Nonomuraea 1 17 0 genus 0 no rank 1120 1 2593643 1909395 1 Nonomuraea sp. ATCC 55076 1120 species 0 0 family 7 462 1 Thermomonosporaceae 3 2012 6 0 genus 2 2019 455 Thermomonospora 1 2020 1 Thermomonospora curvata 449 species 0 1533 1 Nocardiopsaceae 6 83676 0 family 15 1315 1 Nocardiopsis 4 2013 0 genus 15 0 species 386 Nocardiopsis gilva 1 280236 333 Nocardiopsis alba 1 53437 0 species 581 Nocardiopsis dassonvillei 1 2014 0 species 1 83677 203 0 genus Thermobifida fusca 203 2021 1 species 0 1 order 0 85014 4 Glycomycetales 1 529 23 family 0 85034 3 1 Glycomycetaceae 528 5 0 genus 2 283810 505 1 Stackebrandtia Stackebrandtia nassauensis 500 283811 1 species 0 0 order 5 2236 Actinomycetales 1 17 2037 1 Actinomycetaceae 2231 2049 16 family 0 52 genus 0 74 2050 1 74 Mobiluncus curtisii 1 2051 0 species genus 0 1 Trueperella 1 142 1069494 2 141 Trueperella pyogenes 1 1661 0 species genus 0 52 1 Actinomyces 1661 1654 9 0 species 438 Actinomyces radicidentis 1 111015 species 0 Actinomyces sp. VUL4_3 100 1912795 1 80 Actinomyces pacaensis 1 1852377 0 species 155 Actinomyces oris 1 544580 0 species 1960083 1 Actinomyces gaoshouyii 212 species 0 624 3 2609248 0 no rank species 0 Actinomyces sp. oral taxon 897 168 2081702 1 0 species 1 1851395 201 Actinomyces sp. Chiba101 species 0 712122 1 Actinomyces sp. oral taxon 414 255 genus 0 107 2529408 1 Actinomyces meyeri 107 52773 1 species 0 1 1653174 99 0 genus 0 species 99 Actinotignum schaalii 1 59505 0 genus 96 1 28263 28264 1 Arcanobacterium haemolyticum 96 species 0 82 85011 49823 Streptomycetales 1 73 0 order 0 family 177 49750 1 Streptomycetaceae 81 2062 1 Streptomyces 46549 1883 75 genus 0 1167 54571 1 Streptomyces venezuelae 1228 species 0 Streptomyces violaceusniger 620 68280 1 species 0 1 1437453 481 Streptomyces leeuwenhoekii 0 species 1912 1 Streptomyces hygroscopicus 1298 species 0 0 species 728 Streptomyces vietnamensis 1 362257 432 Streptomyces violaceoruber 1 1935 0 species 0 species 508 Streptomyces sp. S10(2016) 1 1783515 1 1916 541 Streptomyces lividans 0 species 1 33903 610 Streptomyces avermitilis 0 species 1 379067 735 Streptomyces bingchenggensis 0 species 68249 1 Streptomyces pactum 1211 species 0 2 629295 936 0 species group 0 species subgroup 1 1482558 451 451 Streptomyces globisporus 1 1908 0 species species subgroup 0 485 1482596 1 1 1911 485 Streptomyces griseus 0 species 562 Streptomyces gilvosporeus 1 553510 0 species 1 1940 587 Streptomyces albireticuli 0 species species 0 Streptomyces lydicus 1322 47763 1 1 408015 402 Streptomyces xiamenensis 0 species species 0 Streptomyces clavuligerus 474 1901 1 Streptomyces pratensis 396 1169025 1 species 0 1 1930 654 Streptomyces scabiei 0 species species 0 193462 1 Streptomyces niveus 502 498 Streptomyces sp. XZHG99 1 2049881 0 species 1 1889 544 Streptomyces ambofaciens 0 species 0 species 1040 Streptomyces autolyticus 1 75293 Streptomyces lincolnensis 660 1915 1 species 0 0 species 1 1038928 453 Streptomyces xinghaiensis 1 1888 1120 Streptomyces albus 0 species species 0 1355015 1 Streptomyces pluripotens 407 1 42684 493 Streptomyces collinus 0 species 0 species 1 1950 436 Streptomyces peucetius Streptomyces rubrolavendulae 414 285473 1 species 0 515 Streptomyces puniciscabiei 1 164348 0 species 0 species 427 Streptomyces parvulus 1 146923 1914 1 Streptomyces lavendulae 602 species 0 0 species 587 Streptomyces alboflavus 1 67267 species group 0 1477431 2 1547 1029 Streptomyces coelicolor 1 1902 0 species 0 species 518 Streptomyces sampsonii 1 42239 1642299 1 Streptomyces alfalfae 642 species 0 0 species 1 68192 428 Streptomyces cyaneogriseus 0 species 698 Streptomyces formicae 1 1616117 species 0 68570 1 Streptomyces albulus 1332 571 Streptomyces noursei 1 1971 0 species 0 species 631 Streptomyces reticuli 1 1926 Streptomyces chartreusis 544 1969 1 species 0 13398 2593676 24 no rank 0 1 1849967 625 Streptomyces sp. SAT1 0 species species 0 Streptomyces sp. CMB-StM0423 656 2059884 1 species 0 Streptomyces sp. TN58 499 234612 1 1 862751 365 Streptomyces sp. SirexAA-E 0 species 633 Streptomyces sp. CNQ-509 1 444103 0 species 0 species 549 Streptomyces sp. FR-008 1 206662 1961713 1 Streptomyces sp. MOE7 554 species 0 0 species 1 2094021 504 Streptomyces sp. WAC00288 0 species 548 Streptomyces sp. fd1-xmd 1 1812480 Streptomyces sp. PAMC 26508 372 1265601 1 species 0 1 2135430 697 Streptomyces sp. P3 0 species 0 species 1 1984801 584 Streptomyces sp. CLI2509 species 0 1495638 1 Streptomyces sp. M56 676 Streptomyces sp. S8 375 1837283 1 species 0 species 0 Streptomyces sp. RTd22 716 1841249 1 species 0 Streptomyces sp. CCM_MD2014 516 1561022 1 0 species 1 1725411 611 Streptomyces sp. CdTB01 species 0 1649184 1 Streptomyces sp. CFMR 7 471 0 species 664 Streptomyces sp. 769 1 1262452 0 species 1 1972846 596 Streptomyces sp. Sge12 species 0 465541 1 Streptomyces sp. Mg1 511 species 0 Streptomyces sp. Tue 6075 479 1661694 1 0 species 1 1964449 708 Streptomyces sp. 3211 0 species 1 1751294 489 Streptomyces sp. 4F species 0 Streptomyces fulvissimus 473 68202 1 92644 1 Streptomyces malaysiensis 640 species 0 1 1907 451 Streptomyces glaucescens 0 species 0 species 1 29303 520 Streptomyces cattleya Streptomyces griseochromogenes 547 68214 1 species 0 species 0 38300 1 Streptomyces pristinaespiralis 537 5 2063 3024 Kitasatospora 1 21 0 genus Kitasatospora albolonga 902 68173 1 species 0 species 0 2066 1 Kitasatospora setae 796 0 no rank 1 2633591 701 701 Kitasatospora sp. MMS16-BH015 1 2018025 0 species 0 species 604 Kitasatospora aureofaciens 1 1894 order 0 156 1 Corynebacteriales 40229 85007 161 697024 1 77 no rank 0 77 1847725 1 genus 0 species 0 Lawsonella clevelandensis 77 1528099 1 901 Tsukamurellaceae 1 4 85028 0 family 13 0 genus 10 888 1 Tsukamurella 3 2060 1 2061 319 Tsukamurella paurometabola 0 species Tsukamurella tyrosinosolvens 559 57704 1 species 0 0 family 4 628 1 Dietziaceae 4 85029 624 1 Dietzia 3 37914 0 genus 13 no rank 0 2617939 1 379 0 species 1 712270 379 Dietzia sp. oral taxon 368 species 0 Dietzia timorensis 232 499555 1 Segniliparaceae 1 184 316606 2 family 0 2 286801 1 182 genus 0 0 species 182 Segniliparus rotundus 1 286802 1762 57 Mycobacteriaceae 1 16881 37 family 0 555 2 1073531 0 genus 0 species 294 Mycobacterium sinense 1 875328 Mycobacterium terrae 261 1788 1 species 0 670516 5 1557 genus 0 1774 1 Mycobacterium chelonae 193 species 0 species 0 Mycobacterium saopaulense 202 1578165 1 species 0 83262 1 Mycobacterium immunogenum 231 species 0 Mycobacterium stephanolepidis 187 1520670 1 0 species 1 36809 744 Mycobacterium abscessus 34 1763 9590 1 Mycobacterium 582 0 genus species 0 Mycobacterium liflandii 240 261524 1 69 Mycobacterium leprae 1 1769 0 species 4 77643 798 0 species group 617 1 Mycobacterium tuberculosis 3 1773 0 species 220 0 biotype 203 Mycobacterium bovis 1 1765 33894 1 Mycobacterium africanum 194 biotype 0 Mycobacterium canettii 181 78331 1 species 0 0 species 289 Mycobacterium kansasii 1 1768 0 species 1 29311 155 Mycobacterium haemophilum 2249310 1 269 species group 0 Mycobacterium shigaense 269 722731 1 species 0 species 0 Mycobacterium ulcerans 292 1809 1 0 species 1 482462 403 Mycobacterium dioxanotrophicus 2642494 13 3735 no rank 0 1 1561223 170 Mycobacterium sp. QIA-37 0 species Mycobacterium sp. EPa45 292 1545728 1 species 0 1 1682113 326 Mycobacterium sp. YC-RL4 0 species 1920667 1 Mycobacterium sp. WY10 343 species 0 285 Mycobacterium sp. VKM Ac-1817D 1 1273687 0 species 1879023 1 Mycobacterium sp. djl-10 338 species 0 species 0 Mycobacterium sp. JLS 303 164757 1 1 164756 305 Mycobacterium sp. MCS 0 species 1570328 1 Mycobacterium sp. NRRL B-3805 239 species 0 0 species 1 212767 378 Mycobacterium sp. JS623 0 species 318 Mycobacterium sp. KMS 1 189918 0 species 1 1168287 104 Mycobacterium sp. MOTT36Y 1 2051552 334 Mycobacterium sp. PYR15 0 species 341 Mycobacterium marinum 1 1781 0 species 8 120793 2417 0 species group species 0 Mycobacterium colombiense 324 339268 1 0 species 249 Mycobacterium marseillense 1 701042 177 species 0 1767 4 Mycobacterium intracellulare 1 709 Mycobacterium chimaera 264 222805 1 subspecies 0 0 subspecies 1 35617 114 Mycobacterium indicus pranii 0 subspecies 1 1203599 154 Mycobacterium yongonense Mycobacterium paraintracellulare 111 1138383 1 species 0 1764 1 Mycobacterium avium 1024 species 0 13 1866885 4971 0 genus 1797 1 Mycobacterium thermoresistibile 341 species 0 species 0 1795 1 Mycobacterium neoaurum 239 0 species 1 134601 493 Mycobacterium goodii Mycobacterium phlei 416 1771 1 species 0 36814 1 Mycobacterium rhodesiae 313 species 0 species 0 1766 1 Mycobacterium fortuitum 271 0 species 347 Mycobacterium vanbaalenii 1 110539 0 species 1 758802 348 Mycobacterium litorale 0 species 1 1810 444 Mycobacterium vaccae 1800 1 Mycobacterium chubuense 463 species 0 Mycobacterium gilvum 458 1804 1 species 0 species 0 1772 1 Mycobacterium smegmatis 456 0 species 1 1791 382 Mycobacterium aurum 0 genus 2 171 1 Hoyosella 2 697025 species 0 639313 1 Hoyosella subflava 169 7 0 family 9 85026 2287 Gordoniaceae 1 0 genus 41 2280 1 Gordonia 8 2053 0 species 1 2054 260 Gordonia bronchialis 1 84595 358 Gordonia polyisoprenivorans 0 species 0 no rank 606 2 2657482 358 Gordonia sp. KTR9 1 337191 0 species 248 Gordonia sp. YC-JH1 1 2059875 0 species species 0 Gordonia terrae 348 2055 1 1 1136941 370 Gordonia phthalatica 0 species 1004901 1 Gordonia iterans 297 species 0 27 family 0 1653 52 Corynebacteriaceae 1 7080 51 1716 7053 Corynebacterium 1 126 0 genus 0 species 126 Corynebacterium aquilae 1 203263 Corynebacterium cystitidis 125 35757 1 species 0 0 species 1 191493 237 Corynebacterium sphenisci 133 Corynebacterium doosanense 1 1121358 0 species species 0 Corynebacterium imitans 111 156978 1 species 0 38305 1 Corynebacterium vitaeruminis 238 species 0 Corynebacterium resistens 84 258224 1 181 2624378 2 no rank 0 species 0 Corynebacterium sp. ATCC 6931 68 1487956 1 1 702967 113 Corynebacterium sp. NML98-0116 0 species 1404244 1 Corynebacterium glyciniphilum 172 species 0 1 575200 210 Corynebacterium maris 0 species species 0 1718 1 Corynebacterium glutamicum 304 1230998 1 Corynebacterium frankenforstense 297 species 0 161879 1 Corynebacterium kroppenstedtii 47 species 0 161896 1 Corynebacterium camporealensis 75 species 0 0 species 1 187491 102 Corynebacterium glaucum species 0 1223514 1 Corynebacterium humireducens 286 species 0 92706 1 [Brevibacterium] flavum 104 0 species 88 Corynebacterium casei 1 160386 Corynebacterium epidermidicanis 62 1050174 1 species 0 1 161899 66 Corynebacterium singulare 0 species species 0 65058 1 Corynebacterium ulcerans 89 0 species 107 Corynebacterium deserti 1 1408191 species 0 Corynebacterium flavescens 79 28028 1 571915 1 Corynebacterium mustelae 93 species 0 166 Corynebacterium testudinoris 1 136857 0 species species 0 Corynebacterium pseudotuberculosis 79 1719 1 1652495 1 Corynebacterium crudilactis 127 species 0 Corynebacterium simulans 102 146827 1 species 0 1 152794 140 Corynebacterium efficiens 0 species Corynebacterium lactis 105 1231000 1 species 0 0 species 192 Corynebacterium halotolerans 1 225326 species 0 1721 1 Corynebacterium callunae 85 1 38289 142 Corynebacterium jeikeium 0 species 1717 1 Corynebacterium diphtheriae 165 species 0 0 species 113 Corynebacterium ureicelerivorans 1 401472 69 Corynebacterium ammoniagenes 1 1697 0 species 1 191610 84 Corynebacterium atypicum 0 species 0 species 1 42817 88 Corynebacterium argentoratense 0 species 120 Corynebacterium urealyticum 1 43771 43770 1 Corynebacterium striatum 195 species 0 0 species 1 1705 79 Corynebacterium stationis 374 Corynebacterium uterequi 1 1072256 0 species 234 Corynebacterium variabile 1 1727 0 species 99 Corynebacterium phocae 1 161895 0 species species 0 349751 1 Corynebacterium marinum 192 0 species 1 35755 165 Corynebacterium kutscheri 138 Corynebacterium falsenii 1 108486 0 species 75 Corynebacterium aurimucosum 1 169292 0 species species 0 89154 1 Corynebacterium terpenotabidum 183 12035 Nocardiaceae 1 31 85025 0 family 64 1 Rhodococcus 8296 1827 23 genus 0 236 3377 12 192944 0 no rank species 0 1653478 1 Rhodococcus sp. PBTS 1 325 1 1033922 482 Rhodococcus sp. WB1 0 species 0 species 1 1807790 193 Rhodococcus sp. BH4 1045808 1 Rhodococcus sp. YL-1 213 species 0 1 1570939 337 Rhodococcus sp. 2G 0 species species 0 1564114 1 Rhodococcus sp. B7740 268 species 0 Rhodococcus sp. PBTS 2 204 1653479 1 1 1805827 431 Rhodococcus sp. MTM3W5.2 0 species species 0 1723645 1 Rhodococcus sp. 008 217 1727214 1 Rhodococcus sp. H-CA8f 196 species 0 species 0 935199 1 Rhodococcus sp. p52 377 134 Rhodococcus sp. WMMA185 1 679318 0 species 1 1828 267 Rhodococcus fascians 0 species 0 species 1 43767 354 Rhodococcus hoagii 0 species 1 1833 352 Rhodococcus erythropolis 0 species 469 Rhodococcus ruber 1 1830 Rhodococcus rhodochrous 407 1829 1 species 0 Rhodococcus aetherivorans 478 191292 1 species 0 37919 1 Rhodococcus opacus 1209 species 0 species 0 132919 1 Rhodococcus jostii 480 448 Rhodococcus pyridinivorans 1 103816 0 species 219 Rhodococcus qingshengii 1 334542 0 species 62 genus 0 1817 7 1 Nocardia 3675 1 37330 473 Nocardia nova 0 species Nocardia seriolae 412 37332 1 species 0 0 species 1 455432 480 Nocardia terpenica 37329 1 Nocardia farcinica 524 species 0 736 Nocardia cyriacigeorgica 1 135487 0 species species 0 Nocardia brasiliensis 988 37326 1 1643683 4 Acidothermales 1 257 2 order 0 3 family 0 85032 3 1 Acidothermaceae 255 1 Acidothermus 252 28048 2 genus 0 9 species 0 Acidothermus cellulolyticus 243 28049 1 3062 1 Bifidobacteriales 25 85004 0 order 14 31 0 family 24 31953 3048 Bifidobacteriaceae 1 1 0 genus 2 2701 381 Gardnerella 1 species 0 Gardnerella vaginalis 380 2702 1 196081 1 64 genus 0 78259 1 Scardovia inopinata 64 species 0 0 genus 93 1 196082 93 Parascardovia denticolens 1 78258 0 species 19 1678 2479 1 Bifidobacterium 25 0 genus 2 1686 185 Bifidobacterium catenulatum 1 83 0 species 102 Bifidobacterium kashiwanohense 1 630129 0 subspecies species 0 Bifidobacterium angulatum 103 1683 1 1 1681 188 Bifidobacterium bifidum 0 species 72 Bifidobacterium asteroides 1 1684 0 species species 0 Bifidobacterium dentium 102 1689 1 1 1680 101 Bifidobacterium adolescentis 0 species 0 species 209 Bifidobacterium breve 1 1685 57 Bifidobacterium coryneforme 1 1687 0 species species 0 Bifidobacterium longum 322 216816 1 141 Bifidobacterium animalis 1 28025 0 species 70 Bifidobacterium thermophilum 1 33905 0 species 1 638619 149 Bifidobacterium actinocoloniiforme 0 species 0 species 1 28026 78 Bifidobacterium pseudocatenulatum Bifidobacterium pseudolongum 200 1694 1 species 0 species 0 1691 1 Bifidobacterium indicum 65 species 0 35760 1 Bifidobacterium choerinum 263 158787 1 Bifidobacterium scardovii 149 species 0 366 2 1643818 0 no rank 6 genus 0 147067 2 1 Thermobispora 366 species 0 Thermobispora bispora 360 2006 1 18 order 0 85010 41 Pseudonocardiales 1 16805 40 2070 16787 Pseudonocardiaceae 1 159 0 family 0 genus 17 1364 Actinosynnema 1 3 40566 Actinosynnema mirum 709 40567 1 species 0 species 0 Actinosynnema pretiosum 638 42197 1 genus 0 10 1 Alloactinosynnema 517 674734 2 1 2636053 507 0 no rank 507 Alloactinosynnema sp. L-07 1 1653480 0 species 0 genus 87 4491 1 Pseudonocardia 8 1847 705 Pseudonocardia dioxanivorans 1 240495 0 species 3699 6 2619320 0 no rank 0 species 1 1096868 583 Pseudonocardia sp. EC080625-04 species 0 Pseudonocardia sp. HH130630-07 632 1690815 1 Pseudonocardia sp. HH130629-09 550 1641402 1 species 0 0 species 635 Pseudonocardia sp. EC080610-09 1 1688404 Pseudonocardia sp. EC080619-01 625 1096856 1 species 0 445576 1 Pseudonocardia sp. AL041005-10 674 species 0 2 1835 702 1 Saccharopolyspora 3 0 genus 0 species 699 Saccharopolyspora erythraea 1 1836 10 0 genus 2 43356 515 Kutzneria 1 0 species 1 43357 505 Kutzneria albida 0 genus 3 385 1 Prauserella 2 142577 1 530584 382 Prauserella marina 0 species 165301 2 Lentzea 1 732 4 genus 0 728 Lentzea guizhouensis 1 1586287 0 species 7 1813 4192 Amycolatopsis 1 75 0 genus 0 species 757 Amycolatopsis mediterranei 1 33910 species 0 31958 1 Amycolatopsis orientalis 1008 1141 2 2618356 0 no rank 0 species 1 1896961 569 Amycolatopsis sp. AA4 0 species 572 Amycolatopsis sp. BJA-103 1 1911175 0 species 1 208439 606 Amycolatopsis japonica 0 species 605 Amycolatopsis methanolica 1 1814 0 genus 1 1851 300 species 0 1852 1 Saccharomonospora viridis 300 9 0 genus 2 2071 698 1 Saccharothrix species 0 103731 1 Saccharothrix espanaensis 689 65496 6 Actinoalloteichus 1 2093 37 genus 0 845 2 2644606 0 no rank species 0 1612551 1 Actinoalloteichus sp. GBA129-24 408 437 Actinoalloteichus sp. AHMU CJ021 1 2072503 0 species 0 species 316 Actinoalloteichus hymeniacidonis 1 340345 species 0 Actinoalloteichus hoggarensis 410 1470176 1 485 Actinoalloteichus sp. ADI127-7 1 1612552 0 species 1 Kibdelosporangium 639 2029 2 genus 0 3 species 0 Kibdelosporangium phytohabitans 636 860235 1 order 0 6 1 Geodermatophilales 1630 1643682 8 49 0 family 7 85030 1624 1 Geodermatophilaceae 0 genus 2 594 1 Modestobacter 2 88138 Modestobacter marinus 592 477641 1 species 0 1 genus 0 38501 2 1 Blastococcus 437 0 species 1 138336 436 Blastococcus saxobsidens 4 genus 0 1860 2 1 Geodermatophilus 544 1861 1 Geodermatophilus obscurus 540 species 0 1 Propionibacteriales 6678 85009 33 order 0 41 family 0 40 Nocardioidaceae 1 3602 85015 13 28 0 genus 2 182639 622 1 Kribbella Kribbella flavida 594 182640 1 species 0 1 Nocardioides 1457 1839 4 genus 0 33 0 no rank 1 2615069 573 0 species 1 196162 573 Nocardioides sp. JS614 Nocardioides sp. 78 334 2045452 1 species 0 Nocardioides dokdonensis 517 450734 1 species 0 7 genus 0 2044 2 Pimelobacter 1 720 1 2045 713 Pimelobacter simplex 0 species 315 1 Micropruina 2 116071 0 genus 2 species 0 75385 1 Micropruina glycogenica 313 2 genus 0 2040 2 Aeromicrobium 1 448 0 species 446 Aeromicrobium erythreum 1 2041 3035 Propionibacteriaceae 1 19 31957 0 family 54 0 genus 207 1 2801844 207 Pseudopropionibacterium propionicum 1 1750 0 species 1 Acidipropionibacterium 376 1912215 2 genus 0 7 Acidipropionibacterium acidipropionici 369 1748 1 species 0 0 genus 273 1 29404 0 species 273 Microlunatus phosphovorus 1 29405 2 0 genus 4 1912216 447 1 Cutibacterium 1 33011 134 Cutibacterium granulosum 0 species 0 species 161 Cutibacterium acnes 1 1747 1 33010 150 Cutibacterium avidum 0 species 0 genus 1 92 Propionimicrobium 1 2 203133 2633994 1 91 no rank 0 1871034 1 Propionimicrobium sp. Marseille-P3275 91 species 0 0 genus 1 431 Propionibacterium 1 3 1743 1744 1 Propionibacterium freudenreichii 354 species 0 no rank 0 2608905 1 76 0 species 1 671223 76 Propionibacterium sp. oral taxon 193 genus 0 17 Tessaracoccus 1 1155 72763 5 0 no rank 1 2635419 301 0 species 301 Tessaracoccus sp. T2.5-30 1 1909732 Tessaracoccus aquimaris 310 1332264 1 species 0 0 species 256 Tessaracoccus flavus 1 1610493 0 species 271 Tessaracoccus flavescens 1 399497 0 order 2 255 1 Actinopolysporales 4 622450 253 1 Actinopolysporaceae 3 622451 0 family 6 0 genus 1 247 1 Actinopolyspora 2 1849 Actinopolyspora erythraea 246 414996 1 species 0 order 0 11 1 Frankiales 2791 85013 7 2780 1 Frankiaceae 6 74712 0 family 37 Frankia 1 2743 1854 5 genus 0 38 species 0 Frankia inefficax 827 298654 1 1 106370 439 Frankia casuarinae 0 species 1859 1 Frankia alni 803 species 0 2632575 1 636 no rank 0 1 298653 636 Frankia sp. EAN1pec 0 species 52018 1 438 no rank 0 1 1650658 438 Actinobacteria bacterium IMCC26256 0 species 444 1643684 3 order 0 6 0 family 3 85031 444 Nakamurellaceae 1 2 53460 438 1 Nakamurella 6 0 genus 432 Nakamurella multipartita 1 53461 0 species 7263 Micromonosporales 1 20 85008 0 order 24 family 0 107 Micromonosporaceae 1 7239 28056 19 84593 1 Verrucosispora 6 genus 0 31 genus 0 1873 4 1 Micromonospora 1665 species 0 1003110 1 Verrucosispora maris 467 no rank 0 591 2617518 1 648999 1 Micromonospora sp. L5 591 species 0 576 Micromonospora aurantiaca 1 47850 0 species 1 Salinispora 602 168694 3 genus 0 15 0 species 293 Salinispora tropica 1 168695 1 168697 294 Salinispora arenicola 0 species 4 673534 1571 1 Plantactinospora 34 0 genus 1537 3 2631981 0 no rank 0 species 545 Plantactinospora sp. BB1 1 2071627 2024580 1 Plantactinospora sp. KBS50 458 species 0 2108470 1 Plantactinospora sp. BC1 534 species 0 53 0 genus 6 1865 3288 1 Actinoplanes 0 no rank 3 2626549 1883 649831 1 Actinoplanes sp. N902-109 613 species 0 species 0 134676 1 Actinoplanes sp. SE50/110 635 0 species 1 2033844 635 Actinoplanes sp. SE50 1 196914 645 Actinoplanes friuliensis 0 species 1 1866 707 Actinoplanes missouriensis 0 species 27630 Micrococcales 1 142 85006 0 order 182 14 family 0 85020 11 Dermabacteraceae 1 2192 5 genus 0 36739 2 1 Dermabacter 116 0 species 1 1630135 111 Dermabacter vaginalis 6 43668 1928 1 Brachybacterium 21 0 genus 345 Brachybacterium ginsengisoli 1 1331682 0 species species 0 2017484 1 Brachybacterium sp. VM2412 551 0 species 311 Brachybacterium sp. VR2415 1 2017485 1 2623841 337 0 no rank Brachybacterium sp. P6-10-X1 337 1903186 1 species 0 43669 1 Brachybacterium faecium 363 species 0 0 genus 18 134 1 Devriesea 2 472568 1 472569 116 Devriesea agamarum 0 species 1635 1 Intrasporangiaceae 9 85021 0 family 17 2 267408 418 1 Arsenicicoccus 5 0 genus 0 no rank 413 1 2663846 413 Arsenicicoccus sp. oral taxon 190 1 1658671 0 species 1 Janibacter 451 53457 2 genus 0 20 1 857417 431 Janibacter indicus 0 species 2 genus 0 53357 2 1 Intrasporangium 334 53358 1 Intrasporangium calvum 332 species 0 1 0 genus 2 265976 415 1 Serinicoccus 414 Serinicoccus sp. JLT9 1 1758689 0 species 2 577468 113 0 no rank 2038 2 Tropheryma 1 113 1 genus 0 1 2039 112 Tropheryma whipplei 0 species 1761 1 Cellulomonadaceae 6 85016 0 family 3 1707 5 Cellulomonas 1 1758 31 genus 0 484 Cellulomonas flavigena 1 1711 0 species no rank 0 400 2620175 1 400 Cellulomonas sp. PSBB021 1 2003551 0 species 1 11 377 Cellulomonas gilvus 0 species 466 Cellulomonas fimi 1 1708 0 species 1 Sanguibacteraceae 451 145360 3 family 0 2 genus 0 6 Sanguibacter 1 449 60919 2 443 Sanguibacter keddieii 1 60920 0 species 2 0 family 2 85018 152 Dermatophilaceae 1 genus 0 1862 1 150 0 species 1 1863 150 Dermatophilus congolensis 0 family 2 85019 405 genus 0 7 Brevibacterium 1 405 1696 2 0 species 1 1703 398 Brevibacterium linens 0 family 13 2380 1 Promicromonosporaceae 9 85017 186188 2 Xylanimonas 1 430 9 genus 0 species 0 186189 1 Xylanimonas cellulosilytica 421 19 0 genus 3 157920 984 Cellulosimicrobium 1 469 2624466 1 no rank 0 469 Cellulosimicrobium sp. TH-20 1 1980001 0 species 1710 1 Cellulosimicrobium cellulans 496 species 0 19 0 genus 3 254250 953 1 Isoptericola 1 139208 445 Isoptericola variabilis 0 species Isoptericola dokdonensis 489 372663 1 species 0 48 85023 10980 1 Microbacteriaceae 119 0 family 1564 1 Clavibacter 6 1573 0 genus 46 0 species 293 1518 1 Clavibacter michiganensis 5 28447 1 31964 296 Clavibacter sepedonicus 0 subspecies 1 33014 298 Clavibacter insidiosus 0 subspecies 0 subspecies 283 Clavibacter nebraskensis 1 31963 0 subspecies 348 Clavibacter capsici 1 1874630 239 1 Microcella 2 337004 0 genus 4 species 0 279828 1 Microcella alkaliphila 235 1 Cryobacterium 533 69578 3 genus 0 14 267 Cryobacterium arcticum 1 670052 0 species 0 no rank 252 1 2649013 species 0 Cryobacterium sp. LW097 252 1978566 1 0 genus 1 1705353 93 93 Aurantimicrobium minutum 1 708131 0 species 0 genus 1 555 Frondihabitans 1 2 447237 554 2626248 1 no rank 0 Frondihabitans sp. PAMC 28766 554 1795630 1 species 0 298 1655488 3 no rank 0 298 1655489 3 clade 0 3 529883 298 1 Rhodoluna 3 0 genus 529884 1 Rhodoluna lacicola 151 species 0 1 535712 144 Candidatus Rhodoluna planktonica 0 species 33882 14 1 Microbacterium 4177 70 genus 0 0 no rank 8 2609290 2543 Microbacterium sp. TPU 3598 265 1938334 1 species 0 species 0 1916917 1 Microbacterium sp. 1.5R 299 0 species 278 Microbacterium sp. PAMC 28756 1 1795053 0 species 1 2103230 270 Microbacterium sp. str. 