members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 28979948 40381 4744 31 0 name 0 1 Bacteria superkingdom 167 4431 2 28885387 0 1 11 phylum 508458 7470 0 649775 7470 0 1 Synergistia class 26 11 10 Synergistales order 10 1 649776 7444 0 1 0 649777 7434 9 family 89 Synergistaceae genus 1 0 81466 354 1 Aminobacterium colombiense species 81468 354 0 336260 372 0 1 genus 0 336261 372 species Thermovirga lienii 1 404 49894 0 1 Acetomicrobium 1 genus 2 1 species Acetomicrobium mobile 0 97477 403 81461 617 0 1 Thermanaerovibrio genus 7 2 0 81462 610 species Thermanaerovibrio acidaminovorans 1 0 5598 508459 1 13 genus Cloacibacillus 2 0 1197717 5585 1 species Cloacibacillus porcorum 1 57723 9604 0 21 Acidobacteria phylum 3 1562566 1078 0 1 Blastocatellia class 1 3 Chloracidobacterium genus 4 2 458032 1077 0 1 0 458033 1073 1 species Chloracidobacterium thermophilum 17 Acidobacteriia class 74 1 204432 8523 0 1 0 204433 6694 12 order 90 Acidobacteriales 0 6604 204434 1 107 family Acidobacteriaceae 11 0 940557 2053 1 genus 34 Granulicella 3 0 1021 940615 species Granulicella tundricola 1 998 940614 0 Granulicella mallensis species 1 Terriglobus genus 3 3 392733 2208 0 1 1048 392734 0 1 Terriglobus roseus species Terriglobus saanensis species 1 870903 1157 0 0 658061 1140 1 genus 36 Candidatus Koribacter 2 0 658062 1104 species Candidatus Koribacter versatilis 1 1 0 33973 1096 2 genus 3 Acidobacterium 0 33075 1093 species Acidobacterium capsulatum 1 4 Solibacterales 82 order 1 1755 332160 0 3 family 14 Solibacteraceae 1 0 332161 1673 Candidatus Solibacter 11 genus 2 1659 332162 0 1 1648 332163 0 Candidatus Solibacter usitatus species 1 0 1930617 1142 3 phylum 3 class 1142 1962850 0 3 order Calditrichales 3 0 1142 1962852 1 1139 1962854 0 1 Calditrichaceae 5 family 2 0 1134 187144 1 genus 1134 187145 0 1 Caldithrix abyssi species 14 phylum 40117 4734 0 14 Nitrospira 27 class 1 4734 203693 0 189778 4707 0 1 Nitrospirales order 37 13 0 4670 189779 1 31 family Nitrospiraceae 12 1 1193 179 0 4 Leptospirillum 9 genus 0 439 261385 species group 1 1 species Leptospirillum sp. Group II 'CF-1' 0 439 1660083 1 species group 655606 298 0 0 298 180 species Leptospirillum ferrooxidans 1 0 261386 447 1 species group 0 178606 447 species Leptospirillum ferriphilum 1 0 1234 2730 1 genus 34 Nitrospira 5 Nitrospira defluvii species 1 330214 617 0 1715989 619 0 1 Candidatus Nitrospira inopinata species 1 Nitrospira japonica species 1325564 535 0 0 42253 925 species Nitrospira moscoviensis 1 1 716 28261 0 2 Thermodesulfovibrio 1 genus 0 715 28262 1 species Thermodesulfovibrio yellowstonii 2 phylum 2138240 247 0 247 2138243 0 2 class 2138246 247 0 1 Coprothermobacterales order 2 2 245 2138247 0 1 family 0 68335 245 1 genus species Coprothermobacter proteolyticus 1 0 245 35786 phylum 5 0 68297 1688 1688 203486 0 5 class 1 0 203487 1688 5 order 1 Dictyoglomales 1687 203488 0 1 Dictyoglomaceae 2 family 4 13 1685 0 1 Dictyoglomus genus 1 3 758 513050 0 Dictyoglomus turgidum species 1 14 926 0 1 Dictyoglomus thermophilum species 367 clade 0 12530405 1783270 0 12524313 68336 352 clade phylum 5 2059 1134404 0 5 Ignavibacteria 1 class 1 2059 795747 0 2 order Ignavibacteriales 4 0 2058 795748 1 2 family 1334117 918 0 Melioribacter genus 1 2 1134403 918 0 1 0 1134405 917 1 species Melioribacter roseus 0 795749 1138 family 1 1138 795750 0 1 genus Ignavibacterium album species 1 591197 1138 0 phylum 21 13630 1090 0 Chlorobia class 89 21 191410 13630 0 1 0 191411 13541 1 order 203 Chlorobiales 20 0 13338 191412 1 50 family Chlorobiaceae 19 Chlorobaculum 31 genus 4 3779 256319 0 1 274537 1386 0 Chlorobaculum limnaeum species 1 0 1097 1131 species Chlorobaculum tepidum 1 0 274539 1231 1 species Chlorobaculum parvum genus 1 0 100715 754 100716 754 0 1 Chloroherpeton thalassium species 9 genus Prosthecochloris 5 0 3218 1101 1 2311 2632826 0 3 no rank Prosthecochloris sp. CIB 2401 species 1 1868325 666 0 species Prosthecochloris sp. HL-130-GSB 1 0 1974213 708 0 281093 937 species Prosthecochloris sp. GSB1 1 species Prosthecochloris aestuarii 1 0 1102 898 0 5537 274493 no rank 8 1 0 2076 1099 3 7 genus Pelodictyon 0 34090 938 1 species Pelodictyon phaeoclathratiforme 1131 1100 0 1 Pelodictyon luteolum species 1091 3461 0 1 Chlorobium genus 14 5 1 species Chlorobium phaeovibrioides 0 573 1094 Chlorobium phaeobacteroides species 1 1448 1096 0 species Chlorobium chlorochromatii 1 0 337090 502 1092 924 0 Chlorobium limicola species 1 0 976 12508624 1 phylum 48 Bacteroidetes 326 Bacteroidetes Order II. Incertae sedis 119 order 7 5558 1100069 0 1 67 family Rhodothermaceae 6 0 5439 563843 1 2 Salinibacter genus 3 1 146918 955 0 species Salinibacter ruber 1 0 952 146919 29548 2521 0 1 Rhodothermus genus 21 2 29549 2500 0 1 Rhodothermus marinus species 0 1196022 1896 no rank 1 0 1779382 1896 1 species Rhodothermaceae bacterium RA 1 0 12220154 200643 69 130 class Bacteroidia 1 0 171549 12210861 58 order 2580 Bacteroidales family 2 3870 2005523 0 23 genus Paludibacter 2 0 3870 346096 1 1 species Paludibacter propionicigenes 0 3847 185300 no rank 5 333046 7193770 0 1 0 511434 1645 2 genus 11 Candidatus Azobacteroides 0 1634 511435 species Candidatus Azobacteroides pseudotrichonymphae 1 7192125 909656 0 3 genus 0 1324147 357276 species Bacteroides dorei 1 1 species Bacteroides vulgatus 0 5750168 821 376805 117810 0 Bacteroides salanitronis species 1 0 2005520 19956 family 5 genus 1 Petrimonas 2 0 307628 6425 1 6424 1642646 0 1 Petrimonas mucosa species 1 genus 5308 1784836 0 0 1562970 5308 1 species Fermentimonas caenicola 1 294702 8223 0 2 Proteiniphilum genus 26 1642647 8197 0 Proteiniphilum saccharofermentans species 1 0 2005519 217472 1 family 15 Barnesiellaceae 3 2 Barnesiella genus 164 1 397864 217457 0 0 397865 217293 1 species Barnesiella viscericola 1 171552 305744 0 11 Prevotellaceae family 25 1 305719 838 0 10 Prevotella 437 genus 0 52227 11238 1 species Prevotella dentalis 1 species Prevotella enoeca 0 76123 6127 1 Prevotella jejuni species 6492 1177574 0 0 839 8645 species Prevotella ruminicola 1 1 Prevotella fusca species 7072 589436 0 Prevotella melaninogenica species 1 5982 28132 0 0 28131 248721 species Prevotella intermedia 1 1 species Prevotella denticola 0 28129 8090 2638335 2915 0 1 no rank 0 2915 652716 species Prevotella sp. oral taxon 299 1 4 family 115 Porphyromonadaceae 1 0 171551 13138 Porphyromonas 18 genus 3 13023 836 0 1 1 Porphyromonas asaccharolytica species 2082 28123 0 1 Porphyromonas gingivalis species 10923 837 0 0 171550 254122 1 family 23 Rikenellaceae 5 Alistipes genus 95 2 239759 251060 0 1 species Alistipes finegoldii 1 0 250965 214856 1 3039 1611681 0 2 Mucinivorans 5 genus 0 3034 1433126 1 species Mucinivorans hirudinis 7 251 family Tannerellaceae 1 0 624775 2005525 Parabacteroides 341 genus 3 570654 375288 0 1 1 no rank 0 2649774 408953 1 Parabacteroides sp. CT06 species 2025876 408953 0 Parabacteroides distasonis species 1 161360 823 0 1 195950 53870 0 3 Tannerella genus 143 1 Tannerella forsythia species 44454 28112 0 no rank 1 0 2620507 9273 1 Tannerella sp. oral taxon HOT-286 species 9273 712710 0 3 Odoribacteraceae family 2 1 1853231 312760 0 2 Odoribacter genus 5 1 283168 312758 0 species Odoribacter splanchnicus 1 0 28118 312753 1 0 3260344 815 11 75 family Bacteroidaceae 0 816 3260269 1 genus 130760 Bacteroides 10 0 177095 290053 species Bacteroides helcogenes 1 283175 47678 0 Bacteroides caccae species 1 0 489537 1796613 species Bacteroides caecimuris 1 439443 817 0 Bacteroides fragilis species 1 147204 28119 0 1 Bacteroides zoogleoformans species 1 Bacteroides heparinolyticus species 146997 28113 0 Bacteroides cellulosilyticus species 1 246787 304709 0 1 species Bacteroides ovatus 0 28116 369640 771709 818 0 1 Bacteroides thetaiotaomicron species 1 no rank 0 185291 2330 1 Bacteroidales bacterium CF species 2330 1400053 0 10 Marinilabiliales 25 order 1 9163 1970189 0 1 family Salinivirgaceae 2 0 1278 1970190 1 1 genus 1277 1970191 0 1307839 1277 0 Salinivirga cyanobacteriivorans species 1 1 3279 1471398 0 3 Prolixibacteraceae 7 family Draconibacterium genus 13 2 1471399 3272 0 1 species Draconibacterium orientale 1 0 1168034 3259 2 Marinilabiliaceae 1 family 1 2205 558415 0 1193324 2204 0 genus 1 Alkalitalea saponilacus species 1 2204 889453 0 1573805 2376 0 1 Marinifilaceae family 2 2 genus 1 0 2374 2060722 1717717 2374 0 Marinifilaceae bacterium SPP2 species 1 1 0 172522 117743 143 108 class Flavobacteriia 142 Flavobacteriales order 157 1 200644 172414 0 313602 541 0 2 no rank 0 330 336809 genus 1 1 Candidatus Sulcia muelleri species 336810 330 0 0 211 1940138 genus 1 Candidatus Walczuchella monophlebidarum species 1 1415657 211 0 49546 90613 0 1 Flavobacteriaceae family 2662 100 1 252306 1147 0 2 Robiginitalea genus 2 0 252307 1145 species Robiginitalea biformata 1 252356 3112 0 genus 4 3 no rank 0 2361 2615042 Maribacter sp. HTCC2170 species 1 313603 912 0 species Maribacter sp. 1_2014MBL_MicDiv 1 0 754 1644130 Maribacter sp. T28 species 1 695 1836467 0 Maribacter cobaltidurans species 1 751 1178778 0 0 1209 1209327 genus 1 1209 1803846 0 Flavivirga eckloniae species 1 1 0 104267 3226 5 genus 19 Tenacibaculum 0 107401 727 species Tenacibaculum maritimum 1 0 1850252 853 species Tenacibaculum todarodis 1 0 922 584609 species Tenacibaculum jejuense 1 705 669041 0 Tenacibaculum dicentrarchi species 1 111500 2506 0 1 Muricauda genus 1 3 1630 111501 0 Muricauda ruestringensis species 1 1 Muricauda lutaonensis species 516051 875 0 1 genus 0 948 1649495 2622645 948 0 no rank 1 948 1936081 0 1 Seonamhaeicola sp. S2-3 species 2558 61432 0 2 no rank species Flavobacteriaceae bacterium 3519-10 1 0 531844 1202 0 1356 1150389 species Flavobacteriaceae bacterium UJ101 1 Dokdonia 27 genus 4 1771 326319 0 1 536 326320 0 1 Dokdonia donghaensis species 1208 2615033 0 no rank 2 Dokdonia sp. 4H-3-7-5 species 1 983548 754 0 0 454 313590 1 species Dokdonia sp. MED134 genus 6 Lacinutrix 4 0 291183 2226 1 1522 2647285 0 2 no rank 1 species Lacinutrix sp. Bg11-31 0 878 2057808 Lacinutrix sp. 5H-3-7-4 species 1 644 983544 0 0 698 1486034 species Lacinutrix venerupis 1 0 1130 112040 1 genus Zobellia galactanivorans species 1 63186 1130 0 genus 1 0 802 393005 0 802 2069432 species Tamlana sp. UJ94 1 225842 1102 0 1 Formosa genus 2 3 no rank 2 2644710 1100 0 1336795 359 0 Formosa sp. Hel3_A1_48 species 1 1 Formosa sp. Hel1_33_131 species 741 1336794 0 31 genus Flavobacterium 9 0 11993 237 1 0 824 96345 1 species Flavobacterium psychrophilum 0 1306519 1337 species Flavobacterium commune 1 1 species Flavobacterium columnare 0 996 1747 species Flavobacterium johnsoniae 1 0 986 3621 55197 918 0 Flavobacterium branchiophilum species 1 0 2058 1492737 species Flavobacterium gilvum 1 0 816 312277 1 species Flavobacterium indicum 1 species Flavobacterium crassostreae 0 1763534 641 2 1 genus Psychroflexus 1 0 812 83612 Psychroflexus torquis species 1 811 57029 0 1 0 1188 417127 2 4 genus Zunongwangia species Zunongwangia profunda 1 0 1184 398743 734 216431 0 1 genus 734 313588 0 Croceibacter atlanticus species 1 genus 4 Nonlabens 5 0 363408 2506 1 1 Nonlabens dokdonensis species 328515 593 0 2 no rank 0 1280 2615035 1 Nonlabens sp. MB-3u-79 species 669 2058134 0 1476901 611 0 Nonlabens sp. MIC269 species 1 629 319236 0 1 Nonlabens sediminis species genus 1 794 153265 0 101385 794 0 Aequorivita sublithincola species 1 1 genus 0 336276 769 2615019 769 0 no rank 1 0 769 2058135 1 species Olleya sp. Bg11-27 genus 1 1204360 866 0 species Siansivirga zeaxanthinifaciens 1 0 866 762954 5 Myroides 67 genus 1 4614 76831 0 480520 932 0 Myroides profundi species 1 2 no rank 2407 2642485 