'China' 1714373 1 Microbacterium sp. No. 7 552 species 0 0 species 1 1906742 342 Microbacterium sp. BH-3-3-3 0 species 261 Microbacterium sp. XT11 1 367477 0 species 1 1696072 276 Microbacterium sp. CGR1 36805 1 Microbacterium aurum 306 species 0 1 84292 286 Microbacterium chocolatum 0 species species 0 Microbacterium hominis 348 162426 1 Microbacterium paludicola 304 300019 1 species 0 2033 1 Microbacterium testaceum 320 species 0 367 1759331 1 genus 0 species 0 Cnuibacter physcomitrellae 367 1619308 1 2 genus 0 33877 2 Agromyces 1 473 471 Agromyces aureus 1 453304 0 species 4 2034 1015 1 Curtobacterium 16 0 genus 1 69373 326 Curtobacterium pusillum 0 species no rank 0 257496 2 673 348 Curtobacterium sp. BH-2-1-1 1 1905847 0 species 0 species 325 Curtobacterium sp. MR_MD2014 1 1561023 Pontimonas 1 83 1434032 2 genus 0 1 1159327 1 Pontimonas salivibrio 82 species 0 genus 0 2 Rathayibacter 1 433 33886 3 Rathayibacter toxicus 126 145458 1 species 0 0 species 1 33888 305 Rathayibacter tritici 518733 2 1 Microterricola 370 2 genus 0 0 species 368 Microterricola viridarii 1 412690 5 0 genus 2 110932 661 1 Leifsonia 656 Leifsonia xyli 1 1575 0 species 0 family 59 5822 Micrococcaceae 1 37 1268 0 genus 1 1868332 111 species 0 556325 1 Neomicrococcus aestuarii 111 12 0 genus 4 1742993 625 1 Pseudarthrobacter species 0 Pseudarthrobacter chlorophenolicus 212 85085 1 177 Pseudarthrobacter sulfonivorans 1 121292 0 species species 0 361575 1 Pseudarthrobacter phenanthrenivorans 224 234 1269 1 genus 0 234 Micrococcus luteus 1 1270 0 species 0 genus 88 1 2078575 1 1618207 88 Arthrobacter sp. IHBB 11108 0 species 32207 2 242 genus 0 1 2047 84 Rothia dentocariosa 0 species 43675 1 Rothia mucilaginosa 158 species 0 0 genus 87 2894 Arthrobacter 1 15 1663 656366 1 Arthrobacter alpinus 239 species 0 0 no rank 12 235627 2325 Arthrobacter sp. Rue61a 88 1118963 1 species 0 1 1357915 239 Arthrobacter sp. QXT-31 0 species 1 2079227 334 Arthrobacter sp. PGP41 0 species 0 species 1 1704044 262 Arthrobacter sp. ERGS1:01 212 Arthrobacter sp. YC-RL1 1 1652545 0 species species 0 Arthrobacter sp. ATCC 21022 135 1771959 1 0 species 1 290399 204 Arthrobacter sp. FB24 0 species 1 2020486 161 Arthrobacter sp. YN 1 1494608 162 Arthrobacter sp. PAMC 25486 0 species 1690248 1 Arthrobacter sp. LS16 187 species 0 Arthrobacter sp. U41 197 1849032 1 species 0 0 species 1 1806905 144 Arthrobacter sp. ZXY-2 0 species 1 37928 243 Arthrobacter crystallopoietes genus 0 7 Kocuria 1 771 57493 4 0 species 1 446860 352 Kocuria flava species 0 Kocuria rhizophila 165 72000 1 0 species 1 71999 247 Kocuria palustris Paenarthrobacter 1 137 1742992 2 genus 0 1 136 Paenarthrobacter aurescens 1 43663 0 species 4 genus 0 596707 2 1 Sinomonas 391 species 0 37927 1 Sinomonas atrocyanea 387 1645 2 Renibacterium 1 79 1 genus 0 1646 1 Renibacterium salmoninarum 78 species 0 genus 0 2 1 Glutamicibacter 191 1742989 2 256701 1 Glutamicibacter arilaitensis 189 species 0 1 Dermacoccaceae 973 145357 7 family 0 5 0 genus 8 429 1 Luteipulveratus 2 745364 species 0 571913 1 Luteipulveratus mongoliensis 421 3 0 genus 2 57499 212 Kytococcus 1 Kytococcus sedentarius 209 1276 1 species 0 genus 0 2 Dermacoccus 1 327 57495 2 1 1274 325 Dermacoccus nishinomiyaensis 0 species family 0 2 1 Beutenbergiaceae 505 125316 3 503 1 Beutenbergia 2 84756 0 genus 9 0 species 1 84757 494 Beutenbergia cavernae 85022 2 79 family 0 2 43673 79 1 Jonesia 1 0 genus species 0 Jonesia denitrificans 78 43674 1 12 2039638 3407 Candidatus Nanopelagicales 1 12 0 order 3395 11 2162846 0 family 622681 7 Candidatus Planktophila 1 1728 18 genus 0 species 0 1884905 1 Candidatus Planktophila versatilis 260 1884913 1 Candidatus Planktophila lacus 290 species 0 species 0 1884914 1 Candidatus Planktophila dulcis 309 339 Candidatus Planktophila vernalis 1 1884907 0 species 171 Candidatus Planktophila sulfonica 1 1884904 0 species 0 species 341 Candidatus Planktophila limnetica 1 573600 14 genus 0 2039639 4 1 Candidatus Nanopelagicus 1667 1884915 1 Candidatus Nanopelagicus hibericus 462 species 0 604 Candidatus Nanopelagicus abundans 1 1884916 0 species 1 1884634 587 Candidatus Nanopelagicus limnes 0 species 6 84995 538 1 Rubrobacteria 2 0 class 84996 5 Rubrobacterales 1 536 16 order 0 family 0 7 Rubrobacteraceae 1 520 84997 4 42255 3 Rubrobacter 1 513 5 genus 0 0 species 249 Rubrobacter radiotolerans 1 42256 1 49319 259 Rubrobacter xylanophilus 0 species 5 0 class 27 84998 3028 Coriobacteriia 1 17 0 order 12 84999 1100 1 Coriobacteriales 6 1643824 735 1 Atopobiaceae 13 0 family 133925 4 Olsenella 1 545 5 genus 0 Olsenella sp. Marseille-P2300 211 1805478 1 species 0 species 0 Olsenella uli 167 133926 1 0 no rank 162 1 2638792 0 species 1 712411 162 Olsenella sp. oral taxon 807 177 2767353 1 genus 0 Atopobium parvulum 177 1382 1 species 0 3 family 0 84107 5 1 Coriobacteriaceae 348 0 no rank 1 84113 152 1531429 1 Coriobacteriaceae bacterium 68-1-3 152 species 0 2 0 genus 2 102106 111 1 Collinsella 0 species 109 Collinsella aerofaciens 1 74426 0 genus 82 1 33870 1 33871 82 Coriobacterium glomerans 0 species order 0 18 1 Eggerthellales 1923 1643822 14 family 0 35 Eggerthellaceae 1 1905 1643826 13 1 1981050 289 0 genus 0 species 289 Phoenicibacter massiliensis 1 1944646 102 84162 1 genus 0 84163 1 Cryptobacterium curtum 102 species 0 644652 3 1 Gordonibacter 584 23 genus 0 0 species 261 Gordonibacter massiliensis 1 1841863 300 Gordonibacter urolithinfaciens 1 1335613 0 species 1 0 genus 3 84111 483 1 Eggerthella 0 no rank 1 2648737 137 1 502558 137 Eggerthella sp. YY7918 0 species 345 Eggerthella lenta 1 84112 0 species genus 0 3 1 Adlercreutzia 165 447020 2 0 species 1 446660 162 Adlercreutzia equolifaciens 129 84108 1 genus 0 1 84110 129 Slackia heliotrinireducens 0 species 0 genus 118 1 79603 79604 1 Denitrobacterium detoxificans 118 species 0 7 84992 1767 1 Acidimicrobiia 1 0 class 0 order 15 1766 Acidimicrobiales 1 6 84993 2448023 2 1287 family 0 2 682522 1287 1 Ilumatobacter 9 0 genus 1278 Ilumatobacter coccineus 1 467094 0 species Acidimicrobiaceae 1 464 84994 3 family 0 16 448 1 Acidimicrobium 2 53634 0 genus 18 0 species 1 53635 430 Acidimicrobium ferrooxidans 5 1497346 1375 1 Thermoleophilia 2 0 class 4 588673 1373 1 Solirubrobacterales 24 0 order 320583 3 Conexibacteraceae 1 1349 10 family 0 1 Conexibacter 1339 191494 2 genus 0 10 Conexibacter woesei 1329 191495 1 species 0 phylum 0 69 Firmicutes 1 243852 1239 681 0 no rank 600 1 84086 0 species 600 endosymbiont 'TC1' of Trimyema compressum 1 243899 0 class 18 4076 Tissierellia 1 18 1737404 13 0 order 15 1737405 3677 Tissierellales 1 family 0 5 Peptoniphilaceae 1 2678 1570339 11 409 1 Peptoniphilus 2 162289 0 genus 3 406 1 2637196 0 no rank species 0 Peptoniphilus sp. ING2-D1G 406 1912856 1 1161127 1 66 genus 0 1 1852373 66 Murdochiella vaginalis 0 species 2 150022 603 Finegoldia 1 2 0 genus Finegoldia magna 601 1260 1 species 0 genus 0 1 1 Anaerococcus 774 165779 3 Anaerococcus prevotii 402 33034 1 species 0 1870984 1 Anaerococcus mediterraneensis 371 species 0 821 Parvimonas 1 2 543311 0 genus 2 819 Parvimonas micra 1 33033 0 species 2042895 3 1 Gottschalkiaceae 986 7 family 0 2 genus 0 1505664 2 1 Gottschalkia 979 species 0 Gottschalkia acidurici 977 1556 1 0 no rank 381 2 1737407 genus 0 2 Ezakiella 1 381 1582879 2 0 species 379 Ezakiella massiliensis 1 1852374 0 class 13 3923 Negativicutes 1 26 909932 1843488 3 239 order 0 6 0 family 3 909930 239 Acidaminococcaceae 1 2 904 233 0 genus 905 1 Acidaminococcus fermentans 145 species 0 Acidaminococcus intestini 88 187327 1 species 0 13 909929 2521 Selenomonadales 1 20 0 order family 0 1 1 Sporomusaceae 1224 1843490 4 genus 0 2 1 Pelosinus 1223 365348 3 650 2629460 1 no rank 0 650 Pelosinus sp. UFO1 1 484770 0 species species 0 Pelosinus fermentans 571 365349 1 1277 Selenomonadaceae 1 8 1843491 0 family 7 537 158846 1 genus 0 0 species 1 158847 537 Megamonas hypermegale 733 Selenomonas 1 6 970 0 genus 11 species 0 Selenomonas ruminantium 169 971 1 361 2637378 3 no rank 0 0 species 148 Selenomonas sp. oral taxon 478 1 712538 113 Selenomonas sp. oral taxon 136 1 713030 0 species species 0 1884263 1 Selenomonas sp. oral taxon 920 100 1 69823 192 Selenomonas sputigena 0 species 10 0 order 9 1843489 1150 1 Veillonellales 8 31977 1140 1 Veillonellaceae 21 0 family 318 1 39948 0 genus species 0 Dialister pneumosintes 318 39950 1 906 2 Megasphaera 1 165 6 genus 0 Megasphaera elsdenii 159 907 1 species 0 29465 3 1 Veillonella 534 6 genus 0 species 0 248315 1 Veillonella rodentium 113 29466 1 Veillonella parvula 415 species 0 102 1 909928 0 genus 102 Negativicoccus massiliensis 1 1702287 0 species 1676648 5 1 Limnochordia 283 3 class 0 280 Limnochordales 1 4 1676649 0 order 11 2 family 0 1676650 3 1 Limnochordaceae 269 2 1676651 267 1 Limnochorda 14 0 genus 1 1555112 253 Limnochorda pilosa 0 species 106 0 class 200 186801 93590 Clostridia 1 33 68295 11774 Thermoanaerobacterales 1 14 0 order family 0 227387 2 702 2 genus 0 227388 2 Thermodesulfobium 1 702 Thermodesulfobium narugense 700 184064 1 species 0 1 family 0 543372 2 1 Thermoanaerobacterales Family IV. Incertae Sedis 134 0 genus 133 1 252965 Mahella australiensis 133 252966 1 species 0 1 Thermoanaerobacterales Family III. Incertae Sedis 5178 543371 13 family 0 6 genus 0 4 1 Thermoanaerobacterium 1465 28895 3 Thermoanaerobacterium xylanolyticum 476 29329 1 species 0 985 Thermoanaerobacterium thermosaccharolyticum 1 1517 0 species 0 genus 76 3707 Caldicellulosiruptor 1 9 44000 species 0 Caldicellulosiruptor saccharolyticus 531 44001 1 0 species 401 Caldicellulosiruptor kristjanssonii 1 52765 Caldicellulosiruptor kronotskyensis 485 413889 1 species 0 31899 1 Caldicellulosiruptor bescii 466 species 0 1 413888 450 Caldicellulosiruptor hydrothermalis 0 species 0 species 463 Caldicellulosiruptor obsidiansis 1 717609 species 0 52766 1 Caldicellulosiruptor lactoaceticus 402 species 0 Caldicellulosiruptor owensensis 433 55205 1 1 Thermoanaerobacteraceae 5746 186814 15 family 0 25 1 129957 220 0 genus 0 species 1 129958 220 Carboxydothermus hydrogenoformans 0 genus 287 4688 Thermoanaerobacter 1 9 1754 2325 1 Thermoanaerobacter kivui 506 species 0 474 Thermoanaerobacter pseudethanolicus 1 496866 0 species no rank 0 2636821 2 1189 0 species 1 573062 641 Thermoanaerobacter sp. X513 Thermoanaerobacter sp. X514 548 399726 1 species 0 108150 1 Thermoanaerobacter italicus 611 species 0 species 0 Thermoanaerobacter mathranii 576 583357 1 0 species 1 29323 474 Thermoanaerobacter brockii 0 species 1 46354 571 Thermoanaerobacter wiegelii genus 0 121 140458 1 0 species 121 Thermacetogenium phaeum 1 85874 genus 0 475 249529 1 0 species 475 Caldanaerobacter subterraneus 1 911092 2 42857 217 0 no rank 0 genus 1 42837 82 0 species 82 Ammonifex degensii 1 42838 135 44260 1 genus 0 135 Moorella thermoacetica 1 1525 0 species 149 186802 76427 Clostridiales 1 218 0 order 3 31984 229 1 Heliobacteriaceae 6 0 family 223 Heliobacterium 1 2 2697 0 genus 2 0 species 1 35701 221 Heliobacterium modesticaldum 100 990719 1 family 0 100 1 990721 0 genus 0 species 1 1805714 100 Christensenella massiliensis no rank 0 954 538999 9 77 1 2717089 0 genus 0 species 1 2086584 77 Mordavella sp. Marseille-P3756 2 1392389 136 1 Intestinimonas 1 0 genus species 0 Intestinimonas butyriciproducens 135 1297617 1 3 539000 242 1 Clostridiales Family XVII. Incertae Sedis 3 0 family Thermaerobacter 1 239 73918 2 genus 0 7 Thermaerobacter marianensis 232 73919 1 species 0 3 543314 499 0 family 2 0 genus 2 86331 256 1 Mogibacterium 1 114527 254 Mogibacterium diversum 0 species 1 143393 243 [Eubacterium] sulci 0 species 1 family 0 543349 3 1 Symbiobacteriaceae 302 2 2733 301 Symbiobacterium 1 1 0 genus 0 species 1 2734 300 Symbiobacterium thermophilum 10 186804 5862 1 Peptostreptococcaceae 14 0 family 323 44259 1 genus 0 0 species 323 Filifactor alocis 1 143361 no rank 0 410 1411023 1 2081703 1 Peptostreptococcaceae bacterium oral taxon 929 410 species 0 1481960 1 201 genus 0 Peptoclostridium acidaminophilum 201 1731 1 species 0 0 genus 2 774 1 Acetoanaerobium 2 186831 772 Acetoanaerobium sticklandii 1 1511 0 species 1870884 2 Clostridioides 1 2712 3 genus 0 1 1496 2709 Clostridioides difficile 0 species genus 0 1 1 Paeniclostridium 1428 1849828 2 species 0 1505 1 Paeniclostridium sordellii 1427 family 0 64 1 Clostridiaceae 53124 31979 40 1 Clostridium 49087 1485 30 genus 0 282 species 0 1491 1 Clostridium botulinum 9572 1 1534 1352 Clostridium kluyveri 0 species 1 1548 1569 Clostridium scatologenes 0 species 0 species 1 84022 805 Clostridium aceticum 46867 1 Clostridium chauvoei 1184 species 0 0 no rank 479 2 2614128 0 species 1 755731 429 Clostridium sp. BNL1100 species 0 Clostridium sp. SY8519 50 1042156 1 0 species 1887 Clostridium saccharobutylicum 1 169679 0 species 1 1494 1052 Clostridium cochlearium 0 species 1 1538 1108 Clostridium ljungdahlii species 0 Clostridium formicaceticum 854 1497 1 1 29341 1338 Clostridium argentinense 0 species 1 1519 842 Clostridium tyrobutyricum 0 species 217159 1 Clostridium carboxidivorans 1455 species 0 1502 1 Clostridium perfringens 2489 species 0 Clostridium autoethanogenum 1060 84023 1 species 0 0 species 1369 Clostridium taeniosporum 1 394958 species 0 1542 1 Clostridium novyi 1053 species 0 Clostridium estertheticum 1113 238834 1 0 species 1 1561 2168 Clostridium baratii species 0 1509 1 Clostridium sporogenes 1294 1520 1 Clostridium beijerinckii 2733 species 0 Clostridium saccharoperbutylacetonicum 2108 36745 1 species 0 0 species 1 1216932 1515 Clostridium bornimense 0 species 1399 Clostridium tetani 1 1513 0 species 1321 Clostridium acetobutylicum 1 1488 species 0 Clostridium cellulovorans 1203 1493 1 1492 1 Clostridium butyricum 1959 species 0 1 1501 2524 Clostridium pasteurianum 0 species 390805 1 552 genus 0 1424294 1 Geosporobacter ferrireducens 552 species 0 1 Alkaliphilus 1127 114627 3 genus 0 2 0 species 1 208226 707 Alkaliphilus metalliredigens 0 species 1 461876 418 Alkaliphilus oremlandii Mordavella 1 1981033 1 genus 0 49082 4 Candidatus Arthromitus 1 2293 52 genus 0 3 2638829 2241 0 no rank 49118 1 Candidatus Arthromitus sp. SFB-mouse 722 species 0 1508644 1 Candidatus Arthromitus sp. SFB-mouse-NL 738 species 0 0 species 781 Candidatus Arthromitus sp. SFB-rat-Yit 1 1041504 541000 10 Ruminococcaceae 1 1141 10 family 0 0 genus 3 180 Flavonifractor 1 2 946234 0 species 1 292800 177 Flavonifractor plautii 216851 2 Faecalibacterium 1 145 3 genus 0 1 853 142 Faecalibacterium prausnitzii 0 species genus 0 1263 2 402 species 0 1264 1 Ruminococcus albus 185 1 1160721 217 Ruminococcus bicirculans 0 species genus 0 174 253238 1 0 species 1 253239 174 Ethanoligenens harbinense 98 1 2305133 0 no rank species 0 1572656 1 Ruminococcaceae bacterium CPB6 98 0 no rank 132 1 552397 [Clostridium] cellulosi 132 29343 1 species 0 family 0 3 1 Syntrophomonadaceae 322 68298 5 2 129001 102 Syntrophothermus 1 1 0 genus 86170 1 Syntrophothermus lipocalidus 101 species 0 862 2 1 Syntrophomonas 217 2 genus 0 1 863 215 Syntrophomonas wolfei 0 species 0 family 4 961 1 Eubacteriaceae 5 186806 2 0 genus 2 33951 429 Acetobacterium 1 0 species 427 Acetobacterium woodii 1 33952 2 1730 528 1 Eubacterium 5 0 genus 0 species 1 1736 523 Eubacterium limosum 0 family 2736 10 2304686 2304693 1 282 genus 0 species 0 [Clostridium] thermosuccinogenes 282 84032 1 0 genus 162 1 2304691 species 0 1510 1 [Clostridium] stercorarium 162 380 236752 1 genus 0 380 Fastidiosipila sanguinis 1 236753 0 species 401 1 Ruminiclostridium 2 1508657 0 genus 9 species 0 [Clostridium] cellulolyticum 392 1521 1 0 genus 1286 3 2304692 288965 1 [Clostridium] clariflavum 470 species 0 1677857 1 Herbivorax saccincola 523 species 0 species 0 1515 1 Ruminiclostridium thermocellum 293 no rank 0 99 2305130 1 0 species 1 1834198 99 Ruminiclostridium sp. KB18 0 genus 126 1 1637257 884684 1 Mageeibacillus indolicus 126 species 0 Lachnospiraceae 1 5876 186803 22 family 0 20 4 1506553 863 Lachnoclostridium 1 5 0 genus species 0 Lachnoclostridium phocaeense 160 1871021 1 no rank 0 2608895 1 183 1 1834196 183 Lachnoclostridium sp. YL32 0 species 1 66219 515 Lachnoclostridium phytofermentans 0 species 1 841 124 0 genus 1 301301 124 Roseburia hominis 0 species 0 genus 171 1 2719313 1 208479 171 [Clostridium] bolteae 0 species 3 830 642 Butyrivibrio 1 3 0 genus species 0 185008 1 Butyrivibrio hungatei 289 1 43305 350 Butyrivibrio proteoclasticus 0 species no rank 0 432 186928 2 species 0 712991 1 Lachnospiraceae bacterium oral taxon 500 164 species 0 [Eubacterium] rectale 268 39491 1 genus 0 207244 1 360 0 species 360 Anaerostipes hadrus 1 649756 184 2719231 1 genus 0 184 [Clostridium] saccharolyticum 1 84030 0 species 0 genus 397 1 1663717 species 0 Herbinix luporum 397 1679721 1 genus 0 2569097 1 543 0 species 543 [Eubacterium] hallii 1 39488 3 572511 447 Blautia 1 2 0 genus 2648079 1 160 no rank 0 160 Blautia sp. YL58 1 1796616 0 species 0 species 285 Blautia hansenii 1 1322 genus 0 2039240 1 271 0 species 271 Anaerotignum propionicum 1 28446 0 genus 1 698776 979 0 species 1 29360 979 Cellulosilyticum lentocellum 0 genus 443 1 28050 [Eubacterium] eligens 443 39485 1 species 0 15 family 0 186807 27 Peptococcaceae 1 4451 genus 0 278 2282742 1 278 Desulfotomaculum acetoxidans 1 58138 0 species genus 0 51514 1 295 species 0 51515 1 Dehalobacterium formicoaceticum 295 5 0 genus 2 471826 144 Candidatus Desulforudis 1 species 0 Candidatus Desulforudis audaxviator 139 471827 1 79206 4 Desulfosporosinus 1 892 3 genus 0 species 0 79209 1 Desulfosporosinus meridiei 318 1563 1 Desulfosporosinus orientis 330 species 0 Desulfosporosinus acidiphilus 241 885581 1 species 0 1 51196 141 0 genus species 0 Syntrophobotulus glycolicus 141 51197 1 154 1 Thermincola 2 278993 0 genus 1 Thermincola potens 153 863643 1 species 0 1562 5 1 Desulfotomaculum 853 3 genus 0 Desulfotomaculum ruminis 195 1564 1 species 0 59610 1 Desulfotomaculum reducens 269 species 0 0 species 201 Desulfotomaculum nigrificans 1 1565 185 Desulfotomaculum ferrireducens 1 1833852 0 species 1 genus 0 56112 4 1 Dehalobacter 525 0 no rank 360 2 2635733 Dehalobacter sp. DCA 179 1147129 1 species 0 species 0 Dehalobacter sp. CF 181 1131462 1 1 55583 164 Dehalobacter restrictus 0 species Desulfitobacterium 1 921 36853 5 genus 0 7 0 species 1 36854 215 Desulfitobacterium dehalogenans 0 species 1 233055 260 Desulfitobacterium dichloroeliminans 1 142877 227 Desulfitobacterium metallireducens 0 species Desulfitobacterium hafniense 212 49338 1 species 0 233 2282740 1 genus 0 0 species 233 Desulfotomaculum gibsoniae 1 102134 151 1 Oscillospiraceae 3 216572 0 family 1 3 genus 0 459786 2 1 Oscillibacter 150 Oscillibacter valericigenes 147 351091 1 species 0 order 0 11 Halanaerobiales 1 4267 53433 11 Halanaerobiaceae 1 2829 972 6 family 0 4 10 0 genus 3 2330 2369 Halanaerobium 1 1 656519 1132 Halanaerobium hydrogeniformans 0 species 0 species 1 2331 1227 Halanaerobium praevalens genus 0 26 1 Halothermothrix 456 32636 2 0 species 1 31909 430 Halothermothrix orenii family 0 2 Halobacteroidaceae 1 1427 53434 4 501 1 28186 0 genus 0 species 1 28187 501 Acetohalobium arabaticum 924 Halobacteroides 1 2 42417 0 genus 4 0 species 1 42422 920 Halobacteroides halobius 0 order 6 523 1 Natranaerobiales 3 485256 0 family 1 517 Natranaerobiaceae 1 2 485255 genus 0 516 375928 1 375929 1 Natranaerobius thermophilus 516 species 0 493 2770089 3 order 0 0 family 142 2 2770093 142 Thermosediminibacter 1 2 291988 0 genus 3 species 0 Thermosediminibacter oceani 139 291990 1 0 family 351 1 2770092 0 genus 351 1 499228 499229 1 Tepidanaerobacter acetatoxydans 351 species 0 no rank 0 33974 2 118 3 0 genus 2 1930845 118 1 Ndongobacter species 0 1871025 1 Ndongobacter massiliensis 115 1208 8 526524 0 class 8 526525 1208 0 order 1208 Erysipelotrichaceae 1 8 128827 0 family 9 0 genus 3 335 1 Turicibacter 2 191303 0 no rank 332 1 2638206 species 0 1712675 1 Turicibacter sp. H121 332 genus 0 1647 2 598 species 0 Erysipelothrix rhusiopathiae 298 1648 1 species 0 1514105 1 Erysipelothrix larvae 300 544447 1 170 no rank 0 species 0 1834207 1 Erysipelotrichaceae bacterium I46 170 1729679 2 1 Faecalibaculum 96 2 genus 0 species 0 Faecalibaculum rodentium 94 1702221 1 91061 420 1 Bacilli 139985 97 class 0 255 1385 95752 Bacillales 1 230 0 order 1189 8 539002 0 no rank 0 no rank 1 539738 431 0 genus 1 1378 431 0 no rank 431 1 2624949 0 species 1 1785995 431 Gemella sp. oral taxon 928 7 539742 758 0 no rank 7 33986 758 Exiguobacterium 1 10 0 genus 1 332410 131 Exiguobacterium sibiricum 0 species 0 no rank 4 2644629 477 Exiguobacterium sp. AT1b 91 360911 1 species 0 1 1849031 142 Exiguobacterium sp. U13-1 0 species 0 species 145 Exiguobacterium sp. ZWU0009 1 1224749 species 0 1399115 1 Exiguobacterium sp. MH3 99 0 species 1 132920 140 Exiguobacterium antarcticum 37 family 0 90964 40 Staphylococcaceae 1 21600 1093 1 Macrococcus 4 69965 0 genus 11 0 species 344 Macrococcus caseolyticus 1 69966 0 species 249 Macrococcus canis 1 1855823 0 no rank 1 2619255 489 0 species 489 Macrococcus sp. IME1552 1 1898474 0 genus 399 1 2005363 species 0 Auricoccus indicus 399 1849491 1 119 45669 1 genus 0 0 species 1 407035 119 Salinicoccus halodurans 33 1279 19952 1 Staphylococcus 196 0 genus 0 species 1 1290 605 Staphylococcus hominis 0 species 225 Staphylococcus pettenkoferi 1 170573 0 species 388 Staphylococcus simulans 1 1286 species 0 1281 1 Staphylococcus carnosus 427 1932 Staphylococcus aureus 1 1280 0 species species 0 1292 1 Staphylococcus warneri 630 804 Staphylococcus sciuri 1 1296 0 species species 0 Staphylococcus lutrae 358 155085 1 576 Staphylococcus nepalensis 1 214473 0 species 246432 1 Staphylococcus equorum 824 species 0 0 species 552 Staphylococcus argenteus 1 985002 species 0 29388 1 Staphylococcus capitis 660 species 0 Staphylococcus lugdunensis 588 28035 1 0 species 1 308354 590 Staphylococcus simiae 29382 1 Staphylococcus cohnii 624 species 0 70258 1 Staphylococcus piscifermentans 314 species 0 Staphylococcus succinus 566 61015 1 species 0 Staphylococcus schleiferi 476 1295 1 species 0 Staphylococcus epidermidis 1108 1282 1 species 0 species 0 29384 1 Staphylococcus kloosii 527 species 0 Staphylococcus haemolyticus 684 1283 1 1288 1 Staphylococcus xylosus 892 species 0 0 species 1 46127 477 Staphylococcus felis species 0 Staphylococcus condimenti 537 70255 1 0 no rank 543 1 91994 543 Staphylococcus sp. AntiMn-1 1 1715860 0 species 0 species 559 Staphylococcus saprophyticus 1 29385 1 643214 655 Staphylococcus stepanovicii 0 species 1284 1 Staphylococcus hyicus 319 species 0 1 283734 350 Staphylococcus pseudintermedius 0 species 1294 1 Staphylococcus muscae 245 species 0 0 species 1 45972 1370 Staphylococcus pasteuri species 0 985762 1 Staphylococcus agnetis 351 family 0 186824 2 95 292635 1 Laceyella 2 genus 0 1 1677050 93 0 genus Novibacillus thermophilus 93 1471761 1 species 0 1 Listeriaceae 3679 186820 9 family 0 11 2755 2 Brochothrix 1 424 3 genus 0 2756 1 Brochothrix thermosphacta 421 species 0 38 0 genus 6 1637 3244 Listeria 1 0 species 1 1643 441 Listeria welshimeri species 0 Listeria seeligeri 446 1640 1 species 0 Listeria innocua 461 1642 1 1639 1 Listeria monocytogenes 1184 species 0 674 Listeria ivanovii 1 1638 0 species 92 family 0 186817 114 1 Bacillaceae 49519 1386 58 1 Bacillus 30372 780 genus 0 9 653685 3323 0 species group 0 species subgroup 976 3 1938374 species 0 Bacillus velezensis 469 492670 1 1390 1 Bacillus amyloliquefaciens 394 species 0 Bacillus siamensis 113 659243 1 species 0 Bacillus paralicheniformis 204 1648923 1 species 0 species 0 72361 1 Bacillus vallismortis 35 307 Bacillus atrophaeus 1 1452 0 species Bacillus subtilis 1307 1423 1 species 0 0 species 300 Bacillus licheniformis 1 1402 0 species 194 Bacillus sonorensis 1 119858 Bacillus gibsonii 89 79881 1 species 0 1 1792192 282 0 species group 293387 1 Bacillus altitudinis 282 species 0 19 185979 3285 0 no rank 128 Bacillus sp. 1s-1 1 2026248 0 species Bacillus sp. OxB-1 155 98228 1 species 0 species 0 Bacillus sp. IHB B 7164 487 1827146 1 Bacillus sp. SJ-10 77 563169 1 species 0 128 Bacillus sp. H15-1 1 1856406 0 species 135 Bacillus sp. JS 1 1127744 0 species species 0 1628753 1 Bacillus sp. LM 4-2 66 1 666686 654 Bacillus sp. 1NLA3E 0 species 1941347 1 Bacillus sp. 275 67 species 0 0 species 1 1409 67 Bacillus sp. (in: Bacteria) 1565991 1 Bacillus sp. X1(2014) 471 species 0 Bacillus sp. BH072 30 1570330 1 species 0 species 0 756828 1 Bacillus sp. WP8 277 0 species 104 Bacillus sp. MD-5 1 2009331 1 1837130 163 Bacillus sp. FJAT-14266 0 species 0 species 59 Bacillus sp. YP1 1 1574141 Bacillus sp. Pc3 76 1446792 1 species 0 species 0 Bacillus sp. SDLI1 115 1774743 1 0 species 1 2049935 26 Bacillus sp. Lzh-5 Bacillus methanolicus 444 1471 1 species 0 220 Bacillus glycinifermentans 1 1664069 0 species Bacillus cohnii 688 33932 1 species 0 650 Bacillus cellulosilyticus 1 1413 0 species 1 135735 692 Bacillus endophyticus 0 species 0 species 1 1404 1488 Bacillus megaterium 1 79883 319 Bacillus horikoshii 0 species 1 1479 268 Bacillus smithii 0 species species 0 632773 1 Bacillus beveridgei 169 579 Bacillus weihaiensis 1 1547283 0 species 0 species group 10 86661 13603 0 species 465 Bacillus anthracis 1 1392 4225 Bacillus thuringiensis 1 1428 0 species 0 species 517 Bacillus cytotoxicus 1 580165 0 species 1662 Bacillus mycoides 1 1405 Bacillus toyonensis 400 155322 1 species 0 0 species 1 658666 467 Bacillus bombysepticus Bacillus cereus 4646 1396 1 species 0 0 no rank 1221 3 2750818 1 2053832 329 Bacillus sp. HBCD-sjtu 0 species 566 Bacillus sp. FDAARGOS_235 1 1839798 0 species 0 species 326 Bacillus sp. ABP14 1 1892404 0 species 1 86664 490 Bacillus flexus 1408 1 Bacillus pumilus 1092 species 0 Bacillus xiamenensis 246 1178537 1 species 0 Bacillus aryabhattai 498 412384 1 species 0 0 species 575 Bacillus safensis 1 561879 0 species 198 Bacillus infantis 1 324767 species 0 1398 1 Bacillus coagulans 394 182 1 459532 0 genus 182 Terribacillus aidingensis 1 586416 0 species 2 175304 259 Lentibacillus 1 1 0 genus 0 species 1 1472767 258 Lentibacillus amyloliquefaciens 1173 2675230 2 genus 0 665099 1 Bacillus oceanisediminis 390 species 0 783 Bacillus kochii 1 859143 0 species genus 0 333 1055323 1 333 Aeribacillus pallidus 1 33936 0 species 0 genus 2365 5 2675234 0 species 217 Bacillus halodurans 1 86665 0 species 557 Bacillus krulwichiae 1 199441 1 300825 560 Bacillus lehensis 0 species 0 species 558 Bacillus clausii 1 79880 0 species 1 79885 473 Bacillus pseudofirmus 1329200 2 709 genus 0 species 0 255247 1 Fictibacillus arsenicus 312 1221500 1 Fictibacillus phosphorivorans 397 species 0 0 genus 2 45667 537 species 0 Halobacillus mangrovi 311 402384 1 1570 1 Halobacillus halophilus 226 species 0 159 Salimicrobium 1 2 351195 0 genus 2 1 1230341 157 Salimicrobium jeotgali 0 species 98 0 genus 15 129337 2231 1 Geobacillus 146 Geobacillus subterraneus 1 129338 0 species species 0 1422 1 Geobacillus stearothermophilus 163 129 Geobacillus genomosp. 3 1 1921421 0 species no rank 0 2642459 6 838 Geobacillus sp. GHH01 83 1233873 1 species 0 471223 1 Geobacillus sp. WCH70 297 species 0 0 species 1 581103 226 Geobacillus sp. Y4.1MC1 1 550542 65 Geobacillus sp. Y412MC52 0 species 1 544556 54 Geobacillus sp. Y412MC61 0 species 0 species 1 691437 113 Geobacillus sp. C56-T3 1505648 4 638 species group 0 169283 1 Geobacillus lituanicus 107 species 0 Geobacillus thermoleovorans 309 33941 1 species 0 species 0 Geobacillus thermocatenulatus 128 33938 1 1462 1 Geobacillus kaustophilus 94 species 0 219 Geobacillus thermodenitrificans 1 33940 0 species 3278 Lysinibacillus 1 5 400634 0 genus 31 0 species 1 1421 1565 Lysinibacillus sphaericus 596 1 2636778 0 no rank 0 species 1 2072025 596 Lysinibacillus sp. YS11 0 species 1 28031 524 Lysinibacillus fusiformis 1 1145276 562 Lysinibacillus varians 0 species 0 genus 319 1 1906945 1 1426 319 Parageobacillus thermoglucosidasius 0 species genus 0 182709 1 981 1 182710 981 Oceanobacillus iheyensis 0 species genus 0 1082 2675229 2 1 1478 817 Bacillus simplex 0 species 264697 1 Bacillus muralis 265 species 0 1739 Anoxybacillus 1 6 150247 0 genus 30 species 0 Anoxybacillus gonensis 301 198467 1 no rank 0 620 2639704 2 0 species 288 Anoxybacillus sp. B7M1 1 1490057 332 Anoxybacillus sp. B2M1 1 1490052 0 species 0 species 1 294699 271 Anoxybacillus amylolyticus species 0 33934 1 Anoxybacillus flavithermus 517 408 1 29331 0 genus Amphibacillus xylanus 408 1449 1 species 0 0 genus 21 3300 Virgibacillus 1 7 84406 0 no rank 2 2620237 1118 1 403957 532 Virgibacillus sp. SK37 0 species species 0 1911587 1 Virgibacillus sp. 6R 586 163877 1 Virgibacillus necropolis 625 species 0 species 0 Virgibacillus phasianinus 479 2017483 1 1482 1 Virgibacillus halodenitrificans 439 species 0 0 species 618 Virgibacillus pantothenticus 1 1473 0 family 151 1 186821 no rank 0 151 663587 1 0 species 151 [Bacillus] selenitireducens 1 85683 family 0 16 1 Planococcaceae 7128 186818 27 0 genus 1 308 Jeotgalibacillus 1 2 157226 0 species 307 Jeotgalibacillus malaysiensis 1 1508404 1 genus 0 1649 2 Kurthia 1 448 447 2644826 1 no rank 0 0 species 447 Kurthia sp. 11kri321 1 1750719 19 0 genus 12 1372 3330 Planococcus 1 species 0 1038856 1 Planococcus plakortidis 83 0 species 1 1374 374 Planococcus kocurii no rank 0 541 2662419 2 0 species 1 2058136 182 Planococcus sp. MB-3u-03 1 1526927 359 Planococcus sp. PAMC 21323 0 species Planococcus rifietoensis 169 200991 1 species 0 Planococcus halocryophilus 350 1215089 1 species 0 1302659 1 Planococcus sp. L10.15 401 species 0 1 161360 236 Planococcus antarcticus 0 species 0 species 435 Planococcus donghaensis 1 414778 1598147 1 Planococcus faecalis 399 species 0 192421 1 Planococcus maritimus 323 species 0 1 0 genus 2 648802 403 1 Rummeliibacillus 0 species 402 Rummeliibacillus stabekisii 1 241244 24 genus 0 648800 3 1 Solibacillus 1065 554 2637870 1 no rank 0 species 0 Solibacillus sp. R5-41 554 2048654 1 1 76853 487 Solibacillus silvestris 0 species 2 genus 0 1569 5 1 Sporosarcina 1558 2 2647733 363 0 no rank species 0 1930764 1 Sporosarcina sp. P33 192 171 Sporosarcina sp. P37 1 1930546 0 species species 0 1476 1 Sporosarcina psychrophila 426 Sporosarcina ureae 767 1571 1 species 0 family 0 38 1 Paenibacillaceae 11092 186822 45 no rank 0 410 85151 3 3 0 genus 3 55079 410 Aneurinibacillus 1 0 species 1 1500254 211 Aneurinibacillus soli 1 2642329 196 0 no rank 1 1450761 196 Aneurinibacillus sp. XH2 0 species 1 76632 234 0 genus Thermobacillus composti 234 377615 1 species 0 77 0 genus 36 44249 9193 Paenibacillus 1 species 0 Paenibacillus naphthalenovorans 135 162209 1 Paenibacillus peoriae 256 59893 1 species 0 1 189425 266 Paenibacillus graminis 0 species 0 species 157 Paenibacillus yonginensis 1 1462996 species 0 Paenibacillus polymyxa 1113 1406 1 0 species 221 Paenibacillus borealis 1 160799 species 0 Paenibacillus mucilaginosus 329 61624 1 species 0 Paenibacillus donghaensis 402 414771 1 species 0 1464 1 Paenibacillus larvae 346 Paenibacillus stellifer 160 169760 1 species 0 species 0 Paenibacillus sabinae 116 365617 1 species 0 1126833 1 Paenibacillus beijingensis 225 1 159743 164 Paenibacillus terrae 0 species 248 Paenibacillus durus 1 44251 0 species 1 2044880 184 0 species group 1 483937 184 Paenibacillus riograndensis 0 species 1 1178515 224 Paenibacillus swuensis 0 species 0 species 1 189426 359 Paenibacillus odorifer Paenibacillus ihbetae 144 1870820 1 species 0 0 species 203 Paenibacillus kribbensis 1 172713 528191 1 Paenibacillus xylanexedens 276 species 0 0 species 359 Paenibacillus crassostreae 1 1763538 0 species 225 Paenibacillus bovis 1 1616788 3004 13 185978 0 no rank 1 1536775 286 Paenibacillus sp. FSL H7-0737 0 species species 0 Paenibacillus sp. FSL P4-0081 250 1536769 1 364 Paenibacillus sp. IHBB 10380 1 1566358 0 species 0 species 202 Paenibacillus sp. 32O-W 1 1695218 Paenibacillus sp. FSL R5-0345 323 1536770 1 species 0 species 0 1870819 1 Paenibacillus sp. BIHB4019 216 species 0 1536774 1 Paenibacillus sp. FSL H7-0357 204 151 Paenibacillus sp. Y412MC10 1 481743 0 species Paenibacillus sp. JDR-2 185 324057 1 species 0 Paenibacillus sp. lzh-N1 227 2069255 1 species 0 species 0 1536772 1 Paenibacillus sp. FSL R7-0273 181 0 species 204 Paenibacillus sp. FSL R5-0912 1 1536771 species 0 1536773 1 Paenibacillus sp. FSL R7-0331 211 genus 0 2 1 Brevibacillus 1217 55080 4 198 Brevibacillus formosus 1 54913 0 species species 0 1465 1 Brevibacillus laterosporus 651 366 Brevibacillus brevis 1 1393 0 species 1069 1 Alicyclobacillaceae 8 186823 0 family 2 Tumebacillus 1 386 432330 3 genus 0 2 257 Tumebacillus avium 1 1903704 0 species species 0 1214604 1 Tumebacillus algifaecis 127 0 genus 268 1 29330 0 species 1 405212 268 Alicyclobacillus acidocaldarius 1129704 3 1 Kyrpidia 413 2 genus 0 species 0 33943 1 Kyrpidia tusciae 205 species 0 2055160 1 Kyrpidia sp. EA-1 206 186826 164 Lactobacillales 1 44136 123 order 0 family 0 26 Enterococcaceae 1 5859 81852 20 33969 2 Melissococcus 1 622 2 genus 0 species 0 Melissococcus plutonius 620 33970 1 1350 12 1 Enterococcus 3894 35 genus 0 species 0 Enterococcus casseliflavus 199 37734 1 0 species 1 1352 620 Enterococcus faecium 0 species 334 Enterococcus durans 1 53345 3 2608891 618 0 no rank 2057791 1 Enterococcus sp. CR-Ec1 203 species 0 181 Enterococcus sp. FDAARGOS_163 1 2060306 0 species species 0 Enterococcus sp. FDAARGOS_375 234 2060307 1 Enterococcus mundtii 344 53346 1 species 0 1351 1 Enterococcus faecalis 597 species 0 394 Enterococcus hirae 1 1354 0 species 366 Enterococcus thailandicus 1 417368 0 species species 0 2005703 1 Enterococcus wangshanyuanii 387 4 0 genus 3 2737 876 1 Vagococcus 0 species 1 633807 446 Vagococcus penaei 519472 1 Vagococcus teuberi 426 species 0 51668 2 Tetragenococcus 1 441 2 genus 0 0 species 1 51669 439 Tetragenococcus halophilus 2943 1 Carnobacteriaceae 10 186828 0 family 5 399 191769 1 genus 0 399 2632303 1 no rank 0 1911586 1 Marinilactibacillus sp. 15R 399 species 0 4 genus 0 1470540 3 Jeotgalibaca 1 693 0 species 336 Jeotgalibaca dankookensis 1 708126 0 no rank 1 2621505 353 0 species 1 1903686 353 Jeotgalibaca sp. PTS2502 Carnobacterium 1 1846 2747 5 genus 0 8 257487 2 744 no rank 0 1 208596 430 Carnobacterium sp. 17-4 0 species 1 1564681 314 Carnobacterium sp. CP1 0 species 1 2751 655 Carnobacterium maltaromaticum 0 species species 0 147709 1 Carnobacterium inhibens 439 16031 Lactobacillaceae 1 58 33958 0 family 35 4 genus 0 1253 6 1 Pediococcus 1343 1 1670797 171 0 species group Pediococcus acidilactici 171 1254 1 species 0 114090 1 Pediococcus inopinatus 224 species 0 species 0 187452 1 Pediococcus claussenii 299 1 1255 423 Pediococcus pentosaceus 0 species 51663 1 Pediococcus damnosus 222 species 0 3 2767886 361 0 genus 75 Lactobacillus koreensis 1 637971 0 species species 0 Lactobacillus zymae 83 267363 1 0 species 203 Lactobacillus brevis 1 1580 272 1 2767890 0 genus 0 species 272 Lactobacillus hokkaidonensis 1 1193095 genus 0 2767879 6 2035 species 0 Lactobacillus alimentarius 325 1602 1 0 species 1 392416 385 Lactobacillus crustorum species 0 Lactobacillus allii 361 1847728 1 1612 1 Lactobacillus farciminis 307 species 0 species 0 Lactobacillus ginsenosidimutans 409 1007676 1 0 species 1 1074467 248 Lactobacillus heilongjiangensis 788 3 2767842 0 genus 1 1589 135 Lactobacillus pentosus 0 species species 0 Lactobacillus paraplantarum 120 60520 1 533 Lactobacillus plantarum 1 1590 0 species 2767887 4 1513 genus 0 1 89059 235 Lactobacillus acidipiscis 0 species species 0 1601 1 Lactobacillus agilis 146 122 Lactobacillus ruminis 1 1623 0 species Lactobacillus salivarius 1010 1624 1 species 0 2759736 3 701 genus 0 1 47715 228 Lactobacillus rhamnosus 0 species 0 species 215 Lactobacillus paracasei 1 1597 0 species 258 Lactobacillus casei 1 1582 2 2767881 671 0 genus species 0 Lactobacillus lindneri 361 53444 1 0 species 1 1625 310 Lactobacillus sanfranciscensis 16 1578 5030 Lactobacillus 1 112 0 genus species 0 Lactobacillus amylovorus 374 1604 1 1 1600 239 Lactobacillus acetotolerans 0 species 1587 1 Lactobacillus helveticus 524 species 0 1 83683 178 Lactobacillus amylolyticus 0 species species 0 33959 1 Lactobacillus johnsonii 725 2620435 4 706 no rank 0 0 species 101 Lactobacillus sp. D1501 1 2108362 0 species 1 2099788 171 Lactobacillus sp. CBA3605 1545702 1 Lactobacillus sp. wkB8 296 species 0 138 Lactobacillus sp. CBA3606 1 2099789 0 species 331 Lactobacillus acidophilus 1 1579 0 species species 0 1584 1 Lactobacillus delbrueckii 240 52242 1 Lactobacillus gallinarum 298 species 0 225 Lactobacillus kefiranofaciens 1 267818 0 species 0 species 1 109790 349 Lactobacillus jensenii 0 species 729 Lactobacillus gasseri 1 1596 genus 0 2767892 1 158 0 species 158 Lactobacillus paracollinoides 1 240427 0 genus 1 2767876 145 0 species 1 1603 145 Lactobacillus amylophilus 0 genus 659 2 2767885 0 species 411 Lactobacillus sakei 1 1599 Lactobacillus curvatus 248 28038 1 species 0 0 genus 211 1 2767877 211 Lactobacillus kunkeei 1 148814 0 species 3 2767893 583 0 genus 210 Lactobacillus curieae 1 1138822 0 species species 0 1581 1 Lactobacillus buchneri 179 152331 1 Lactobacillus parabuchneri 194 species 0 genus 0 553 2767889 2 Lactobacillus backii 293 375175 1 species 0 0 species 260 Lactobacillus coryniformis 1 1610 0 genus 973 3 2742598 Lactobacillus reuteri 716 1598 1 species 0 species 0 Lactobacillus mucosae 130 97478 1 species 0 1613 1 Lactobacillus fermentum 127 1300 49 Streptococcaceae 1 14039 22 family 0 Streptococcus 1 11463 1301 43 genus 0 113 species 0 Streptococcus gordonii 397 1302 1 1318 1 Streptococcus parasanguinis 188 species 0 0 species 1 1814128 134 Streptococcus halotolerans 0 species 220 Streptococcus lutetiensis 1 150055 0 species 1 1349 287 Streptococcus uberis 0 species 1 1305 136 Streptococcus sanguinis 1 1308 371 Streptococcus thermophilus 0 species species 0 1346 1 Streptococcus iniae 288 species 0 Streptococcus gallolyticus 456 315405 1 species 0 Streptococcus infantarius 331 102684 1 452 Streptococcus pyogenes 1 1314 0 species 1 1888195 114 Streptococcus himalayensis 0 species 153 Streptococcus acidominimus 1 1326 0 species 0 species 1 1304 456 Streptococcus salivarius 500 2 119603 0 species group 0 species 323 Streptococcus equi 1 1336 177 Streptococcus dysgalactiae 1 1334 0 species 370 Streptococcus parauberis 1 1348 0 species 1 1311 597 Streptococcus agalactiae 0 species species 0 257758 1 Streptococcus pseudopneumoniae 151 Streptococcus equinus 161 1335 1 species 0 1 82348 160 Streptococcus pluranimalium 0 species species 0 Streptococcus oralis 359 1303 1 0 species group 3 671232 1180 526 Streptococcus anginosus 1 1328 0 species 1338 1 Streptococcus intermedius 451 species 0 0 species 1 76860 203 Streptococcus constellatus 0 no rank 1011 7 2608887 0 species 82 Streptococcus sp. NPS 308 1 1902136 1759399 1 Streptococcus sp. A12 110 species 0 1 1839799 136 Streptococcus sp. FDAARGOS_192 0 species 1156433 1 Streptococcus sp. I-P16 126 species 0 322 Streptococcus sp. 'group B' 1 1319 0 species 0 species 123 Streptococcus sp. I-G2 1 1156431 112 Streptococcus sp. oral taxon 431 1 712633 0 species 1 1313 424 Streptococcus pneumoniae 0 species 1 1825069 172 Streptococcus marmotae 0 species 28037 1 Streptococcus mitis 357 species 0 400065 1 Streptococcus merionis 173 species 0 45634 1 Streptococcus cristatus 152 species 0 0 species 195 Streptococcus pasteurianus 1 197614 1 1811193 125 Streptococcus pantholopis 0 species species 0 Streptococcus suis 621 1307 1 Streptococcus mutans 446 1309 1 species 0 59310 1 Streptococcus macedonicus 213 species 0 Lactococcus 1 2554 1357 5 genus 0 2 0 species 1 1363 383 Lactococcus garvieae 1 1364 323 Lactococcus piscium 0 species 1366 1 Lactococcus raffinolactis 184 species 0 0 species 1662 Lactococcus lactis 1 1358 2 0 family 8 186827 1088 1 Aerococcaceae 1086 1 Aerococcus 7 1375 0 genus 10 Aerococcus sanguinicola 103 119206 1 species 0 132 Aerococcus urinaehominis 1 128944 0 species species 0 Aerococcus christensenii 177 87541 1 Aerococcus viridans 187 1377 1 species 0 0 species 264 Aerococcus urinaeequi 1 51665 Aerococcus urinae 213 1376 1 species 0 no rank 0 441 263855 1 1 1993866 441 Lactobacillales bacterium 0 species 5 0 family 17 81850 3612 1 Leuconostocaceae 303 1 46254 0 genus species 0 Oenococcus oeni 303 1247 1 22 0 genus 9 1243 2222 1 Leuconostoc 2685106 1 193 no rank 0 979982 1 Leuconostoc sp. C2 193 species 0 217 Leuconostoc citreum 1 33964 0 species species 0 Leuconostoc carnosum 318 1252 1 0 species 1 1244 459 Leuconostoc gelidum 1245 1 Leuconostoc mesenteroides 591 species 0 species 0 136609 1 Leuconostoc kimchii 213 255248 1 Leuconostoc garlicum 87 species 0 1246 1 Leuconostoc lactis 122 species 0 0 genus 11 1082 1 Weissella 6 46255 1 165096 274 Weissella koreensis 0 species 1249 1 Weissella paramesenteroides 231 species 0 species 0 Weissella jogaejeotgali 199 1631871 1 0 species 1 137591 153 Weissella cibaria 214 Weissella ceti 1 759620 0 species phylum 0 68297 4 1201 4 203486 1201 0 class order 0 203487 4 1201 Dictyoglomaceae 1 1201 203488 4 family 0 6 13 3 Dictyoglomus 1 1195 6 genus 0 1 14 544 Dictyoglomus thermophilum 0 species species 0 Dictyoglomus turgidum 645 513050 1 phylum 0 40117 14 2247 14 203693 2247 1 Nitrospira 13 0 class 10 0 order 13 189778 2234 Nitrospirales 1 0 family 8 2224 Nitrospiraceae 1 12 189779 3 genus 0 28261 2 1 Thermodesulfovibrio 1046 species 0 Thermodesulfovibrio yellowstonii 1043 28262 1 1 Leptospirillum 497 179 4 genus 0 6 species group 0 184 261386 1 1 178606 184 Leptospirillum ferriphilum 0 species 140 655606 1 species group 0 1 180 140 Leptospirillum ferrooxidans 0 species 0 species group 1 261385 167 species 0 Leptospirillum sp. Group II 'CF-1' 167 1660083 1 0 genus 12 673 1 Nitrospira 5 1234 239 Nitrospira moscoviensis 1 42253 0 species 125 Candidatus Nitrospira inopinata 1 1715989 0 species 0 species 158 Nitrospira japonica 1 1325564 species 0 Nitrospira defluvii 139 330214 1 0 no rank 598 3 2323 3 1783234 598 0 clade 2 95901 539 0 clade 539 2 2497643 0 class 2 2497644 539 0 order 0 family 539 2 2497645 539 1 Candidatus Babela 2 1551504 0 genus 8 0 species 1 673862 531 Candidatus Babela massiliensis 0 phylum 1 95818 59 0 no rank 1 1895827 59 59 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 1 2056494 0 species phylum 0 203691 59 16427 16427 Spirochaetia 1 59 203692 0 class 33 2455 9 1643688 0 order family 0 30 1 Leptospiraceae 2455 170 9 genus 0 15 1 Leptospira 2242 171 6 0 species 400 Leptospira borgpetersenii 1 174 0 species 415 Leptospira biflexa 1 172 1 173 965 Leptospira interrogans 0 species Leptospira santarosai 181 28183 1 species 0 Leptospira alstonii 266 28452 1 species 0 3 genus 0 338321 2 Turneriella 1 183 Turneriella parva 180 29510 1 species 0 0 order 16 4202 Brachyspirales 1 7 1643686 4186 Brachyspiraceae 1 6 143786 0 family 1 14 0 genus 5 29521 4185 Brachyspira 1 0 species 1 84378 899 Brachyspira murdochii species 0 Brachyspira hyodysenteriae 1065 159 1 0 species 1 52584 1233 Brachyspira pilosicoli species 0 84377 1 Brachyspira intermedia 974 0 order 41 9737 1 Spirochaetales 42 136 1643685 17 Borreliaceae 1 6628 30 family 0 109 genus 0 138 8 Borrelia 1 3590 species 0 Borrelia miyamotoi 707 47466 1 species 0 Borrelia turicatae 413 142 1 species 0 140 1 Borrelia hermsii 382 Borrelia anserina 353 143 1 species 0 0 species 1 141 411 Borrelia parkeri species 0 Borrelia recurrentis 538 44449 1 species 0 40834 1 Borrelia duttonii 677 1 Borreliella 3008 64895 8 genus 0 180 399 Borreliella burgdorferi 1 139 0 species species 0 Borrelia mayonii 403 1674146 1 species 0 Borreliella bavariensis 297 664662 1 Borreliella bissettii 369 64897 1 species 0 1 29518 407 Borreliella afzelii 0 species species 0 Borreliella garinii 690 29519 1 62088 1 Borreliella valaisiana 263 species 0 137 24 Spirochaetaceae 1 3068 7 family 0 Spirochaeta 1 425 146 3 genus 0 4 0 species 1 46355 209 Spirochaeta africana species 0 154 1 Spirochaeta thermophila 212 genus 0 4 Sphaerochaeta 1 332 399320 4 species 0 273376 1 Sphaerochaeta coccoides 94 species 0 Sphaerochaeta pleomorpha 151 1131707 1 Sphaerochaeta globosa 83 1131703 1 species 0 0 genus 2 209 1 Sediminispirochaeta 2 1911556 207 Sediminispirochaeta smaragdinae 1 55206 0 species Treponema 1 1838 157 12 genus 0 21 0 species 68 Treponema paraluiscuniculi 1 53435 225 Treponema putidum 1 221027 0 species 167 1 Treponema succinifaciens 268 species 0 Treponema pedis 271 409322 1 species 0 215591 1 Treponema caldarium 213 species 0 158 1 Treponema denticola 243 species 0 2638727 1 88 no rank 0 1 1539298 88 Treponema sp. OMZ 838 0 species 1 88058 154 Treponema primitia 0 species 160 1 Treponema pallidum 65 species 0 Treponema brennaborense 109 81028 1 species 0 Treponema azotonutricium 113 150829 1 species 0 Salinispira 1 257 1616789 2 genus 0 1 1307761 1 Salinispira pacifica 256 species 0 phylum 0 200940 7 2029 class 0 2029 67799 7 1 Thermodesulfobacteriales 2029 188710 7 order 0 2 188711 6 Thermodesulfobacteriaceae 1 2027 6 family 0 genus 0 241192 1 266 266 Thermodesulfatator indicus 1 171695 0 species 2 genus 0 1740 3 Thermodesulfobacterium 1 1432 species 0 Thermodesulfobacterium commune 368 1741 1 0 species 1062 Thermodesulfobacterium geofontis 1 1295609 genus 0 444090 1 323 Caldimicrobium thiodismutans 323 1653476 1 species 0 628 508458 9 phylum 0 Synergistia 1 628 649775 9 class 0 1 order 0 4 1 Synergistales 627 649776 8 7 649777 623 1 Synergistaceae 2 0 family 0 genus 118 1 336260 0 species 1 336261 118 Thermovirga lienii 2 81466 165 1 Aminobacterium 2 0 genus 0 species 163 Aminobacterium colombiense 1 81468 0 genus 1 49894 113 species 0 97477 1 Acetomicrobium mobile 113 genus 0 87 81461 1 species 0 Thermanaerovibrio acidaminovorans 87 81462 1 508459 1 138 genus 0 1197717 1 Cloacibacillus porcorum 138 species 0 phylum 0 2576 200930 8 2576 Deferribacteres 1 8 68337 0 class 5 191393 7 Deferribacterales 1 2571 6 order 0 191394 6 Deferribacteraceae 1 2565 13 family 0 2 53572 1309 Deferribacter 1 3 0 genus Deferribacter desulfuricans 1306 197162 1 species 0 508 1 545865 0 genus 477976 1 Calditerrivibrio nitroreducens 508 species 0 1 117999 304 0 genus 304 Denitrovibrio acetiphilus 1 118000 0 species 431 2351 1 genus 0 species 0 2352 1 Flexistipes sinusarabici 431 0 phylum 9436 42 200918 17 0 class 42 188708 9436 Thermotogae 1 5538 1 Thermotogales 28 2419 0 order 15 0 family 10 3619 Fervidobacteriaceae 1 10 1643950 4 0 genus 4 2422 937 Fervidobacterium 1 1 93466 369 Fervidobacterium pennivorans 0 species 2423 1 Fervidobacterium islandicum 189 species 0 0 species 375 Fervidobacterium nodosum 1 2424 5 2420 2672 1 Thermosipho 20 0 genus species 0 46541 1 Thermosipho melanesiensis 599 1318 2676525 2 no rank 0 0 species 653 Thermosipho sp. 1063 1 1462747 0 species 1 1437364 665 Thermosipho sp. 1070 species 0 Thermosipho africanus 735 2421 1 Thermotogaceae 1 1904 188709 17 family 0 3 19 genus 0 2335 11 Thermotoga 1 911 species 0 Thermotoga maritima 78 2336 1 48 Thermotoga naphthophila 1 93930 0 species 1508420 1 Thermotoga profunda 265 species 0 295 2631113 4 no rank 0 species 0 1157948 1 Thermotoga sp. 2812B 81 49 Thermotoga sp. Cell2 1 1157947 0 species 0 species 76 Thermotoga sp. RQ2 1 126740 Thermotoga sp. RQ7 89 126738 1 species 0 0 species 1 1508419 47 Thermotoga caldifontis 93929 1 Thermotoga petrophila 63 species 0 species 0 Thermotoga neapolitana 96 2337 1 5 1643951 990 1 Pseudothermotoga 9 0 genus species 0 Pseudothermotoga elfii 334 38322 1 119394 1 Pseudothermotoga thermarum 264 species 0 species 0 177758 1 Pseudothermotoga lettingae 333 Pseudothermotoga hypogea 50 57487 1 species 0 676 Kosmotogales 1 5 1643946 0 order 4 672 1643948 4 family 0 genus 0 4 1 Kosmotoga 475 651456 3 species 0 651457 1 Kosmotoga olearia 212 0 species 259 Kosmotoga pacifica 1 1330330 0 genus 197 1 1184396 1184387 1 Mesotoga prima 197 species 0 1 Petrotogales 3205 1643947 8 order 0 13 0 family 7 1643949 3192 160798 3 1 Marinitoga 2006 22 genus 0 2640159 1 935 no rank 0 Marinitoga sp. 1137 935 1545835 1 species 0 1 149715 1049 Marinitoga piezophila 0 species 1 0 genus 2 28236 462 1 Petrotoga species 0 69499 1 Petrotoga mobilis 461 genus 0 3 Defluviitoga 1 724 1511648 2 0 species 721 Defluviitoga tunisiensis 1 1006576 0 phylum 25 200783 5418 class 0 5 1 Aquificae 5418 187857 25 4 1485951 839 0 order 6 0 family 4 558314 839 1 Desulfurobacteriaceae 1 Desulfurobacterium 745 64159 2 genus 0 1 0 species 1 64160 744 Desulfurobacterium thermolithotrophum 1 171868 88 0 genus 0 species 1 228745 88 Thermovibrio ammonificans 9 0 order 20 32069 4574 1 Aquificales 64898 12 Aquificaceae 1 2162 5 family 0 2713 1 98 genus 0 1 63363 98 Aquifex aeolicus 0 species 1 939 128 0 genus 128 Hydrogenobacter thermophilus 1 940 0 species 1 0 genus 3 75905 154 1 Thermocrinis 1 75906 75 Thermocrinis ruber 0 species species 0 136094 1 Thermocrinis albus 78 6 168657 1777 Hydrogenobaculum 1 66 0 genus 0 no rank 1711 5 2622382 0 species 354 Hydrogenobaculum sp. SN 1 547146 0 species 1 547145 354 Hydrogenobaculum sp. SHO Hydrogenobaculum sp. HO 354 547144 1 species 0 Hydrogenobaculum sp. Y04AAS1 295 380749 1 species 0 species 0 547143 1 Hydrogenobaculum sp. 3684 354 no rank 0 90150 2 214 Thermosulfidibacter 1 214 412592 2 genus 0 2 1 412593 212 Thermosulfidibacter takaii 0 species 1 family 0 224027 5 Hydrogenothermaceae 1 2189 0 genus 27 1667 1 Sulfurihydrogenibium 3 212790 819 1 2619248 0 no rank 1 436114 819 Sulfurihydrogenibium sp. YO3AOP1 0 species Sulfurihydrogenibium azorense 821 309806 1 species 0 genus 0 521 182899 1 521 Persephonella marina 1 309805 0 species phylum 0 32066 24 23621 23621 Fusobacteriia 1 24 203490 0 class 26 203491 23 1 Fusobacteriales 23595 28 order 0 13 family 0 203492 11 1 Fusobacteriaceae 17887 167639 1 663 genus 0 663 Ilyobacter polytropus 1 167642 0 species 74 0 genus 9 848 17211 Fusobacterium 1 Fusobacterium mortiferum 998 850 1 species 0 species 0 Fusobacterium periodonticum 3323 860 1 856 1 Fusobacterium varium 2229 species 0 species 0 859 1 Fusobacterium necrophorum 416 species 0 Fusobacterium gonidiaformans 670 849 1 1 861 1217 Fusobacterium ulcerans 0 species 6381 Fusobacterium nucleatum 1 851 0 species 0 species 1903 Fusobacterium hwasookii 1 1583098 20 family 0 1129771 11 Leptotrichiaceae 1 5680 0 genus 1 754 Sneathia 1 2 168808 753 Sneathia amnii 1 187101 0 species 5 32067 3175 Leptotrichia 1 13 0 genus 806 Leptotrichia buccalis 1 40542 0 species 0 no rank 3 2633022 2356 Leptotrichia sp. oral taxon 498 860 712368 1 