0 0 1196 1458492 species Myroides sp. ZB35 1 0 1583100 1211 1 species Myroides sp. A21 Myroides odoratimimus species 1 76832 1208 0 genus 1 888 261827 0 1736674 888 0 Algibacter alginicilyticus species 1 1 0 1075 143222 2 2 genus Salegentibacter no rank 1 0 2633436 1073 1073 1729720 0 Salegentibacter sp. T436 species 1 852 358023 0 1 genus 1622118 852 0 Lutibacter profundi species 1 1 0 178469 1045 2 genus 1 Arenibacter Arenibacter algicola species 1 616991 1044 0 1812 286104 0 genus 2 0 2615021 1812 no rank 2 species Winogradskyella sp. J14-2 1 0 905 1936080 species Winogradskyella sp. PG-2 1 0 754409 907 0 507 389486 1 genus 2648869 507 0 1 no rank 1453352 507 0 Sediminicola sp. YIK13 species 1 94 genus Capnocytophaga 15 0 21128 1016 1 1 species Capnocytophaga haemolytica 0 45243 1327 1 species Capnocytophaga cynodegmi 0 28189 1160 species Capnocytophaga sputigena 1 0 1019 2396 1 Capnocytophaga ochracea species 1555 1018 0 1 species Capnocytophaga stomatis 0 1576 1848904 1 species Capnocytophaga canimorsus 0 1652 28188 2640652 7753 0 6 no rank 1705617 1247 0 Capnocytophaga sp. oral taxon 323 species 1 0 1945658 937 1 species Capnocytophaga sp. H4358 0 1976 1316596 species Capnocytophaga sp. oral taxon 878 1 922 1945657 0 Capnocytophaga sp. H2931 species 1 species Capnocytophaga sp. oral taxon 864 1 0 1316593 1228 0 209053 1443 1 species Capnocytophaga sp. ChDC OS43 1 Capnocytophaga gingivalis species 1017 1152 0 species Capnocytophaga leadbetteri 1 0 327575 2463 1 genus 650 1176327 0 no rank 1 2636237 650 0 1 Aureitalea sp. RR4-38 species 650 2094025 0 1 genus 1518147 788 0 788 1790137 0 Wenyingzhuangia fucanilytica species 1 3 genus 0 104264 2945 979 1066 0 1 Cellulophaga lytica species species Cellulophaga baltica 1 0 1050 76594 59600 829 0 1 Cellulophaga algicola species 2700084 980 0 genus 1 species Lutibacter sp. LPB0138 1 0 980 1850246 1 52959 5250 0 6 Polaribacter genus 10 1774273 1324 0 Polaribacter vadi species 1 3 no rank 2770 196858 0 1 Polaribacter sp. ALD11 species 2058137 966 0 0 1098 1529069 species Polaribacter sp. BM10 1 0 313598 706 species Polaribacter sp. MED152 1 Polaribacter reichenbachii species 1 1146 996801 0 1 0 4018 292691 5 15 genus Gramella 1 Gramella sp. SH35 species 1455 2126553 0 0 971 411153 species Gramella forsetii 1 0 558 1913577 species Gramella sp. LPB0144 1 0 1019 1486245 species Gramella flava 1 10 3 family Blattabacteriaceae 1 0 2177 39782 1 0 34098 2174 9 genus 43 Blattabacterium 2647581 1496 0 6 no rank Blattabacterium sp. (Periplaneta americana) species 1 367488 219 0 203 367806 0 Blattabacterium sp. (Blatta orientalis) species 1 Blattabacterium sp. (Blaberus giganteus) species 1 1186051 270 0 1 Blattabacterium sp. (Mastotermes darwiniensis) species 39768 200 0 1316444 287 0 1 Blattabacterium sp. (Nauphoeta cinerea) species 0 317 624186 1 species Blattabacterium sp. (Blattella germanica) 1 species Blattabacterium punctulatus 0 164514 219 1653831 416 0 Blattabacterium cuenoti species 1 2 246874 0 1 Cryomorphaceae family 0 76139 2762318 21 family 0 308865 10488 1 genus 47 Elizabethkingia 6 0 238 1395 species Elizabethkingia meningoseptica 1 1 species Elizabethkingia genomosp. 3 0 1377 1756149 0 1117645 4104 species Elizabethkingia anophelis 1 2171 172045 0 Elizabethkingia miricola species 1 Elizabethkingia genomosp. 4 species 1 1394 1756150 0 2 Riemerella genus 2 1 34084 1775 0 species Riemerella anatipestifer 1 0 1773 34085 2 Ornithobacterium genus 175 1 28250 47971 0 1 Ornithobacterium rhinotracheale species 47796 28251 0 1 genus 0 715 1013 1 species Weeksella virosa 0 1014 715 0 15190 2782232 10 no rank genus 73 Chryseobacterium 9 0 59732 13621 1 species Chryseobacterium piperi 1 0 558152 1261 0 4528 2593645 no rank 3 1 Chryseobacterium sp. StRB126 species 1471 878220 0 0 1721091 1342 species Chryseobacterium sp. IHB B 17019 1 Chryseobacterium sp. T16E-39 species 1 1715 2015076 0 1 Chryseobacterium indologenes species 253 3083 0 species Chryseobacterium gallinarum 1 0 1324352 1439 1 Chryseobacterium glaciei species 1685010 1359 0 1265445 1878 0 1 Chryseobacterium camelliae species 1 genus 0 1569 2782228 1 species Chryseobacterium taklimakanense 0 536441 1569 1 1755828 414 0 2 Ichthyobacteriaceae family 1 1 genus 0 1755829 413 0 413 242600 1 species Ichthyobacterium seriolicida 3 1 family Crocinitomicaceae 1 0 1215 1853230 Fluviicola genus 28 2 332102 1214 0 1 0 1186 191579 species Fluviicola taffensis 1 0 1333713 1156 2 family 2 11 genus Owenweeksia 1 0 1156 267986 species Owenweeksia hongkongensis 1 0 1145 253245 Sphingobacteriia class 14 24 117747 33025 0 1 23 45 order Sphingobacteriales 1 0 33011 200666 22 Sphingobacteriaceae family 63 1 84566 32966 0 7786 28453 0 1 Sphingobacterium 59 genus 6 no rank 4 6456 2609468 0 1 species Sphingobacterium sp. B29 0 1933220 1650 1 species Sphingobacterium sp. 21 0 1694 743722 Sphingobacterium sp. G1-14 species 1 2003121 1589 0 species Sphingobacterium sp. ML3W 1 0 1523 1538644 species Sphingobacterium mizutaii 1 0 1010 1271 4 34 genus Mucilaginibacter 1 0 4644 423349 0 2617802 1568 no rank 1 1568 1300914 0 Mucilaginibacter sp. PAMC 26640 species 1 species Mucilaginibacter gotjawali 1 0 1550579 1601 0 1441 1234841 species Mucilaginibacter sp. BJC16-A31 1 1649482 1706 0 1 Pseudopedobacter genus 11 2 1 Pseudopedobacter saltans species 151895 1695 0 no rank 1 84568 1369 0 0 1369 1986952 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1 genus 44 Pedobacter 6 0 84567 15231 1 no rank 1 0 1659 2628915 0 1659 1727164 species Pedobacter sp. PACM 27299 1 0 1631 984 1 species Pedobacter heparinus 188932 8390 0 Pedobacter cryoconitis species 1 Pedobacter steynii species 1 1994 430522 0 0 363852 1513 1 species Pedobacter ginsengisoli 2 Solitalea 3 genus 1 2167 929509 0 2164 995 0 1 Solitalea canadensis species 1853228 14785 0 1 Chitinophagia class 11 16 1 14774 1853229 0 15 Chitinophagales 37 order 563835 14737 0 1 Chitinophagaceae family 51 14 3 Chitinophaga genus 12 1 79328 4798 0 species Chitinophaga pinensis 1 0 79329 2920 0 2029983 1866 1 species Chitinophagaceae bacterium 13 1132 398041 0 1 Flavisolibacter 3 genus 2 0 1492898 1129 species Flavisolibacter tropicus 1 379899 3455 0 1 Niabella genus 8 3 0 446683 1667 species Niabella soli 1 species Niabella ginsenosidivorans 1 0 1780 1176587 Niastella 2 genus 2 1778 354354 0 1 1776 354356 0 1 Niastella koreensis species 17 genus Filimonas 2 0 2116 649460 1 1 species Filimonas lacunae 0 2099 477680 genus 1 1407 1769012 0 0 2636138 1407 1 no rank 1 species Arachidicoccus sp. BS20 0 1407 1850526 1 2846 1937959 0 6 Saprospiria 8 class order 14 Saprospirales 5 0 1936988 2838 1 0 644 89374 family 1 genus 1 0 644 1007 species Saprospira grandis 1 0 644 1008 Haliscomenobacteraceae 2 family 3 2180 1937961 0 1 Haliscomenobacter genus 2 2 2349 2178 0 1 2176 2350 0 Haliscomenobacter hydrossis species 1 1 59686 768503 0 60 Cytophagia 95 class 59591 768507 0 1 Cytophagales 201 order 59 family 2 1344 2762301 0 0 1344 869806 1 10 genus Marivirga 2 species Marivirga tractuosa 1 0 1006 1334 1 1937968 1325 0 3 Bernardetiaceae family 6 3 genus Bernardetia 2 0 1319 1937972 1 1316 999 0 1 Bernardetia litoralis species 1 634 1501348 0 4 Amoebophilaceae 4 family 0 273135 371 1 genus 1 no rank 0 2641185 371 1 Cardinium endosymbiont of Encarsia pergandiella species 249402 371 0 2 genus 1 Candidatus Amoebophilus 1 0 281119 259 0 258 281120 species Candidatus Amoebophilus asiaticus 1 2546 1853234 0 1 Persicobacteraceae 1 family 3 Persicobacter genus 4 2 59740 2545 0 1 0 2664020 2541 no rank 1 0 2541 1085624 species Persicobacter sp. JZB09 1 1 5986 563798 0 9 Cyclobacteriaceae 10 family 68288 2370 0 1 Cyclobacterium genus 16 3 0 320787 1225 1 species Cyclobacterium amurskyense 1129 104 0 Cyclobacterium marinum species 1 2 14 genus Echinicola 1 0 1565 390846 0 1551 390884 1 species Echinicola vietnamensis genus 1 0 920 246875 1 species Algoriphagus sp. M8-2 0 1727163 920 232244 1121 0 1 Belliella genus 11 2 Belliella baltica species 1 1110 232259 0 Flammeovirgaceae 10 family 4 4041 200667 0 1 no rank 1 0 2068 340671 0 2068 1257021 1 species Flammeovirgaceae bacterium 311 2 Flammeovirga 9 genus 1 1963 59739 0 2637820 1954 0 1 no rank 1 species Flammeovirga sp. MY04 0 1954 1191459 0 1853232 27590 1 family 87 Hymenobacteraceae 16 0 4395 1379908 1 30 genus Rufibacter 4 Rufibacter tibetensis species 1 1689 512763 0 2676 2639626 0 no rank 2 1379910 1410 0 Rufibacter sp. DG31D species 1 species Rufibacter sp. DG15C 1 0 1266 1379909 1 0 19087 89966 8 170 genus Hymenobacter species Hymenobacter swuensis 1 0 1446467 2491 2946 1411621 0 Hymenobacter sedentarius species 1 no rank 5 0 2615202 13480 Hymenobacter sp. DG25A species 1 1726 1385663 0 1 Hymenobacter sp. PAMC 26628 species 1484118 3131 0 1385664 2031 0 Hymenobacter sp. DG25B species 1 1 species Hymenobacter sp. APR13 0 3400 1356852 1484116 3192 0 Hymenobacter sp. PAMC 26554 species 1 0 323449 4021 1 genus 2 Pontibacter 3 species Pontibacter akesuensis 1 0 388950 2195 0 400092 1824 species Pontibacter korlensis 1 1 89373 15924 0 17 Cytophagaceae family 48 861914 1375 0 1 Fibrella genus 2 2 no rank 1 0 1373 2620963 1 Fibrella sp. ES10-3-2-2 species 1834519 1373 0 1 0 319458 1355 2 genus 6 Leadbetterella Leadbetterella byssophila species 1 316068 1349 0 0 2071 105 1 3 genus Runella 2 1 Runella slithyformis species 106 2068 0 6 genus Dyadobacter 2 0 2129 120831 1 Dyadobacter fermentans species 1 2123 94254 0 1 107 7612 0 6 Spirosoma genus 32 0 1379870 1364 1 species Spirosoma radiotolerans 0 564064 1593 species Spirosoma rigui 1 1 Spirosoma sp. HA7 species 2057025 1440 0 0 1881 1178516 1 species Spirosoma montaniterrae species Spirosoma aerolatum 1 0 1302 1211326 genus 8 Cytophaga 2 0 978 1334 1 0 985 1326 1 species Cytophaga hutchinsonii 0 542 456828 phylum 2 1 456826 542 0 2 Candidatus Cloacimonas genus 2 Candidatus Cloacimonas acidaminovorans species 1 456827 540 0 5 phylum 0 65842 1846 0 204430 1846 1 class 5 Fibrobacteria 5 Fibrobacterales 5 order 4 1841 218872 0 1 0 204431 1836 1 family 3 Fibrobacteraceae 3 2 15 genus Fibrobacter 1 0 1833 832 1 species Fibrobacter succinogenes 0 1818 833 3704 142182 0 8 phylum 1 219685 3704 0 8 Gemmatimonadetes class 10 Gemmatimonadales order 86 7 219686 3694 0 1 1 3608 219687 0 6 Gemmatimonadaceae 21 family 2 genus 16 Gemmatirosa 1 0 1706036 1916 1 species Gemmatirosa kalamazoonesis 0 1900 861299 3 Gemmatimonas 32 genus 1 1671 173479 0 0 173480 917 species Gemmatimonas aurantiaca 1 species Gemmatimonas phototrophica 1 0 722 1379270 5 phylum 0 200938 1380 5 class 6 Chrysiogenetes 1 0 118001 1380 order 21 Chrysiogenales 4 0 189769 1374 1 family 8 Chrysiogenaceae 3 0 189770 1353 1 1 0 1345 393029 2 24 genus Desulfurispirillum 0 1321 936456 1 species Desulfurispirillum indicum 0 1783272 14519841 clade 1714 899 67819 0 5 phylum 5 3 class Fimbriimonadia 1 0 899 1663419 0 896 1663425 1 1 order Fimbriimonadales 4 family 14 Fimbriimonadaceae 3 0 1663426 895 1 genus 13 Fimbriimonas 2 0 1005038 881 1 0 868 1005039 1 species Fimbriimonas ginsengisoli 36 phylum 25450 1297 0 1 188787 25450 0 36 Deinococci class 166 order 3 0 2762275 847 3 family 20 Trueperaceae 1 0 332247 847 Truepera 11 genus 2 827 332248 0 1 1 Truepera radiovictrix species 332249 816 0 118964 16306 0 1 Deinococcales order 258 15 14 Deinococcaceae 94 family 1 16048 183710 0 13 Deinococcus genus 212 1 1298 15954 0 0 309887 1164 species Deinococcus maricopensis 1 Deinococcus swuensis species 1 1631 1182571 0 1 Deinococcus peraridilitoris species 432329 902 0 1 no rank 2623546 1302 0 species Deinococcus sp. NW-56 1 0 2080419 1302 1533 1299 0 Deinococcus radiodurans species 1 1 Deinococcus gobiensis