species 0 1 1785996 891 Leptotrichia sp. oral taxon 847 0 species 0 species 1 712357 605 Leptotrichia sp. oral taxon 212 2 32068 694 1 Sebaldella 1 0 genus 0 species 1 826 693 Sebaldella termitidis genus 0 1037 34104 1 0 species 1037 Streptobacillus moniliformis 1 34105 0 phylum 9 1202 1 Elusimicrobia 9 74152 4 447830 629 1 Endomicrobia 2 0 class 2 order 0 1783344 3 1 Endomicrobiales 627 625 2 1783343 0 family 625 2 1408194 0 genus 0 species 304 Endomicrobium proavitum 1 1408281 0 species 1 1408204 321 Candidatus Endomicrobium trichonymphae 0 no rank 325 1 99260 167965 1 uncultured Termite group 1 bacterium 325 species 0 239 Elusimicrobia 1 3 641853 0 class 2 237 641854 2 order 0 237 2 641876 0 family 423604 2 1 Elusimicrobium 237 2 genus 0 0 species 235 Elusimicrobium minutum 1 423605 57723 18 2264 phylum 0 Acidobacteriia 1 1968 204432 15 class 0 7 7 order 0 332160 4 1 Solibacterales 504 0 family 3 497 1 Solibacteraceae 3 332161 2 332162 494 1 Candidatus Solibacter 7 0 genus 0 species 487 Candidatus Solibacter usitatus 1 332163 1 Acidobacteriales 1457 204433 10 order 0 23 9 204434 1434 Acidobacteriaceae 1 12 0 family 5 genus 0 658061 2 1 Candidatus Koribacter 249 658062 1 Candidatus Koribacter versatilis 244 species 0 11 0 genus 3 940557 457 1 Granulicella 0 species 202 Granulicella mallensis 1 940614 0 species 244 Granulicella tundricola 1 940615 genus 0 287 33973 1 0 species 287 Acidobacterium capsulatum 1 33075 0 genus 429 2 392733 1 392734 218 Terriglobus roseus 0 species species 0 Terriglobus saanensis 211 870903 1 296 Blastocatellia 1 3 1562566 0 class 5 2 0 genus 2 458032 291 1 Chloracidobacterium 289 Chloracidobacterium thermophilum 1 458033 0 species 0 clade 157934 364 1783270 0 clade 352 68336 155772 151475 Bacteroidetes 1 326 976 0 phylum 13 7 1100069 1584 1 Bacteroidetes Order II. Incertae sedis 19 0 order 0 family 5 1565 Rhodothermaceae 1 6 563843 0 no rank 1 1196022 649 649 Rhodothermaceae bacterium RA 1 1779382 0 species 2 29548 519 1 Rhodothermus 7 0 genus species 0 Rhodothermus marinus 512 29549 1 genus 0 3 Salinibacter 1 392 146918 2 0 species 389 Salinibacter ruber 1 146919 768503 59 1 Cytophagia 15886 31 class 0 768507 58 1 Cytophagales 15855 68 order 0 561 Amoebophilaceae 1 4 1501348 0 family 4 0 genus 223 1 273135 no rank 0 223 2641185 1 0 species 223 Cardinium endosymbiont of Encarsia pergandiella 1 249402 334 1 Candidatus Amoebophilus 2 281119 0 genus 8 1 281120 326 Candidatus Amoebophilus asiaticus 0 species 15 family 0 1853232 16 Hymenobacteraceae 1 3528 0 genus 32 2236 Hymenobacter 1 8 89966 Hymenobacter sedentarius 368 1411621 1 species 0 0 no rank 1528 5 2615202 species 0 1385663 1 Hymenobacter sp. DG25A 204 0 species 433 Hymenobacter sp. PAMC 26628 1 1484118 species 0 Hymenobacter sp. DG25B 193 1385664 1 1356852 1 Hymenobacter sp. APR13 322 species 0 0 species 1 1484116 376 Hymenobacter sp. PAMC 26554 1446467 1 Hymenobacter swuensis 308 species 0 6 0 genus 3 323449 532 Pontibacter 1 1 400092 311 Pontibacter korlensis 0 species species 0 Pontibacter akesuensis 215 388950 1 1379908 4 1 Rufibacter 745 2 genus 0 no rank 0 2639626 2 474 species 0 1379910 1 Rufibacter sp. DG31D 258 species 0 1379909 1 Rufibacter sp. DG15C 216 512763 1 Rufibacter tibetensis 269 species 0 family 0 1066 2762301 2 1066 Marivirga 1 2 869806 0 genus 17 0 species 1049 Marivirga tractuosa 1 1006 family 0 1 1 Cytophagaceae 3131 89373 15 202 1 861914 0 genus no rank 0 2620963 1 202 species 0 1834519 1 Fibrella sp. ES10-3-2-2 202 genus 0 4 Dyadobacter 1 330 120831 2 0 species 1 94254 326 Dyadobacter fermentans 385 1 105 0 genus Runella slithyformis 385 106 1 species 0 2 978 568 Cytophaga 1 28 0 genus species 0 985 1 Cytophaga hutchinsonii 540 107 6 1 Spirosoma 1262 27 genus 0 Spirosoma aerolatum 278 1211326 1 species 0 1 2057025 295 Spirosoma sp. HA7 0 species 1379870 1 Spirosoma radiotolerans 236 species 0 species 0 Spirosoma montaniterrae 212 1178516 1 Spirosoma rigui 214 564064 1 species 0 2 319458 383 1 Leadbetterella 3 0 genus species 0 316068 1 Leadbetterella byssophila 380 6 0 family 3 1853234 497 Persicobacteraceae 1 2 genus 0 59740 2 Persicobacter 1 491 489 2664020 1 no rank 0 species 0 Persicobacter sp. JZB09 489 1085624 1 0 family 2 2249 1 Flammeovirgaceae 4 200667 2 59739 1127 Flammeovirga 1 1 0 genus no rank 0 2637820 1 1126 species 0 Flammeovirga sp. MY04 1126 1191459 1 1 340671 1120 0 no rank 1120 Flammeovirgaceae bacterium 311 1 1257021 0 species 1 Cyclobacteriaceae 3191 563798 10 family 0 15 0 genus 8 1462 Cyclobacterium 1 3 68288 Cyclobacterium amurskyense 721 320787 1 species 0 1 104 733 Cyclobacterium marinum 0 species Belliella 1 888 232244 2 genus 0 8 0 species 880 Belliella baltica 1 232259 2 246875 504 Algoriphagus 1 3 0 genus Algoriphagus sp. M8-2 501 1727163 1 species 0 322 1 Echinicola 2 390846 0 genus 9 0 species 313 Echinicola vietnamensis 1 390884 6 family 0 1937968 3 1 Bernardetiaceae 1564 5 0 genus 2 1937972 1558 1 Bernardetia 1 999 1553 Bernardetia litoralis 0 species 59 0 class 148 117743 110515 1 Flavobacteriia 200644 147 1 Flavobacteriales 110456 95 order 0 family 0 742 1853230 2 2 332102 742 1 Fluviicola 3 0 genus 0 species 739 Fluviicola taffensis 1 191579 family 0 1333713 2 534 534 1 Owenweeksia 2 267986 0 genus 15 519 Owenweeksia hongkongensis 1 253245 0 species 1268 313602 4 no rank 0 5 genus 0 1940138 2 1 Candidatus Walczuchella 214 0 species 209 Candidatus Walczuchella monophlebidarum 1 1415657 1054 1 Candidatus Sulcia 2 336809 0 genus 2 species 0 336810 1 Candidatus Sulcia muelleri 1052 family 0 403 Flavobacteriaceae 1 90360 49546 104 genus 0 396 112040 1 63186 1 Zobellia galactanivorans 396 species 0 3 111500 1462 Muricauda 1 14 0 genus species 0 516051 1 Muricauda lutaonensis 635 813 Muricauda ruestringensis 1 111501 0 species 5 76831 2693 Myroides 1 60 0 genus no rank 0 1258 2642485 2 Myroides sp. ZB35 647 1458492 1 species 0 Myroides sp. A21 611 1583100 1 species 0 1 76832 645 Myroides odoratimimus 0 species 0 species 1 480520 730 Myroides profundi 4069 Maribacter 1 5 252356 0 genus 45 species 0 1178778 1 Maribacter cobaltidurans 691 3 2615042 3333 0 no rank 0 species 1 313603 1003 Maribacter sp. HTCC2170 0 species 1207 Maribacter sp. 1_2014MBL_MicDiv 1 1644130 species 0 Maribacter sp. T28 1123 1836467 1 0 no rank 1677 2 61432 1384 Flavobacteriaceae bacterium UJ101 1 1150389 0 species 1 531844 293 Flavobacteriaceae bacterium 3519-10 0 species 22 0 genus 4 326319 3073 Dokdonia 1 1 326320 1043 Dokdonia donghaensis 0 species no rank 0 2008 2615033 2 species 0 313590 1 Dokdonia sp. MED134 1164 Dokdonia sp. 4H-3-7-5 844 983548 1 species 0 genus 0 3 Formosa 1 2089 225842 3 0 no rank 2 2644710 2086 1 1336795 1210 Formosa sp. Hel3_A1_48 0 species 876 Formosa sp. Hel1_33_131 1 1336794 0 species 1204360 2 Siansivirga 1 1331 2 genus 0 Siansivirga zeaxanthinifaciens 1329 762954 1 species 0 1 Nonlabens 3631 363408 5 genus 0 94 1792 2615035 2 no rank 0 Nonlabens sp. MIC269 1011 1476901 1 species 0 1 2058134 781 Nonlabens sp. MB-3u-79 0 species 1 328515 830 Nonlabens dokdonensis 0 species Nonlabens sediminis 915 319236 1 species 0 2439 1 2700084 0 genus 1 1850246 2439 Lutibacter sp. LPB0138 0 species genus 0 55 1 Polaribacter 10336 52959 6 0 species 1 1774273 2340 Polaribacter vadi no rank 0 5464 196858 3 species 0 Polaribacter sp. ALD11 1615 2058137 1 1529069 1 Polaribacter sp. BM10 1869 species 0 Polaribacter sp. MED152 1980 313598 1 species 0 species 0 Polaribacter reichenbachii 2477 996801 1 854 143222 1 genus 0 2633436 1 854 no rank 0 854 Salegentibacter sp. T436 1 1729720 0 species 1 336276 1490 0 genus 0 no rank 1490 1 2615019 Olleya sp. Bg11-27 1490 2058135 1 species 0 278 1 Robiginitalea 2 252306 0 genus 2 252307 1 Robiginitalea biformata 276 species 0 6 genus 0 292691 5 1 Gramella 2682 844 Gramella forsetii 1 411153 0 species Gramella sp. LPB0144 755 1913577 1 species 0 0 species 619 Gramella sp. SH35 1 2126553 458 Gramella flava 1 1486245 0 species 1 1176327 500 0 genus 0 no rank 1 2636237 500 0 species 500 Aureitalea sp. RR4-38 1 2094025 730 1 178469 0 genus 1 616991 730 Arenibacter algicola 0 species 848 153265 1 genus 0 species 0 101385 1 Aequorivita sublithincola 848 genus 0 6 1 Winogradskyella 3160 286104 3 2 2615021 3154 0 no rank 754409 1 Winogradskyella sp. PG-2 1706 species 0 1 1936080 1448 Winogradskyella sp. J14-2 0 species genus 0 2 1 Psychroflexus 1104 83612 2 0 species 1102 Psychroflexus torquis 1 57029 genus 0 58 1 Capnocytophaga 5485 1016 15 species 0 Capnocytophaga cynodegmi 574 28189 1 2640652 6 2123 no rank 0 1945657 1 Capnocytophaga sp. H2931 504 species 0 455 Capnocytophaga sp. H4358 1 1945658 0 species 0 species 224 Capnocytophaga sp. oral taxon 323 1 1705617 337 Capnocytophaga sp. ChDC OS43 1 209053 0 species 1316596 1 Capnocytophaga sp. oral taxon 878 334 species 0 Capnocytophaga sp. oral taxon 864 269 1316593 1 species 0 0 species 430 Capnocytophaga stomatis 1 1848904 669 Capnocytophaga canimorsus 1 28188 0 species Capnocytophaga haemolytica 211 45243 1 species 0 1019 1 Capnocytophaga sputigena 596 species 0 327575 1 Capnocytophaga leadbetteri 318 species 0 1017 1 Capnocytophaga gingivalis 296 species 0 Capnocytophaga ochracea 210 1018 1 species 0 2 1209327 1272 Flavivirga 1 3 0 genus 1269 Flavivirga eckloniae 1 1803846 0 species genus 0 1366 1518147 1 0 species 1 1790137 1366 Wenyingzhuangia fucanilytica genus 0 417127 1 1119 398743 1 Zunongwangia profunda 1119 species 0 2002 1 Lutibacter 2 358023 0 genus 5 species 0 Lutibacter profundi 1997 1622118 1 0 genus 1172 1 393005 species 0 Tamlana sp. UJ94 1172 2069432 1 1649495 2 1 Seonamhaeicola 1655 2 genus 0 no rank 0 2622645 1 1653 species 0 1936081 1 Seonamhaeicola sp. S2-3 1653 600 1 389486 0 genus no rank 0 600 2648869 1 1 1453352 600 Sediminicola sp. YIK13 0 species genus 0 29 1 Flavobacterium 10506 237 9 0 species 1 312277 1373 Flavobacterium indicum 0 species 975 Flavobacterium branchiophilum 1 55197 1 986 2446 Flavobacterium johnsoniae 0 species 1004 Flavobacterium psychrophilum 1 96345 0 species 0 species 1 1763534 677 Flavobacterium crassostreae 912 Flavobacterium commune 1 1306519 0 species 0 species 1 996 2108 Flavobacterium columnare 0 species 982 Flavobacterium gilvum 1 1492737 1 Tenacibaculum 6899 104267 5 genus 0 14 0 species 2242 Tenacibaculum jejuense 1 584609 0 species 1 669041 1325 Tenacibaculum dicentrarchi 0 species 1 1850252 1882 Tenacibaculum todarodis species 0 Tenacibaculum maritimum 1436 107401 1 291183 4 1 Lacinutrix 5228 38 genus 0 3523 2647285 2 no rank 0 1 2057808 1755 Lacinutrix sp. Bg11-31 0 species Lacinutrix sp. 5H-3-7-4 1768 983544 1 species 0 Lacinutrix venerupis 1667 1486034 1 species 0 1 216431 1295 0 genus species 0 Croceibacter atlanticus 1295 313588 1 0 genus 1 261827 1710 species 0 Algibacter alginicilyticus 1710 1736674 1 Cellulophaga 1 4806 104264 4 genus 0 16 1 76594 1567 Cellulophaga baltica 0 species species 0 Cellulophaga lytica 1673 979 1 Cellulophaga algicola 1550 59600 1 species 0 family 0 12256 2762318 20 no rank 0 6126 2782232 10 0 genus 44 5821 Chryseobacterium 1 9 59732 1 558152 772 Chryseobacterium piperi 0 species 0 species 1 1265445 237 Chryseobacterium camelliae Chryseobacterium indologenes 1245 253 1 species 0 1685010 1 Chryseobacterium glaciei 978 species 0 no rank 0 2593645 3 2016 1 2015076 721 Chryseobacterium sp. T16E-39 0 species species 0 Chryseobacterium sp. IHB B 17019 597 1721091 1 878220 1 Chryseobacterium sp. StRB126 698 species 0 529 Chryseobacterium gallinarum 1 1324352 0 species genus 0 305 2782228 1 536441 1 Chryseobacterium taklimakanense 305 species 0 0 genus 2 1077 Riemerella 1 2 34084 1 34085 1075 Riemerella anatipestifer 0 species genus 0 46 1 Elizabethkingia 3989 308865 6 238 1 Elizabethkingia meningoseptica 516 species 0 0 species 1 1756150 511 Elizabethkingia genomosp. 4 0 species 1 1117645 1471 Elizabethkingia anophelis 0 species 890 Elizabethkingia miricola 1 172045 Elizabethkingia genomosp. 3 555 1756149 1 species 0 0 genus 1 28250 517 0 species 517 Ornithobacterium rhinotracheale 1 28251 1 1013 547 0 genus 0 species 1 1014 547 Weeksella virosa 10 family 0 39782 10 Blattabacteriaceae 1 4664 42 genus 0 34098 9 Blattabacterium 1 4654 species 0 Blattabacterium cuenoti 619 1653831 1 species 0 164514 1 Blattabacterium punctulatus 639 0 no rank 6 2647581 3354 0 species 1 1186051 709 Blattabacterium sp. (Blaberus giganteus) species 0 Blattabacterium sp. (Nauphoeta cinerea) 602 1316444 1 0 species 1 624186 563 Blattabacterium sp. (Blattella germanica) 0 species 1 367488 538 Blattabacterium sp. (Periplaneta americana) Blattabacterium sp. (Mastotermes darwiniensis) 466 39768 1 species 0 476 Blattabacterium sp. (Blatta orientalis) 1 367806 0 species family 0 246874 1 Cryomorphaceae 6 531 1 Ichthyobacteriaceae 3 1755828 0 family 4 2 1755829 527 1 Ichthyobacterium 24 0 genus species 0 Ichthyobacterium seriolicida 503 242600 1 5 0 class 16 1853228 2503 Chitinophagia 1 2498 Chitinophagales 1 15 1853229 0 order 8 14 563835 2490 1 Chitinophagaceae 32 0 family genus 0 3 1 Chitinophaga 592 79328 3 0 species 309 Chitinophaga pinensis 1 79329 2029983 1 Chitinophagaceae bacterium 13 280 species 0 genus 0 2 Filimonas 1 304 649460 2 species 0 Filimonas lacunae 302 477680 1 1 genus 0 398041 2 Flavisolibacter 1 408 0 species 1 1492898 407 Flavisolibacter tropicus 3 genus 0 379899 3 1 Niabella 535 1176587 1 Niabella ginsenosidivorans 256 species 0 276 Niabella soli 1 446683 0 species 1 1769012 291 0 genus no rank 0 2636138 1 291 species 0 Arachidicoccus sp. BS20 291 1850526 1 1 Niastella 328 354354 2 genus 0 5 0 species 323 Niastella koreensis 1 354356 15 class 0 200643 65 Bacteroidia 1 10855 0 order 10 2333 1 Marinilabiliales 10 1970189 0 family 1 1573805 840 0 genus 1 2060722 840 species 0 1717717 1 Marinifilaceae bacterium SPP2 840 3 1471398 489 Prolixibacteraceae 1 2 0 family genus 0 5 Draconibacterium 1 487 1471399 2 1 1168034 482 Draconibacterium orientale 0 species 558415 3 Marinilabiliaceae 1 478 1 family 0 5 0 genus 2 1193324 477 1 Alkalitalea species 0 Alkalitalea saponilacus 472 889453 1 516 1 Salinivirgaceae 2 1970190 0 family 4 genus 0 512 1970191 1 512 Salinivirga cyanobacteriivorans 1 1307839 0 species 54 171549 8507 1 Bacteroidales 48 0 order 815 11 1 Bacteroidaceae 2102 5 family 0 27 0 genus 10 816 2097 1 Bacteroides species 0 290053 1 Bacteroides helcogenes 172 0 species 228 Bacteroides ovatus 1 28116 species 0 28119 1 Bacteroides zoogleoformans 128 270 Bacteroides thetaiotaomicron 1 818 0 species Bacteroides caccae 250 47678 1 species 0 species 0 28113 1 Bacteroides heparinolyticus 116 1 817 472 Bacteroides fragilis 0 species 262 Bacteroides cellulosilyticus 1 246787 0 species 172 Bacteroides caecimuris 1 1796613 0 species family 0 357 2005523 1 genus 0 346096 1 357 357 Paludibacter propionicigenes 1 185300 0 species 1853231 2 223 family 0 genus 0 2 Odoribacter 1 223 283168 2 species 0 Odoribacter splanchnicus 221 28118 1 0 family 2 641 1 Tannerellaceae 7 2005525 genus 0 5 Tannerella 1 324 195950 3 species 0 28112 1 Tannerella forsythia 170 2620507 1 149 no rank 0 species 0 Tannerella sp. oral taxon HOT-286 149 712710 1 genus 0 1 1 Parabacteroides 315 375288 3 823 1 Parabacteroides distasonis 157 species 0 no rank 0 2649774 1 157 species 0 Parabacteroides sp. CT06 157 2025876 1 7 family 0 171551 4 Porphyromonadaceae 1 375 836 3 Porphyromonas 1 368 9 genus 0 837 1 Porphyromonas gingivalis 218 species 0 Porphyromonas asaccharolytica 141 28123 1 species 0 171552 11 1 Prevotellaceae 1769 1 family 0 1 Prevotella 1768 838 10 genus 0 29 0 species 1 589436 104 Prevotella fusca 0 species 1 76123 119 Prevotella enoeca 0 species 1 28132 187 Prevotella melaninogenica 0 species 102 Prevotella denticola 1 28129 species 0 52227 1 Prevotella dentalis 171 0 species 533 Prevotella intermedia 1 28131 species 0 1177574 1 Prevotella jejuni 130 no rank 0 279 2638335 1 Prevotella sp. oral taxon 299 279 652716 1 species 0 114 Prevotella ruminicola 1 839 0 species 0 no rank 1 185291 186 1400053 1 Bacteroidales bacterium CF 186 species 0 family 0 2005520 6 708 0 genus 2 141 Proteiniphilum 1 2 294702 139 Proteiniphilum saccharofermentans 1 1642647 0 species Fermentimonas 1 439 1784836 2 genus 0 1 Fermentimonas caenicola 438 1562970 1 species 0 1 Petrimonas 128 307628 2 genus 0 2 species 0 Petrimonas mucosa 126 1642646 1 2005519 1 147 family 0 genus 0 397864 1 147 Barnesiella viscericola 147 397865 1 species 0 Rikenellaceae 1 362 171550 4 family 0 4 0 genus 219 1 239759 214856 1 Alistipes finegoldii 219 species 0 1611681 2 Mucinivorans 1 139 1 genus 0 138 Mucinivorans hirudinis 1 1433126 0 species 5 333046 1589 0 no rank 705 909656 3 genus 0 Bacteroides salanitronis 237 376805 1 species 0 1 357276 242 Bacteroides dorei 0 species species 0 821 1 Bacteroides vulgatus 226 6 genus 0 511434 2 1 Candidatus Azobacteroides 884 Candidatus Azobacteroides pseudotrichonymphae 878 511435 1 species 0 1937959 6 919 class 0 919 Saprospirales 1 6 1936988 0 order 2 family 0 324 89374 2 genus 0 4 1 Saprospira 324 1007 2 Saprospira grandis 320 1008 1 species 0 2 family 0 1937961 3 Haliscomenobacteraceae 1 593 2 2349 591 Haliscomenobacter 1 7 0 genus species 0 2350 1 Haliscomenobacter hydrossis 584 class 0 10 1 Sphingobacteriia 9200 117747 24 9190 Sphingobacteriales 1 23 200666 0 order 16 84566 22 1 Sphingobacteriaceae 9174 29 family 0 1 Pedobacter 3109 84567 6 genus 0 26 Pedobacter ginsengisoli 778 363852 1 species 0 188932 1 Pedobacter cryoconitis 750 species 0 569 2628915 1 no rank 0 1 1727164 569 Pedobacter sp. PACM 27299 0 species 0 species 519 Pedobacter steynii 1 430522 0 species 467 Pedobacter heparinus 1 984 13 0 genus 4 423349 1180 Mucilaginibacter 1 291 2617802 1 no rank 0 0 species 1 1300914 291 Mucilaginibacter sp. PAMC 26640 0 species 1 1550579 454 Mucilaginibacter gotjawali 1234841 1 Mucilaginibacter sp. BJC16-A31 422 species 0 no rank 0 84568 1 748 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 748 1986952 1 species 0 6 28453 2550 Sphingobacterium 1 39 0 genus Sphingobacterium mizutaii 408 1010 1 species 0 0 no rank 2103 4 2609468 species 0 743722 1 Sphingobacterium sp. 21 402 0 species 1 1933220 499 Sphingobacterium sp. B29 0 species 633 Sphingobacterium sp. ML3W 1 1538644 2003121 1 Sphingobacterium sp. G1-14 569 species 0 2 1649482 816 Pseudopedobacter 1 8 0 genus species 0 151895 1 Pseudopedobacter saltans 808 4 0 genus 2 929509 742 1 Solitalea species 0 995 1 Solitalea canadensis 738 0 phylum 20 1090 2775 0 class 9 2775 1 Chlorobia 20 191410 191411 19 1 Chlorobiales 2766 29 order 0 1 Chlorobiaceae 2737 191412 18 family 0 33 0 no rank 7 274493 1246 1099 2 296 genus 0 1 1100 131 Pelodictyon luteolum 0 species 0 species 1 34090 165 Pelodictyon phaeoclathratiforme 950 Chlorobium 1 5 1091 0 genus 25 219 Chlorobium chlorochromatii 1 337090 0 species species 0 Chlorobium phaeobacteroides 437 1096 1 Chlorobium limicola 160 1092 1 species 0 species 0 1094 1 Chlorobium phaeovibrioides 109 4 256319 644 1 Chlorobaculum 40 0 genus species 0 1097 1 Chlorobaculum tepidum 186 species 0 274539 1 Chlorobaculum parvum 169 species 0 274537 1 Chlorobaculum limnaeum 249 0 genus 21 509 1 Prosthecochloris 5 1101 340 3 2632826 0 no rank 97 Prosthecochloris sp. CIB 2401 1 1868325 0 species 0 species 1 1974213 88 Prosthecochloris sp. HL-130-GSB 155 Prosthecochloris sp. GSB1 1 281093 0 species 0 species 148 Prosthecochloris aestuarii 1 1102 1 100715 305 0 genus 305 Chloroherpeton thalassium 1 100716 0 species phylum 0 1522 1134404 6 Ignavibacteria 1 1522 795747 6 class 0 5 5 795748 1517 1 Ignavibacteriales 6 0 order family 0 795749 2 1154 1154 1 Ignavibacterium 2 795750 0 genus 1 species 0 591197 1 Ignavibacterium album 1153 0 family 2 1334117 357 4 genus 0 1134403 2 Melioribacter 1 357 species 0 Melioribacter roseus 353 1134405 1 phylum 0 384 456828 2 0 genus 1 384 1 Candidatus Cloacimonas 2 456826 Candidatus Cloacimonas acidaminovorans 383 456827 1 species 0 247 2 65842 0 phylum class 0 204430 2 247 218872 2 247 order 0 family 0 204431 2 247 247 1 Fibrobacter 2 832 0 genus 3 833 1 Fibrobacter succinogenes 244 species 0 1531 8 142182 0 phylum 0 class 7 1531 1 Gemmatimonadetes 8 219685 21 0 order 7 219686 1524 1 Gemmatimonadales 1503 Gemmatimonadaceae 1 6 219687 0 family 9 919 Gemmatirosa 1 2 1706036 0 genus 5 species 0 861299 1 Gemmatirosa kalamazoonesis 914 0 genus 9 575 1 Gemmatimonas 3 173479 173480 1 Gemmatimonas aurantiaca 300 species 0 0 species 1 1379270 266 Gemmatimonas phototrophica clade 0 17275 1783257 92 0 phylum 9319 36 203682 414 2517206 3 class 0 414 1 Candidatus Brocadiales 3 1127829 0 order 2 Candidatus Brocadiaceae 1 412 1127830 2 family 0 2 410 380738 1 genus 0 0 species 410 Candidatus Kuenenia stuttgartiensis 1 174633 14 0 class 26 203683 7591 Planctomycetia 1 5 2691354 1338 0 order family 0 2691358 1 204 204 1676125 1 genus 0 204 Thermogutta terrifontis 1 1331910 0 species family 0 1134 2691357 4 1 Rhodopirellula 595 265488 2 genus 0 10 species 0 Rhodopirellula baltica 585 265606 1 1 Pirellula 539 123 2 genus 0 2 537 Pirellula staleyi 1 125 0 species order 0 1993 2691356 7 0 family 22 1993 Isosphaeraceae 1 7 1763524 9 genus 0 1763521 2 Paludisphaera 1 863 0 species 854 Paludisphaera borealis 1 1387353 1 Isosphaera 456 127 2 genus 0 8 448 Isosphaera pallida 1 128 0 species 2 genus 0 466152 2 1 Singulisphaera 652 0 species 1 466153 650 Singulisphaera acidiphila 49 order 0 112 10 1 Planctomycetales 3531 0 family 23 3482 Planctomycetaceae 1 9 126 genus 0 11 Rubinisphaera 1 611 1649490 2 1 119 600 Rubinisphaera brasiliensis 0 species 0 genus 242 1 1649480 120 1 Planctopirus limnophila 242 species 0 1930 Planctomyces 1 3 118 0 genus 19 0 no rank 2 2648843 1911 1636152 1 Planctomyces sp. SH-PL62 899 species 0 species 0 1632864 1 Planctomyces sp. SH-PL14 1012 1936111 2 1 Fuerstia 676 1 genus 0 1 1891926 675 Fuerstia marisgermanicae 0 species order 0 715 2691355 3 Gemmataceae 1 715 1914233 3 family 0 4 genus 0 12 1 Gemmata 711 113 2 699 1 2622970 0 no rank 0 species 699 Gemmata sp. SH-PL17 1 1630693 1314 1 Phycisphaerae 7 666505 0 class 7 order 0 2483366 2 463 0 family 463 2 2483367 genus 0 463 2483368 2 1940790 1 Phycisphaerae bacterium L21-RPul-D3 257 species 0 species 0 1941349 1 Phycisphaerae bacterium ST-PulAB-D4 206 4 666506 844 1 Phycisphaerales 22 0 order Phycisphaeraceae 1 822 666507 3 family 0 16 0 genus 4 806 Phycisphaera 1 2 666508 0 species 802 Phycisphaera mikurensis 1 547188 0 phylum 3 4024 1 Verrucomicrobia 28 74201 class 0 4 Opitutae 1 2057 414999 12 2 order 0 415001 4 1 Puniceicoccales 525 5 0 family 3 415002 523 Puniceicoccaceae 1 518 1 Coraliomargarita 2 442430 0 genus 2 0 species 1 395922 516 Coraliomargarita akajimensis 13 order 0 415000 7 1 Opitutales 1528 family 0 21 1 Opitutaceae 1515 134623 6 574 1 278955 0 no rank Opitutaceae bacterium TAV5 574 794903 1 species 0 genus 0 10 1 Opitutus 462 178440 2 107709 1 Opitutus terrae 452 species 0 4 0 genus 2 1961799 458 1 Lacunisphaera 1 1838286 454 Lacunisphaera limnophila 0 species 6 1955630 645 1 Methylacidiphilae 2 0 class 643 1 Methylacidiphilales 5 717963 0 order 1 Methylacidiphilaceae 1 642 717964 4 family 0 1 2 genus 0 511745 3 Methylacidiphilum 1 641 species 0 Methylacidiphilum infernorum 245 511746 1 1 591154 394 Methylacidiphilum fumariolicum 0 species 2 134549 120 0 class genus 0 4 Candidatus Xiphinematobacter 1 120 134550 2 116 2648876 1 no rank 0 1 1704307 116 Candidatus Xiphinematobacter sp. Idaho Grape 0 species 0 no rank 2 417295 718 Verrucomicrobia bacterium 402 2026799 1 species 0 1 1637999 316 Verrucomicrobia bacterium IMCC26134 0 species 481 203494 5 class 0 order 0 3 Verrucomicrobiales 1 481 48461 5 0 family 2 478 1 Akkermansiaceae 4 1647988 1 Akkermansia 476 239934 3 genus 0 15 219 Akkermansia glycaniphila 1 1679444 0 species species 0 239935 1 Akkermansia muciniphila 242 0 phylum 21 204428 3183 21 204429 3183 1 Chlamydiia 7 0 class 21 0 order 13 51291 2256 Chlamydiales 1 family 0 2235 809 12 1113537 12 2235 no rank 0 0 genus 25 2235 Chlamydia 1 12 810 0 species 245 Chlamydia psittaci 1 83554 Chlamydia abortus 191 83555 1 species 0 0 species 210 Chlamydia avium 1 1457141 0 species 246 Chlamydia caviae 1 83557 1457153 1 Chlamydia gallinacea 216 species 0 0 species 1 85991 250 Chlamydia pecorum Chlamydia suis 132 83559 1 species 0 0 species 1 813 175 Chlamydia trachomatis species 0 Chlamydia muridarum 138 83560 1 1 83556 198 Chlamydia felis 0 species Chlamydia pneumoniae 209 83558 1 species 0 7 1963360 920 Parachlamydiales 1 8 0 order 0 family 156 1 92712 156 1 34093 0 genus species 0 83561 1 Simkania negevensis 156 4 0 family 4 92713 581 1 Parachlamydiaceae 2 genus 0 83551 2 1 Parachlamydia 340 83552 1 Parachlamydia acanthamoebae 338 species 0 0 genus 1 282132 237 1 389348 237 Candidatus Protochlamydia naegleriophila 0 species 1 92714 175 0 family 71666 1 175 genus 0 0 species 175 Waddlia chondrophila 1 71667 0 phylum 3 256845 301 4 class 0 1313211 3 1 Lentisphaeria 301 0 order 5 297 Victivallales 1 2 278082 no rank 0 292 1674876 1 species 0 2094242 1 Victivallales bacterium CCUG 44730 292 448 4 134625 0 phylum class 0 448 1921781 4 1921782 4 1 Kiritimatiellales 448 5 order 0 3 1921783 443 1 Kiritimatiellaceae 2 0 family 2 1921784 441 Kiritimatiella 1 1 0 genus species 0 1307763 1 Kiritimatiella glycovorans 440 172 3 2138240 0 phylum 0 class 172 3 2138243 1 Coprothermobacterales 172 2138246 3 order 0 2 0 family 170 2 2138247 1 genus 0 68335 2 1 Coprothermobacter 170 169 Coprothermobacter proteolyticus 1 35786 0 species 320 2498710 3 clade 0 0 phylum 3 67814 320 693071 3 1 Caldisericia 320 1 class 0 319 1 Caldisericales 2 693072 0 order 1 family 0 318 693073 1 genus 0 693074 1 318 1 693075 318 Caldisericum exile 0 species phylum 0 231 200938 4 4 0 class 4 118001 231 1 Chrysiogenetes Chrysiogenales 1 227 189769 3 order 0 2 225 2 189770 0 family 225 1 Desulfurispirillum 2 393029 0 genus 4 221 Desulfurispirillum indicum 1 936456 0 species 1224 2033 1 Proteobacteria 1147755 171 phylum 0 121253 1 Betaproteobacteria 348 28216 0 class 155 5262 12 119066 0 no rank 171 1 1301080 0 genus 1160784 1 Candidatus Nasuia deltocephalinicola 171 species 0 6 33055 3891 Kinetoplastibacterium 1 21 0 genus 1 994692 986 Candidatus Kinetoplastibacterium desouzaii 0 species 994696 1 Candidatus Kinetoplastibacterium oncopeltii 820 species 0 0 species 1 994695 584 Candidatus Kinetoplastibacterium galatii 0 species 1 33056 820 Candidatus Kinetoplastibacterium crithidii 0 species 660 Kinetoplastibacterium blastocrithidii 1 233181 genus 0 3 Candidatus Accumulibacter 1 394 327159 2 327160 1 Candidatus Accumulibacter phosphatis 391 species 0 5 genus 0 1381133 2 1 Candidatus Profftella 717 669502 1 Candidatus Profftella armatura 712 species 0 genus 0 89 189384 1 0 species 89 Candidatus Tremblaya princeps 1 189385 72 order 0 206351 35 Neisseriales 1 7232 1499392 13 Chromobacteriaceae 1 2774 68 family 0 290 Laribacter 1 2 168470 0 genus 4 286 Laribacter hongkongensis 1 168471 0 species 4 90153 1372 0 no rank 1372 1 Chromobacterium 4 535 0 genus 30 1 2641838 408 0 no rank 0 species 408 Chromobacterium sp. ATCC 53434 1 2059672 1108595 1 Chromobacterium vaccinii 543 species 0 1 536 391 Chromobacterium violaceum 0 species 2 genus 0 187 2 Aquaspirillum 1 242 0 no rank 240 1 2620219 species 0 Aquaspirillum sp. LM1 240 1938604 1 8 0 genus 2 885864 395 1 Jeongeupia no rank 0 2619593 1 387 species 0 Jeongeupia sp. USM3 387 1906741 1 568394 2 1 Pseudogulbenkiania 407 6 genus 0 1 2642558 401 0 no rank species 0 748280 1 Pseudogulbenkiania sp. NH8B 401 family 0 33 Neisseriaceae 1 4386 481 21 1193515 1 302 genus 0 302 Snodgrassella alvi 1 1196083 0 species 7 genus 0 59 3 Vitreoscilla 1 632 no rank 0 343 2627922 1 343 Vitreoscilla sp. C1 1 96942 0 species 282 Vitreoscilla filiformis 1 63 0 species 2171 1 Neisseria 12 482 0 genus 35 164 Neisseria elongata 1 495 0 species 0 species 1 28091 194 Neisseria weaveri 488 1 Neisseria mucosa 129 species 0 296 2 2623750 0 no rank 1 1853276 141 Neisseria sp. 10022 0 species 155 Neisseria sp. KEM232 1 655307 0 species species 0 487 1 Neisseria meningitidis 562 Neisseria zoodegmatis 190 326523 1 species 0 species 0 Neisseria gonorrhoeae 150 485 1 species 0 486 1 Neisseria lactamica 193 0 species 1 1853278 130 Neisseria sp. 10023 species 0 Neisseria sicca 128 490 1 no rank 0 768 421605 1 Neisseriaceae bacterium DSM 100970 768 2052837 1 species 0 2 genus 0 71 2 1 Simonsiella 293 0 species 1 72 291 Simonsiella muelleri 0 genus 187 1 538 0 species 187 Eikenella corrodens 1 539 94889 1 Burkholderiales 232 80840 0 order 765 236 0 family 84 119060 46889 Burkholderiaceae 1 8 genus 0 44013 4 Polynucleobacter 1 1206 1 1835254 370 Polynucleobacter duraquae 0 species 1 576610 246 Polynucleobacter necessarius 0 species species 0 Polynucleobacter asymbioticus 582 576611 1 1 2571159 197 0 genus 0 species 197 Paraburkholderia rhizoxinica 1 412963 102 genus 0 1822464 12 1 Paraburkholderia 5165 species 0 Paraburkholderia sprentiae 444 948107 1 species 0 134537 1 Paraburkholderia fungorum 396 36873 1 Paraburkholderia xenovorans 450 species 0 species 0 Paraburkholderia phenoliruptrix 373 252970 1 0 species 1 169430 446 Paraburkholderia hospita species 0 Paraburkholderia phytofirmans 455 261302 1 no rank 0 2615204 1 498 1 1926494 498 Paraburkholderia sp. SOS3 0 species species 0 Paraburkholderia aromaticivorans 446 2026199 1 452 Paraburkholderia phymatum 1 148447 0 species Paraburkholderia terrae 364 311230 1 species 0 species 0 75105 1 Paraburkholderia caribensis 739 9 106589 5398 Cupriavidus 1 141 0 genus species 0 248026 1 Cupriavidus pinatubonensis 412 0 species 667 Cupriavidus metallidurans 1 119219 68895 1 Cupriavidus basilensis 668 species 0 1 82541 581 Cupriavidus gilardii 0 species 0 species 749 Cupriavidus necator 1 106590 2 2640874 1484 0 no rank 708 Cupriavidus sp. USMAHM13 1 1389192 0 species 1 876364 776 Cupriavidus sp. USMAA2-4 0 species species 0 Cupriavidus sp. USMAA1020 696 367825 1 5 48736 3379 Ralstonia 1 48 0 genus Ralstonia insidiosa 426 190721 1 species 0 species 0 329 1 Ralstonia pickettii 670 0 species 1 105219 542 Ralstonia mannitolilytica Ralstonia solanacearum 1693 305 1 species 0 Pandoraea 1 3318 93217 10 genus 0 45 656178 1 Pandoraea vervacti 341 species 0 Pandoraea sputorum 232 93222 1 species 0 573737 1 Pandoraea oxalativorans 322 species 0 1 93218 315 Pandoraea apista 0 species 632 Pandoraea pulmonicola 1 93221 0 species 93220 1 Pandoraea pnomenusa 426 species 0 species 0 445709 1 Pandoraea thiooxydans 336 0 species 445 Pandoraea norimbergensis 1 93219 656179 1 Pandoraea faecigallinarum 224 species 0 0 genus 478 1 1827195 1 758793 478 Burkholderia sp. RPE64 0 species 41 32008 27512 1 Burkholderia 1024 0 genus species 0 Burkholderia glumae 1067 337 1 no rank 0 4020 2613784 11 359 Burkholderia sp. HB1 1 1678678 0 species 0 species 1 1740162 344 Burkholderia sp. Bp5365 Burkholderia sp. KJ006 359 416344 1 species 0 1 1468409 339 Burkholderia sp. 2002721687 0 species 0 species 1 1097668 547 Burkholderia sp. YI23 species 0 Burkholderia sp. CCGE1001 393 640510 1 1 1795874 238 Burkholderia sp. PAMC 28687 0 species 0 species 1 758796 510 Burkholderia sp. RPE67 Burkholderia sp. CCGE1003 332 640512 1 species 0 0 species 1 1795043 270 Burkholderia sp. PAMC 26561 329 Burkholderia sp. Bp7605 1 1740163 0 species Burkholderia gladioli 1042 28095 1 species 0 0 species 622 Burkholderia plantarii 1 41899 species group 0 87882 19 13723 1 1207504 393 Burkholderia pseudomultivorans 0 species 152500 1 Burkholderia dolosa 387 species 0 0 species 1 488446 348 Burkholderia latens Burkholderia multivorans 1021 87883 1 species 0 0 species 1 101571 1303 Burkholderia ubonensis 427 Burkholderia contaminans 1 488447 0 species 152480 1 Burkholderia ambifaria 586 species 0 1 488731 372 Burkholderia seminalis 0 species 0 species 1 292 2385 Burkholderia cepacia species 0 1503055 1 Burkholderia territorii 325 species 0 488729 1 Burkholderia metallica 312 60550 1 Burkholderia pyrrocinia 316 species 0 0 species 959 Burkholderia lata 1 482957 Burkholderia cenocepacia 1929 95486 1 species 0 0 species 1 95485 722 Burkholderia stabilis 680 Burkholderia vietnamiensis 1 60552 0 species Burkholderia stagnalis 511 1503054 1 species 0 species 0 265293 1 [Pseudomonas] mesoacidophila 425 488732 1 Burkholderia diffusa 322 species 0 6014 111527 7 species group 0 1 13373 619 Burkholderia mallei 0 species species 0 342113 1 Burkholderia oklahomensis 565 370 Burkholderia sp. MSMB617WGS 1 1637831 0 species 0 species 482 Burkholderia sp. MSMB0852 1 1637841 0 species 383 Burkholderia sp. MSMB0266 1 1637837 1008 Burkholderia thailandensis 1 57975 0 species 1 28450 2587 Burkholderia pseudomallei 0 species family 0 104 1 Alcaligenaceae 15538 506 43 5 0 genus 2 90243 284 Oligella 1 0 species 1 90245 279 Oligella urethralis 3 0 genus 2 305976 221 Pusillimonas 1 2640016 1 218 no rank 0 species 0 1007105 1 Pusillimonas sp. T7-7 218 213 genus 0 517 17 1 Bordetella 6564 species 0 Bordetella genomosp. 8 379 1416806 1 species 0 Bordetella pertussis 453 520 1 0 species 1 463025 420 Bordetella bronchialis 94624 1 Bordetella petrii 339 species 0 103855 1 Bordetella hinzii 324 species 0 0 species 1 1416803 323 Bordetella genomosp. 9 0 species 1 35814 185 Bordetella holmesii Bordetella parapertussis 526 519 1 species 0 1 2630031 289 0 no rank 1697043 1 Bordetella sp. H567 289 species 0 463040 1 Bordetella genomosp. 13 396 species 0 species 0 1331258 1 Bordetella pseudohinzii 343 species 0 Bordetella trematum 297 123899 1 0 species 410 Bordetella flabilis 1 463014 species 0 521 1 Bordetella avium 191 1 463024 518 Bordetella genomosp. 6 0 species 1 518 958 Bordetella bronchiseptica 0 species Taylorella 1 1331 29574 3 genus 0 1 species 0 Taylorella equigenitalis 696 29575 1 0 species 634 Taylorella asinigenitalis 1 84590 0 genus 112 4517 Achromobacter 1 6 222 0 species 1 217204 408 Achromobacter insolitus 496 2626865 1 no rank 0 species 0 Achromobacter sp. AONIH1 496 1758194 1 0 species 1816 Achromobacter xylosoxidans 1 85698 1 32002 978 Achromobacter denitrificans 0 species 707 Achromobacter spanius 1 217203 0 species 4 genus 0 1921582 2 1 Orrella 329 325 Orrella dioscoreae 1 1851544 0 species 2 507 671 1 Alcaligenes 4 0 genus 511 1 Alcaligenes faecalis 667 species 0 2 359336 376 Castellaniella 1 12 0 genus 75697 1 Castellaniella defragrans 364 species 0 9 genus 0 290425 3 Advenella 1 442 species 0 Advenella kashmirensis 213 310575 1 species 0 302406 1 Advenella mimigardefordensis 220 genus 0 1472344 1 383 383 Basilea psittacipulmonis 1 1472345 0 species 2 0 genus 2 1100891 316 1 Paenalcaligenes 0 species 1 643674 314 Paenalcaligenes hominis 75682 28 Oxalobacteraceae 1 8734 62 family 0 139 1 846 0 genus 139 Oxalobacter formigenes 1 847 0 species 29580 7 Janthinobacterium 1 2129 78 genus 0 1 55508 379 Janthinobacterium agaricidamnosum 0 species species 0 Janthinobacterium svalbardensis 372 368607 1 1300 2610881 4 no rank 0 1 1236179 267 Janthinobacterium sp. B9-8 0 species Janthinobacterium sp. Marseille 267 375286 1 species 0 400 Janthinobacterium sp. 1_2014MBL_MicDiv 1 1644131 0 species species 0 1938606 1 Janthinobacterium sp. LM6 366 303379 3 Herminiimonas 1 432 9 genus 0 species 0 Herminiimonas arsenicoxydans 206 204773 1 1 1809410 217 Herminiimonas arsenitoxidans 0 species 34 genus 0 963 6 Herbaspirillum 1 1990 298 2624150 1 no rank 0 2025949 1 Herbaspirillum sp. meg3 298 species 0 0 species 1 341045 444 Herbaspirillum hiltneri 294 Herbaspirillum rubrisubalbicans 1 80842 0 species 0 species 1 92645 436 Herbaspirillum frisingense 1 964 484 Herbaspirillum seropedicae 0 species 56 genus 0 149698 6 1 Massilia 2626 2045208 1 Massilia sp. B2 531 species 0 0 species 1 1141883 556 Massilia putida no rank 0 2609279 2 973 1707785 1 Massilia sp. WG5 549 species 0 424 Massilia sp. NR 4-1 1 1678028 0 species species 0 2072590 1 Massilia sp. ZMN-3 510 37 genus 0 202907 4 Collimonas 1 1356 species 0 Collimonas arenae 509 279058 1 1 158899 455 Collimonas fungivorans 0 species Collimonas pratensis 355 279113 1 species 0 0 no rank 515 2 80841 1469502 1 Burkholderiales bacterium GJ-E10 251 species 0 264 Burkholderiales bacterium YL45 1 1834205 0 species 57 80864 17427 Comamonadaceae 1 222 0 family genus 0 2490452 2 521 species 0 Comamonadaceae bacterium B1 246 1458426 1 0 species 1 1458425 275 Comamonadaceae bacterium A1 genus 0 3 1 Limnohabitans 398 665874 3 2 2626134 395 0 no rank 1 1678128 230 Limnohabitans sp. 63ED37-2 0 species 1 1678129 165 Limnohabitans sp. 103DPR2 0 species 6 genus 0 174951 2 1 Ramlibacter 876 94132 1 Ramlibacter tataouinensis 870 species 0 283 4 1 Comamonas 1374 12 genus 0 species 0 285 1 Comamonas testosteroni 637 species 0 225992 1 Comamonas kerstersii 282 species 0 1082851 1 Comamonas serinivorans 443 8 0 genus 3 52972 1055 Polaromonas 1 2638319 1 686 no rank 0 686 Polaromonas sp. JS666 1 296591 0 species 0 species 1 216465 361 Polaromonas naphthalenivorans 0 genus 9 324 Melaminivora 1 2 1649468 no rank 0 315 2641902 1 Melaminivora sp. SC2-9 315 2109913 1 species 0 Ottowia 1 520 219181 3 genus 0 7 0 no rank 1 2645081 198 species 0 Ottowia sp. oral taxon 894 198 1658672 1 2109914 1 Ottowia sp. KADR8-3 315 species 0 0 genus 1 352450 240 2109915 1 Simplicispira sp. SC1-8 240 species 0 1873 1 Delftia 5 80865 0 genus 51 503 Delftia tsuruhatensis 1 180282 0 species 1 80866 426 Delftia acidovorans 0 species no rank 0 893 2613839 2 0 species 476 Delftia sp. Cs1-4 1 742013 1 1920191 417 Delftia sp. HK171 0 species genus 0 1 1 Verminephrobacter 494 364316 2 1 364317 493 Verminephrobacter eiseniae 0 species 7 0 genus 5 28065 1299 Rhodoferax 1 species 0 Rhodoferax antarcticus 268 81479 1 314 Rhodoferax saidenbachensis 1 1484693 0 species 1842727 1 Rhodoferax koreense 421 species 0 species 0 192843 1 Rhodoferax ferrireducens 289 genus 0 258 2678886 1 258 Melaminivora sp. SC2-7 1 2116657 0 species 5 0 genus 2 201096 421 1 Alicycliphilus 0 species 1 179636 416 Alicycliphilus denitrificans 2 238749 315 1 Diaphorobacter 5 0 genus 1546149 1 Diaphorobacter polyhydroxybutyrativorans 310 species 0 5 34072 3464 1 Variovorax 45 0 genus 0 species 1 436515 601 Variovorax boronicumulans 1071 2 663243 0 no rank Variovorax sp. PMC12 634 2126319 1 species 0 0 species 1 1795631 437 Variovorax sp. PAMC 28711 34073 1 Variovorax paradoxus 1747 species 0 2 genus 0 47420 4 Hydrogenophaga 1 1115 0 no rank 817 2 2610897 795665 1 Hydrogenophaga sp. PBC 479 species 0 1842537 1 Hydrogenophaga sp. RAC07 338 species 0 296 Hydrogenophaga crassostreae 1 1763535 0 species 101 0 genus 9 12916 2527 Acidovorax 1 1 80869 312 Acidovorax citrulli 0 species 80867 1 Acidovorax avenae 372 species 0 231 Acidovorax ebreus 1 721785 0 species species 0 Acidovorax sp. NA3 267 553814 1 no rank 0 2684926 4 1244 368 Acidovorax sp. T1 1 1858609 0 species 0 species 251 Acidovorax sp. KKS102 1 358220 232721 1 Acidovorax sp. JS42 323 species 0 1842533 1 Acidovorax sp. RAC01 302 species 0 genus 0 1436289 1 131 1 1436290 131 Candidatus Symbiobacter mobilis 0 species no rank 0 224471 17 5021 species 0 [Polyangium] brachysporum 674 413882 1 genus 0 12 1 Mitsuaria 620 65047 2 1 2648776 608 0 no rank 1658665 1 Mitsuaria sp. 7 608 species 0 2 88 554 Leptothrix 1 18 0 genus 34029 1 Leptothrix cholodnii 536 species 0 6 0 genus 2 318147 362 Paucibacter 1 0 no rank 1 2642959 356 species 0 1768242 1 Paucibacter sp. KCTC 42545 356 501 Methylibium 1 2 316612 0 genus 7 Methylibium petroleiphilum 494 105560 1 species 0 93681 2 Roseateles 1 471 17 genus 0 76731 1 Roseateles depolymerans 454 species 0 8 0 genus 2 32012 496 Thiomonas 1 Thiomonas intermedia 488 926 1 species 0 genus 0 21 Rhizobacter 1 607 212743 2 586 Rhizobacter gummiphilus 1 946333 0 species 8 genus 0 28067 2 Rubrivivax 1 736 1 28068 728 Rubrivivax gelatinosus 0 species 1 Nitrosomonadales 7349 32003 44 order 0 56 Gallionellaceae 1 429 90627 5 family 0 10 genus 0 4 1 Sideroxydans 241 314343 2 0 species 1 63745 237 Sideroxydans lithotrophicus 0 genus 5 178 Gallionella 1 2 96 0 species 1 370405 173 Gallionella capsiferriformans 2008793 5 1 Sterolibacteriaceae 684 16 family 0 2 1054211 372 1 Sulfuritalea 11 0 genus 748811 1 Sulfuritalea hydrogenivorans 361 species 0 296 Methyloversatilis 1 2 378210 0 genus 1 2639971 1 295 no rank 0 1842540 1 Methyloversatilis sp. RAC08 295 species 0 2772226 4 457 family 0 1 Sulfuriferula 219 1778653 2 genus 0 2 0 no rank 217 1 2637784 species 0 1985873 1 Sulfuriferula sp. AH1 217 genus 0 1 Sulfuricella 1 238 935200 2 Sulfuricella denitrificans 237 649841 1 species 0 8 family 0 2008790 3 Thiobacillaceae 1 337 2 genus 0 919 2 Thiobacillus 1 329 327 Thiobacillus denitrificans 1 36861 0 species 30 0 family 14 32011 2718 Methylophilaceae 1 3 81682 337 Methylovorus 1 11 0 genus species 0 Methylovorus glucosotrophus 155 266009 1 0 no rank 171 1 2634027 species 0 887061 1 Methylovorus sp. MP688 171 genus 0 2 Candidatus Methylopumilus 1 1211 1679002 3 1 1581557 924 Candidatus Methylopumilus planktonicus 0 species 0 species 1 1581680 285 Candidatus Methylopumilus turicensis Methylotenera 1 687 359407 3 genus 0 2 Methylotenera mobilis 293 359408 1 species 0 species 0 1055487 1 Methylotenera versatilis 392 Methylophilus 1 233 16 2 genus 0 3 230 2630143 1 no rank 0 1 1662285 230 Methylophilus sp. TWE2 0 species 4 0 genus 2 404 220 1 Methylobacillus species 0 Methylobacillus flagellatus 216 405 1 16 0 family 12 206379 2668 1 Nitrosomonadaceae Nitrosomonas 1 2208 914 7 genus 0 19 44577 1 Nitrosomonas ureae 357 species 0 Nitrosomonas communis 455 44574 1 species 0 2609265 2 830 no rank 0 261292 1 Nitrosomonas sp. Is79A3 432 species 0 species 0 Nitrosomonas sp. AL212 398 153948 1 Nitrosomonas europaea 203 915 1 species 0 0 species 1 916 344 Nitrosomonas eutropha 0 genus 6 444 Nitrosospira 1 4 35798 species 0 1231 1 Nitrosospira multiformis 148 Nitrosospira briensis 139 35799 1 species 0 0 species 151 Nitrosospira lacus 1 1288494 94 0 order 22 206389 5526 1 Rhodocyclales 19 family 0 75787 6 1 Rhodocyclaceae 930 1 Aromatoleum 360 551759 2 genus 0 2 551760 1 Aromatoleum aromaticum 358 species 0 5 genus 0 146937 2 1 Azospira 294 1 146939 289 Azospira oryzae 0 species 0 no rank 257 1 75788 1898103 1 Rhodocyclaceae bacterium 257 species 0 0 family 72 4192 1 Zoogloeaceae 12 2008794 genus 0 56 Thauera 1 2256 33057 6 2609274 2 985 no rank 0 2005884 1 Thauera sp. K11 426 species 0 0 species 559 Thauera sp. MZ1T 1 85643 0 species 406 Thauera aromatica 1 59405 0 species 1 96773 385 Thauera chlorobenzoica 1 1134435 424 Thauera humireducens 0 species 1864 1 Azoarcus 5 12960 0 genus 38 Azoarcus sp. SY39 455 2067960 1 species 0 species 0 Azoarcus olearius 357 418699 1 1014 2 2629479 0 no rank species 0 Azoarcus sp. KH32C 536 748247 1 0 species 478 Azoarcus sp. CIB 1 198107 3 0 family 3 2008795 310 Azonexaceae 1 Dechloromonas 1 307 73029 2 genus 0 8 0 species 299 Dechloromonas aromatica 1 259537 0 no rank 2 33809 840 1904640 1 Betaproteobacteria bacterium GR16-43 485 species 0 species 0 543913 1 beta proteobacterium CB 355 197 68525 76732 0 subphylum 61 class 0 28221 125 Deltaproteobacteria 1 36089 62 order 0 69541 24 Desulfuromonadales 1 4929 1623 1 Desulfuromonadaceae 9 213421 0 family 15 1 Desulfuromonas 771 890 3 genus 0 6 1 2614637 371 0 no rank species 0 1823759 1 Desulfuromonas sp. DDH964 371 Desulfuromonas soudanensis 394 1603606 1 species 0 7 0 genus 5 18 837 Pelobacter 1 species 0 29542 1 Pelobacter acetylenicus 192 0 species 1 19 203 Pelobacter carbinolicus 197 2620299 1 no rank 0 1 1842532 197 Pelobacter sp. SFB93 0 species Pelobacter propionicus 238 29543 1 species 0 33 family 0 213422 14 1 Geobacteraceae 3244 28231 11 Geobacter 1 2933 59 genus 0 194 Geobacter lovleyi 1 313985 0 species 1 345632 309 Geobacter pickeringii 0 species species 0 Geobacter daltonii 202 1203471 1 731 2627627 2 no rank 0 Geobacter sp. M21 331 443144 1 species 0 443143 1 Geobacter sp. M18 400 species 0 0 species 243 Geobacter sulfurreducens 1 35554 0 species 278 Geobacter bemidjiensis 1 225194 351604 1 Geobacter uraniireducens 443 species 0 0 species 1 1340425 227 Geobacter anodireducens 0 species 247 Geobacter metallireducens 1 28232 1 Geoalkalibacter 278 392332 2 genus 0 6 483547 1 Geoalkalibacter subterraneus 272 species 0 order 0 2 Syntrophobacterales 1 738 213462 10 0 family 2 213465 214 1 Syntrophobacter 214 29526 2 genus 0 7 species 0 119484 1 Syntrophobacter fumaroxidans 207 7 0 family 7 213468 522 1 Syntrophaceae 1 0 genus 2 2357 154 Desulfomonile 1 0 species 153 Desulfomonile tiedjei 1 2358 0 genus 2 203 Syntrophus 1 2 43773 316277 1 Syntrophus aciditrophicus 201 species 0 60892 2 Desulfobacca 1 158 2 genus 0 1 60893 156 Desulfobacca acetoxidans 0 species 0 order 4 397 Desulfarculales 1 4 453227 10 family 0 453228 3 1 Desulfarculaceae 393 453229 2 1 Desulfarculus 383 8 genus 0 species 0 453230 1 Desulfarculus baarsii 375 213115 25 1 Desulfovibrionales 4733 35 order 0 4 213116 417 Desulfomicrobiaceae 1 1 0 family 2 genus 0 898 3 1 Desulfomicrobium 416 132132 1 Desulfomicrobium orale 172 species 0 Desulfomicrobium baculatum 242 899 1 species 0 0 family 2 213117 151 151 Desulfohalobium 1 2 45662 0 genus 1 0 species 1 45663 150 Desulfohalobium retbaense 0 family 24 4130 Desulfovibrionaceae 1 18 194924 29 genus 0 872 9 Desulfovibrio 1 2040 species 0 Candidatus Desulfovibrio trichonymphae 79 1725232 1 901 1 Desulfovibrio piger 151 species 0 species 0 876 1 Desulfovibrio desulfuricans 391 2593640 1 122 no rank 0 species 0 Desulfovibrio sp. G11 122 631220 1 species 0 Desulfovibrio fairfieldensis 150 44742 1 0 species 1 58180 205 Desulfovibrio alaskensis 184917 1 Desulfovibrio magneticus 356 species 0 species 0 881 1 Desulfovibrio vulgaris 557 1 2582840 274 0 genus species 0 873 1 Desulfovibrio africanus 274 1 0 genus 2 41707 771 Lawsonia 1 770 Lawsonia intracellularis 1 29546 0 species 1 Pseudodesulfovibrio 691 2035811 4 genus 0 17 0 species 148 Pseudodesulfovibrio profundus 1 57320 0 species 1 182210 250 Pseudodesulfovibrio aespoeensis 1 1716143 276 Pseudodesulfovibrio indicus 0 species 330 1 2794998 0 genus species 0 Desulfovibrio salexigens 330 880 1 19 213118 3268 Desulfobacterales 1 27 0 order 9 213119 2046 1 Desulfobacteraceae 7 0 family 218207 2 1 Desulfatibacillum 644 5 genus 0 0 species 1 259354 639 Desulfatibacillum alkenivorans Desulfococcus 1 472 896 3 genus 0 8 0 species 1 897 216 Desulfococcus multivorans 1 181663 248 Desulfococcus oleovorans 0 species genus 0 4 Desulfobacterium 1 279 2295 2 2296 1 Desulfobacterium autotrophicum 275 species 0 0 genus 1 28222 644 1 28223 644 Desulfobacula toluolica 0 species 1195 1 Desulfobulbaceae 9 213121 0 family 13 2 893 220 1 Desulfobulbus 4 0 genus 1986146 1 Desulfobulbus sp. ORNL 216 species 0 3 0 genus 2 53318 343 Desulfocapsa 1 0 species 340 Desulfocapsa sulfexigens 1 65555 Desulfotalea 1 410 109168 2 genus 0 5 0 species 405 Desulfotalea psychrophila 1 84980 genus 0 3 Desulfurivibrio 1 209 427922 2 0 species 1 427923 206 Desulfurivibrio alkaliphilus 1 0 order 5 213113 1305 Desulfurellales 1 family 0 2 1 Desulfurellaceae 1304 117942 4 0 genus 1 84404 374 Hippea maritima 374 84405 1 species 0 33001 2 1 Desulfurella 928 1 genus 0 927 Desulfurella acetivorans 1 33002 0 species 0 order 187 20658 1 Myxococcales 37 29 11777 80811 25 suborder 0 1 Archangiaceae 3407 39 8 family 0 51 Cystobacter 1 854 42 2 genus 0 5 species 0 Cystobacter fuscus 849 43 1 genus 0 9 Melittangium 1 707 44 2 1 83453 698 Melittangium boletus 0 species 40 1 592 genus 0 species 0 41 1 Stigmatella aurantiaca 592 Archangium 1 1203 47 2 genus 0 4 species 0 48 1 Archangium gephyra 1199 9 31 5142 Myxococcaceae 1 22 0 family 32 5 1 Myxococcus 3543 118 genus 0 1297742 1 Myxococcus hansupus 631 species 0 species 0 Myxococcus fulvus 1513 33 1 0 species 698 Myxococcus stipitatus 1 83455 1 34 583 Myxococcus xanthus 0 species 83461 3 1 Corallococcus 1577 39 genus 0 692 Myxococcus macrosporus 1 35 0 species 846 Corallococcus coralloides 1 184914 0 species 3 1524213 537 1 Vulgatibacteraceae 5 0 family 0 genus 5 532 Vulgatibacter 1 2 1524214 species 0 1391653 1 Vulgatibacter incomptus 527 2691 Anaeromyxobacteraceae 1 5 1524215 0 family 3 genus 0 40 Anaeromyxobacter 1 2688 161492 4 no rank 0 1442 2620896 2 species 0 Anaeromyxobacter sp. K 688 447217 1 0 species 754 Anaeromyxobacter sp. Fw109-5 1 404589 species 0 Anaeromyxobacter dehalogenans 1206 161493 1 6934 80812 8 suborder 0 0 family 12 5291 1 Polyangiaceae 5 49 0 genus 6 1111 Chondromyces 1 2 50 species 0 Chondromyces crocatus 1105 52 1 4168 Sorangium 1 2 39643 0 genus 11 species 0 56 1 Sorangium cellulosum 4157 1643 1 Sandaracinaceae 3 1055686 0 family 2 Sandaracinus 1 1641 1055688 2 genus 0 11 927083 1 Sandaracinus amylolyticus 1630 species 0 1760 224462 3 suborder 0 3 224464 1760 1 Kofleriaceae 7 0 family Haliangium 1 1753 162027 2 genus 0 18 Haliangium ochraceum 1735 80816 1 species 0 16 class 0 29547 72 1 Epsilonproteobacteria 40643 0 order 3 704 1 Nautiliales 5 235899 0 family 267 2 2795691 269258 2 1 Nitratiruptor 267 3 genus 0 264 1 2624044 0 no rank 0 species 1 387092 264 Nitratiruptor sp. SB155-2 1 Nautiliaceae 434 224467 2 family 0 2 0 genus 432 1 191291 species 0 244787 1 Nautilia profundicola 432 Campylobacterales 1 39923 213849 66 order 0 98 family 0 2771471 4 1197 143 286130 1 genus 0 Sulfuricurvum kujiense 143 148813 1 species 0 4 genus 0 202746 3 1 Sulfurimonas 1054 39766 1 Sulfurimonas denitrificans 612 species 0 species 0 202747 1 Sulfurimonas autotrophica 438 Campylobacteraceae 1 33328 72294 41 family 0 60 9 57665 2506 Sulfurospirillum 1 36 0 genus 0 species 1 194424 227 Sulfurospirillum halorespirans 0 species 329 Sulfurospirillum deleyianum 1 65553 no rank 0 1201 2618290 3 0 species 1 1581011 500 Sulfurospirillum