species 1638 502394 0 0 1768108 1256 1 species Deinococcus actinosclerus species Deinococcus soli Cha et al. 2016 1 0 1309411 1329 1 species Deinococcus geothermalis 0 1007 68909 1182568 1090 0 1 Deinococcus puniceus species 0 310783 1103 1 species Deinococcus deserti 1787 55148 0 1 Deinococcus proteolyticus species 1 0 68933 8131 17 order 127 Thermales 1 188786 8004 0 16 Thermaceae family 80 3 Meiothermus 15 genus 1 1777 65551 0 965 277 0 Meiothermus ruber species 1 52022 797 0 1 Meiothermus silvanus species genus 82 Thermus 8 0 270 4298 1 Thermus scotoductus species 1 37636 473 0 Thermus parvatiensis species 1 456163 453 0 species Thermus thermophilus 1 0 274 1246 300 56956 0 1 Thermus brockianus species 56957 508 0 1 Thermus oshimai species 1 no rank 0 571 2619321 0 571 1111069 1 species Thermus sp. CCB_US3_UF1 271 665 0 1 Thermus aquaticus species 1 0 532 186191 2 2 genus Marinithermus 530 186192 0 Marinithermus hydrothermalis species 1 1 0 1317 208447 2 8 genus Oceanithermus 1 species Oceanithermus profundus 0 1309 187137 1 0 41688 544448 101 3 phylum Tenericutes 54 class Mollicutes 97 0 38006 31969 1 1 13492 2085 0 44 Mycoplasmatales 11 order 0 13481 2092 1 59 family Mycoplasmataceae 43 4883 2767358 0 12 genus 1 Mycoplasma californicum species 2113 328 0 2109 366 0 1 Mycoplasma synoviae species 0 2094 489 species Mycoplasma arginini 1 species Mycoplasma bovigenitalium 1 0 2112 354 1 Mycoplasma pullorum species 318 48003 0 1 species Mycoplasma pulmonis 0 2107 235 1 Mycoplasma canis species 29555 577 0 Mycoplasma cynos species 1 371 171284 0 528 28903 0 1 Mycoplasma bovis species 496 2115 0 1 Mycoplasma fermentans species species Mycoplasma agalactiae 1 0 2110 412 1 species Mycoplasma bovirhinis 0 29553 409 3 Ureaplasma 1 genus 1 669 2129 0 362 134821 0 1 Ureaplasma parvum species 2130 306 0 Ureaplasma urealyticum species 1 27 107 genus Mycoplasma 1 0 7870 2093 Mycoplasma crocodyli species 1 528 50052 0 725 2098 0 1 Mycoplasma hominis species 1 Mycoplasma bovoculi species 45362 166 0 Mycoplasma flocculare species 1 106 2128 0 species group 3 0 1718 656088 0 556 2095 species Mycoplasma capricolum 1 0 2105 410 1 species Mycoplasma leachii 1 species Mycoplasma mycoides 0 752 2102 86660 201 0 Mycoplasma dispar species 1 2099 232 0 Mycoplasma hyopneumoniae species 1 Mycoplasma gallisepticum species 1 2096 217 0 280 2111 0 1 Mycoplasma arthritidis species Mycoplasma wenyonii species 1 65123 58 0 0 57372 202 species Mycoplasma suis 1 1 species Mycoplasma canadense 0 313 29554 0 29501 87 1 species Mycoplasma haemofelis 0 501 28227 species Mycoplasma penetrans 1 0 2097 159 species Mycoplasma genitalium 1 0 84 171632 species Mycoplasma ovis 1 1 no rank 393 2683645 0 0 1749074 393 species Mycoplasma sp. (ex Biomphalaria glabrata) 1 0 51365 521 1 species Mycoplasma yeatsii 348 2100 0 Mycoplasma hyorhinis species 1 1 species Mycoplasma haemocanis 0 136241 58 Mycoplasma pneumoniae species 1 2104 109 0 1 species Mycoplasma putrefaciens 0 313 2123 0 2118 352 1 species Mycoplasma mobile 984991 92 0 1 Mycoplasma parvum species 13 Acholeplasmatales 16 order 1 7199 186329 0 12 Acholeplasmataceae family 64 1 2146 7183 0 5 genus 57 Acholeplasma 1 0 2147 5294 980 61635 0 1 Acholeplasma brassicae species 0 35623 1367 1 species Acholeplasma oculi 0 967 2148 1 species Acholeplasma laidlawii 1923 38986 0 1 Acholeplasma palmae species 1 0 1825 33926 6 42 genus Candidatus Phytoplasma 1 species group 303 85632 0 0 59748 303 1 species Candidatus Phytoplasma australiense 0 85630 289 species group 1 1 Candidatus Phytoplasma mali species 289 37692 0 3 species group 0 85620 1191 Maize bushy stunt phytoplasma species 1 202462 409 0 229545 389 0 1 Aster yellows witches'-broom phytoplasma species 1 species Onion yellows phytoplasma 0 100379 393 order 33 Entomoplasmatales 39 0 186328 17261 1 1 0 33925 5421 14 family 15 Entomoplasmataceae Mesoplasma genus 208 8 46239 3768 0 1 216427 342 0 Mesoplasma chauliocola species 1 219745 336 0 Mesoplasma tabanidae species 1 0 225999 551 1 species Mesoplasma syrphidae 324078 428 0 1 Mesoplasma coleopterae species 0 2151 898 species Mesoplasma florum 1 0 447 2149 species Mesoplasma entomophilum 1 1 species Mesoplasma lactucae 0 558 138853 1638 46238 0 1 Entomoplasma 44 genus 5 380 215578 0 Entomoplasma somnilux species 1 species Entomoplasma luminosum 1 0 285 214888 74700 250 0 1 Entomoplasma freundtii species 0 81459 679 species Entomoplasma melaleucae 1 1 2131 11807 0 24 Spiroplasmataceae family 58 0 2132 11749 1 genus 386 Spiroplasma 23 376 216933 0 1 Spiroplasma chrysopicola species 1 Spiroplasma diminutum species 216936 602 0 315358 551 0 Spiroplasma eriocheiris species 1 944 2637901 0 2 no rank species Spiroplasma sp. TU-14 1 0 472 1898044 472 1914410 0 1 Spiroplasma sp. NBRC 100390 species 393 216945 0 Spiroplasma syrphidicola species 1 Spiroplasma litorale species 1 216942 499 0 species Spiroplasma culicicola 1 0 216935 642 0 453 2145 species Spiroplasma taiwanense 1 1 Spiroplasma monobiae species 2136 546 0 Spiroplasma citri species 1 2133 561 0 Spiroplasma mirum species 1 355 2144 0 Spiroplasma cantharicola species 1 790 362837 0 Spiroplasma helicoides species 1 216938 578 0 0 474 216934 1 species Spiroplasma corruscae 0 2137 412 1 species Spiroplasma apis species Spiroplasma clarkii 1 0 607 2139 species Spiroplasma floricola 1 0 673 216937 216946 654 0 Spiroplasma turonicum species 1 species Spiroplasma sabaudiense 1 0 382 216944 1114980 363 0 1 Spiroplasma atrichopogonis species 1 species Spiroplasma kunkelii 0 508 47834 0 2698 713063 no rank 2 1 Tenericutes bacterium MZ-XQ species 1911683 1289 0 0 1409 1911684 1 species Tenericutes bacterium MO-XQ 1 no rank 981 2799557 0 0 1912503 981 1 genus 0 2624196 981 1 no rank 1 Candidatus Izimaplasma sp. HR1 species 981 1541959 0 2 no rank 0 533 1859062 2 genus 12 Thermobaculum 1 0 262406 533 1 Thermobaculum terrenum species 166501 521 0 724 phylum 380 Firmicutes 1 0 1239 13639396 no rank 2 2290 33974 0 39 genus Ndongobacter 2 0 2290 1930845 1 0 2251 1871025 1 species Ndongobacter massiliensis Negativicutes 74 class 31 74272 909932 0 1 Acidaminococcales order 72 5 1843488 22911 0 1 Acidaminococcaceae 50 family 4 22839 909930 0 1 904 22789 0 1 Acidaminococcus genus 49 3 1 species Acidaminococcus intestini 0 187327 15545 0 7195 905 species Acidaminococcus fermentans 1 Selenomonadales order 126 14 909929 28068 0 1 1 0 1843490 4678 4 family 10 Sporomusaceae 0 4668 365348 1 18 genus Pelosinus 3 365349 2450 0 Pelosinus fermentans species 1 no rank 1 0 2200 2629460 1 species Pelosinus sp. UFO1 0 484770 2200 1843491 23264 0 1 Selenomonadaceae family 97 9 2 Megamonas 4 genus 1 3331 158846 0 0 158847 3327 1 species Megamonas hypermegale 0 970 19836 1 genus 210 Selenomonas 6 2637378 9142 0 no rank 3 Selenomonas sp. oral taxon 136 species 1 3187 713030 0 0 1884263 2899 species Selenomonas sp. oral taxon 920 1 0 3056 712538 1 species Selenomonas sp. oral taxon 478 1 species Selenomonas ruminantium 0 971 7004 1 Selenomonas sputigena species 69823 3480 0 1 0 23219 1843489 11 1831 order Veillonellales 10 Veillonellaceae 2027 family 1 21388 31977 0 Negativicoccus genus 9 2 909928 1463 0 1 1 Negativicoccus massiliensis species 1454 1702287 0 Dialister 21 genus 2 1573 39948 0 1 39950 1552 0 1 Dialister pneumosintes species 1 0 29465 7381 3 genus 46 Veillonella Veillonella parvula species 1 29466 5088 0 248315 2247 0 1 Veillonella rodentium species 1 0 8944 906 2 366 genus Megasphaera Megasphaera elsdenii species 1 8578 907 0 91061 773274 0 1 Bacilli class 283 430 Lactobacillales order 4762 164 186826 405360 0 1 81852 56327 0 1 Enterococcaceae family 116 18 genus 1 1569 51668 0 1569 51669 0 1 Tetragenococcus halophilus species 1 0 2427 2737 3 129 genus Vagococcus 0 519472 1163 species Vagococcus teuberi 1 0 1135 633807 1 species Vagococcus penaei 1 genus 33969 831 0 831 33970 0 Melissococcus plutonius species 1 0 1350 51384 1 genus 2502 Enterococcus 12 0 899 417368 species Enterococcus thailandicus 1 0 53346 1372 1 species Enterococcus mundtii 1 species Enterococcus hirae 0 1546 1354 0 823 37734 1 species Enterococcus casseliflavus species Enterococcus durans 1 0 1526 53345 1352 33241 0 1 Enterococcus faecium species 0 1351 5839 1 species Enterococcus faecalis Enterococcus wangshanyuanii species 1 1369 2005703 0 no rank 3 0 2608891 2267 0 2060307 883 species Enterococcus sp. FDAARGOS_375 1 760 2060306 0 Enterococcus sp. FDAARGOS_163 species 1 1 species Enterococcus sp. CR-Ec1 0 624 2057791 family 5361 Streptococcaceae 49 0 1300 259776 1 1301 246079 0 1 Streptococcus genus 4138 43 2608887 10339 0 7 no rank 1 Streptococcus sp. A12 species 1431 1759399 0 0 1695 1156433 species Streptococcus sp. I-P16 1 2672 1839799 0 1 Streptococcus sp. FDAARGOS_192 species 1135 712633 0 Streptococcus sp. oral taxon 431 species 1 940 1319 0 Streptococcus sp. 'group B' species 1 0 1156431 1623 species Streptococcus sp. I-G2 1 1 species Streptococcus sp. NPS 308 0 843 1902136 57272 1311 0 Streptococcus agalactiae species 1 1 Streptococcus uberis species 1349 840 0 1201 1811193 0 Streptococcus pantholopis species 1 1335 1797 0 1 Streptococcus equinus species 59310 916 0 Streptococcus macedonicus species 1 0 2405 1302 1 species Streptococcus gordonii 1305 1457 0 Streptococcus sanguinis species 1 1313 2597 0 Streptococcus pneumoniae species 1 0 849 1348 species Streptococcus parauberis 1 1308 1779 0 Streptococcus thermophilus species 1 0 822 1814128 1 species Streptococcus halotolerans 0 1307 36412 1 species Streptococcus suis 8527 102684 0 1 Streptococcus infantarius species Streptococcus mitis species 1 28037 2871 0 1825069 939 0 Streptococcus marmotae species 1 species Streptococcus himalayensis 1 0 1888195 674 Streptococcus salivarius species 1 1304 9312 0 1 Streptococcus mutans species 1537 1309 0 1 species Streptococcus oralis 0 1303 2829 0 8058 150055 1 species Streptococcus lutetiensis 1 Streptococcus iniae species 1346 1465 0 0 1025 257758 species Streptococcus pseudopneumoniae 1 671232 58324 0 3 species group 1 species Streptococcus constellatus 0 12985 76860 species Streptococcus intermedius 1 0 1338 2133 43206 1328 0 1 Streptococcus anginosus species 1 species Streptococcus pluranimalium 0 708 82348 0 9312 1326 1 species Streptococcus acidominimus 0 1254 45634 1 species Streptococcus cristatus 1 Streptococcus pyogenes species 2809 1314 0 1 species Streptococcus pasteurianus 0 197614 2852 1 Streptococcus parasanguinis species 1318 4102 0 0 3110 315405 species Streptococcus gallolyticus 1 2566 119603 0 species group 2 0 1334 718 species Streptococcus dysgalactiae 1 1 species Streptococcus equi 0 1848 1336 981 400065 0 Streptococcus merionis species 1 1 1357 8336 0 5 Lactococcus genus 10 0 1450 1363 species Lactococcus garvieae 1 1 species Lactococcus piscium 0 808 1364 1 species Lactococcus raffinolactis 0 1366 1014 1 species Lactococcus lactis 0 1358 5054 1 0 60978 33958 58 492 family Lactobacillaceae 0 1990 2767893 3 genus 733 1581 0 Lactobacillus buchneri species 1 1138822 455 0 1 Lactobacillus curieae species 802 152331 0 1 Lactobacillus parabuchneri species 2767879 5505 0 genus 6 Lactobacillus farciminis species 1 879 1612 0 1 species Lactobacillus alimentarius 0 903 1602 1 species Lactobacillus heilongjiangensis 0 1074467 1021 1 Lactobacillus ginsenosidimutans species 926 1007676 0 1 Lactobacillus crustorum species 746 392416 0 1 species Lactobacillus allii 0 1847728 1030 0 2046 2767886 3 genus 1042 1580 0 Lactobacillus brevis species 1 637971 494 0 Lactobacillus koreensis species 1 510 267363 0 1 Lactobacillus zymae species genus 1 2767892 656 0 Lactobacillus paracollinoides species 1 240427 656 0 2759736 