sp. UCH001 351 Sulfurospirillum sp. SL2-1 1 1986224 0 species species 0 220622 1 Sulfurospirillum sp. JPD-1 350 species 0 44674 1 Sulfurospirillum barnesii 307 1 66821 226 Sulfurospirillum multivorans 0 species 0 species 180 Sulfurospirillum cavolei 1 366522 no rank 0 9569 2321108 5 3 28196 5009 Arcobacter 1 57 0 genus 0 species 3098 Arcobacter butzleri 1 28197 0 species 1 28199 1854 Arcobacter nitrofigilis no rank 0 2356 2321207 1 0 species 1 944547 2356 Arcobacter sp. L 2321187 1 2204 genus 0 2204 Arcobacter sp. LPB0137 1 1850254 0 species 0 genus 161 21193 1 Campylobacter 26 194 0 species 851 Campylobacter peloridis 1 488546 Campylobacter volucris 879 1031542 1 species 0 species 0 197 1 Campylobacter jejuni 1804 species 0 75658 1 Campylobacter lanienae 380 522485 1 Campylobacter avium 454 species 0 1 199 531 Campylobacter concisus 0 species 0 species 1392 Campylobacter coli 1 195 76517 1 Campylobacter hominis 523 species 0 1 1965231 1286 Campylobacter pinnipediorum 0 species species 0 Campylobacter hyointestinalis 716 198 1 species 0 497724 1 Campylobacter subantarcticus 961 260714 1 Campylobacter insulaenigrae 1058 species 0 0 species 119 Campylobacter gracilis 1 824 1 196 835 Campylobacter fetus 0 species 1244531 1 Campylobacter iguaniorum 543 species 0 0 species 1 200 132 Campylobacter curvus species 0 374106 1 Campylobacter cuniculorum 690 0 no rank 4 2593542 2511 1 1660073 422 Campylobacter sp. RM6137 0 species species 0 Campylobacter sp. RM8964 621 1660074 1 Campylobacter sp. RM16704 920 1500960 1 species 0 0 species 548 Campylobacter sp. RM12175 1 1660076 species 0 28898 1 Campylobacter helveticus 428 827 1 Campylobacter ureolyticus 1032 species 0 206 1 Campylobacter sputorum 1498 species 0 species 0 Campylobacter lari 2409 201 1 family 0 7 Helicobacteraceae 1 4725 72293 15 genus 0 1 Wolinella 1 117 843 2 species 0 Wolinella succinogenes 116 844 1 209 12 1 Helicobacter 4601 10 genus 0 138563 1 Helicobacter cetorum 542 species 0 species 0 214 1 Helicobacter felis 109 species 0 213 1 Helicobacter cinaedi 274 210 1 Helicobacter pylori 1762 species 0 Helicobacter acinonychis 209 212 1 species 0 species 0 37372 1 Helicobacter bilis 373 species 0 Helicobacter hepaticus 428 32025 1 213 Helicobacter himalayensis 1 1591088 0 species species 0 Helicobacter typhlonius 262 76936 1 1 217 169 Helicobacter mustelae 0 species 250 2593540 1 no rank 0 1 222136 250 Helicobacter sp. MIT 01-6242 0 species family 0 575 2771472 5 443 Sulfurovum 1 3 265570 0 genus 14 1 2646778 185 0 no rank species 0 Sulfurovum sp. NBC37-1 185 387093 1 244 Sulfurovum lithotrophicum 1 206403 0 species 132 Nitratifractor 1 2 269260 0 genus 2 species 0 269261 1 Nitratifractor salsuginis 130 Oligoflexia 1 2683 1553900 10 class 0 7 1 Bacteriovoracales 1529 2024979 4 order 0 3 1652132 2 1 Halobacteriovoraceae 1085 3 family 0 1082 1652133 1 genus 0 0 species 1 97084 1082 Halobacteriovorax marinus 263369 1 441 family 0 1 146784 441 0 genus species 0 960 1 Bacteriovorax stolpii 441 0 order 7 1147 1 Bdellovibrionales 5 213481 4 family 0 213483 4 1 Bdellovibrionaceae 1140 genus 0 14 1 Bdellovibrio 1136 958 3 796 Bdellovibrio bacteriovorus 1 959 0 species species 0 Bdellovibrio exovorus 326 453816 1 2 class 0 580370 6 1 Zetaproteobacteria 494 order 0 11 1 Mariprofundales 492 580371 5 family 0 5 Mariprofundaceae 1 481 580372 4 7 genus 0 377315 3 Mariprofundus 1 476 1 1921087 245 Mariprofundus ferrinatatus 0 species 0 species 224 Mariprofundus aestuarium 1 1921086 28211 568 1 Alphaproteobacteria 451228 390 class 0 0 order 644 105258 Rhizobiales 1 210 356 39 0 family 15 119045 9550 1 Methylobacteriaceae 9 407 5700 1 Methylobacterium 335 0 genus 0 species 1 418223 593 Methylobacterium phyllosphaerae 0 species 766 Methylobacterium nodulans 1 114616 334852 1 Methylobacterium oryzae 608 species 0 3 2615210 1842 0 no rank 0 species 1 426117 812 Methylobacterium sp. 4-46 575 Methylobacterium sp. C1 1 1479019 0 species 0 species 1 925818 455 Methylobacterium sp. AMS5 270351 1 Methylobacterium aquaticum 942 species 0 1 31998 614 Methylobacterium radiotolerans 0 species 2282523 3 3076 genus 0 223967 1 Methylobacterium populi 919 species 0 462 Methylobacterium zatmanii 1 29429 0 species 1 408 1695 Methylobacterium extorquens 0 species 21 genus 0 186650 2 1 Microvirga 735 species 0 1882682 1 Microvirga ossetica 714 69277 20 Phyllobacteriaceae 1 9874 78 family 0 743 1 Hoeflea 2 274591 0 genus 13 0 no rank 1 2614931 730 730 Hoeflea sp. IMCC20628 1 1620421 0 species 6724 1 Mesorhizobium 9 68287 0 genus 261 39645 1 Mesorhizobium ciceri 1005 species 0 0 species 792 Mesorhizobium opportunistum 1 593909 2066070 1 Mesorhizobium japonicum 795 species 0 1 1670800 756 Mesorhizobium sp. B7 0 species species 0 Mesorhizobium amorphae 777 71433 1 species 0 381 1 Mesorhizobium loti 845 686 Mesorhizobium australicum 1 536018 0 species 0 no rank 807 1 325217 807 Mesorhizobium sp. WSM1497 1 278153 0 species 31988 2 Aminobacter 1 803 12 genus 0 Aminobacter aminovorans 791 83263 1 species 0 0 genus 14 656 1 Nitratireductor 2 245876 1 472175 642 Nitratireductor basaltis 0 species 1 Chelativorans 387 449972 2 genus 0 3 no rank 0 2643807 1 384 species 0 266779 1 Chelativorans sp. BNC1 384 4 0 genus 2 28100 483 Phyllobacterium 1 Phyllobacterium zundukense 479 1867719 1 species 0 23 family 0 335928 7 1 Xanthobacteraceae 2182 9 genus 0 279 2 Xanthobacter 1 719 1 280 710 Xanthobacter autotrophicus 0 species 17 0 genus 2 6 602 1 Azorhizobium 1 7 585 Azorhizobium caulinodans 0 species 1 Starkeya 838 152053 2 genus 0 23 0 species 1 921 815 Starkeya novella 2036754 4 Chelatococcaceae 1 1621 6 family 0 1 Chelatococcus 1615 28209 3 genus 0 66 0 no rank 1 2638111 903 903 Chelatococcus sp. CO-6 1 1702325 0 species 444444 1 Chelatococcus daeguensis 646 species 0 0 family 13 3291 Brucellaceae 1 20 118882 5 528 1768 1 Ochrobactrum 45 0 genus Ochrobactrum pituitosum 415 571256 1 species 0 species 0 271865 1 Ochrobactrum sp. A44 422 0 species 1 419475 428 Ochrobactrum pseudogrignonense species 0 529 1 Ochrobactrum anthropi 458 genus 0 615 Brucella 1 1510 234 14 47 Brucella abortus 1 235 0 species 413 2632610 4 no rank 0 0 species 120 Brucella sp. 141012304 1 1885919 23 Brucella sp. 2002734562 1 1891098 0 species 0 species 139 Brucella sp. 09RB8910 1 1844051 0 species 1 1149952 131 Brucella sp. 09RB8471 Brucella suis 35 29461 1 species 0 0 species 1 120577 67 Brucella ceti species 0 120576 1 Brucella pinnipedialis 86 1 236 18 Brucella ovis 0 species species 0 36855 1 Brucella canis 68 0 species 40 Brucella melitensis 1 29459 Brucella vulpis 104 981386 1 species 0 17 Brucella microti 1 444163 0 species family 0 6 Methylocystaceae 1 1633 31993 6 938 Methylocystis 1 3 133 0 genus 37 655015 1 Methylocystis bryophila 448 species 0 2625913 1 453 no rank 0 species 0 Methylocystis sp. SC2 453 187303 1 2 425 689 Methylosinus 1 18 0 genus species 0 426 1 Methylosinus trichosporium 671 4 0 family 3 119043 873 Rhodobiaceae 1 869 Parvibaculum 1 2 256616 0 genus 17 256618 1 Parvibaculum lavamentivorans 852 species 0 no rank 0 1879 119042 6 0 genus 12 493 Methyloceanibacter 1 2 1484898 0 species 481 Methyloceanibacter caenitepidi 1 1384459 genus 0 18 Pseudorhodoplanes 1 659 1734920 2 0 species 1 1235591 641 Pseudorhodoplanes sinuspersici 0 genus 18 727 Hartmannibacter 1 2 1572860 species 0 1482074 1 Hartmannibacter diazotrophicus 709 family 0 2 Beijerinckiaceae 1 910 45404 5 2 532 415 1 Beijerinckia 13 0 genus Beijerinckia indica 402 533 1 species 0 genus 0 11 1 Methylocella 493 120652 2 species 0 Methylocella silvestris 482 199596 1 26 41294 19193 Bradyrhizobiaceae 1 175 0 family 1073 2 Rhodopseudomonas 1 4365 63 genus 0 1076 1 Rhodopseudomonas palustris 4302 species 0 17 0 genus 2 1649510 551 1 Variibacter species 0 1333996 1 Variibacter gotjawalensis 534 820 Nitrobacter 1 3 911 0 genus 13 species 0 912 1 Nitrobacter hamburgensis 428 Nitrobacter winogradskyi 379 913 1 species 0 5 85413 3373 Bosea 1 137 0 genus 1 1526658 944 Bosea vaviloviae 0 species 3 2653178 2292 0 no rank species 0 1842539 1 Bosea sp. RAC05 868 1 1792307 677 Bosea sp. PAMC 26642 0 species 2015316 1 Bosea sp. AS-1 747 species 0 2 40136 519 Oligotropha 1 1 0 genus 0 species 1 40137 518 Oligotropha carboxidovorans 1 Bradyrhizobium 9390 374 11 genus 0 350 1 44255 868 Bradyrhizobium oligotrophicum 0 species species 0 1355477 1 Bradyrhizobium diazoefficiens 1304 species 0 Bradyrhizobium japonicum 1246 375 1 0 no rank 6 2631580 4891 826 Bradyrhizobium sp. ORS 285 1 115808 0 species 0 species 826 Bradyrhizobium sp. ORS 278 1 114615 1 376 717 Bradyrhizobium sp. 0 species species 0 288000 1 Bradyrhizobium sp. BTAi1 922 species 0 2057741 1 Bradyrhizobium sp. SK17 821 0 species 1 1223566 779 Bradyrhizobium sp. CCGE-LA001 731 Bradyrhizobium icense 1 1274631 0 species 47 0 family 19 45401 6245 1 Hyphomicrobiaceae 12 0 genus 2 1082930 511 1 Pelagibacterium 1 531813 499 Pelagibacterium halotolerans 0 species 59282 2 Blastochloris 1 636 17 genus 0 619 Blastochloris viridis 1 1079 0 species 29407 2 1 Rhodoplanes 852 24 genus 0 0 no rank 828 1 2619116 Rhodoplanes sp. Z2-YC6860 828 674703 1 species 0 1495 Hyphomicrobium 1 4 81 0 genus 64 0 species 1 53399 653 Hyphomicrobium denitrificans species 0 1427356 1 Hyphomicrobium nitrativorans 378 no rank 0 2619925 1 400 species 0 717785 1 Hyphomicrobium sp. MC1 400 5 0 genus 2 119044 398 1 Filomicrobium 1608628 1 Candidatus Filomicrobium marinum 393 species 0 1 Rhodomicrobium 433 1068 2 genus 0 10 1 1069 423 Rhodomicrobium vannielii 0 species 4 46913 1873 Devosia 1 55 0 genus 3 196773 1818 0 no rank species 0 Devosia sp. I507 530 2083786 1 0 species 1 1736675 750 Devosia sp. A16 1 1643450 538 Devosia sp. H5989 0 species 82115 53 Rhizobiaceae 1 28283 225 family 0 1 Shinella 901 323620 2 genus 0 7 2643062 1 894 no rank 0 species 0 Shinella sp. HZN7 894 879274 1 6174 10 227292 0 no rank 8 genus 0 106591 3 1 Ensifer 1100 460 Ensifer sojae 1 716925 0 species species 0 Ensifer adhaerens 632 106592 1 7 28105 5074 Sinorhizobium 1 118 0 genus 1201 2613772 2 no rank 0 0 species 688 Sinorhizobium sp. RAC02 1 1842534 794846 1 Sinorhizobium sp. CCBAU 05631 513 species 0 0 species 407 Sinorhizobium medicae 1 110321 1 382 1114 Sinorhizobium meliloti 0 species 0 species 723 Sinorhizobium americanum 1 194963 1511 663276 1 species group 0 0 species 1511 Sinorhizobium fredii 1 380 34 227290 16620 0 no rank genus 0 90 1 Agrobacterium 4132 357 7 Agrobacterium vitis 461 373 1 species 0 0 no rank 924 2 2632611 species 0 Agrobacterium sp. H13-3 393 861208 1 531 Agrobacterium sp. RAC06 1 1842536 0 species species 0 Agrobacterium rhizogenes 414 359 1 2243 1183400 2 species group 0 1 1176649 471 Agrobacterium fabrum 0 species Agrobacterium tumefaciens 1772 358 1 species 0 857 Neorhizobium 1 2 1525371 0 genus 14 399 1 Neorhizobium galegae 843 species 0 Rhizobium 1 11631 379 25 genus 0 826 Rhizobium gallicum 575 56730 1 species 0 species 0 384 1 Rhizobium leguminosarum 2655 0 species 1 396 908 Rhizobium phaseoli 2613769 19 4865 no rank 0 0 species 1 1703962 5 Rhizobium sp. N1341 0 species 334 Rhizobium sp. S41 1 1869170 1981173 1 Rhizobium sp. NXC14 311 species 0 1 1125847 432 Rhizobium sp. NT-26 0 species species 0 Rhizobium sp. TAL182 90 2020313 1 0 species 1 1703966 67 Rhizobium sp. N731 1 424182 376 Rhizobium sp. IRBG74 0 species 1 1914541 324 Rhizobium sp. Y9 0 species 2020312 1 Rhizobium sp. CIAT894 381 species 0 species 0 Rhizobium sp. N324 403 1703969 1 species 0 2028343 1 Rhizobium sp. 10195 427 1 1703967 7 Rhizobium sp. N741 0 species Rhizobium sp. IE4771 347 1301032 1 species 0 0 species 67 Rhizobium sp. N1314 1 1703961 5 Rhizobium sp. N113 1 1703960 0 species 1 2048897 430 Rhizobium sp. NXC24 0 species 2020311 1 Rhizobium sp. Kim5 351 species 0 species 0 1571470 1 Rhizobium sp. ACO-34A 504 0 species 1 1703968 4 Rhizobium sp. N871 species 0 29449 1 Rhizobium etli 1361 species 0 398 1 Rhizobium tropici 441 4363 Liberibacter 1 6 34019 0 genus 115 Candidatus Liberibacter solanacearum 817 556287 1 species 0 species 0 34021 1 Candidatus Liberibacter asiaticus 683 34020 1 Candidatus Liberibacter africanus 717 species 0 Candidatus Liberibacter americanus 1012 309868 1 species 0 0 species 1 1273132 1019 Liberibacter crescens 6 0 family 7 255475 2680 1 Aurantimonadaceae 0 genus 94 2006 Martelella 1 4 293088 1 1486262 497 Martelella endophytica 0 species 1 293089 751 Martelella mediterranea 0 species 0 no rank 1 2629616 664 Martelella sp. AD-3 664 686597 1 species 0 414371 2 1 Aureimonas 668 22 genus 0 0 no rank 646 1 2615206 1 1349819 646 Aureimonas sp. AU20 0 species 17 0 family 18 772 16400 Bartonellaceae 1 773 17 1 Bartonella 16383 383 genus 0 6964 6 2645622 0 no rank 1933912 1 Bartonella sp. Raccoon60 1199 species 0 Bartonella sp. WD16.2 1161 1933904 1 species 0 1084 Bartonella sp. 1-1C 1 515256 0 species species 0 Bartonella sp. JB63 1167 1933907 1 1169 Bartonella sp. JB15 1 1933906 0 species 0 species 1184 Bartonella sp. A1379B 1 1933910 species 0 Bartonella clarridgeiae 1038 56426 1 1 1686310 914 Bartonella apis 0 species 1 33047 907 Bartonella vinsonii 0 species 1094 Bartonella bacilliformis 1 774 0 species 803 1 Bartonella quintana 809 species 0 879 Bartonella ancashensis 1 1318743 0 species 922 Bartonella henselae 1 38323 0 species 0 species 545 Bartonella australis 1 388640 species 0 Bartonella grahamii 1016 33045 1 Bartonella tribocorum 912 85701 1 species 0 no rank 0 5770 82117 8 genus 0 29 Phreatobacter 1 919 1632780 2 species 0 1868589 1 Phreatobacter sp. S-12 890 2 62654 3155 0 clade genus 0 25 Candidatus Puniceispirillum 1 3155 767891 2 species 0 Candidatus Puniceispirillum marinum 3130 767892 1 0 genus 3 664 Micavibrio 1 2 213485 0 species 661 Micavibrio aeruginosavorus 1 349221 991903 2 Polymorphum 1 1032 47 genus 0 Polymorphum gilvum 985 991904 1 species 0 4 0 order 4 1191478 336 Magnetococcales 1 family 0 1 Magnetococcaceae 1 332 1191479 3 2 162171 331 1 Magnetococcus 2 0 genus species 0 1124597 1 Magnetococcus marinus 329 1 Caulobacterales 7774 204458 20 order 0 36 76892 19 Caulobacteraceae 1 7738 150 family 0 125 0 genus 7 41275 2656 Brevundimonas 1 no rank 0 2622653 3 1275 0 species 376 Brevundimonas sp. DS20 1 1532555 0 species 1 1938605 501 Brevundimonas sp. LM2 1827469 1 Brevundimonas sp. GW460-12-10-14-LB2 398 species 0 452 Brevundimonas subvibrioides 1 74313 0 species 0 species 1 588932 426 Brevundimonas naejangsanensis 1 41276 378 Brevundimonas vesicularis 0 species 96 0 genus 6 75 3511 Caulobacter 1 species 0 69395 1 Caulobacter henricii 512 Caulobacter segnis 555 88688 1 species 0 no rank 0 636 2648921 1 0 species 636 Caulobacter sp. K31 1 366602 718 Caulobacter mirabilis 1 69666 0 species 155892 1 Caulobacter vibrioides 994 species 0 81440 1 373 no rank 0 373 Caulobacteraceae bacterium OTSz_A_272 1 1759059 0 species 76890 2 Asticcacaulis 1 360 7 genus 0 species 0 78587 1 Asticcacaulis excentricus 353 688 Phenylobacterium 1 2 20 0 genus 15 species 0 Phenylobacterium zucineum 673 284016 1 56 766 26563 1 Rickettsiales 20 0 order no rank 0 1699067 1 1879 0 species 1879 Rickettsiales bacterium Ac37b 1 1528098 0 family 25 10732 Rickettsiaceae 1 28 775 10035 33988 25 tribe 0 8 genus 0 69474 2 Orientia 1 1610 Orientia tsutsugamushi 1602 784 1 species 0 1 Rickettsia 8425 780 23 genus 0 768 species group 0 1129742 2 1674 0 species 1 788 641 Rickettsia canadensis 33990 1 Rickettsia bellii 1033 species 0 905 1 114295 0 no rank 905 Rickettsia endosymbiont of Bemisia tabaci 1 337479 0 species 0 species group 1839 2 114292 Rickettsia prowazekii 906 782 1 species 0 1 785 933 Rickettsia typhi 0 species 3239 17 114277 0 species group 0 species 75 Rickettsia philipii 1 1105106 783 1 Rickettsia rickettsii 87 species 0 35794 1 Rickettsia slovaca 43 species 0 1 781 56 Rickettsia conorii 0 species 0 species 1 47589 301 Rickettsia peacockii Rickettsia massiliae 94 35791 1 species 0 787 1 Rickettsia australis 578 species 0 Rickettsia parkeri 57 35792 1 species 0 species 0 Rickettsia akari 416 786 1 0 species 63 Rickettsia africae 1 35788 1 33989 123 Rickettsia amblyommatis 0 species species 0 Rickettsia monacensis 370 109232 1 1 226665 81 Rickettsia heilongjiangensis 0 species 33992 1 Rickettsia rhipicephali 149 species 0 Rickettsia felis 558 42862 1 species 0 0 species 81 Rickettsia japonica 1 35790 107 Rickettsia montanensis 1 33991 0 species 2 0 genus 2 2115980 672 1 Candidatus Phycorickettsia species 0 Candidatus Phycorickettsia trachydisci 670 2115978 1 1328881 3 Candidatus Midichloriaceae 1 807 2 family 0 2 411566 805 Candidatus Midichloria 1 5 0 genus 0 species 1 234827 800 Candidatus Midichloria mitochondrii 23 942 13125 Anaplasmataceae 1 22 0 family 4 33993 912 1 Neorickettsia 6 0 genus 951 1 Neorickettsia sennetsu 285 species 0 329 Neorickettsia risticii 1 950 0 species species 0 33994 1 Neorickettsia helminthoeca 292 34 0 genus 6 943 5767 Ehrlichia 1 no rank 0 106181 1 1039 1039 Ehrlichia sp. HF 1 391036 0 species 0 species group 4 106178 4694 0 species 1121 Ehrlichia chaffeensis 1 945 species 0 779 1 Ehrlichia ruminantium 1306 1 35795 960 Ehrlichia muris 0 species Ehrlichia canis 1307 944 1 species 0 tribe 0 5806 952 8 0 genus 138 5806 Wolbachia 1 8 953 no rank 0 2640676 7 5668 species 0 Wolbachia endosymbiont of Cimex lectularius 588 246273 1 66084 1 Wolbachia sp. wRi 737 species 0 1 80849 639 Wolbachia endosymbiont of Brugia malayi 0 species 77038 1 Wolbachia endosymbiont of Drosophila simulans 1531 species 0 species 0 Wolbachia endosymbiont of Onchocerca ochengi 717 100901 1 708 Wolbachia endosymbiont of Onchocerca volvulus 1 77551 0 species 1 163164 748 Wolbachia endosymbiont of Drosophila melanogaster 0 species 3 genus 0 768 4 Anaplasma 1 618 species group 0 106179 1 265 265 Anaplasma phagocytophilum 1 948 0 species 0 species 170 Anaplasma centrale 1 769 770 1 Anaplasma marginale 180 species 0 4 order 0 1921002 8 1 Holosporales 2375 1777752 3 1 Candidatus Paracaedibacteraceae 646 5 family 0 8 genus 0 1521255 2 Candidatus Paracaedibacter 1 641 species 0 91604 1 Candidatus Paracaedibacter acanthamoebae 633 2100208 3 1 Caedimonadaceae 876 3 family 0 4 0 genus 2 1509243 873 Candidatus Nucleicultrix 1 1 1509244 869 Candidatus Nucleicultrix amoebiphila 0 species 44746 1 849 family 0 0 no rank 1 204454 849 species 0 endosymbiont of Acanthamoeba sp. UWC8 849 86106 1 0 order 6 665 Parvularculales 1 4 255473 9 family 0 255474 3 Parvularculaceae 1 659 20 genus 0 208215 2 Parvularcula 1 650 208216 1 Parvularcula bermudensis 630 species 0 67 204441 29753 Rhodospirillales 1 135 0 order 1 Acetobacteraceae 10472 433 35 family 0 129 2 genus 0 320496 2 1 Neoasaia 250 0 species 248 Neoasaia chiangmaiensis 1 320497 1525 Acidiphilium 1 3 522 0 genus 65 species 0 Acidiphilium multivorum 747 62140 1 524 1 Acidiphilium cryptum 713 species 0 1 genus 0 153497 2 Kozakia 1 296 0 species 1 153496 295 Kozakia baliensis 40 0 genus 5 1434011 1612 Komagataeibacter 1 1 28448 604 Komagataeibacter xylinus 0 species 284 Komagataeibacter medellinensis 1 1177712 0 species species 0 Komagataeibacter europaeus 295 33995 1 389 Komagataeibacter nataicola 1 265960 0 species 13 genus 0 441 3 1 Gluconobacter 759 0 species 246 Gluconobacter albidus 1 318683 Gluconobacter oxydans 500 442 1 species 0 1549 1 Roseomonas 3 125216 0 genus 52 1 257708 769 Roseomonas gilardii 0 species no rank 0 728 2617492 1 0 species 1 2018065 728 Roseomonas sp. FDAARGOS_362 434 8 1 Acetobacter 2703 48 genus 0 0 species 1 438 936 Acetobacter pasteurianus 1 65959 278 Acetobacter pomorum 0 species 0 species 1 104102 356 Acetobacter tropicalis 1076596 1 Acetobacter persici 232 species 0 0 subgenus 294 1 151157 species 0 435 1 Acetobacter aceti 294 species 0 Acetobacter senegalensis 314 446692 1 1633874 1 Acetobacter oryzifermentans 245 species 0 Granulibacter 1 637 364409 2 genus 0 4 species 0 364410 1 Granulibacter bethesdensis 633 0 genus 9 587 Gluconacetobacter 1 2 89583 0 species 1 33996 578 Gluconacetobacter diazotrophicus 2 0 genus 2 91914 244 1 Asaia Asaia bogorensis 242 91915 1 species 0 2 genus 0 1602345 2 1 Parasaccharibacter 181 1 1510841 179 Parasaccharibacter apium 0 species 31 41295 19146 Rhodospirillaceae 1 242 0 family 1 Haematospirillum 393 1804663 2 genus 0 4 1 1549855 389 Haematospirillum jordaniae 0 species 1543705 2 1 Nitrospirillum 973 9 genus 0 28077 1 Nitrospirillum amazonense 964 species 0 22 genus 0 1081 3 1 Rhodospirillum 1609 0 species 748 Rhodospirillum rubrum 1 1085 species 0 34018 1 Rhodospirillum centenum 839 1 Azospirillum 6413 191 5 genus 0 182 species 0 193 1 Azospirillum lipoferum 2301 1 1226968 706 Azospirillum humicireducens 0 species 192 1 Azospirillum brasilense 1878 species 0 528244 1 Azospirillum thiophilum 1346 species 0 0 genus 24 1150 1 Tistrella 2 171436 1 171437 1126 Tistrella mobilis 0 species 2 1263978 1597 1 Candidatus Endolissoclinum 5 0 genus species 0 1263979 1 Candidatus Endolissoclinum faulkneri 1592 7 0 genus 2 1543704 682 Niveispirillum 1 675 Niveispirillum cyanobacteriorum 1 1612173 0 species 158 0 genus 5 13134 3531 Magnetospirillum 1 1 55518 1013 Magnetospirillum gryphiswaldense 0 species 2617991 2 1598 no rank 0 Magnetospirillum sp. XM-1 762 1663591 1 species 0 836 Magnetospirillum sp. ME-1 1 1639348 0 species species 0 Magnetospirillum magneticum 762 84159 1 0 genus 5 549 1 Pararhodospirillum 2 1612157 544 Pararhodospirillum photometricum 1 1084 0 species 12 genus 0 1182780 2 1 Magnetospira 594 2685734 1 582 no rank 0 1288970 1 Magnetospira sp. QH-2 582 species 0 3 168934 1413 Thalassospira 1 29 0 genus Thalassospira sp. CSC3H3 693 2048283 1 species 0 1 220697 691 Thalassospira xiamenensis 0 species 179 order 0 204457 82 1 Sphingomonadales 38453 26778 Sphingomonadaceae 1 59 41297 0 family 311 genus 0 478 2709685 1 species 0 Sphingorhabdus flavimaris 478 266812 1 541 2 Zymomonas 1 779 9 genus 0 0 species 1 542 770 Zymomonas mobilis 5 0 genus 2 1649486 679 1 Rhizorhabdus species 0 1850238 1 Rhizorhabdus dicambivorans 674 1434046 3 1 Sphingorhabdus 971 18 genus 0 2614947 2 953 no rank 0 0 species 509 Sphingorhabdus sp. YGSMI21 1 2077182 species 0 1806885 1 Sphingorhabdus sp. M41 444 235 0 genus 15 13687 8548 1 Sphingomonas 1 Sphingomonas wittichii 1702 160791 2 species 0 812 0 strain 1 1283312 890 Sphingomonas sp. DC-6 species 0 1560345 1 Sphingomonas panacis 526 no rank 0 196159 6 3156 488 Sphingomonas sp. LM7 1 1938607 0 species 1 1327635 516 Sphingomonas sp. Cra20 0 species species 0 Sphingomonas sp. KC8 456 1030157 1 0 species 1 1961362 416 Sphingomonas sp. NIC1 Sphingomonas sp. LK11 744 1390395 1 species 0 Sphingomonas sp. MM-1 536 745310 1 species 0 Sphingomonas melonis 441 152682 1 species 0 species 0 397260 1 Sphingomonas sanxanigenens 718 578 Sphingomonas koreensis 1 93064 0 species 582 Sphingomonas hengshuiensis 1 1609977 0 species species 0 1549858 1 Sphingomonas taxi 610 genus 0 398 2685927 1 1921510 1 Sphingomonas sp. JJ-A5 398 species 0 5 165696 2159 1 Novosphingobium 70 0 genus species 0 48935 1 Novosphingobium aromaticivorans 450 species 0 Novosphingobium resinovorum 632 158500 1 205844 1 Novosphingobium pentaromativorans 490 species 0 0 no rank 517 1 2644732 species 0 702113 1 Novosphingobium sp. PP1Y 517 0 genus 10 832 Citromicrobium 1 2 72173 2630544 1 822 no rank 0 1 1634516 822 Citromicrobium sp. JL477 0 species genus 0 166 1 Sphingopyxis 5133 165697 10 2122 4 2614943 0 no rank 665 Sphingopyxis sp. LPB0140 1 1913578 0 species Sphingopyxis sp. MG 521 1866325 1 species 0 0 species 554 Sphingopyxis sp. QXT-31 1 1357916 0 species 1 292913 382 Sphingopyxis sp. 113P3 0 species 1 33052 384 Sphingopyxis terrae 597 Sphingopyxis granuli 1 267128 0 species 434 Sphingopyxis alaskensis 1 117207 0 species Sphingopyxis macrogoltabida 930 33050 1 species 0 species 0 Sphingopyxis fribergensis 500 1515612 1 0 genus 6 623 Blastomonas 1 2 150203 no rank 0 2626550 1 617 617 Blastomonas sp. RAC04 1 1842535 0 species genus 0 239 1 Sphingobium 5867 165695 15 species 0 Sphingobium chlorophenolicum 422 46429 1 species 0 1332080 1 Sphingobium baderi 313 0 species 331 Sphingobium herbicidovorans 1 76947 373 Sphingobium indicum 1 332055 0 species Sphingobium cloacae 372 120107 1 species 0 0 species 1 1673076 363 Sphingobium hydrophobicum 0 species 1 332056 418 Sphingobium japonicum 2420 2611147 6 no rank 0 1855519 1 Sphingobium sp. EP60837 342 species 0 627192 1 Sphingobium sp. SYK-6 371 species 0 species 0 484429 1 Sphingobium sp. YBL2 471 1315974 1 Sphingobium sp. TKS 442 species 0 1 1843368 451 Sphingobium sp. RAC03 0 species 0 species 1 407020 343 Sphingobium sp. MI1205 Sphingobium yanoikuyae 616 13690 1 species 0 0 family 97 11496 1 Erythrobacteraceae 22 335929 no rank 0 2800788 6 3057 1106 Porphyrobacter 1 3 1111 0 genus 87 0 no rank 2 2683265 1019 0 species 485 Porphyrobacter HT-58-2 1 2023229 0 species 1 1896196 534 Porphyrobacter sp. LM 6 genus 0 143 