4682 0 genus 3 0 1199 47715 species Lactobacillus rhamnosus 1 1 Lactobacillus paracasei species 1597 1610 0 0 1873 1582 species Lactobacillus casei 1 2767889 1511 0 2 genus 1 Lactobacillus backii species 637 375175 0 0 874 1610 species Lactobacillus coryniformis 1 4 genus 7588 2767887 0 species Lactobacillus ruminis 1 0 2496 1623 0 89059 1046 1 species Lactobacillus acidipiscis 1624 3023 0 Lactobacillus salivarius species 1 1 species Lactobacillus agilis 0 1023 1601 1 3629 1253 0 6 Pediococcus 19 genus 1 species Pediococcus damnosus 0 51663 670 species Pediococcus inopinatus 1 0 514 114090 1 Pediococcus pentosaceus species 1255 839 0 species group 1 995 1670797 0 Pediococcus acidilactici species 1 1254 995 0 Pediococcus claussenii species 1 592 187452 0 1 19692 1578 0 16 Lactobacillus 2183 genus species Lactobacillus kefiranofaciens 1 0 267818 808 0 33959 2438 1 species Lactobacillus johnsonii 1 species Lactobacillus amylolyticus 0 729 83683 4 no rank 0 2176 2620435 0 2099789 606 1 species Lactobacillus sp. CBA3606 390 2099788 0 Lactobacillus sp. CBA3605 species 1 0 545 2108362 1 species Lactobacillus sp. D1501 1 Lactobacillus sp. wkB8 species 635 1545702 0 species Lactobacillus amylovorus 1 0 1604 2868 1 Lactobacillus gasseri species 1606 1596 0 0 109790 764 species Lactobacillus jensenii 1 1 Lactobacillus gallinarum species 52242 866 0 0 1587 1390 species Lactobacillus helveticus 1 1 Lactobacillus acetotolerans species 669 1600 0 1 species Lactobacillus delbrueckii 0 2409 1584 Lactobacillus acidophilus species 1 1579 786 0 genus 1 536 2767890 0 1 species Lactobacillus hokkaidonensis 0 1193095 536 genus 3 3512 2767842 0 1589 1003 0 1 Lactobacillus pentosus species 460 60520 0 1 Lactobacillus paraplantarum species 1 species Lactobacillus plantarum 0 2049 1590 2767885 1651 0 2 genus Lactobacillus sakei species 1 1599 1066 0 585 28038 0 1 Lactobacillus curvatus species 3 genus 0 2742598 3678 0 1598 1896 1 species Lactobacillus reuteri 839 97478 0 1 Lactobacillus mucosae species Lactobacillus fermentum species 1 1613 943 0 1 genus 0 2767876 2190 1 Lactobacillus amylophilus species 2190 1603 0 0 645 2767877 genus 1 148814 645 0 Lactobacillus kunkeei species 1 0 2767881 975 2 genus 0 53444 516 1 species Lactobacillus lindneri Lactobacillus sanfranciscensis species 1 459 1625 0 81850 9021 0 1 Leuconostocaceae family 45 18 1 0 1243 5474 9 genus 45 Leuconostoc 676 33964 0 1 Leuconostoc citreum species 0 583 136609 1 species Leuconostoc kimchii 449 255248 0 Leuconostoc garlicum species 1 species Leuconostoc gelidum 1 0 883 1244 species Leuconostoc lactis 1 0 674 1246 species Leuconostoc carnosum 1 0 442 1252 0 1214 1245 species Leuconostoc mesenteroides 1 2685106 508 0 no rank 1 species Leuconostoc sp. C2 1 0 508 979982 6 genus 18 Weissella 1 0 46255 2830 1 species Weissella koreensis 0 165096 503 0 663 1249 1 species Weissella paramesenteroides species Weissella ceti 1 0 759620 538 1 Weissella cibaria species 465 137591 0 0 643 1631871 species Weissella jogaejeotgali 1 1 0 672 46254 2 2 genus Oenococcus 670 1247 0 Oenococcus oeni species 1 10 family Aerococcaceae 8 0 5765 186827 1 5755 1375 0 1 Aerococcus 121 genus 7 species Aerococcus urinae 1 0 942 1376 128944 786 0 Aerococcus urinaehominis species 1 species Aerococcus christensenii 1 0 936 87541 0 1255 119206 1 species Aerococcus sanguinicola 949 51665 0 Aerococcus urinaeequi species 1 0 1377 766 1 species Aerococcus viridans Carnobacteriaceae family 14 11 186828 7833 0 1 1 191769 1231 0 2 Marinilactibacillus genus 2 2632303 1229 0 no rank 1 1911586 1229 0 1 Marinilactibacillus sp. 15R species 3 genus 12 Jeotgalibaca 1 0 1470540 2316 species Jeotgalibaca dankookensis 1 0 708126 984 no rank 1 2621505 1320 0 species Jeotgalibaca sp. PTS2502 1 0 1320 1903686 1 4272 2747 0 5 Carnobacterium 17 genus species Carnobacterium maltaromaticum 1 0 1317 2751 1230 147709 0 1 Carnobacterium inhibens species 0 257487 1708 2 no rank 1564681 714 0 Carnobacterium sp. CP1 species 1 0 994 208596 1 species Carnobacterium sp. 17-4 no rank 1 898 263855 0 0 898 1993866 1 species Lactobacillales bacterium 1033 order Bacillales 265 0 367631 1385 1 27 Planococcaceae 83 family 1 26571 186818 0 Jeotgalibacillus genus 8 2 157226 1893 0 1 1885 1508404 0 Jeotgalibacillus malaysiensis species 1 1 7039 1569 0 5 Sporosarcina 71 genus 2 no rank 0 2647733 2613 1400 1930764 0 1 Sporosarcina sp. P33 species species Sporosarcina sp. P37 1 0 1930546 1213 1085 1476 0 Sporosarcina psychrophila species 1 0 3270 1571 1 species Sporosarcina ureae 1 648802 1163 0 2 Rummeliibacillus genus 3 species Rummeliibacillus stabekisii 1 0 1160 241244 2 Kurthia 5 genus 1 1367 1649 0 no rank 1 0 1362 2644826 Kurthia sp. 11kri321 species 1 1362 1750719 0 1 11276 1372 0 12 Planococcus 179 genus 1 species Planococcus halocryophilus 0 876 1215089 1302659 640 0 Planococcus sp. L10.15 species 1 Planococcus rifietoensis species 1 200991 1010 0 0 1019 1038856 species Planococcus plakortidis 1 0 2662419 1758 no rank 2 1 Planococcus sp. MB-3u-03 species 1127 2058136 0 1 Planococcus sp. PAMC 21323 species 1526927 631 0 1 Planococcus maritimus species 192421 2288 0 1 Planococcus donghaensis species 414778 1218 0 0 792 1374 species Planococcus kocurii 1 Planococcus antarcticus species 1 161360 900 0 1 Planococcus faecalis species 596 1598147 0 1 0 3750 648800 3 17 genus Solibacillus Solibacillus silvestris species 1 76853 2341 0 no rank 1 2637870 1392 0 1 species Solibacillus sp. R5-41 0 2048654 1392 2 3 family Sporolactobacillaceae 1 0 1455 186821 663587 1452 0 1 no rank 1452 85683 0 [Bacillus] selenitireducens species 1 9 Alicyclobacillaceae family 60 1 186823 7391 0 genus 26 Alicyclobacillus 2 0 29330 1854 1 1828 405212 0 1 Alicyclobacillus acidocaldarius species 3905 432330 0 1 Tumebacillus 35 genus 3 species Tumebacillus avium 1 0 2193 1903704 species Tumebacillus algifaecis 1 0 1214604 1677 1129704 1572 0 1 Kyrpidia genus 79 3 1 Kyrpidia sp. EA-1 species 703 2055160 0 33943 790 0 Kyrpidia tusciae species 1 0 9356 186820 1 20 family Listeriaceae 9 1 0 2755 1001 2 genus 1 Brochothrix 1 species Brochothrix thermosphacta 0 2756 1000 genus 87 Listeria 6 0 1637 8335 1 0 1010 1642 species Listeria innocua 1 species Listeria ivanovii 1 0 1711 1638 1 Listeria welshimeri species 1190 1643 0 1639 3399 0 1 Listeria monocytogenes species 0 1640 938 1 species Listeria seeligeri 4 family 15 Thermoactinomycetaceae 1 0 186824 1242 1164 1677050 0 1 Novibacillus 58 genus 2 species Novibacillus thermophilus 1 0 1106 1471761 genus Laceyella 1 0 292635 63 0 44170 90964 1 1585 family Staphylococcaceae 42 1 0 3712 69965 4 9 genus Macrococcus 0 1069 2619255 no rank 1 Macrococcus sp. IME1552 species 1 1069 1898474 0 1 species Macrococcus canis 0 1855823 1214 69966 1420 0 Macrococcus caseolyticus species 1 772 2005363 0 1 Auricoccucs 16 genus 2 1 Auricoccus indicus species 756 1849491 0 36666 1279 0 1 Staphylococcus 845 genus 33 1 species Staphylococcus agnetis 0 601 985762 species Staphylococcus stepanovicii 1 0 643214 1104 45972 1936 0 1 Staphylococcus pasteuri species 1294 792 0 1 Staphylococcus muscae species 0 1296 1024 1 species Staphylococcus sciuri species Staphylococcus condimenti 1 0 70255 1002 0 1286 1279 species Staphylococcus simulans 1 1 species Staphylococcus hominis 0 1081 1290 species Staphylococcus argenteus 1 0 985002 966 0 29384 864 1 species Staphylococcus kloosii Staphylococcus succinus species 1 817 61015 0 species Staphylococcus nepalensis 1 0 214473 1028 species Staphylococcus schleiferi 1 0 1295 1069 species Staphylococcus pseudintermedius 1 0 1058 283734 0 955 70258 species Staphylococcus piscifermentans 1 0 170573 616 1 species Staphylococcus pettenkoferi species Staphylococcus haemolyticus 1 0 1283 961 species Staphylococcus carnosus 1 0 1030 1281 Staphylococcus hyicus species 1 1284 697 0 1 Staphylococcus lugdunensis species 28035 1049 0 1 species Staphylococcus capitis 0 968 29388 species Staphylococcus lutrae 1 0 155085 643 1588 1282 0 Staphylococcus epidermidis species 1 0 1127 246432 1 species Staphylococcus equorum 0 897 91994 1 no rank 1 species Staphylococcus sp. AntiMn-1 0 897 1715860 711 1292 0 1 Staphylococcus warneri species 0 1338 29382 species Staphylococcus cohnii 1 1 Staphylococcus felis species 1142 46127 0 0 29385 875 1 species Staphylococcus saprophyticus 1280 3674 0 1 Staphylococcus aureus species 308354 1377 0 Staphylococcus simiae species 1 1 Staphylococcus xylosus species 1288 1552 0 Salinicoccus 12 genus 2 1435 45669 0 1 407035 1423 0 1 Salinicoccus halodurans species 6603 539002 0 no rank 9 0 539742 5040 no rank 7 1 0 5040 33986 7 118 genus Exiguobacterium Exiguobacterium antarcticum species 1 132920 746 0 4 no rank 0 3131 2644629 Exiguobacterium sp. MH3 species 1 1399115 592 0 1224749 873 0 1 Exiguobacterium sp. ZWU0009 species 0 888 360911 species Exiguobacterium sp. AT1b 1 1 species Exiguobacterium sp. U13-1 0 778 1849031 1 Exiguobacterium sibiricum species 332410 1045 0 no rank 2 539738 1563 0 0 1563 1378 1 2 genus Gemella 2 1 no rank 0 2624949 1561 0 1785995 1561 1 species Gemella sp. oral taxon 928 family 299 Paenibacillaceae 46 0 186822 104753 1 2 genus 2 Thermobacillus 1 0 76632 2723 0 2721 377615 1 species Thermobacillus composti 765 genus Paenibacillus 36 0 92021 44249 1 Paenibacillus graminis species 1 189425 2705 0 1 Paenibacillus xylanexedens species 1969 528191 0 189426 1649 0 Paenibacillus odorifer species 1 2688 1616788 0 Paenibacillus bovis species 1 0 1870820 2497 species Paenibacillus ihbetae 1 Paenibacillus yonginensis species 1 1462996 2306 0 Paenibacillus stellifer species 1 169760 3247 0 2044880 3008 0 1 species group species Paenibacillus riograndensis 1 0 3008 483937 species Paenibacillus sabinae 1 0 2302 365617 species Paenibacillus donghaensis 1 0 414771 3522 1603 162209 0 1 Paenibacillus naphthalenovorans species species Paenibacillus peoriae 1 0 59893 1657 0 172713 1680 species Paenibacillus kribbensis 1 13 no rank 0 185978 34161 1536775 1813 0 Paenibacillus sp. FSL H7-0737 species 1 324057 2766 0 1 Paenibacillus sp. JDR-2 species 0 2069255 1766 1 species Paenibacillus sp. lzh-N1 Paenibacillus sp. FSL P4-0081 species 1 1536769 4057 0 species Paenibacillus sp. FSL R5-0345 1 0 1736 1536770 Paenibacillus sp. FSL R5-0912 species 1 1536771 3973 0 0 3576 1536772 1 species Paenibacillus sp. FSL R7-0273 1 Paenibacillus sp. BIHB4019 species 1870819 1992 0 1536773 3716 0 1 Paenibacillus sp. FSL R7-0331 species Paenibacillus sp. 32O-W species 1 1695218 2016 0 1536774 3163 0 1 Paenibacillus sp. FSL H7-0357 species Paenibacillus sp. Y412MC10 species 1 2172 481743 0 0 1415 1566358 1 species Paenibacillus sp. IHBB 10380 species Paenibacillus borealis 1 0 160799 3680 Paenibacillus mucilaginosus species 1 61624 4107 0 1 Paenibacillus durus species 44251 3924 0 1871 1464 0 Paenibacillus larvae species 1 Paenibacillus beijingensis species 1 1974 1126833 0 1 Paenibacillus terrae species 1970 159743 0 1178515 1506 0 Paenibacillus swuensis species 1 1763538 1275 0 1 Paenibacillus crassostreae species 0 1406 5955 1 species Paenibacillus polymyxa no rank 3 3333 85151 0 genus 28 Aneurinibacillus 3 0 55079 3333 1 2642329 1387 0 1 no rank species Aneurinibacillus sp. XH2 1 0 1450761 1387 1 Aneurinibacillus soli species 1918 1500254 0 4 genus 43 Brevibacillus 1 0 55080 6377 1 species Brevibacillus formosus 0 54913 1429 2541 1393 0 Brevibacillus brevis species 1 0 1465 2364 species Brevibacillus laterosporus 1 369 family Bacillaceae 116 0 165057 186817 1 2 4 genus Parageobacillus 1 0 1150 1906945 0 1146 1426 species Parageobacillus thermoglucosidasius 1 175304 1291 0 1 genus 1 species Lentibacillus amyloliquefaciens 0 1472767 1291 29331 1376 0 genus 1 1376 1449 0 1 Amphibacillus xylanus species 58 4185 genus Bacillus 1 0 102652 1386 Bacillus endophyticus species 1 1967 135735 0 79883 1156 0 1 Bacillus horikoshii species 0 1404 3124 species Bacillus megaterium 1 561879 2319 0 1 Bacillus safensis species 0 86664 1381 species Bacillus flexus 1 19 no rank 14665 185979 0 1 Bacillus sp. FJAT-14266 species 881 1837130 0 species Bacillus sp. SJ-10 1 0 563169 683 0 1178 2026248 1 species Bacillus sp. 1s-1 species Bacillus sp. Pc3 1 0 567 1446792 0 185 1409 species Bacillus sp. (in: Bacteria) 1 1 species Bacillus sp. 275 0 574 1941347 1 Bacillus sp. WP8 species 1284 756828 0 1 species Bacillus sp. Lzh-5 0 175 2049935 2009331 504 0 Bacillus sp. MD-5 species 1 1 species Bacillus sp. SDLI1 0 752 1774743 species Bacillus sp. X1(2014) 1 0 1565991 1183 1330 98228 0 1 Bacillus sp. OxB-1 species 1 Bacillus sp. LM 4-2 species 1628753 239 0 484 1127744 0 1 Bacillus sp. JS species species Bacillus sp. BH072 1 0 248 1570330 1 species Bacillus sp. 1NLA3E 0 1776 666686 313 1574141 0 Bacillus sp. YP1 species 1 Bacillus sp. H15-1 species 1 1179 1856406 0 Bacillus sp. IHB B 7164 species 1 1827146 1130 0 1238 412384 0 1 Bacillus aryabhattai species 1 Bacillus coagulans species 3109 1398 0 1479 1178 0 Bacillus smithii species 1 0 1371 1471 species Bacillus methanolicus 1 1312 33932 0 1 Bacillus cohnii species Bacillus glycinifermentans species 1 1664069 1912 0 1 species Bacillus beveridgei 0 1249 632773 1269 1792192 0 species group 1 1 Bacillus altitudinis species 293387 1269 0 Bacillus weihaiensis species 1 1229 1547283 0 1 Bacillus infantis species 1333 324767 0 species Bacillus gibsonii 1 0 115 79881 Bacillus cellulosilyticus species 1 1113 1413 0 1408 4564 0 1 Bacillus pumilus species Bacillus xiamenensis species 1 828 1178537 0 0 19378 653685 species group 9 1 Bacillus vallismortis species 283 72361 0 1 species Bacillus subtilis 0 1423 7033 1 Bacillus atrophaeus species 1687 1452 0 species subgroup 3 0 5719 1938374 1 species Bacillus amyloliquefaciens 0 1390 2596 0 773 659243 1 species Bacillus siamensis 0 492670 2350 species Bacillus velezensis 1 0 1648923 1633 species Bacillus paralicheniformis 1 1665 1402 0 Bacillus licheniformis species 1 species Bacillus sonorensis 1 0 119858 1358 86661 32657 0 10 species group 0 1392 1151 species Bacillus anthracis 1 species Bacillus thuringiensis 1 0 1428 10229 1 species Bacillus bombysepticus 0 1017 658666 1405 4015 0 Bacillus mycoides species 1 1 species Bacillus cytotoxicus 0 1112 580165 3 no rank 2750818 3761 0 1892404 1042 0 Bacillus sp. ABP14 species 1 1 Bacillus sp. HBCD-sjtu species 1193 2053832 0 species Bacillus sp. FDAARGOS_235 1 0 1839798 1526 species Bacillus toyonensis 1 0 155322 1318 10054 1396 0 1 Bacillus cereus species 1 0 1055323 1398 2 genus 2 Aeribacillus 1 species Aeribacillus pallidus 0 1396 33936 3 Fictibacillus 13 genus 1 3623 1329200 0 1 species Fictibacillus arsenicus 0 1868 255247 0 1221500 1742 1 species Fictibacillus phosphorivorans 1 0 7209 84406 7 59 genus Virgibacillus 2 no rank 0 2227 2620237 1911587 1259 0 1 Virgibacillus sp. 6R species 1 species Virgibacillus sp. SK37 0 968 403957 0 1025 1473 1 species Virgibacillus pantothenticus species Virgibacillus necropolis 1 0 1351 163877 2017483 1180 0 Virgibacillus phasianinus species 1 species Virgibacillus halodenitrificans 1 0 1482 1367 genus 2 0 3195 2675230 Bacillus kochii species 1 1144 859143 0 665099 2051 0 Bacillus oceanisediminis species 1 5 genus 6718 2675234 0 species Bacillus clausii 1 0 79880 1862 Bacillus halodurans species 1 86665 990 0 1 species Bacillus lehensis 0 300825 962 species Bacillus krulwichiae 1 0 199441 1603 species Bacillus pseudofirmus 1 0 1301 79885 0 45667 2472 2 genus 1 species Halobacillus halophilus 0 1570 1230 1 Halobacillus mangrovi species 402384 1242 0 5 153 genus Lysinibacillus 1 0 8304 400634 0 1421 3859 species Lysinibacillus sphaericus 1 1416 28031 0 1 Lysinibacillus fusiformis species no rank 1 1481 2636778 0 species Lysinibacillus sp. YS11 1 0 1481 2072025 0 1395 1145276 1 species Lysinibacillus varians 1 genus 0 2084 182709 Oceanobacillus iheyensis species 1 182710 2084 0 150247 5911 0 1 Anoxybacillus genus 14 6 1 Anoxybacillus amylolyticus species 1012 294699 0 0 2335 2639704 2 no rank 1490057 1162 0 1 Anoxybacillus sp. B7M1 species 1490052 1173 0 Anoxybacillus sp. B2M1 species 1 Anoxybacillus gonensis species 1 198467 915 0 1635 33934 0 Anoxybacillus flavithermus species 1 1 0 459532 1386 2 genus 2 Terribacillus 1 Terribacillus aidingensis species 586416 1384 0 15 Geobacillus genus 781 1 129337 11628 0 1 species Geobacillus stearothermophilus 0 939 1422 Geobacillus genomosp. 3 species 1 928 1921421 0 3265 1505648 0 species group 4 654 33938 0 1 Geobacillus thermocatenulatus species 0 382 1462 1 species Geobacillus kaustophilus 1 Geobacillus thermoleovorans species 1535 33941 0 169283 694 0 1 Geobacillus lituanicus species 33940 1201 0 Geobacillus thermodenitrificans species 1 1 species Geobacillus subterraneus 0 846 129338 no rank 6 2642459 3668 0 Geobacillus sp. WCH70 species 1 1107 471223 0 0 581103 980 species Geobacillus sp. Y4.1MC1 1 691437 505 0 Geobacillus sp. C56-T3 species 1 species Geobacillus sp. GHH01 1 0 358 1233873 362 550542 0 Geobacillus sp. Y412MC52 species 1 1 Geobacillus sp. Y412MC61 species 356 544556 0 1 genus 0 351195 1071 1071 1230341 0 1 Salimicrobium jeotgali species 3220 2675229 0 genus 2 2075 1478 0 1 Bacillus simplex species 1 species Bacillus muralis 0 1145 264697 1 0 526524 45733 11 class 7 Erysipelotrichia 1 526525 45726 0 10 Erysipelotrichales order 35 1 45691 128827 0 9 Erysipelotrichaceae 161 family 3 Erysipelothrix 33 genus 1 3447 1647 0 1514105 1599 0 Erysipelothrix larvae species 1 1815 1648 0 1 Erysipelothrix rhusiopathiae species 2 genus 25 Turicibacter 1 0 191303 24839 0 24814 2638206 no rank 1 Turicibacter sp. H121 species 1 24814 1712675 0 no rank 1 0 544447 12447 1 species Erysipelotrichaceae bacterium I46 0 1834207 12447 0 4797 1729679 1 17 genus Faecalibaculum 2 4780 1702221 0 Faecalibaculum rodentium species 1 class 5 Limnochordia 5 0 1676648 1555 1 0 1676649 1550 1 order 39 Limnochordales 4 1 0 1511 1676650 3 28 family Limnochordaceae 2 23 genus Limnochorda 1 0 1483 1676651 0 1555112 1460 1 species Limnochorda pilosa 0 1342 84086 no rank 1 species endosymbiont 'TC1' of Trimyema compressum 1 0 243899 1342 1 1737404 31477 0 19 Tissierellia class 8 30432 1737405 0 1 Tissierellales 966 order 16 1 0 26874 1570339 12 5853 family Peptoniphilaceae 1 162289 2976 0 2 Peptoniphilus genus 14 no rank 1 0 2637196 2962 0 2962 1912856 species Peptoniphilus sp. ING2-D1G 1 3 Anaerococcus 16 genus 1 2798 165779 0 1 species Anaerococcus prevotii 0 1302 33034 0 1870984 1480 species Anaerococcus mediterraneensis 1 2 Parvimonas 19 genus 1 2176 543311 0 2157 33033 0 Parvimonas micra species 1 Finegoldia 10 genus 2 2940 150022 0 1 species Finegoldia magna 1 0 2930 1260 1 0 1161127 10131 2 genus 5 Murdochiella species Murdochiella vaginalis 1 0 10126 1852373 3 6 family Gottschalkiaceae 1 0 2592 2042895 Gottschalkia 5 genus 2 2586 1505664 0 1 0 2581 1556 1 species Gottschalkia acidurici 2 no rank 0 1737407 1037 2 genus 22 Ezakiella 1 0 1582879 1037 Ezakiella massiliensis species 1 1852374 1015 0 1 0 186801 12709073 224 class 441 Clostridia 1 0 6394 53433 12 5 order Halanaerobiales 0 2586 53434 1 5 family Halobacteroidaceae 5 1334 28186 0 1 Acetohalobium 1 genus 2 Acetohalobium arabaticum species 1 28187 1333 0 1 1247 42417 0 2 Halobacteroides 6 genus 42422 1241 0 Halobacteroides halobius species 1 Halanaerobiaceae 5 family 6 3803 972 0 1 0 1189 32636 1 1 genus Halothermothrix 2 Halothermothrix orenii species 1 1188 31909 0 5 genus Halanaerobium 3 0 2609 2330 1 656519 1247 0 1 Halanaerobium hydrogeniformans species species Halanaerobium praevalens 1 0 2331 1357 0 485256 1156 1 order 11 Natranaerobiales 3 485255 1145 0 2 family 2 22 genus Natranaerobius 1 0 1145 375928 0 1123 375929 1 species Natranaerobius thermophilus 1 0 12663415 186802 165 22016 order Clostridiales 41596 186807 0 1 Peptococcaceae 124 family 29 2 genus 15 Candidatus Desulforudis 1 0 471826 1248 1 species Candidatus Desulforudis audaxviator 0 1233 471827 1 3399 51514 0 2 Dehalobacterium 9 genus 0 51515 3390 species Dehalobacterium formicoaceticum 1 genus 1 0 2282740 2432 102134 2432 0 1 Desulfotomaculum gibsoniae species 8535 56112 0 1 Dehalobacter 57 genus 4 0 2635733 5775 no rank 2 1147129 2675 0 1 Dehalobacter sp. DCA species 3100 1131462 0 1 Dehalobacter sp. CF species 55583 2703 0 1 Dehalobacter restrictus species Desulfotomaculum genus 73 5 1562 6053 0 1 Desulfotomaculum ferrireducens species 1 1833852 1436 0 1564 2056 0 Desulfotomaculum ruminis species 1 1 species Desulfotomaculum reducens 0 1288 59610 Desulfotomaculum nigrificans species 1 1200 1565 0 5 Desulfitobacterium genus 191 1 36853 9351 0 233055 1700 0 1 Desulfitobacterium dichloroeliminans species Desulfitobacterium hafniense species 1 3454 49338 0 142877 1885 0 1 Desulfitobacterium metallireducens species Desulfitobacterium dehalogenans species 1 36854 2121 0 0 278993 1472 1 genus 1 Thermincola 2 1 species Thermincola potens 0 863643 1471 1981 51196 0 1 Syntrophobotulus 3 genus 2 1 species Syntrophobotulus glycolicus 0 1978 51197 1 genus 1738 2282742 0 0 1738 58138 species Desulfotomaculum acetoxidans 1 1 0 79206 5263 4 genus 54 Desulfosporosinus 0 1835 79209 1 species Desulfosporosinus meridiei 1 Desulfosporosinus orientis species 1563 1787 0 1 species Desulfosporosinus acidiphilus 0 885581 1587 0 6559839 186803 1 2605 family Lachnospiraceae 27 2 Herbinix 14 genus 1 16094 1663717 0 1679721 16080 0 Herbinix luporum species 1 4 Lachnoclostridium 881 genus 1 183171 1506553 0 no rank 1 0 2608895 55261 Lachnoclostridium sp. YL32 species 1 1834196 55261 0 0 104905 1871021 species Lachnoclostridium phocaeense 1 species Lachnoclostridium phytofermentans 1 0 22124 66219 genus 1 0 2569097 246326 246326 39488 0 1 [Eubacterium] hallii species 2 138 genus Anaerostipes 1 0 683621 207244 species Anaerostipes hadrus 1 0 649756 683483 0 40296 2719231 1 genus [Clostridium] saccharolyticum species 1 40296 84030 0 0 830 55378 1 genus 58 Butyrivibrio 3 1 species Butyrivibrio hungatei 0 27985 185008 0 27335 43305 1 species Butyrivibrio proteoclasticus 0 572511 167866 1 genus 213 Blautia 3 1 Blautia hansenii species 1322 106089 0 1 no rank 2648079 61564 0 1 Blautia sp. YL58 species 1796616 61564 0 0 28050 3606279 genus 1 species [Eubacterium] eligens 1 0 3606279 39485 no rank 2 186928 523347 0 489010 39491 0 1 [Eubacterium] rectale species 0 712991 34337 species Lachnospiraceae bacterium oral taxon 500 1 1 0 774148 841 2 62 genus Roseburia Roseburia hominis species 1 774086 301301 0 0 2039240 6299 1 genus 19 Anaerotignum 2 1 Anaerotignum propionicum species 28446 6280 0 1 genus 2719313 244692 0 208479 244692 0 1 [Clostridium] bolteae species 0 698776 9717 1 genus 134 Cellulosilyticum 2 species Cellulosilyticum lentocellum 1 0 9583 29360 Eubacteriaceae family 34 5 186806 26025 0 1 1 0 2524 33951 2 9 genus Acetobacterium 33952 2515 0 1 Acetobacterium woodii species 0 23467 1730 1 1637 genus Eubacterium 2 species Eubacterium limosum 1 0 21830 1736 36509 990719 0 1 Christensenellaceae 47 family 3 36462 990721 0 1 Christensenella 615 genus 2 1 species Christensenella massiliensis 0 35847 1805714 2304686 59547 0 family 12 3 genus 11025 2304692 0 0 1677857 2914 1 species Herbivorax saccincola species [Clostridium] clariflavum 1 0 4481 288965 1 Ruminiclostridium thermocellum species 3630 1515 0 genus 1 3816 2304693 0 [Clostridium] thermosuccinogenes species 1 3816 84032 0 2304691 2967 0 