Erythrobacter 1 1951 1041 3 species 0 39960 1 Erythrobacter litoralis 1240 0 species 1 1112 568 Porphyrobacter neustonensis 884 2 2800686 0 genus 1 692370 440 Altererythrobacter dongtanensis 0 species 1 1982042 444 Altererythrobacter mangrovi 0 species 2800685 1 512 genus 0 512 Altererythrobacter marensis 1 543877 0 species Croceicoccus 1 1175 1295327 3 genus 0 36 species 0 450378 1 Croceicoccus marinus 683 species 0 Croceicoccus naphthovorans 456 1348774 1 514 1 2800682 0 genus species 0 Altererythrobacter namhicola 514 645517 1 genus 0 1111 2800681 2 502682 1 Erythrobacter gangjinensis 553 species 0 species 0 1648404 1 Erythrobacter atlanticus 558 1 Altererythrobacter 1423 361177 4 genus 0 153 295 Altererythrobacter ishigakiensis 1 476157 0 species 436 Altererythrobacter atlanticus 1 1267766 0 species 361183 1 Altererythrobacter epoxidivorans 539 species 0 genus 0 2723 1855416 2 species 0 Erythrobacter flavus 2145 192812 1 species 0 Erythrobacter seohaensis 578 266951 1 0 order 2 2800059 604 family 0 2800061 2 604 7 genus 0 74317 2 Maricaulis 1 604 1 74318 597 Maricaulis maris 0 species 0 order 2432 6 2800060 0 family 54 2432 Hyphomonadaceae 1 6 69657 1363 1 Hyphomonas 3 85 0 genus 25 2630699 1 831 no rank 0 0 species 831 Hyphomonas sp. Mor2 1 1906738 81032 1 Hyphomonas neptunium 507 species 0 2 2723 1015 Hirschia 1 7 0 genus 0 species 1 2724 1008 Hirschia baltica 1 Rhodobacterales 54697 204455 91 order 0 110 0 family 748 54587 1 Rhodobacteraceae 90 31989 19 genus 0 227873 2 Pannonibacter 1 763 0 species 1 121719 744 Pannonibacter phragmitetus 2 191028 1076 1 Leisingera 9 0 genus species 0 133924 1 Leisingera methylohalidivorans 1067 Sulfitobacter 1 2708 60136 3 genus 0 9 no rank 0 1693 196795 1 1917485 1 Sulfitobacter sp. AM1-D1 1693 species 0 1402135 1 Sulfitobacter pseudonitzschiae 1006 species 0 299261 1 866 genus 0 0 species 1 299262 866 Tateyamaria omphalii genus 0 4 1 Halocynthiibacter 553 1579315 2 species 0 Halocynthiibacter arcticus 549 1579316 1 58842 2 1 Sagittula 1163 9 genus 0 no rank 0 1154 2624628 1 species 0 Sagittula sp. P11 1154 2009329 1 5 302485 6034 1 Phaeobacter 87 0 genus Phaeobacter inhibens 2159 221822 1 species 0 species 0 Phaeobacter porticola 580 1844006 1 1 60890 1776 Phaeobacter gallaeciensis 0 species 1432 Phaeobacter piscinae 1 1580596 0 species 0 genus 6 721 1 Jannaschia 2 188905 no rank 0 2645469 1 715 Jannaschia sp. CCS1 715 290400 1 species 0 genus 0 24 1 Octadecabacter 1574 53945 4 Octadecabacter antarcticus 537 1217908 1 species 0 species 0 Octadecabacter arcticus 588 53946 1 1 1458307 425 Octadecabacter temperatus 0 species genus 0 2 Thioclava 1 747 285107 2 1915078 1 Thioclava nitratireducens 745 species 0 13 0 genus 3 92944 962 1 Ketogulonicigenium Ketogulonicigenium robustum 392 92947 1 species 0 557 Ketogulonicigenium vulgare 1 92945 0 species 719 1 1649279 0 genus 1 379347 719 Ruegeria mobilis 0 species genus 0 2267 263377 2 species 0 Thiobacimonas profunda 1193 1229727 1 0 no rank 1074 1 2640570 1 1792508 1074 Yangia sp. CCB-MM3 0 species genus 0 67 1 Rhodovulum 3025 34008 4 Rhodovulum sulfidophilum 1310 35806 1 species 0 0 no rank 1648 2 2631432 0 species 847 Rhodovulum sp. MB263 1 308754 1 1564506 801 Rhodovulum sp. P5 0 species 904 1 2211641 0 genus Loktanella vestfoldensis 904 245188 1 species 0 10 0 genus 2 1097466 1020 Defluviimonas 1 0 species 1010 Defluviimonas alba 1 1335048 1 0 genus 2 1759396 471 Marivivens 1 0 no rank 1 2622455 470 470 Marivivens sp. JLT3646 1 1920883 0 species 65 0 genus 5 1060 3886 Rhodobacter 1 1061 1 Rhodobacter capsulatus 670 species 0 no rank 0 196779 2 1542 species 0 1850250 1 Rhodobacter sp. LPB0142 762 Rhodobacter sp. CZR27 780 2033869 1 species 0 Rhodobacter sphaeroides 1609 1063 1 species 0 3 genus 0 1609958 2 1 Confluentimicrobium 1070 0 no rank 1 2643318 1067 0 species 1067 Confluentimicrobium sp. EMB200-NS6 1 1609966 0 genus 685 1 1284657 1284658 1 Planktomarina temperata 685 species 0 367771 2 Marinovum 1 1390 14 genus 0 1376 Marinovum algicola 1 42444 0 species 0 no rank 1147 2 58840 500 Rhodobacteraceae bacterium 1 1904441 0 species 647 Rhodobacteraceae bacterium QY30 1 2033435 0 species 2433 3 1 Roseobacter 1581 11 genus 0 species 0 Roseobacter denitrificans 764 2434 1 species 0 42443 1 Roseobacter litoralis 806 2029 1 Ruegeria 3 97050 0 genus 16 species 0 89184 1 Ruegeria pomeroyi 1411 1 2625375 602 0 no rank species 0 292414 1 Ruegeria sp. TM1040 602 2 74030 888 1 Roseovarius 6 0 genus species 0 Roseovarius mucosus 882 215743 1 4 478070 2180 Labrenzia 1 49 0 genus 0 no rank 2 2648686 1473 species 0 Labrenzia sp. VG12 811 2021862 1 0 species 662 Labrenzia sp. CP4 1 1674922 1 187304 658 Labrenzia aggregata 0 species 901 1 159345 0 genus species 0 Roseibacterium elongatum 901 159346 1 0 genus 2 Thalassococcus 1 436357 6 genus 0 360528 2 Pelagibaca 1 1242 1250539 1 Pelagibaca abyssi 1236 species 0 265 9 1 Paracoccus 6116 122 genus 0 680 246570 1 no rank 0 0 species 680 Paracoccus sp. BM15 1 1529068 1945662 1 Paracoccus contaminans 562 species 0 582 Paracoccus aminophilus 1 34003 0 species 0 species 1 2065379 755 Paracoccus sp. CBA4604 686 Paracoccus aminovorans 1 34004 0 species Paracoccus yeei 1011 147645 1 species 0 Paracoccus zhejiangensis 854 1077935 1 species 0 266 1 Paracoccus denitrificans 864 species 0 0 genus 3 939 Dinoroseobacter 1 2 309512 1 215813 936 Dinoroseobacter shibae 0 species 13 0 genus 5 875170 2849 Celeribacter 1 1 1758178 709 Celeribacter ethanolicus 0 species species 0 Celeribacter marinus 449 1397108 1 Celeribacter indicus 866 1208324 1 species 0 812 Celeribacter manganoxidans 1 1411902 0 species Antarctobacter 1 835 74032 2 genus 0 14 1 74033 821 Antarctobacter heliothermus 0 species 0 genus 9 523 1 Rhodobaca 2 119541 0 species 514 Rhodobaca barguzinensis 1 441209 genus 0 245186 1 Loktanella 3 176158 Pelagibacterales 1 9 54526 0 order 24 1655514 6 1 Pelagibacteraceae 164647 58 family 0 3 198251 69072 1 Candidatus Pelagibacter 28 0 genus 1 2647897 10837 0 no rank 0 species 1 1002672 10837 Candidatus Pelagibacter sp. IMCC9063 198252 1 Candidatus Pelagibacter ubique 58207 species 0 95517 1655516 2 no rank 0 species 0 744985 1 alpha proteobacterium HIMB59 18412 859653 1 alpha proteobacterium HIMB5 77105 species 0 11487 Candidatus Fonsibacter 1 2 2045213 0 genus 39 species 0 Candidatus Fonsibacter ubiquis 11448 1925548 1 494421 1 Gammaproteobacteria 897 1236 0 class 642 135615 3 316 order 0 868 3 Cardiobacteriaceae 1 316 5 family 0 2 869 311 Dichelobacter 1 2 0 genus 1 870 309 Dichelobacter nodosus 0 species 17 order 0 135623 44 Vibrionales 1 146490 1 Vibrionaceae 146473 641 43 family 0 91 0 genus 16 3595 1 Photobacterium 4 657 species 0 1295392 1 Photobacterium gaetbulicola 317 species 0 Photobacterium profundum 590 74109 1 1 38293 2672 Photobacterium damselae 0 species 286 1 Grimontia 2 246861 0 genus 2 0 species 284 Grimontia hollisae 1 673 511678 4 Aliivibrio 1 1959 6 genus 0 species 0 Aliivibrio fischeri 723 668 1 40269 1 Aliivibrio salmonicida 615 species 0 80852 1 Aliivibrio wodanis 615 species 0 30 662 138721 Vibrio 1 576 0 genus species 0 Vibrio breoganii 335 553239 1 species 0 Vibrio tritonius 431 1435069 1 525 Vibrio scophthalmi 1 45658 0 species species 0 1534743 1 Vibrio hyugaensis 1068 0 species 1 55601 834 Vibrio anguillarum 10 717610 54260 0 species group species 0 670 1 Vibrio parahaemolyticus 1773 species 0 Vibrio owensii 2954 696485 1 0 species 1 669 3008 Vibrio harveyi 0 species 753 Vibrio natriegens 1 691 1383 Vibrio rotiferianus 1 190895 0 species 2 2315253 1188 0 species subgroup species 0 150340 1 Vibrio antiquarius 391 1 50719 797 Vibrio diabolicus 0 species Vibrio alginolyticus 2003 663 1 species 0 0 species 39978 Vibrio campbellii 1 680 1220 Vibrio jasicida 1 766224 0 species 0 species group 1 1891919 815 1 29498 815 Vibrio tubiashii 0 species 0 species 945 Vibrio cholerae 1 666 species 0 190893 1 Vibrio coralliilyticus 71739 0 species 469 Vibrio fluvialis 1 676 species 0 29494 1 Vibrio furnissii 362 2614977 2 734 no rank 0 Vibrio sp. 2521-89 284 2014742 1 species 0 1116375 1 Vibrio sp. EJY3 450 species 0 Vibrio vulnificus 1874 672 1 species 0 Vibrio qinghaiensis 371 2025808 1 species 0 species 0 212663 1 Vibrio tasmaniensis 706 species 0 Vibrio tapetis 527 52443 1 species 0 Vibrio mimicus 463 674 1 Vibrio gazogenes 435 687 1 species 0 species 0 28173 1 Vibrio nigripulchritudo 1252 1821 Paraphotobacterium 1 2 2042066 0 genus 3 Paraphotobacterium marinum 1818 1755811 1 species 0 0 order 16 321 1 Nevskiales 4 1775403 family 0 568386 1 Sinobacteraceae 4 family 0 2689614 2 301 Steroidobacter 1 301 469322 2 genus 0 19 1 465721 282 Steroidobacter denitrificans 0 species 65962 1 Alteromonadales 104 135622 0 order 90 30 72275 26310 Alteromonadaceae 1 37 0 family 89404 3 Glaciecola 1 1215 9 genus 0 619 2618684 1 no rank 0 1 983545 619 Glaciecola sp. 4H-3-7+YE-5 0 species species 0 300231 1 Glaciecola nitratireducens 587 60 0 genus 10 226 19620 Alteromonas 1 species 0 Alteromonas naphthalenivorans 613 715451 1 2614992 3 1546 no rank 0 1917158 1 Alteromonas sp. RW2A1 530 species 0 0 species 462 Alteromonas sp. Mac1 1 1777491 2058133 1 Alteromonas sp. MB-3u-76 554 species 0 589873 1 Alteromonas australica 5951 species 0 1 287094 493 Alteromonas addita 0 species 28108 1 Alteromonas macleodii 8374 species 0 0 species 1 233316 617 Alteromonas stellipolaris species 0 314275 1 Alteromonas mediterranea 1966 0 genus 110 3762 1 Marinobacter 10 2742 0 species 295 Marinobacter salinus 1 1874317 0 species 1 2743 605 Marinobacter hydrocarbonoclasticus no rank 0 1199 83889 3 species 0 Marinobacter sp. LQ44 476 1749259 1 0 species 1 1671721 398 Marinobacter sp. CP1 species 0 Marinobacter sp. BSs20148 325 490759 1 0 species 1 1420917 530 Marinobacter salarius 373 Marinobacter adhaerens 1 1033846 0 species 321 Marinobacter similis 1 1420916 0 species species 0 Marinobacter psychrophilus 329 330734 1 2 genus 0 261825 2 1 Agarivorans 415 0 species 1 680279 413 Agarivorans gilvus 4 0 genus 2 1621534 872 1 Paraglaciecola 1 326544 868 Paraglaciecola psychrophila 0 species genus 0 1 1 Lacimicrobium 389 1751872 2 0 species 1 1526571 388 Lacimicrobium alkaliphilum 5 0 family 3 267892 281 1 Ferrimonadaceae 44011 2 Ferrimonas 1 276 1 genus 0 0 species 275 Ferrimonas balearica 1 44012 0 family 23 22061 Pseudoalteromonadaceae 1 25 267888 0 genus 282 22038 1 Pseudoalteromonas 24 53246 species 0 43662 1 Pseudoalteromonas piscicida 426 0 species 782 Pseudoalteromonas piratica 1 1348114 1 28107 522 Pseudoalteromonas espejiana 0 species 625 Pseudoalteromonas tetraodonis 1 43659 0 species 0 species 470 Pseudoalteromonas marina 1 267375 0 species 2319 Pseudoalteromonas atlantica 1 288 0 species 1 228 523 Pseudoalteromonas haloplanktis 0 species 633 Pseudoalteromonas arctica 1 394751 648 Pseudoalteromonas aliena 1 247523 0 species 0 no rank 3640 5 194690 species 0 1720343 1 Pseudoalteromonas sp. 1_2015MBL_MicDiv 719 676 Pseudoalteromonas sp. SM9913 1 234831 0 species 1 1514074 1028 Pseudoalteromonas sp. NC201 0 species 0 species 573 Pseudoalteromonas sp. 13-15 1 1761891 1 283699 644 Pseudoalteromonas sp. Bsw20308 0 species species 0 Pseudoalteromonas agarivorans 2252 176102 1 Pseudoalteromonas issachenkonii 578 152297 1 species 0 species 0 161398 1 Pseudoalteromonas phenolica 748 0 species 363 Pseudoalteromonas rubra 1 43658 Pseudoalteromonas spongiae 4707 298657 1 species 0 794 Pseudoalteromonas tunicata 1 314281 0 species 43657 1 Pseudoalteromonas luteoviolacea 622 species 0 0 species 601 Pseudoalteromonas nigrifaciens 1 28109 0 species 1 166935 503 Pseudoalteromonas translucida Moritellaceae 1 783 267891 2 family 0 4 genus 0 779 58050 1 species 0 Moritella viscosa 779 80854 1 267890 25 Shewanellaceae 1 8757 12 family 0 88 genus 0 22 24 Shewanella 1 8745 454 Shewanella sediminis 1 271097 0 species 0 species 401 Shewanella violacea 1 60217 species 0 Shewanella baltica 875 62322 1 Shewanella piezotolerans 484 404011 1 species 0 0 species 589 Shewanella japonica 1 93973 Shewanella marisflavi 227 260364 1 species 0 489 Shewanella halifaxensis 1 271098 0 species 225848 1 Shewanella psychrophila 483 species 0 1 60478 239 Shewanella amazonensis 0 species 0 species 1 24 416 Shewanella putrefaciens 1547 196818 6 no rank 0 species 0 60481 1 Shewanella sp. MR-7 221 species 0 351745 1 Shewanella sp. W3-18-1 303 0 species 1 2059264 302 Shewanella sp. Pdp11 0 species 238 Shewanella sp. ANA-3 1 94122 283 Shewanella sp. WE21 1 2029986 0 species Shewanella sp. MR-4 200 60480 1 species 0 species 0 Shewanella loihica 250 359303 1 325 Shewanella denitrificans 1 192073 0 species 70864 1 Shewanella pealeana 346 species 0 species 0 Shewanella frigidimarina 624 56812 1 0 species 1 60961 409 Shewanella woodyi species 0 Shewanella bicestrii 297 2018305 1 70863 1 Shewanella oneidensis 202 species 0 2 0 family 4 267894 1251 1 Psychromonadaceae 0 genus 3 1249 Psychromonas 1 3 67572 Psychromonas ingrahamii 740 357794 1 species 0 no rank 0 2614957 1 506 Psychromonas sp. CNPT3 506 314282 1 species 0 1 Idiomarinaceae 1128 267893 6 family 0 5 1123 1 Idiomarina 5 135575 0 genus 22 135577 1 Idiomarina loihiensis 259 species 0 524 2614829 2 no rank 0 1 2100422 220 Idiomarina sp. OT37-5b 0 species species 0 Idiomarina sp. X4 304 2055892 1 1 1096243 318 Idiomarina piscisalsi 0 species family 0 11 1 Colwelliaceae 5301 267889 8 0 genus 1 1518149 827 1763536 1 Thalassotalea crassostreae 827 species 0 genus 0 27 1 Colwellia 4463 28228 6 963 Colwellia psychrerythraea 1 28229 0 species 932 Colwellia beringensis 1 1967665 0 species no rank 0 2541 196834 3 1816218 1 Colwellia sp. PAMC 20917 916 species 0 0 species 704 Colwellia sp. MT41 1 58049 921 Colwellia sp. PAMC 21821 1 1816219 0 species 28 order 0 1706369 28 1 Cellvibrionales 9408 Spongiibacteraceae 1 2042 1706375 7 family 0 30 0 genus 4 623 Spongiibacter 1 2 630749 no rank 0 2631504 1 619 species 0 Spongiibacter sp. IMCC21906 619 1620392 1 Zhongshania 1 612 1434050 2 genus 0 6 Zhongshania aliphaticivorans 606 1470434 1 species 0 3 genus 0 1084558 2 Oceanicoccus 1 777 species 0 716816 1 Oceanicoccus sagamiensis 774 0 family 42 3894 1 Cellvibrionaceae 11 1706371 447467 2 1 Simiduia 518 3 genus 0 447471 1 Simiduia agarivorans 515 species 0 2425 2 1 Teredinibacter 526 6 genus 0 Teredinibacter turnerae 520 2426 1 species 0 1 Cellvibrio 1337 10 4 genus 0 20 species 0 155077 1 Cellvibrio japonicus 427 890 2 2624793 0 no rank Cellvibrio sp. PSBB023 477 1945512 1 species 0 species 0 1987723 1 Cellvibrio sp. PSBB006 413 601 316625 1 genus 0 species 0 Saccharophagus degradans 601 86304 1 genus 0 870 2036021 1 0 species 1 1737490 870 Agarilytica rhodophyticola 17 family 0 1706373 5 Microbulbiferaceae 1 1674 1 Microbulbifer 1657 48073 4 genus 0 35 574 Microbulbifer thermotolerans 1 252514 0 species 0 species 1 260552 480 Microbulbifer agarilyticus species 0 1769779 1 Microbulbifer aggregans 568 0 family 6 1770 1 Halieaceae 4 1706372 1764 Halioglobus 1 3 1217416 0 genus 33 species 0 930806 1 Halioglobus pacificus 892 1 930805 839 Halioglobus japonicus 0 species 0 order 37 7076 Aeromonadales 1 29 135624 28 84642 7039 Aeromonadaceae 1 51 0 family 0 genus 8 640 Oceanisphaera 1 3 225143 0 species 294 Oceanisphaera profunda 1 1416627 Oceanisphaera sp. AMac2203 338 1903694 1 species 0 238 1 Tolumonas 2 43947 0 genus 1 237 Tolumonas auensis 1 43948 0 species 4 0 genus 2 129577 337 1 Oceanimonas 333 2636315 1 no rank 0 0 species 333 Oceanimonas sp. GK1 1 511062 642 18 Aeromonas 1 5243 309 genus 0 645 1 Aeromonas salmonicida 435 species 0 0 species 218 Aeromonas dhakensis 1 196024 0 no rank 1554 8 257493 1636607 1 Aeromonas sp. ASNIH2 185 species 0 species 0 2033033 1 Aeromonas sp. CU5 197 227 Aeromonas sp. ASNIH5 1 1758179 0 species 0 species 1 1636608 159 Aeromonas sp. ASNIH3 species 0 1920107 1 Aeromonas sp. ASNIH7 154 0 species 1 1636606 190 Aeromonas sp. ASNIH1 0 species 1 2033032 188 Aeromonas sp. CA23 1636609 1 Aeromonas sp. ASNIH4 254 species 0 species 0 Aeromonas caviae 148 648 1 651 1 Aeromonas media 188 species 0 652 1 Aeromonas schubertii 236 species 0 1 644 1207 Aeromonas hydrophila 0 species 654 1 Aeromonas veronii 549 species 0 0 species 1 558964 214 Aeromonas aquatica species 0 Aeromonas rivipollensis 185 948519 1 1 Zobellella 530 347533 2 genus 0 14 516 Zobellella denitrificans 1 347534 0 species 1 Chromatiales 12021 135613 52 order 0 103 family 0 41 Chromatiaceae 1 5100 1046 18 0 genus 5 396 Thiocystis 1 2 13724 Thiocystis violascens 391 73141 1 species 0 7 genus 0 53392 2 1 Thiodictyon 1088 species 0 1166950 1 Candidatus Thiodictyon syntrophicum 1081 4 0 genus 2 156885 548 1 Thioflavicoccus 0 species 544 Thioflavicoccus mobilis 1 80679 0 no rank 438 1 82569 0 species 1 1978339 438 Chromatiaceae bacterium 2141T.STBD.0c.01a 1980513 2 1 Candidatus Nitrosoglobus 536 6 genus 0 530 Candidatus Nitrosoglobus terrae 1 1630141 0 species 85072 2 Allochromatium 1 389 5 genus 0 species 0 Allochromatium vinosum 384 1049 1 Marichromatium 1 600 85076 2 genus 0 14 species 0 Marichromatium purpuratum 586 37487 1 15 0 genus 4 1227 1064 1 Nitrosococcus species 0 133539 1 Nitrosococcus halophilus 262 species 0 Nitrosococcus watsonii 442 473531 1 0 species 345 Nitrosococcus oceani 1 1229 681 Granulosicoccaceae 1 3 449719 0 family 9 0 genus 9 672 1 Granulosicoccus 2 437504 Granulosicoccus antarcticus 663 437505 1 species 0 493 451214 2 no rank 0 1273155 2 1 Thiohalobacter 493 14 genus 0 0 species 1 585455 479 Thiohalobacter thiocyanaticus 1 Halothiobacillaceae 496 255526 4 family 0 2 3 109262 494 Halothiobacillus 1 17 0 genus 232 1 2636392 0 no rank 0 species 232 Halothiobacillus sp. LS2 1 1860122 species 0 927 1 Halothiobacillus neapolitanus 245 1738654 3 1 Woeseiaceae 514 5 family 0 Woeseia 1 509 1738655 2 genus 0 11 498 Woeseia oceani 1 1548547 0 species 0 family 65 4072 1 Ectothiorhodospiraceae 18 72276 11 0 genus 2 133193 409 1 Alkalilimnicola species 0 351052 1 Alkalilimnicola ehrlichii 398 0 genus 9 587 Spiribacter 1 3 1335745 1 1335757 347 Spiribacter curvatus 0 species 231 Spiribacter salinus 1 1335746 0 species Thioalkalivibrio 1 2010 106633 6 genus 0 70 397 Thioalkalivibrio nitratireducens 1 186931 0 species species 0 Thioalkalivibrio paradoxus 364 108010 1 1 1033854 508 Thioalkalivibrio sulfidiphilus 0 species 1 2621013 335 0 no rank 1 396595 335 Thioalkalivibrio sp. K90mix 0 species Thioalkalivibrio versutus 336 106634 1 species 0 Ectothiorhodospira 1 326 1051 2 genus 0 2 no rank 0 324 2684909 1 1 1442136 324 Ectothiorhodospira sp. BSL-9 0 species 1 Halorhodospira 365 85108 2 genus 0 1 0 species 364 Halorhodospira halophila 1 1053 2 genus 0 1765964 2 Acidihalobacter 1 310 Acidihalobacter prosperus 308 160660 1 species 0 0 family 5 562 Wenzhouxiangellaceae 1 3 1676141 1676142 2 Wenzhouxiangella 1 557 5 genus 0 species 0 1579979 1 Wenzhouxiangella marina 552 0 order 170 64337 Pseudomonadales 1 129 72274 family 0 257 1 Pseudomonadaceae 42866 135621 86 subfamily 0 1172 351 3 3 352 1172 1 Azotobacter 9 0 genus 727 Azotobacter chroococcum 1 353 0 species 0 species 1 354 436 Azotobacter vinelandii 80 286 40964 1 Pseudomonas 1329 0 genus 196821 30 8408 no rank 0 1659194 1 Pseudomonas sp. GR 6-02 259 species 0 0 species 1 2067572 290 Pseudomonas sp. NC02 species 0 Pseudomonas sp. XWY-1 209 2069256 1 361 Pseudomonas sp. LPH1 1 1898684 0 species 1500687 1 Pseudomonas sp. St29 254 species 0 species 0 1856685 1 Pseudomonas sp. TCU-HL1 357 species 0 Pseudomonas sp. CCOS 191 233 1649877 1 species 0 Pseudomonas sp. DR 5-09 283 1534110 1 species 0 Pseudomonas sp. StFLB209 310 1028989 1 species 0 1283291 1 Pseudomonas sp. URMO17WK12:I11 507 1 2083053 236 Pseudomonas sp. SWI44 0 species 0 species 233 Pseudomonas sp. LH1G9 1 2083055 1259844 1 Pseudomonas sp. FGI182 201 species 0 species 0 1415630 1 Pseudomonas sp. TKP 310 0 species 1 1827300 209 Pseudomonas sp. MYb193 species 0 1611770 1 Pseudomonas sp. MRSN12121 338 species 0 1636610 1 Pseudomonas sp. PONIH3 253 69328 1 Pseudomonas sp. VLB120 210 species 0 species 0 2049589 1 Pseudomonas sp. HLS-6 225 0 species 1 1207075 229 Pseudomonas sp. UW4 0 species 1 2083051 210 Pseudomonas sp. SWI6 0 species 413 Pseudomonas sp. CC6-YY-74 1 1930532 1 2083054 236 Pseudomonas sp. LG1D9 0 species 1 2018067 172 Pseudomonas sp. FDAARGOS_380 0 species species 0 1294143 1 Pseudomonas sp. ATCC 13867 381 Pseudomonas sp. JY-Q 214 1338689 1 species 0 species 0 1931241 1 Pseudomonas sp. S-6-2 418 0 species 1 1500686 301 Pseudomonas sp. Os17 1 1981174 316 Pseudomonas sp. M30-35 0 species species 0 Pseudomonas sp. SWI36 240 2083052 1 Pseudomonas rhizosphaerae 247 216142 1 species 0 186 Pseudomonas cerasi 1 1583341 0 species 312306 1 Pseudomonas entomophila 253 species 0 0 species 1 65741 394 Pseudomonas knackmussii 136846 2 2971 species group 0 2579 1 578833 0 species subgroup 2579 Pseudomonas stutzeri 1 316 0 species Pseudomonas balearica 392 74829 1 species 0 0 species 247 Pseudomonas cremoricolorata 1 157783 species 0 Pseudomonas koreensis 523 198620 1 species group 0 5792 136845 6 3244 Pseudomonas putida 1 303 0 species 1 47880 482 Pseudomonas fulva 0 species species 0 Pseudomonas plecoglossicida 261 70775 1 1 76759 763 Pseudomonas monteilii 0 species 1 47885 347 Pseudomonas oryzihabitans 0 species 0 species 1 78327 695 Pseudomonas mosselii species group 0 136843 9 5708 0 species 201 Pseudomonas veronii 1 76761 0 species 3473 Pseudomonas fluorescens 1 294 0 species 1 47878 506 Pseudomonas azotoformans species 0 380021 1 Pseudomonas protegens 318 Pseudomonas orientalis 240 76758 1 species 0 Pseudomonas corrugata 212 47879 1 species 0 Pseudomonas mandelii 246 75612 1 species 0 Pseudomonas trivialis 264 200450 1 species 0 248 Pseudomonas poae 1 200451 0 species Pseudomonas alcaliphila 356 101564 1 species 0 1944 2 136842 0 species group species 0 Pseudomonas chlororaphis 1534 587753 1 1 296 410 Pseudomonas fragi 0 species 0 species 200 Pseudomonas antarctica 1 219572 157782 1 Pseudomonas parafulva 449 species 0 237609 1 Pseudomonas alkylphenolica 255 species 0 Pseudomonas frederiksbergensis 591 104087 1 species 0 504 Pseudomonas brassicacearum 1 930166 0 species species group 0 136841 6 5790 0 species 494 Pseudomonas resinovorans 1 53412 1 1232139 517 0 species subgroup Pseudomonas furukawaii 517 1149133 1 species 0 43263 1 Pseudomonas alcaligenes 395 species 0 53408 1 Pseudomonas citronellolis 777 species 0 0 species 1 300 1391 Pseudomonas mendocina Pseudomonas aeruginosa 2216 287 1 species 0 species 0 Pseudomonas psychrotolerans 368 237610 1 0 species 191 Pseudomonas lurida 1 244566 0 species group 3671 8 136849 251698 2 720 species subgroup 0 369 Pseudomonas savastanoi 1 29438 0 species species 0 Pseudomonas amygdali 351 47877 1 251695 1 1615 species subgroup 0 0 species 1615 Pseudomonas syringae 1 317 224 Pseudomonas cichorii 1 36746 0 species 172 2775504 1 no rank 0 species 0 1206777 1 Pseudomonas sp. Lz4W 172 0 species 1 46257 237 Pseudomonas avellanae 0 species 1 251701 474 Pseudomonas syringae group genomosp. 