genus 1 0 1510 2967 1 species [Clostridium] stercorarium 2 6 genus Fastidiosipila 1 0 2487 236752 236753 2481 0 Fastidiosipila sanguinis species 1 0 7359 1508657 1 464 genus Ruminiclostridium 2 0 1521 6895 1 species [Clostridium] cellulolyticum 1 no rank 0 2305130 27816 27816 1834198 0 Ruminiclostridium sp. KB18 species 1 1 0 4077 1637257 2 17 genus Mageeibacillus 1 species Mageeibacillus indolicus 0 884684 4060 1 31984 2976 0 3 Heliobacteriaceae family 21 0 2697 2955 1 genus 50 Heliobacterium 2 0 2905 35701 species Heliobacterium modesticaldum 1 0 186804 109564 1 family 371 Peptostreptococcaceae 12 1 3119 1481960 0 2 Peptoclostridium 9 genus Peptoclostridium acidaminophilum species 1 1731 3110 0 2 302 genus Clostridioides 1 0 95367 1870884 species Clostridioides difficile 1 0 95065 1496 2 Acetoanaerobium 9 genus 1 2372 186831 0 Acetoanaerobium sticklandii species 1 1511 2363 0 0 1899 1411023 no rank 1 1899 2081703 0 Peptostreptococcaceae bacterium oral taxon 929 species 1 1 1849828 3427 0 2 Paeniclostridium genus 12 1505 3415 0 1 Paeniclostridium sordellii species 2 Filifactor 22 genus 1 3009 44259 0 1 Filifactor alocis species 143361 2987 0 3 Oscillospiraceae family 4 1 216572 25873 0 2 65 genus Oscillibacter 1 0 25869 459786 1 Oscillibacter valericigenes species 25804 351091 0 3 family 21 Symbiobacteriaceae 1 0 543349 3145 Symbiobacterium 42 genus 2 3124 2733 0 1 0 2734 3082 species Symbiobacterium thermophilum 1 1 541000 5371199 0 13 Ruminococcaceae family 472 1 no rank 0 552397 5505 29343 5505 0 1 [Clostridium] cellulosi species 64155 946234 0 1 Flavonifractor 120 genus 2 64035 292800 0 1 Flavonifractor plautii species 5 1890281 0 1 Herbivorax genus no rank 1 0 2305133 10679 Ruminococcaceae bacterium CPB6 species 1 10679 1572656 0 1 0 11389 253238 2 29 genus Ethanoligenens 253239 11360 0 1 Ethanoligenens harbinense species 3 162 genus Ruminococcus 1 0 124880 1263 1160721 105492 0 1 Ruminococcus bicirculans species 1 species Ruminococcus albus 0 1264 19226 2 genus 1180 Faecalibacterium 1 0 216851 5154114 1 species Faecalibacterium prausnitzii 0 5152934 853 1 31979 206163 0 41 Clostridiaceae family 704 genus 19 Alkaliphilus 3 0 114627 4432 1 1 species Alkaliphilus metalliredigens 0 208226 2186 Alkaliphilus oremlandii species 1 461876 2227 0 1 3906 49082 0 4 Candidatus Arthromitus 46 genus 3 no rank 2638829 3860 0 49118 1164 0 1 Candidatus Arthromitus sp. SFB-mouse species 1 Candidatus Arthromitus sp. SFB-rat-Yit species 1041504 1579 0 1117 1508644 0 1 Candidatus Arthromitus sp. SFB-mouse-NL species Mordavella genus 1 550 1981033 0 63 genus Geosporobacter 2 0 4355 390805 1 4292 1424294 0 1 Geosporobacter ferrireducens species Clostridium genus 1471 30 1485 192216 0 1 species Clostridium ljungdahlii 1 0 2835 1538 1 Clostridium aceticum species 84022 2152 0 0 4850 1216932 1 species Clostridium bornimense 0 169679 7257 1 species Clostridium saccharobutylicum 1 species Clostridium taeniosporum 0 394958 3953 1 species Clostridium argentinense 0 29341 3183 2 no rank 2614128 48985 0 43452 1042156 0 Clostridium sp. SY8519 species 1 1 Clostridium sp. BNL1100 species 755731 5533 0 1 Clostridium tyrobutyricum species 2462 1519 0 species Clostridium scatologenes 1 0 4148 1548 species Clostridium formicaceticum 1 0 2171 1497 species Clostridium beijerinckii 1 0 1520 7553 1 species Clostridium perfringens 0 1502 6140 0 1493 4818 species Clostridium cellulovorans 1 1 Clostridium carboxidivorans species 217159 4232 0 species Clostridium botulinum 1 0 20801 1491 1 species Clostridium novyi 0 2682 1542 2803 238834 0 1 Clostridium estertheticum species 1 Clostridium kluyveri species 1534 5409 0 Clostridium sporogenes species 1 3386 1509 0 species Clostridium tetani 1 0 4860 1513 Clostridium butyricum species 1 7442 1492 0 1 species Clostridium chauvoei 0 9971 46867 species Clostridium autoethanogenum 1 0 84023 2862 0 1501 6808 species Clostridium pasteurianum 1 0 2942 1494 species Clostridium cochlearium 1 0 1561 6382 species Clostridium baratii 1 species Clostridium saccharoperbutylacetonicum 1 0 6719 36745 Clostridium acetobutylicum species 1 1488 2939 0 0 1649 68298 1 5 family Syntrophomonadaceae 3 genus 1 129001 591 0 Syntrophothermus lipocalidus species 1 86170 591 0 1 genus 1053 862 0 0 863 1053 1 species Syntrophomonas wolfei 0 197314 538999 no rank 10 0 2717089 107986 1 genus 107986 2086584 0 1 Mordavella sp. Marseille-P3756 species 1 0 8241 543314 4 13 family Clostridiales Family XIII. Incertae Sedis 1 86331 3344 0 2 Mogibacterium genus 23 3321 114527 0 Mogibacterium diversum species 1 0 4884 143393 species [Eubacterium] sulci 1 3 Clostridiales Family XVII. Incertae Sedis 7 family 1 2050 539000 0 Thermaerobacter 18 genus 2 2043 73918 0 1 0 73919 2025 species Thermaerobacter marianensis 1 0 1392389 79037 1 genus 672 Intestinimonas 2 1 Intestinimonas butyriciproducens species 1297617 78365 0 68295 35243 0 1 Thermoanaerobacterales order 57 39 1 543372 1361 0 3 Thermoanaerobacterales Family IV. Incertae Sedis family 10 2 Mahella 6 genus 1 1351 252965 0 1345 252966 0 Mahella australiensis species 1 543371 18212 0 1 Thermoanaerobacterales Family III. Incertae Sedis family 40 13 9 genus 230 Caldicellulosiruptor 1 0 44000 13011 Caldicellulosiruptor owensensis species 1 1433 55205 0 1 Caldicellulosiruptor kronotskyensis species 413889 1715 0 species Caldicellulosiruptor lactoaceticus 1 0 1482 52766 0 31899 1646 1 species Caldicellulosiruptor bescii Caldicellulosiruptor saccharolyticus species 1 44001 1618 0 species Caldicellulosiruptor kristjanssonii 1 0 52765 1735 0 717609 1714 species Caldicellulosiruptor obsidiansis 1 1 Caldicellulosiruptor hydrothermalis species 413888 1438 0 0 28895 5161 1 genus 22 Thermoanaerobacterium 3 2172 29329 0 1 Thermoanaerobacterium xylanolyticum species 1 species Thermoanaerobacterium thermosaccharolyticum 0 2967 1517 0 15260 186814 1 38 family Thermoanaerobacteraceae 20 1 0 140458 892 2 genus 11 Thermacetogenium Thermacetogenium phaeum species 1 881 85874 0 Carboxydothermus 2 genus 2 916 129957 0 1 914 129958 0 1 Carboxydothermus hydrogenoformans species Caldanaerobacter genus 17 2 249529 1210 0 1 Caldanaerobacter subterraneus species 1 911092 1193 0 9 Thermoanaerobacter genus 335 1 1754 9839 0 0 2636821 2581 2 no rank 1 species Thermoanaerobacter sp. X514 0 1316 399726 573062 1265 0 Thermoanaerobacter sp. X513 species 1 29323 1271 0 Thermoanaerobacter brockii species 1 species Thermoanaerobacter kivui 1 0 2325 1026 108150 1000 0 1 Thermoanaerobacter italicus species 496866 1271 0 1 Thermoanaerobacter pseudethanolicus species 1 species Thermoanaerobacter wiegelii 0 1280 46354 Thermoanaerobacter mathranii species 1 583357 1075 0 0 2365 42857 no rank 4 Ammonifex genus 5 2 42837 904 0 1 species Ammonifex degensii 1 0 42838 899 Moorella genus 1 2 44260 1461 0 1 1460 1525 0 1 Moorella thermoacetica species family 2 353 227387 0 3 genus Thermodesulfobium 2 0 353 227388 1 350 184064 0 Thermodesulfobium narugense species 1 order 4 2424 2770089 0 0 1093 2770093 2 family 291988 1093 0 1 Thermosediminibacter genus 19 2 1074 291990 0 Thermosediminibacter oceani species 1 2 family 0 1331 2770092 0 1331 499228 1 5 genus Tepidanaerobacter 2 0 1326 499229 1 species Tepidanaerobacter acetatoxydans 648 Actinobacteria phylum 151 1 201174 733248 0 6545 class Actinobacteria 593 0 633763 1760 1 20 order 35 Micromonosporales 1 0 85008 17684 19 Micromonosporaceae family 270 1 28056 17649 0 4 genus 79 Plantactinospora 1 0 673534 4077 no rank 3 3998 2631981 0 species Plantactinospora sp. BB1 1 0 2071627 1358 species Plantactinospora sp. BC1 1 0 2108470 1425 1 species Plantactinospora sp. KBS50 0 2024580 1215 6 genus 132 Actinoplanes 1 0 1865 7748 0 1664 196914 species Actinoplanes friuliensis 1 no rank 3 4388 2626549 0 1 species Actinoplanes sp. SE50/110 0 134676 1293 0 1802 649831 species Actinoplanes sp. N902-109 1 1 Actinoplanes sp. SE50 species 2033844 1293 0 1564 1866 0 Actinoplanes missouriensis species 1 4 Micromonospora genus 67 1 1873 4060 0 1003110 1087 0 1 Verrucosispora maris species no rank 1 1495 2617518 0 648999 1495 0 Micromonospora sp. L5 species 1 0 47850 1411 1 species Micromonospora aurantiaca 0 84593 2 1 genus Verrucosispora 3 Salinispora genus 19 1 168694 1492 0 1 Salinispora tropica species 724 168695 0 749 168697 0 Salinispora arenicola species 1 161 Corynebacteriales 942 order 1 113591 85007 0 1 no rank 697024 463 0 1 genus 0 463 1847725 0 463 1528099 1 species Lawsonella clevelandensis 0 36924 1653 1 267 family Corynebacteriaceae 52 51 Corynebacterium genus 1027 1 1716 36657 0 909 191493 0 1 Corynebacterium sphenisci species species Corynebacterium camporealensis 1 0 644 161896 108486 1038 0 Corynebacterium falsenii species 1 429 1652495 0 1 Corynebacterium crudilactis species 0 43770 1675 1 species Corynebacterium striatum 2 no rank 0 1303 2624378 1 Corynebacterium sp. NML98-0116 species 509 702967 0 794 1487956 0 Corynebacterium sp. ATCC 6931 species 1 0 161895 523 species Corynebacterium phocae 1 0 1223514 876 1 species Corynebacterium humireducens 1 species Corynebacterium terpenotabidum 0 89154 522 1 species Corynebacterium ammoniagenes 0 1697 446 1 species Corynebacterium singulare 0 161899 639 Corynebacterium atypicum species 1 191610 512 0 1 Corynebacterium glutamicum species 1718 1047 0 Corynebacterium simulans species 1 146827 1176 0 1 species Corynebacterium jeikeium 0 38289 1563 1 species Corynebacterium uterequi 0 1072256 614 1 Corynebacterium argentoratense species 612 42817 0 0 1502 38305 1 species Corynebacterium vitaeruminis Corynebacterium aurimucosum species 1 169292 662 0 571915 489 0 1 Corynebacterium mustelae species 751 136857 0 Corynebacterium testudinoris species 1 0 534 1408191 1 species Corynebacterium deserti species Corynebacterium resistens 1 0 540 258224 Corynebacterium callunae species 1 1721 628 0 0 35755 298 1 species Corynebacterium kutscheri 0 457 92706 1 species [Brevibacterium] flavum species Corynebacterium variabile 1 0 1727 857 1 Corynebacterium glaucum species 609 187491 0 Corynebacterium pseudotuberculosis species 1 1719 569 0 0 203263 760 species Corynebacterium aquilae 1 0 761 43771 1 species Corynebacterium urealyticum 1 Corynebacterium efficiens species 152794 935 0 1 species Corynebacterium stationis 0 1705 598 0 1121358 679 1 species Corynebacterium doosanense 0 1231000 618 1 species Corynebacterium lactis 555 160386 0 Corynebacterium casei species 1 species Corynebacterium frankenforstense 1 0 1230998 868 0 385 1050174 species Corynebacterium epidermidicanis 1 782 1717 0 1 Corynebacterium diphtheriae species 1404244 522 0 Corynebacterium glyciniphilum species 1 1 Corynebacterium ulcerans species 65058 713 0 Corynebacterium flavescens species 1 28028 564 0 450 35757 0 Corynebacterium cystitidis species 1 161879 290 0 1 Corynebacterium kroppenstedtii species 0 923 349751 species Corynebacterium marinum 1 0 633 575200 1 species Corynebacterium maris species Corynebacterium ureicelerivorans 1 0 588 401472 1 species Corynebacterium imitans 0 156978 722 0 860 225326 1 species Corynebacterium halotolerans 31 family 241 Nocardiaceae 1 0 85025 27321 1 1827 16789 0 23 Rhodococcus genus 673 1 Rhodococcus ruber species 1830 917 0 1 Rhodococcus pyridinivorans species 677 103816 0 883 132919 0 Rhodococcus jostii species 1 1 Rhodococcus qingshengii species 334542 495 0 species Rhodococcus rhodochrous 1 0 1829 522 1 species Rhodococcus opacus 0 37919 1951 0 990 191292 1 species Rhodococcus aetherivorans 0 791 43767 1 species Rhodococcus hoagii 0 1828 742 1 species Rhodococcus fascians no rank 12 192944 7234 0 species Rhodococcus sp. MTM3W5.2 1 0 660 1805827 611 1727214 0 1 Rhodococcus