3 33069 1 Pseudomonas viridiflava 229 species 0 species 0 1788301 1 Pseudomonas versuta 210 0 species 1 1853130 377 Pseudomonas silesiensis 1849530 2 1 Oblitimonas 473 1 genus 0 species 0 1697053 1 Oblitimonas alkaliphila 472 family 0 58 1 Moraxellaceae 21301 468 42 genus 0 78 Psychrobacter 1 3766 497 11 species 0 334543 1 Psychrobacter arcticus 320 2245 196806 6 no rank 0 Psychrobacter sp. PRwf-1 361 349106 1 species 0 0 species 352 Psychrobacter sp. P11G5 1 1699624 1720344 1 Psychrobacter sp. AntiMn-1 413 species 0 0 species 1 1699622 398 Psychrobacter sp. P2G3 species 0 Psychrobacter sp. G 336 571800 1 1 1028416 385 Psychrobacter sp. DAB_AL43B 0 species species 0 Psychrobacter cryohalolentis 369 330922 1 0 species 1 261164 379 Psychrobacter alimentarius species 0 Psychrobacter urativorans 375 45610 1 0 genus 24 1810 Moraxella 1 5 475 1 29433 215 Moraxella ovis 0 species 0 species 713 Moraxella osloensis 1 34062 species 0 Moraxella bovoculi 397 386891 1 Moraxella catarrhalis 461 480 1 species 0 0 genus 221 15667 Acinetobacter 1 25 469 0 species 433 Acinetobacter larvae 1 1789224 0 species group 6280 5 909768 106654 1 Acinetobacter nosocomialis 692 species 0 0 species 1012 Acinetobacter calcoaceticus 1 471 0 species 1 470 2151 Acinetobacter baumannii Acinetobacter lactucae 535 1785128 1 species 0 0 species 1 48296 1890 Acinetobacter pittii species 0 Acinetobacter soli 362 487316 1 7 196816 2899 0 no rank 0 species 1 1608473 366 Acinetobacter sp. NCu2D-2 1758189 1 Acinetobacter sp. ACNIH2 472 species 0 species 0 1636603 1 Acinetobacter sp. ACNIH1 377 species 0 1646498 1 Acinetobacter sp. TTH0-4 452 1 1407071 438 Acinetobacter sp. TGL-Y2 0 species 2079596 1 Acinetobacter sp. SWBY1 429 species 0 0 species 365 Acinetobacter sp. LoGeW2-3 1 1808001 345 Acinetobacter schindleri 1 108981 0 species 0 species 772 Acinetobacter junii 1 40215 1 756892 295 Acinetobacter indicus 0 species species 0 Acinetobacter haemolyticus 640 29430 1 0 species 1 1324350 881 Acinetobacter equi 426 Acinetobacter johnsonii 1 40214 0 species 0 species 654 Acinetobacter bereziniae 1 106648 Acinetobacter oleivorans 566 1148157 1 species 0 1 40216 424 Acinetobacter radioresistens 0 species 0 species 469 1 202950 strain 0 62977 1 Acinetobacter sp. ADP1 469 order 0 236 Enterobacterales 1 75851 91347 247 17 0 family 20 1903410 4013 Pectobacteriaceae 1 6 genus 0 71655 2 Brenneria 1 211 205 Brenneria goodwinii 1 1109412 0 species 1293 Dickeya 1 6 204037 0 genus 34 0 species 346 Dickeya zeae 1 204042 Dickeya fangzhongdai 182 1778540 1 species 0 0 species 200 Dickeya dadantii 1 204038 species 0 Dickeya dianthicola 181 204039 1 species 0 Dickeya solani 350 1089444 1 122277 6 Pectobacterium 1 1584 40 genus 0 0 species 1 55208 185 Pectobacterium wasabiae species 0 1905730 1 Pectobacterium parmentieri 279 249 Pectobacterium polaris 1 2042057 0 species 630 Pectobacterium carotovorum 1 554 0 species 29471 1 Pectobacterium atrosepticum 201 species 0 genus 0 40 1 Sodalis 908 84565 5 0 species 152 Sodalis glossinidius 1 63612 1 1239307 225 Sodalis praecaptivus 0 species species 0 1929246 1 Sodalis endosymbiont of Henestaris halophilus 248 Candidatus Sodalis pierantonius 243 1486991 1 species 0 1 Yersiniaceae 10878 1903411 39 family 0 45 0 genus 1 1565532 6 Rouxiella 5142 Serratia 1 16 613 0 genus 173 species 0 61652 1 Serratia rubidaea 270 0 no rank 8 2647522 1848 0 species 194 Serratia sp. AS13 1 768493 0 species 235 Serratia sp. FGI94 1 671990 0 species 1 1327989 250 Serratia sp. FS14 1 104623 220 Serratia sp. ATCC 39006 0 species 0 species 1 1758196 207 Serratia sp. SSNIH1 0 species 1 488142 329 Serratia sp. SCBI 195 Serratia sp. AS12 1 768490 0 species 0 species 218 Serratia sp. MYb239 1 2033438 0 species 428 Serratia fonticola 1 47917 1 28151 125 Serratia proteamaculans 0 species species 0 82996 1 Serratia plymuthica 415 species 0 Serratia liquefaciens 237 614 1 1 615 1381 Serratia marcescens 0 species 61651 1 Serratia ficaria 265 species 0 574 Rahnella 1 4 34037 0 genus 21 no rank 0 2635087 2 387 species 0 Rahnella sp. Y9602 171 741091 1 216 Rouxiella sp. ERMR1:05 1 1805933 0 species 0 species 1 34038 166 Rahnella aquatilis 0 genus 88 4647 1 Yersinia 13 629 0 species 1 263819 177 Yersinia aleksiciae 273 Yersinia ruckeri 1 29486 0 species species group 0 1384 1649845 3 534 Yersinia pseudotuberculosis 1 633 0 species species 0 367190 1 Yersinia similis 413 Yersinia pestis 437 632 1 species 0 2653513 1 191 no rank 0 191 Yersinia sp. FDAARGOS_228 1 1839800 0 species Yersinia intermedia 207 631 1 species 0 species 0 Yersinia kristensenii 246 28152 1 235 Yersinia aldovae 1 29483 0 species 0 species 871 Yersinia enterocolitica 1 630 species 0 Yersinia frederiksenii 705 29484 1 270 Yersinia rohdei 1 29485 0 species 2 1745211 193 1 Chania 2 0 genus Chania multitudinisentens 191 1639108 1 species 0 Gibbsiella 1 271 929812 2 genus 0 1 species 0 929813 1 Gibbsiella quercinecans 270 Budviciaceae 1 235 1903416 3 family 0 12 2 genus 0 82984 2 1 Pragia 223 1 82985 221 Pragia fontium 0 species family 0 21 1 Morganellaceae 6977 1903414 22 1 genus 0 581 2 1 Morganella 324 582 1 Morganella morganii 323 species 0 0 genus 5 1607 Proteus 1 3 583 0 species 1 584 947 Proteus mirabilis species 0 585 1 Proteus vulgaris 655 0 genus 12 1170 1 Photorhabdus 4 29487 0 species 1 291112 453 Photorhabdus asymbiotica 1 574560 322 Photorhabdus temperata 0 species 0 species 383 Photorhabdus luminescens 1 29488 637 2 1 Arsenophonus 883 5 genus 0 0 species 878 Arsenophonus symbiont of Lipoptena fortisetosa 1 634113 genus 0 3 1 Providencia 1396 586 4 species 0 126385 1 Providencia alcalifaciens 352 0 species 582 Providencia stuartii 1 588 587 1 Providencia rettgeri 459 species 0 16 0 genus 6 626 1576 1 Xenorhabdus species 0 351671 1 Xenorhabdus doucetiae 252 Xenorhabdus bovienii 409 40576 1 species 0 species 0 Xenorhabdus hominickii 344 351679 1 species 0 628 1 Xenorhabdus nematophila 284 0 species 1 40577 271 Xenorhabdus poinarii 0 family 30 16160 1 Erwiniaceae 28 1903409 53335 11 1 Pantoea 2848 68 genus 0 2630326 3 619 no rank 0 226 Pantoea sp. PSNIH2 1 1484157 0 species Pantoea sp. At-9b 211 592316 1 species 0 1 1484158 182 Pantoea sp. PSNIH1 0 species 1076550 1 Pantoea rwandensis 176 species 0 0 species 1 1235990 577 Candidatus Pantoea carbekii species 0 1891675 1 Pantoea alhagi 174 349 1 1654067 0 species group 349 Pantoea agglomerans 1 549 0 species 0 species 1 470934 392 Pantoea vagans 0 species 197 Pantoea stewartii 1 66269 0 species 1 553 296 Pantoea ananatis genus 0 22 1 Wigglesworthia 1904 51228 2 1 51229 1882 Wigglesworthia glossinidia 0 species 0 genus 2 247 1 Tatumella 2 82986 0 species 245 Tatumella citrea 1 53336 genus 0 475 2100764 2 207 Pantoea gaviniae 1 665914 0 species 1 665913 268 Pantoea calida 0 species 9242 1 Buchnera 2 32199 0 genus 13 0 species 9229 Buchnera aphidicola 1 9 0 genus 19 1414 Erwinia 1 8 551 127 1 2622719 0 no rank 215689 1 Erwinia sp. Ejp617 127 species 0 species 0 1619313 1 Erwinia gerundensis 195 Erwinia pyrifoliae 144 79967 1 species 0 0 species 1 182337 248 Erwinia billingiae 1922217 1 Candidatus Erwinia sp. ErCipseudotaxifoliae 318 species 0 species 0 552 1 Erwinia amylovora 191 172 Erwinia tasmaniensis 1 338565 0 species 333 2 451511 0 no rank 1 Plesiomonas 333 702 2 genus 0 1 0 species 1 703 332 Plesiomonas shigelloides 4534 Hafniaceae 1 14 1903412 0 family 5 68 genus 0 635 8 1 Edwardsiella 3659 0 no rank 440 2 2676541 0 species 220 Edwardsiella sp. EA181011 1 1578828 1650654 1 Edwardsiella sp. LADL05-105 220 species 0 species 0 67780 1 Edwardsiella ictaluri 165 1 636 2412 Edwardsiella tarda 0 species species 0 Edwardsiella piscicida 200 1263550 1 1 1821960 227 Edwardsiella anguillarum 0 species 93378 1 Edwardsiella hoshinae 147 species 0 genus 0 4 1 Obesumbacterium 182 82982 2 1 82983 178 Obesumbacterium proteus 0 species genus 0 12 1 Hafnia 688 568 3 0 species 509 Hafnia alvei 1 569 167 2621980 1 no rank 0 species 0 Hafnia sp. CBA7124 167 1848580 1 Enterobacteriaceae 1 32485 543 118 family 0 246 genus 0 7 Lelliottia 1 629 1330545 4 Lelliottia jeotgali 163 1907578 1 species 0 147 Lelliottia nimipressuralis 1 69220 0 species 61646 1 Lelliottia amnigena 312 species 0 190 579 1 genus 0 0 species 1 61648 190 Kluyvera intermedia no rank 0 1007 36866 5 species 0 2066051 1 Enterobacteriaceae bacterium ENNIH1 155 206 Enterobacteriaceae bacterium ENNIH2 1 1920109 0 species 1 1920128 151 Enterobacteriaceae bacterium ENNIH3 0 species species 0 891974 1 Plautia stali symbiont 348 147 Enterobacteriaceae bacterium strain FGI 57 1 693444 0 species 6445 191675 18 no rank 0 0 clade 18 84563 6445 genus 0 1906660 1 451 0 species 1 1778264 451 Candidatus Mikella endobia 1906659 1 139 genus 0 139 Candidatus Hoaglandella endobia 1 1778263 0 species 0 clade 4 146507 854 568987 2 1 Candidatus Hamiltonella 350 5 genus 0 1 138072 345 Candidatus Hamiltonella defensa 0 species 1199245 1 secondary endosymbiont of Ctenarytaina eucalypti 137 species 0 367 secondary endosymbiont of Heteropsylla cubana 1 134287 0 species 1 199891 375 0 clade 1 1835721 375 secondary endosymbiont of Trabutina mannipara 0 species 1906657 1 124 genus 0 1 1778262 124 Candidatus Doolittlea endobia 0 species genus 0 1906661 1 317 0 species 1 1070130 317 Candidatus Gullanella endobia 2 1682492 1010 1 Candidatus Tachikawaea 2 0 genus species 0 Candidatus Tachikawaea gelatinosa 1008 1410383 1 3175 7 84564 0 clade 3175 1 Candidatus Blochmannia 7 203804 0 genus 30 no rank 0 1053 711328 2 1505596 1 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 484 species 0 0 species 1 1505597 569 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 species 1 101534 386 Candidatus Blochmannia pennsylvanicus 0 species 1 203907 609 Candidatus Blochmannia floridanus 0 species 1 251535 662 Candidatus Blochmannia vafer 251542 1 Candidatus Blochmannia chromaiodes 435 species 0 0 genus 10 621 Raoultella 1 3 160674 54291 1 Raoultella ornithinolytica 425 species 0 species 0 Raoultella planticola 186 575 1 791 1 Kosakonia 5 1330547 0 genus 19 1 208223 175 Kosakonia cowanii 0 species 0 species 1 497725 171 Kosakonia oryzae 1 1158459 199 Kosakonia sacchari 0 species 0 species 1 283686 227 Kosakonia radicincitans genus 0 39 Cronobacter 1 1332 413496 8 535744 1 Cronobacter universalis 154 species 0 Cronobacter dublinensis 192 413497 1 species 0 Cronobacter malonaticus 156 413503 1 species 0 0 species 1 413501 184 Cronobacter muytjensii Cronobacter condimenti 157 1163710 1 species 0 species 0 413502 1 Cronobacter turicensis 145 0 species 1 28141 305 Cronobacter sakazakii 83654 4 1 Leclercia 528 15 genus 0 2627398 2 337 no rank 0 0 species 176 Leclercia sp. LSNIH1 1 1920114 0 species 161 Leclercia sp. LSNIH3 1 1920116 83655 1 Leclercia adecarboxylata 176 species 0 2503 Salmonella 1 3 590 0 genus 3 1 54736 238 Salmonella bongori 0 species Salmonella enterica 2262 28901 1 species 0 genus 0 124 1048757 1 Candidatus Moranella endobia 124 1048758 1 species 0 1 0 genus 2 1335483 132 1 Shimwellia 131 Shimwellia blattae 1 563 0 species 0 genus 2 533 Pluralibacter 1 3 1330546 0 species 326 Pluralibacter gergoviae 1 61647 205 [Enterobacter] lignolyticus 1 1334193 0 species 1 Klebsiella 4686 570 10 genus 0 109 0 species 221 Klebsiella quasipneumoniae 1 1463165 0 species 1664 Klebsiella pneumoniae 1 573 439 Klebsiella michiganensis 1 1134687 0 species 0 species 170 Klebsiella quasivariicola 1 2026240 1 571 727 Klebsiella oxytoca 0 species 1 244366 368 Klebsiella variicola 0 species 0 species 636 Klebsiella aerogenes 1 548 2 2608929 352 0 no rank 1905288 1 Klebsiella sp. LTGPAF-6F 183 species 0 1 1934254 169 Klebsiella sp. M5al 0 species 401618 1 551 genus 0 401619 1 Candidatus Riesia pediculicola 551 species 0 3431 Escherichia 1 5 561 0 genus 17 species 0 Escherichia coli 2831 562 1 564 1 Escherichia fergusonii 133 species 0 1499973 1 Escherichia marmotae 127 species 0 1 208962 323 Escherichia albertii 0 species 1 Candidatus Ishikawaella 761 409304 2 genus 0 7 species 0 168169 1 Candidatus Ishikawaella capsulata 754 3203 Citrobacter 1 14 544 0 genus 85 0 no rank 284 2 2644389 species 0 Citrobacter sp. CFNIH10 164 1920110 1 0 species 1 1702170 120 Citrobacter sp. FDAARGOS_156 7 1344959 1730 0 species group species 0 2077148 1 Citrobacter freundii complex sp. CFNIH4 153 Citrobacter freundii complex sp. CFNIH3 124 2077147 1 species 0 119 Citrobacter freundii complex sp. CFNIH2 1 2066049 0 species 0 species 1 2077149 115 Citrobacter freundii complex sp. CFNIH9 species 0 67827 1 Citrobacter werkmanii 237 0 species 740 Citrobacter freundii 1 546 species 0 Citrobacter braakii 242 57706 1 0 species 435 Citrobacter amalonaticus 1 35703 species 0 545 1 Citrobacter koseri 213 species 0 67824 1 Citrobacter farmeri 283 1 67825 173 Citrobacter rodentium 0 species genus 0 1 1 Cedecea 545 158483 2 1 158822 544 Cedecea neteri 0 species 0 genus 188 3977 1 Enterobacter 22 547 no rank 0 2608935 9 956 Enterobacter sp. 638 125 399742 1 species 0 0 species 1 1868135 79 Enterobacter sp. HK169 1692238 1 Enterobacter sp. FY-07 129 species 0 0 species 1 1914861 184 Enterobacter sp. SA187 97 Enterobacter sp. CRENT-193 1 2051905 0 species 1560339 1 Enterobacter sp. E20 65 species 0 1827481 1 Enterobacter sp. ODB01 80 species 0 species 0 Enterobacter sp. Crenshaw 72 1977566 1 0 species 125 Enterobacter sp. R4-368 1 1166130 species group 0 354276 12 2833 286 2757714 3 no rank 0 species 0 2077137 1 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 111 Enterobacter cloacae complex sp. ECNIH7 96 1915310 1 species 0 species 0 2027919 1 Enterobacter cloacae complex bacterium 79 75 Enterobacter kobei 1 208224 0 species 0 species 361 Enterobacter asburiae 1 61645 Enterobacter cloacae 1164 550 1 species 0 Enterobacter ludwigii 100 299767 1 species 0 69218 1 Enterobacter cancerogenus 153 species 0 Enterobacter cloacae complex 'Hoffmann cluster IV' 96 1812935 1 species 0 412 species 0 158836 3 Enterobacter hormaechei 1 598 93 Enterobacter cloacae complex 'Hoffmann cluster III' 1 1812934 0 subspecies 93 Enterobacter xiangfangensis 1 1296536 0 subspecies 620 4 1 Shigella 250 13 genus 0 0 no rank 73 1 2629414 1813821 1 Shigella sp. PAMC 28760 73 species 0 0 species 121 Shigella dysenteriae 1 622 623 1 Shigella flexneri 43 species 0 118969 21 Legionellales 1 13084 19 order 0 0 family 33 1722 Coxiellaceae 1 5 118968 1 134284 595 0 no rank 0 species 1 1592897 595 Coxiella-like endosymbiont 776 3 1 Coxiella 1094 11 genus 0 species 0 777 1 Coxiella burnetii 524 0 no rank 1 2676648 559 0 species 1 325775 559 Coxiella endosymbiont of Amblyomma americanum 444 15 1 Legionellaceae 11343 16 family 0 465 2 Tatlockia 1 617 4 genus 0 1 451 613 Tatlockia micdadei 0 species 1 Legionella 10710 445 12 genus 0 125 0 species 931 Legionella fallonii 1 96230 Legionella endosymbiont of Polyplax serrata 1147 2005262 1 species 0 1 66969 769 Legionella waltersii 0 species Legionella spiritensis 321 452 1 species 0 Legionella clemsonensis 673 1867846 1 species 0 0 species 1 29423 557 Legionella oakridgensis species 0 Legionella pneumophila 2840 446 1 species 0 28087 1 Legionella sainthelensi 1009 537 Legionella lansingensis 1 45067 0 species 0 species 776 Legionella hackeliae 1 449 1025 Legionella longbeachae 1 450 0 species 7149 118884 13 no rank 0 2 1608298 285 Thiolapillus 1 3 0 genus species 0 1076588 1 Thiolapillus brandeum 282 7 genus 0 349742 2 1 Sedimenticola 542 Sedimenticola thiotaurini 535 1543721 1 species 0 clade 0 2461 32036 4 13 genus 0 1541743 2 1 Candidatus Ruthia 756 386487 1 Candidatus Ruthia magnifica 743 species 0 species 0 Calyptogena okutanii thioautotrophic gill symbiont 1006 410330 1 species 0 113267 1 Bathymodiolus septemdierum thioautotrophic gill symbiont 699 1524249 1 476 genus 0 476 Pseudohongiella spirulinae 1 1249552 0 species 3 655184 2180 Candidatus Thioglobus 1 45 0 genus Candidatus Thioglobus autotrophicus 669 1705394 1 species 0 1 1427364 1466 Candidatus Thioglobus singularis 0 species 1 198346 1205 0 clade 1205 Candidatus Baumannia cicadellinicola 1 186490 0 species 0 order 140 21293 Xanthomonadales 1 53 135614 1 Xanthomonadaceae 18121 32033 38 family 0 176 1 2370 765 0 genus 765 Xylella fastidiosa 1 2371 0 species 83614 2 1 Luteimonas 328 6 genus 0 0 species 1 2006110 322 Luteimonas sp. 100111 1092 Pseudoxanthomonas 1 3 83618 0 genus 15 species 0 Pseudoxanthomonas suwonensis 766 314722 1 1 415229 311 Pseudoxanthomonas spadix 0 species genus 0 31 1 Lysobacter 2987 68 5 582 Lysobacter enzymogenes 1 69 0 species 0 species 1 262324 550 Lysobacter gummosus 923 Lysobacter capsici 1 435897 0 species Lysobacter antibioticus 901 84531 1 species 0 100 0 genus 9 40323 4981 1 Stenotrophomonas species group 0 2260 995085 1 species 0 40324 1 Stenotrophomonas maltophilia 2260 species 0 Stenotrophomonas nitritireducens 282 83617 1 4 196198 1334 0 no rank 1793721 1 Stenotrophomonas sp. KCTC 12332 304 species 0 species 0 Stenotrophomonas sp. LM091 278 1904944 1 337 Stenotrophomonas sp. WZN-1 1 2005046 0 species species 0 1827305 1 Stenotrophomonas sp. MYb57 415 species 0 216778 1 Stenotrophomonas rhizophila 318 0 species 687 Stenotrophomonas acidaminiphila 1 128780 7792 Xanthomonas 1 17 338 0 genus 288 1 442694 241 Xanthomonas perforans 0 species 56459 1 Xanthomonas vasicola 188 species 0 species 0 Xanthomonas vesicatoria 377 56460 1 1 29447 224 Xanthomonas albilineans 0 species 0 species 1 343 660 Xanthomonas translucens species 0 Xanthomonas euvesicatoria 257 456327 1 643453 2 1585 species group 0 0 species 1256 Xanthomonas citri 1 346 species 0 Xanthomonas fuscans 329 366648 1 1185 Xanthomonas campestris 1 339 0 species Xanthomonas phaseoli 224 1985254 1 species 0 0 species 379 Xanthomonas sacchari 1 56458 0 species 1 347 1061 Xanthomonas oryzae species 0 Xanthomonas alfalfae 208 366650 1 0 species 216 Xanthomonas axonopodis 1 53413 48664 1 Xanthomonas fragariae 409 species 0 Xanthomonas hortorum 290 56454 1 species 0 44 0 family 14 1775411 3032 1 Rhodanobacteraceae 0 genus 7 601 1 Dokdonella 2 323413 Dokdonella koreensis 594 323415 1 species 0 5 genus 0 242605 2 Luteibacter 1 312 242606 1 Luteibacter rhizovicinus 307 species 0 1 Rhodanobacter 469 75309 2 genus 0 11 species 0 Rhodanobacter denitrificans 458 666685 1 5 genus 0 70411 2 1 Frateuria 317 0 species 1 81475 312 Frateuria aurantia 231454 4 Dyella 1 1066 18 genus 0 species 0 Dyella thiooxydans 417 445710 1 298 Dyella japonica 1 231455 0 species 0 species 333 Dyella jiangningensis 1 1379159 0 genus 223 1 2233801 0 species 1 2021234 223 Xanthomonadales bacterium D13 1 Thiotrichales 25168 72273 35 order 0 18 6949 1 Piscirickettsiaceae 14 135616 0 family 20 16 genus 0 40222 3 1 Methylophaga 991 0 species 1 754477 411 Methylophaga frappieri Methylophaga nitratireducenticrescens 564 754476 1 species 0 1 Cycloclasticus 4080 34067 4 genus 0 44 no rank 0 2621467 2 3015 385025 1 Cycloclasticus sp. P1 1429 species 0 0 species 1 728003 1586 Cycloclasticus sp. PY97N 0 species 1021 Cycloclasticus zancles 1 1329899 0 genus 1 28884 383 1 39765 383 Hydrogenovibrio crunogenus 0 species 0 genus 3 659 1 Thiomicrospira 3 933 0 species 1 92245 342 Thiomicrospira aerophila species 0 147268 1 Thiomicrospira cyclica 314 816 Piscirickettsia 1 2 1237 0 genus 7 809 Piscirickettsia salmonis 1 1238 0 species family 0 27 1 Francisellaceae 16579 34064 15 Francisella 1 15570 262 12 genus 0 185 1 549298 1782 Francisella halioticida 0 species species 0 954 1 Francisella persica 714 573570 1 Francisella sp. TX077310 1397 species 0 species 0 Francisella sp. CA97-1460 1279 1542390 1 0 species 2366 Francisella philomiragia 1 28110 species 0 Francisella tularensis 2631 263 1 0 species 1 657445 1556 Francisella noatunensis 622488 1 Francisella hispaniensis 860 species 0 0 species 950 Francisella sp. TX077308 1 573569 2610885 2 1850 no rank 0 789 Francisella sp. MA067296 1 475375 0 species 0 species 1 1547445 1061 Francisella sp. FSC1006 2 1869285 982 1 Allofrancisella 2 0 genus species 0 Allofrancisella guangzhouensis 980 594679 1 5 135617 1622 1 Thiotrichaceae 13 0 family 40751 2 Thioploca 1 761 6 genus 0 0 species 755 Thioploca ingrica 1 40754 1021 2 Beggiatoa 1 848 4 genus 0 0 species 844 Beggiatoa leptomitoformis 1 288004 775 33811 2 no rank 0 1 83406 426 gamma proteobacterium HdN1 0 species endosymbiont of unidentified scaly snail isolate Monju 349 1248727 1 species 0 6 1240482 2003 1 Orbales 2 0 order family 0 13 1 Orbaceae 2001 1240483 5 1335631 2 1 Frischella 887 3 genus 0 1267021 1 Frischella perrara 884 species 0 2 1193503 1101 Gilliamella 1 6 0 genus 1095 Gilliamella apicola 1 1196095 0 species 579 1 Immundisolibacterales 4 1934945 0 order 2 1 Immundisolibacteraceae 577 1934946 3 family 0 10 0 genus 12 567 1 Immundisolibacter 2 1934947 0 species 555 Immundisolibacter cernigliae 1 1810504 1 Oceanospirillales 27858 135619 72 order 0 71 Halomonadaceae 1 9936 28256 32 family 0 90 404432 2 1 Salinicola 539 19 genus 0 0 species 520 Salinicola tamaricis 1 1771309 0 genus 127 5876 Halomonas 1 15 2745 0 species 499 Halomonas aestuarii 1 1897729 475662 1 Halomonas beimenensis 609 species 0 no rank 0 3039 2609666 8 1118153 1 Halomonas sp. GFAJ-1 342 species 0 1949203 1 Halomonas sp. 'Soap Lake #6' 323 species 0 1 1971364 343 Halomonas sp. GT 0 species 0 species 1 1962264 323 Halomonas sp. 'Soap Lake #7' 0 species 1 1504981 413 Halomonas sp. KO116 490 Halomonas sp. SF2003 1 2136172 0 species 1610576 1 Halomonas sp. R57-5 351 species 0 1 1883416 454 Halomonas sp. 1513 0 species 1 115561 502 Halomonas hydrothermalis 0 species 1 213554 328 Halomonas campaniensis 0 species species 0 1178482 1 Halomonas huangheensis 382 0 species 390 Halomonas chromatireducens 1 507626 genus 0 8 Chromohalobacter 1 391 42054 2 0 species 1 158080 383 Chromohalobacter salexigens no rank 0 1415 114403 5 genus 0 530 235572 1 Candidatus Portiera aleyrodidarum 530 91844 1 species 0 0 genus 2 321 1 Candidatus Carsonella 2 114185 319 Candidatus Carsonella ruddii 1 114186 0 species genus 0 1 Candidatus Evansia 1 564 1495768 2 1495769 1 Candidatus Evansia muelleri 563 species 0 1 Kushneria 706 504090 3 genus 0 8 Kushneria konosiri 359 698828 1 species 0 species 0 157779 1 Kushneria marisflavi 339 2 204286 499 Cobetia 1 1 0 genus Cobetia marina 498 28258 1 species 0 376488 2 Halotalea 1 420 4 genus 0 0 species 1 376489 416 Halotalea alkalilenta 9484 1 Alcanivoracaceae 9 224372 0 family 11 2025617 2 Ketobacter 1 609 8 genus 0 species 0 Ketobacter alkanivorans 601 1917421 1 6 59753 8864 Alcanivorax 1 87 0 genus 0 species 766 Alcanivorax dieselolei 1 285091 0 species 3368 Alcanivorax borkumensis 1 59754 0 no rank 1 2638842 3223 1113728 1 Alcanivorax sp. NBRC 101098 3223 species 0 species 0 1306787 1 Alcanivorax pacificus 662 758 Alcanivorax xenomutans 1 1094342 0 species family 0 13 Kangiellaceae 1 2205 1920240 6 5 261963 2192 Kangiella 1 39 0 genus 1144748 1 Kangiella sediminilitoris 402 species 0 914150 1 Kangiella geojedonensis 771 species 0 1 1561924 495 Kangiella profundi 0 species 1 261964 485 Kangiella koreensis 0 species 529 1 Hahellaceae 3 224379 0 family 4 0 genus 8 525 Hahella 1 2 158481 517 Hahella chejuensis 1 158327 0 species 0 family 8 521 Oleiphilaceae 1 3 191033 2 genus 0 141450 2 Oleiphilus 1 513 141451 1 Oleiphilus messinensis 511 species 0 135620 13 1 Oceanospirillaceae 4152 20 family 0 Thalassolituus 1 807 187492 2 genus 0 5 802 Thalassolituus oleivorans 1 187493 0 species 1 Oleispira 590 188907 2 genus 0 1 589 Oleispira antarctica 1 188908 0 species 7 0 genus 2 1537406 489 1 Bacterioplanes species 0 1249553 1 Bacterioplanes sanyensis 482 genus 0 3 1 Marinomonas 1731 28253 4 no rank 0 790 196814 1 1 400668 790 Marinomonas sp. MWYL1 0 species 460 Marinomonas mediterranea 1 119864 0 species 478 Marinomonas posidonica 1 936476 0 species 515 Marinobacterium 1 2 48075 0 genus 1 0 species 1 1821621 514 Marinobacterium aestuarii 4 0 family 5 255527 960 1 Saccharospirillaceae 1 0 genus 2 230494 402 1 Reinekea 1336806 1 Reinekea forsetii 401 species 0 5 genus 0 1445504 2 1 Gynuella 554 1 1445505 549 Gynuella sunshinyii 0 species order 0 17 1 Methylococcales 2591 135618 12 13 family 0 403 11 Methylococcaceae 1 2574 266 1 762296 0 genus species 0 1704499 1 Methylovulum psychrotolerans 266 2 413 255 1 Methylococcus 6 0 genus 0 species 1 414 249 Methylococcus capsulatus genus 0 3 1 Methylomicrobium 472 39773 2 271065 1 Methylomicrobium alcaliphilum 469 species 0 5 416 1568 1 Methylomonas 49 0 genus Methylomonas denitrificans 504 1538553 1 species 0 no rank 0 353 2608980 1 species 0 Methylomonas sp. DH-1 353 1727196 1 Methylomonas koyamae 350 702114 1 species 0 0 species 1 421 312 Methylomonas methanica 4 0 order 6 1692040 1004 1 Acidiferrobacterales family 0 14 Acidiferrobacteraceae 1 1000 1692041 5 1 Sulfuricaulis 426 1744881 2 genus 0 6 1 1620215 420 Sulfuricaulis limicola 0 species 560 1 Sulfurifustis 2 1692042 0 genus 11 0 species 1 1675686 549 Sulfurifustis variabilis 10493 Pasteurellales 1 32 135625 0 order 13 31 712 10480 1 Pasteurellaceae 74 0 family 2 155493 356 Gallibacterium 1 1 0 genus 1 750 355 Gallibacterium anatis 0 species 2 0 genus 3 416916 626 Aggregatibacter 1 Aggregatibacter aphrophilus 314 732 1 species 0 species 0 Aggregatibacter actinomycetemcomitans 310 714 1 genus 0 7 1 Haemophilus 3168 724 6 1579 Haemophilus influenzae 1 727 0 species 0 species 366 Haemophilus parainfluenzae 1 729 no rank 0 322 2609962 1 species 0 712310 1 Haemophilus sp. oral taxon 036 322 1 249188 271 Haemophilus pittmaniae 0 species 0 species 623 [Haemophilus] ducreyi 1 730 5 713 1180 Actinobacillus 1 6 0 genus 718 1 Actinobacillus equuli 271 species 0 Actinobacillus suis 317 716 1 species 0 715 1 Actinobacillus pleuropneumoniae 388 species 0 Actinobacillus succinogenes 198 67854 1 species 0 14 genus 0 745 3 1 Pasteurella 1852 0 species 495 Pasteurella dagmatis 1 754 1 747 1343 Pasteurella multocida 0 species 2 2094023 660 Glaesserella 1 2 0 genus species 0 Glaesserella parasuis 658 738 1 genus 0 1 Bibersteinia 1 498 476528 2 Bibersteinia trehalosi 497 47735 1 species 0 697331 1 197 genus 0 157673 1 [Mannheimia] succiniciproducens 197 species 0 genus 0 2 Histophilus 1 657 214906 2 species 0 731 1 Histophilus somni 655 0 genus 14 1212 1 Mannheimia 4 75984 2645054 1 318 no rank 0 1 1432056 318 Mannheimia sp. USDA-ARS-USMARC-1261 0 species species 0 75985 1 Mannheimia haemolytica 359 85404 1 Mannheimia varigena 521 species 0 0 class 6 1807140 773 18 0 order 6 225057 773 1 Acidithiobacillales 1 Acidithiobacillaceae 755 225058 5 family 0 8 genus 0 17 Acidithiobacillus 1 747 119977 4 1 160808 219 Acidithiobacillus ferrivorans 0 species 0 species 191 Acidithiobacillus ferrooxidans 1 920 0 species 1 33059 320 Acidithiobacillus caldus