sp. H-CA8f species 1570939 525 0 1 Rhodococcus sp. 2G species Rhodococcus sp. BH4 species 1 1807790 471 0 Rhodococcus sp. PBTS 1 species 1 1653478 577 0 Rhodococcus sp. PBTS 2 species 1 1653479 609 0 0 903 1033922 1 species Rhodococcus sp. WB1 817 1564114 0 1 Rhodococcus sp. B7740 species 679318 450 0 Rhodococcus sp. WMMA185 species 1 629 935199 0 Rhodococcus sp. p52 species 1 1 Rhodococcus sp. YL-1 species 476 1045808 0 Rhodococcus sp. 008 species 1 506 1723645 0 1833 914 0 Rhodococcus erythropolis species 1 Nocardia 172 genus 7 10291 1817 0 1 0 455432 1321 species Nocardia terpenica 1 37332 1753 0 1 Nocardia seriolae species 1 species Nocardia farcinica 0 1265 37329 0 135487 2305 1 species Nocardia cyriacigeorgica Nocardia nova species 1 1194 37330 0 0 37326 2281 1 species Nocardia brasiliensis Segniliparaceae 4 family 3 483 316606 0 1 3 genus Segniliparus 2 0 479 286801 1 Segniliparus rotundus species 1 286802 476 0 150 family Mycobacteriaceae 56 0 39554 1762 1 505 697025 0 1 genus 639313 505 0 1 Hoyosella subflava species 13 genus 11875 1866885 0 Mycobacterium vanbaalenii species 1 110539 779 0 species Mycobacterium smegmatis 1 0 1772 1120 1 Mycobacterium neoaurum species 1795 739 0 0 1025 1810 1 species Mycobacterium vaccae 0 1804 959 species Mycobacterium gilvum 1 0 1771 1002 1 species Mycobacterium phlei 846 1800 0 Mycobacterium chubuense species 1 1123 134601 0 1 Mycobacterium goodii species 0 1243 1791 species Mycobacterium aurum 1 758802 933 0 Mycobacterium litorale species 1 1 species Mycobacterium fortuitum 0 765 1766 1 species Mycobacterium rhodesiae 0 658 36814 1797 683 0 Mycobacterium thermoresistibile species 1 1 0 1763 21943 34 genus 1629 Mycobacterium 712 1781 0 Mycobacterium marinum species 1 0 29311 470 1 species Mycobacterium haemophilum 0 482462 1042 1 species Mycobacterium dioxanotrophicus 4 species group 77643 1703 0 1 species Mycobacterium canettii 0 78331 418 453 species Mycobacterium tuberculosis 3 0 1285 1773 1 0 419 1765 biotype Mycobacterium bovis 1 1 Mycobacterium africanum biotype 413 33894 0 1 Mycobacterium liflandii species 261524 550 0 1769 334 0 1 Mycobacterium leprae species 13 no rank 9033 2642494 0 1 species Mycobacterium sp. WY10 0 814 1920667 1 Mycobacterium sp. JLS species 164757 569 0 1 species Mycobacterium sp. KMS 0 515 189918 1 Mycobacterium sp. PYR15 species 2051552 832 0 1879023 1233 0 Mycobacterium sp. djl-10 species 1 495 164756 0 Mycobacterium sp. MCS species 1 1570328 739 0 1 Mycobacterium sp. NRRL B-3805 species 1 species Mycobacterium sp. YC-RL4 0 1682113 945 1 species Mycobacterium sp. QIA-37 0 646 1561223 Mycobacterium sp. VKM Ac-1817D species 1 1273687 730 0 1 Mycobacterium sp. EPa45 species 1545728 650 0 0 675 212767 species Mycobacterium sp. JS623 1 1 Mycobacterium sp. MOTT36Y species 1168287 190 0 120793 4390 0 8 species group 1 1767 1233 0 4 Mycobacterium intracellulare species 291 Mycobacterium yongonense subspecies 1 225 1203599 0 35617 211 0 Mycobacterium indicus pranii subspecies 1 222805 506 0 1 Mycobacterium chimaera subspecies Mycobacterium colombiense species 1 950 339268 0 1 species Mycobacterium avium 0 1764 1410 1 Mycobacterium marseillense species 701042 620 0 species Mycobacterium paraintracellulare 1 0 177 1138383 1 species Mycobacterium ulcerans 0 679 1809 0 2249310 551 species group 1 1 species Mycobacterium shigaense 0 551 722731 1 species Mycobacterium kansasii 0 850 1768 genus 5 3796 670516 0 species Mycobacterium stephanolepidis 1 0 691 1520670 1 species Mycobacterium abscessus 0 36809 1321 563 1578165 0 1 Mycobacterium saopaulense species 0 83262 632 species Mycobacterium immunogenum 1 species Mycobacterium chelonae 1 0 1774 589 genus 2 0 1285 1073531 0 1788 598 species Mycobacterium terrae 1 1 Mycobacterium sinense species 875328 687 0 4 family 11 Dietziaceae 1 0 85029 1072 Dietzia 7 genus 3 1061 37914 0 1 460 499555 0 1 Dietzia timorensis species no rank 1 594 2617939 0 0 594 712270 1 species Dietzia sp. oral taxon 368 9 Gordoniaceae 60 family 1 5184 85026 0 8 99 genus Gordonia 1 0 5124 2053 1 Gordonia bronchialis species 592 2054 0 0 2055 904 species Gordonia terrae 1 Gordonia polyisoprenivorans species 1 84595 728 0 1 Gordonia phthalatica species 1136941 640 0 0 2657482 1572 no rank 2 0 337191 858 species Gordonia sp. KTR9 1 1 Gordonia sp. YC-JH1 species 714 2059875 0 1 Gordonia iterans species 589 1004901 0 1 85028 1648 0 4 Tsukamurellaceae family 23 Tsukamurella 20 genus 3 1625 2060 0 1 0 57704 924 species Tsukamurella tyrosinosolvens 1 2061 681 0 Tsukamurella paurometabola species 1 1 0 85009 21959 33 order 101 Propionibacteriales 13 Nocardioidaceae 180 family 1 7007 85015 0 2 27 genus Kribbella 1 0 1204 182639 1 Kribbella flavida species 1177 182640 0 Pimelobacter genus 13 2 2044 1093 0 1 1 Pimelobacter simplex species 1080 2045 0 genus 63 Nocardioides 4 0 1839 2838 1 species Nocardioides sp. 78 1 0 800 2045452 0 450734 967 species Nocardioides dokdonensis 1 1008 2615069 0 no rank 1 0 196162 1008 species Nocardioides sp. JS614 1 2040 717 0 1 Aeromicrobium genus 12 2 1 Aeromicrobium erythreum species 705 2041 0 1 0 116071 975 2 genus 3 Micropruina 972 75385 0 Micropruina glycogenica species 1 19 Propionibacteriaceae 186 family 1 14851 31957 0 Cutibacterium 27 genus 4 2522 1912216 0 1 0 682 1747 1 species Cutibacterium acnes Cutibacterium granulosum species 1 599 33011 0 0 1214 33010 species Cutibacterium avidum 1 2 9 genus Acidipropionibacterium 1 0 1477 1912215 1468 1748 0 Acidipropionibacterium acidipropionici species 1 1986 203133 0 1 genus 1986 2633994 0 1 no rank 0 1871034 1986 1 species Propionimicrobium sp. Marseille-P3275 Propionibacterium 36 genus 3 2656 1743 0 1 2608905 458 0 1 no rank 0 458 671223 1 species Propionibacterium sp. oral taxon 193 species Propionibacterium freudenreichii 1 0 1744 2162 0 2801844 900 1 genus 1 Pseudopropionibacterium propionicum species 1750 900 0 5 Tessaracoccus 57 genus 1 4366 72763 0 1 species Tessaracoccus aquimaris 0 1332264 1382 951 399497 0 Tessaracoccus flavescens species 1 Tessaracoccus flavus species 1 1610493 812 0 1 no rank 0 1164 2635419 0 1164 1909732 species Tessaracoccus sp. T2.5-30 1 Microlunatus 9 genus 2 758 29404 0 1 1 species Microlunatus phosphovorus 0 29405 749 0 52018 210 1 no rank Actinobacteria bacterium IMCC26256 species 1 210 1650658 0 order 3 Nakamurellales 4 0 1643684 1496 1 Nakamurellaceae 25 family 3 1493 85031 0 1 2 genus 13 Nakamurella 1 0 53460 1468 0 1455 53461 1 species Nakamurella multipartita order 15 Frankiales 7 0 85013 4338 1 1 0 74712 4323 6 family 78 Frankiaceae Frankia genus 50 5 1854 4245 0 1 1 Frankia alni species 1859 952 0 2632575 1133 0 no rank 1 species Frankia sp. EAN1pec 1 0 1133 298653 106370 628 0 Frankia casuarinae species 1 species Frankia inefficax 1 0 298654 1482 622452 1120 0 3 order 3 Kineosporiaceae family 30 1 83778 1120 0 2 Kineococcus 6 genus 1 1090 33981 0 131568 1084 0 Kineococcus radiotolerans species 1 1 2119 414714 0 4 Catenulisporales 3 order 1 0 414877 2116 3 family 25 Catenulisporaceae 1 0 2091 414878 2 19 genus Catenulispora 0 2072 304895 species Catenulispora acidiphila 1 Streptosporangiales order 65 16 85012 12067 0 1 5 Streptosporangiaceae family 77 1 2004 4954 0 2 31 genus Streptosporangium 1 0 2147 2000 0 2001 2116 1 species Streptosporangium roseum 2 Nonomuraea 18 genus 1 2730 83681 0 1 no rank 2593643 2712 0 0 2712 1909395 1 species Nonomuraea sp. ATCC 55076 7 family 94 Nocardiopsaceae 1 0 83676 4980 3 genus Thermobifida 2 0 825 83677 1 1 species Thermobifida fusca 0 2021 822 1 2013 4061 0 4 Nocardiopsis genus 107 0 2014 1658 species Nocardiopsis dassonvillei 1 species Nocardiopsis gilva 1 0 1290 280236 0 53437 1006 species Nocardiopsis alba 1 3 Thermomonosporaceae family 26 1 2012 2068 0 2042 2019 0 1 Thermomonospora 28 genus 2 Thermomonospora curvata species 1 2020 2014 0 99 order Pseudonocardiales 39 0 35539 85010 1 38 532 family Pseudonocardiaceae 1 0 35440 2070 1835 1658 0 1 Saccharopolyspora genus 5 2 1836 1653 0 1 Saccharopolyspora erythraea species 0 142577 799 genus 1 0 530584 799 1 species Prauserella marina Alloactinosynnema genus 9 2 674734 1027 0 1 no rank 1 0 2636053 1018 0 1018 1653480 1 species Alloactinosynnema sp. L-07 1847 7494 0 1 Pseudonocardia genus 160 8 6 no rank 2619320 6162 0 1 Pseudonocardia sp. EC080619-01 species 1131 1096856 0 1 species Pseudonocardia sp. EC080625-04 0 1096868 1018 445576 979 0 Pseudonocardia sp. AL041005-10 species 1 Pseudonocardia sp. HH130630-07 species 1 953 1690815 0 1688404 1149 0 1 Pseudonocardia sp. EC080610-09 species 0 932 1641402 species Pseudonocardia sp. HH130629-09 1 1 species Pseudonocardia dioxanivorans 0 240495 1172 1 0 8495 1813 7 113 genus Amycolatopsis Amycolatopsis japonica species 1 1112 208439 0 species Amycolatopsis methanolica 1 0 1814 1175 2 no rank 0 2618356 2261 1 species Amycolatopsis sp. BJA-103 0 1911175 1112 0 1149 1896961 species Amycolatopsis sp. AA4 1 0 33910 1695 1 species Amycolatopsis mediterranei 0 31958 2139 1 species Amycolatopsis orientalis 1 0 1835 43356 2 11 genus Kutzneria 0 43357 1824 species Kutzneria albida 1 genus 1 0 1466 2029 Kibdelosporangium phytohabitans species 1 1466 860235 0 1 2071 1496 0 2 Saccharothrix genus 9 103731 1487 0 Saccharothrix espanaensis species 1 genus 1 0 678 1851 1 species Saccharomonospora viridis 0 1852 678 14 genus Lentzea 2 0 1558 165301 1 0 1586287 1544 1 species Lentzea guizhouensis Actinoalloteichus genus 75 6 65496 5179 0 1 0 1470176 1042 1 species Actinoalloteichus hoggarensis 0 1612552 1142 species Actinoalloteichus sp. ADI127-7 1 2 no rank 0 1999 2644606 1612551 1134 0 Actinoalloteichus sp. GBA129-24 species 1 1 species Actinoalloteichus sp. AHMU CJ021 0 865 2072503 340345 921 0 Actinoalloteichus hymeniacidonis species 1 0 40566 3223 1 genus 75 Actinosynnema 3 42197 1688 0 1 Actinosynnema pretiosum species 0 1460 40567 1 species Actinosynnema mirum 8 Geodermatophilales 11 order 1 3449 1643682 0 0 85030 3438 1 family 106 Geodermatophilaceae 7 Blastococcus genus 8 2 38501 900 0 1 1 species Blastococcus saxobsidens 0 138336 892 1 0 1272 88138 2 16 genus Modestobacter 1256 477641 0 Modestobacter marinus species 1 2 Geodermatophilus 21 genus 1 1160 1860 0 0 1861 1139 species Geodermatophilus obscurus 1 Micrococcales order 756 146 85006 87183 0 1 1 0 145357 2425 7 family 49 Dermacoccaceae 2 Luteipulveratus genus 15 1 745364 776 0 761 571913 0 1 Luteipulveratus mongoliensis species 2 Dermacoccus 23 genus 1 796 57495 0 0 1274 773 1 species Dermacoccus nishinomiyaensis 1 804 57499 0 2 Kytococcus 16 genus Kytococcus sedentarius species 1 1276 788 0 0 511 85018 1 6 family Dermatophilaceae 3 0 505 1862 1 5 genus Dermatophilus 2 0 1863 500 species Dermatophilus congolensis 1 no rank 1 0 142 577468 0 142 2038 1 genus 1 species Tropheryma whipplei 0 2039 142 85023 24333 0 1 Microbacteriaceae family 379 48 1 0 833 33886 3 7 genus Rathayibacter 1 Rathayibacter tritici species 33888 511 0 315 145458 0 Rathayibacter toxicus species 1 1 695 1759331 0 2 Cnuibacter 2 genus Cnuibacter physcomitrellae species 1 693 1619308 0 110932 1602 0 1 Leifsonia genus 15 2 1575 1587 0 Leifsonia xyli species 1 0 849 33877 1 7 genus Agromyces 2 1 Agromyces aureus species 453304 842 0 2 Microterricola 6 genus 1 860 518733 0 species Microterricola viridarii 1 0 412690 854 3 no rank 0 1655488 606 1655489 606 0 3 clade 1 0 529883 606 3 genus 2 Rhodoluna Candidatus Rhodoluna planktonica species 1 535712 350 0 1 Rhodoluna lacicola species 254 529884 0 1573 3218 0 1 Clavibacter genus 173 6 Clavibacter michiganensis 651 species 5 3045 28447 0 1 Clavibacter insidiosus subspecies 1 33014 623 0 0 31964 718 1 subspecies Clavibacter sepedonicus 0 531 31963 subspecies Clavibacter nebraskensis 1 1 Clavibacter capsici subspecies 1874630 522 0 1 genus 0 259 1434032 0 259 1159327 species Pontimonas salivibrio 1 genus 1 0 337004 550 0 279828 550 1 species Microcella alkaliphila 4 Curtobacterium 95 genus 1 2246 2034 0 0 257496 1389 2 no rank 0 828 1561023 1 species Curtobacterium sp. MR_MD2014 Curtobacterium sp. BH-2-1-1 species 1 1905847 561 0 0 762 69373 species Curtobacterium pusillum 1 1 0 9122 33882 14 218 genus Microbacterium 0 2609290 5386 8 no rank 1 species Microbacterium sp. BH-3-3-3 0 1906742 756 species Microbacterium sp. TPU 3598 1 0 1938334 607 1 species Microbacterium sp. XT11 0 718 367477 1916917 507 0 1 Microbacterium sp. 1.5R species 1 Microbacterium sp. str. 'China' species 807 2103230 0 0 824 1795053 species Microbacterium sp. PAMC 28756 1 Microbacterium sp. No. 7 species 1 695 1714373 0 1696072 472 0 Microbacterium sp. CGR1 species 1 species Microbacterium hominis 1 0 916 162426 0 514 2033 species Microbacterium testaceum 1 1 Microbacterium chocolatum species 84292 459 0 Microbacterium paludicola species 1 300019 837 0 792 36805 0 Microbacterium aurum species 1 2 Frondihabitans 2 genus 1 634 447237 0 1 no rank 632 2626248 0 1 Frondihabitans sp. PAMC 28766 species 1795630 632 0 296 1705353 0 1 Aurantimicrobium 4 genus 2 708131 292 0 1 Aurantimicrobium minutum species 2184 69578 0 1 Cryobacterium 35 genus 3 1 species Cryobacterium arcticum 0 1103 670052 1 no rank 2649013 1046 0 1 species Cryobacterium sp. LW097 0 1046 1978566 0 894 145360 1 15 family Sanguibacteraceae 3 0 60919 879 1 genus 13 Sanguibacter 2 species Sanguibacter keddieii 1 0 866 60920 11 Dermabacteraceae family 47 1 85020 6025 0 0 5045 43668 1 114 genus Brachybacterium 6 0 904 2017485 species Brachybacterium sp. VR2415 1 1 species Brachybacterium sp. VM2412 0 1000 2017484 no rank 1 0 2623841 868 species Brachybacterium sp. P6-10-X1 1 0 1903186 868 0 1067 43669 1 species Brachybacterium faecium species Brachybacterium ginsengisoli 1 0 1331682 1092 1 0 472568 339 2 genus 2 Devriesea species Devriesea agamarum 1 0 337 472569 Dermabacter genus 2 2 36739 594 0 1 Dermabacter vaginalis species 1 592 1630135 0 9 family 44 Intrasporangiaceae 1 0 85021 3508 Intrasporangium 21 genus 2 578 53357 0 1 53358 557 0 Intrasporangium calvum species 1 2 Serinicoccus 14 genus 1 1075 265976 0 1 species Serinicoccus sp. JLT9 0 1758689 1061 1 0 53457 643 2 genus 22 Janibacter 0 621 857417 species Janibacter indicus 1 1 0 267408 1168 2 genus 33 Arsenicicoccus 1 no rank 2663846 1135 0 0 1658671 1135 1 species Arsenicicoccus sp. oral taxon 190 1 85017 4323 0 9 Promicromonosporaceae family 124 Xylanimonas 17 genus 2 1144 186188 0 1 0 1127 186189 species Xylanimonas cellulosilytica 1 Isoptericola genus 49 3 254250 1515 0 1 0 139208 674 1 species Isoptericola variabilis 0 372663 792 species Isoptericola dokdonensis 1 1 157920 1540 0 3 Cellulosimicrobium genus 16 1 Cellulosimicrobium cellulans species 825 1710 0 2624466 699 0 no rank 1 1 species Cellulosimicrobium sp. TH-20 0 699 1980001 family 50 Brevibacteriaceae 3 0 85019 1397 1 1 0 1696 1347 2 genus 25 Brevibacterium 0 1322 1703 species Brevibacterium linens 1 3 Beutenbergiaceae 2 family 1 731 125316 0 0 729 84756 1 20 genus Beutenbergia 2 1 species Beutenbergia cavernae 0 709 84757 1 0 1268 38977 40 family 1777 Micrococcaceae 0 2078575 445 genus 1 1 Arthrobacter sp. IHBB 11108 species 1618207 445 0 0 2535 57493 1 56 genus Kocuria 4 Kocuria flava species 1 968 446860 0 893 72000 0 Kocuria rhizophila species 1 species Kocuria palustris 1 0 71999 618 Renibacterium 1 genus 2 279 1645 0 1 0 1646 278 species Renibacterium salmoninarum 1 1 0 3188 1742993 4 54 genus Pseudarthrobacter 0 121292 1048 1 species Pseudarthrobacter sulfonivorans 0 85085 1110 species Pseudarthrobacter chlorophenolicus 1 Pseudarthrobacter phenanthrenivorans species 1 361575 976 0 1868332 422 0 1 Neomicrococcus genus 12 2 0 556325 410 species Neomicrococcus aestuarii 1 1 0 11870 32207 3 7 genus Rothia 1 species Rothia mucilaginosa 0 11210 43675 0 653 2047 1 species Rothia dentocariosa Glutamicibacter 11 genus 2 1436 1742989 0 1 Glutamicibacter arilaitensis species 1 1425 256701 0 2 6 genus Sinomonas 1 0 927 596707 0 37927 921 1 species Sinomonas atrocyanea Paenarthrobacter genus 1 2 1742992 836 0 1 0 43663 835 1 species Paenarthrobacter aurescens 1269 945 0 1 Micrococcus genus 21 2 0 1270 924 1 species Micrococcus luteus 1663 14317 0 1 Arthrobacter genus 291 15 0 235627 11263 no rank 12 0 1118963 700 1 species Arthrobacter sp. Rue61a 1 Arthrobacter sp. ATCC 21022 species 590 1771959 0 species Arthrobacter sp. YC-RL1 1 0 1652545 1214 1 Arthrobacter sp. PAMC 25486 species 1494608 927 0 1849032 1108 0 Arthrobacter sp. U41 species 1 species Arthrobacter sp. FB24 1 0 962 290399 1334 1690248 0 Arthrobacter sp. LS16 species 1 962 1357915 0 1 Arthrobacter sp. QXT-31 species Arthrobacter sp. YN species 1 863 2020486 0 0 1704044 962 species Arthrobacter sp. ERGS1:01 1 1 species Arthrobacter sp. ZXY-2 0 724 1806905 0 917 2079227 species Arthrobacter sp. PGP41 1 1 Arthrobacter alpinus species 656366 1584 0 Arthrobacter crystallopoietes species 1 1179 37928 0 328 85022 0 2 family Jonesia genus 8 2 43673 328 0 1 0 43674 320 1 species Jonesia denitrificans 6 Cellulomonadaceae 34 family 1 2833 85016 0 2799 1707 0 1 Cellulomonas 50 genus 5 527 2620175 0 no rank 1 0 527 2003551 1 species Cellulomonas sp. PSBB021 species Cellulomonas fimi 1 0 1708 813 0 11 503 species Cellulomonas gilvus 1 species Cellulomonas flavigena 1 0 906 1711 order 21 Candidatus Nanopelagicales 11 0 2039638 3230 1 2162846 3209 0 10 family 3 genus 0 712 2039639 1 species Candidatus Nanopelagicus abundans 0 409 1884916 146 1884634 0 Candidatus Nanopelagicus limnes species 1 1884915 157 0 Candidatus Nanopelagicus hibericus species 1 1 0 622681 2497 7 genus 25 Candidatus Planktophila 1 species Candidatus Planktophila limnetica 0 192 573600 Candidatus Planktophila lacus species 1 1884913 486 0 Candidatus Planktophila vernalis species 1 336 1884907 0 species Candidatus Planktophila dulcis 1 0 578 1884914 0 558 1884905 species Candidatus Planktophila versatilis 1 0 1884904 322 1 species Candidatus Planktophila sulfonica 759 1643818 0 2 no rank 0 147067 759 1 genus 9 Thermobispora 2 0 750 2006 1 species Thermobispora bispora 20 Actinomycetales 17 order 1 20128 2037 0 0 2049 20111 1 family 5438 Actinomycetaceae 19 1 0 1069494 1664 2 genus 24 Trueperella species Trueperella pyogenes 1 0 1661 1640 889 2529408 0 1 genus species Actinomyces meyeri 1 0 52773 889 0 747 28263 1 1 genus Arcanobacterium 2 1 Arcanobacterium haemolyticum species 746 28264 0 1 2050 2908 0 2 Mobiluncus genus 204 1 Mobiluncus curtisii species 2704 2051 0 0 1653174 558 1 genus 3 Actinotignum 2 59505 555 0 Actinotignum schaalii species 1 9 genus 201 Actinomyces 1 0 1654 7907 species Actinomyces gaoshouyii 1 0 1960083 676 species Actinomyces pacaensis 1 0 1852377 1260 0 1247 111015 species Actinomyces radicidentis 1 0 426 1912795 1 species Actinomyces sp. VUL4_3 544580 968 0 Actinomyces oris species 1 0 3129 2609248 no rank 3 species Actinomyces sp. Chiba101 1 0 1851395 818 1177 712122 0 1 Actinomyces sp. oral taxon 414 species 0 1134 2081702 species Actinomyces sp. oral taxon 897 1 876 622450 0 order 3 1 0 876 622451 3 22 family Actinopolysporaceae Actinopolyspora 10 genus 2 854 1849 0 1 1 species Actinopolyspora erythraea 0 844 414996 0 102146 85011 1 223 order Streptomycetales 82 679 family Streptomycetaceae 81 0 101923 2062 1 1883 95016 0 1 Streptomyces genus 3321 75 0 1131 1901 species Streptomyces clavuligerus 1 24 no rank 0 2593676 27433 species Streptomyces sp. TN58 1 0 234612 1036 0 1837283 835 species Streptomyces sp. S8 1 1 species Streptomyces sp. CMB-StM0423 0 1331 2059884 Streptomyces sp. Mg1 species 1 1185 465541 0 1580 1495638 0 Streptomyces sp. M56 species 1 0 1257 1972846 species Streptomyces sp. Sge12 1 1 Streptomyces sp. SirexAA-E species 772 862751 0 1 Streptomyces sp. fd1-xmd species 1098 1812480 0 Streptomyces sp. CFMR 7 species 1 857 1649184 0 0 1661694 1216 species Streptomyces sp. Tue 6075 1 Streptomyces sp. FR-008 species 1 206662 1269 0 1 species Streptomyces sp. RTd22 0 1510 1841249 1 species Streptomyces sp. 4F 0 1122 1751294 1059 1961713 0 1 Streptomyces sp. MOE7 species 0 1725411 1247 species Streptomyces sp. CdTB01 1 Streptomyces sp. WAC00288 species 1 2094021 928 0 1192 1964449 0 Streptomyces sp. 3211 species 1 1275 444103 0 1 Streptomyces sp. CNQ-509 species Streptomyces sp. PAMC 26508 species 1 1265601 1007 0 1 species Streptomyces sp. CLI2509 0 1984801 812 species Streptomyces sp. SAT1 1 0 1141 1849967 0 1187 2135430 1 species Streptomyces sp. P3 1561022 1114 0 1 Streptomyces sp. CCM_MD2014 species 1262452 1403 0 1 Streptomyces sp. 769 species 1366 29303 0 Streptomyces cattleya species 1 0 1107 38300 species Streptomyces pristinaespiralis 1 1 Streptomyces pactum species 68249 2232 0 species Streptomyces noursei 1 0 1102 1971 1 Streptomyces alfalfae species 1219 1642299 0 978 42684 0 Streptomyces collinus species 1 1 Streptomyces griseochromogenes species 1040 68214 0 146923 1155 0 1 Streptomyces parvulus species 1926 1163 0 Streptomyces reticuli species 1 0 952 285473 1 species Streptomyces rubrolavendulae 1 species Streptomyces lavendulae 0 1914 1094 2 species group 0 1477431 2334 Streptomyces sampsonii species 1 1240 42239 0 0 1094 1902 species Streptomyces coelicolor 1 Streptomyces vietnamensis species 1 362257 1348 0 Streptomyces leeuwenhoekii species 1 1437453 1137 0 1312 68570 0 Streptomyces albulus species 1 0 1950 1023 1 species Streptomyces peucetius Streptomyces ambofaciens species 1 1889 938 0 species Streptomyces gilvosporeus 1 0 553510 1072 1 species Streptomyces pratensis 0 1169025 869 species Streptomyces albireticuli 1 0 1940 991 0 67267 1202 species Streptomyces alboflavus 1 1 Streptomyces fulvissimus species 68202 739 0 0 1355015 929 species Streptomyces pluripotens 1 1242 1969 0 1 Streptomyces chartreusis species 1916 1054 0 Streptomyces lividans species 1 1616117 1083 0 1 Streptomyces formicae species 0 193462 1054 1 species Streptomyces niveus 0 1106 1907 species Streptomyces glaucescens 1 0 33903 994 1 species Streptomyces avermitilis 1956 54571 0 Streptomyces venezuelae species 1 1915 1392 0 1 Streptomyces lincolnensis species species Streptomyces xinghaiensis 1 0 1038928 946 2 species group 629295 1870 0 1 species subgroup 1482596 981 0 1 species Streptomyces griseus 0 981 1911 species subgroup 1 889 1482558 0 1908 889 0 Streptomyces globisporus species 1 47763 3150 0 1 Streptomyces lydicus species 1 species Streptomyces albus 0 1888 2415 1 Streptomyces puniciscabiei species 1394 164348 0 Streptomyces autolyticus species 1 75293 1422 0 species Streptomyces bingchenggensis 1 0 379067 1881 1 Streptomyces hygroscopicus species 1912 3376 0 species Streptomyces sp. XZHG99 1 0 1010 2049881 1164 1930 0 Streptomyces scabiei species 1 0 1181 1783515 1 species Streptomyces sp. S10(2016) 831 1935 0 1 Streptomyces violaceoruber species 1 species Streptomyces xiamenensis 0 408015 1218 Streptomyces violaceusniger species 1 1464 68280 0 1 Streptomyces cyaneogriseus species 1153 68192 0 0 92644 1473 1 species Streptomyces malaysiensis 5 Kitasatospora 76 genus 1 6228 2063 0 0 1444 1894 species Kitasatospora aureofaciens 1 1 species Kitasatospora albolonga 0 68173 1061 1725 2066 0 Kitasatospora setae species 1 1 no rank 0 2633591 1922 1 Kitasatospora sp. MMS16-BH015 species 1922 2018025 0 1643683 320 0 order 3 1 family Acidothermaceae 3 0 320 85032 1 1 28048 319 0 2 Acidothermus genus 3 316 28049 0 1 Acidothermus cellulolyticus species 0 85004 197535 1 order 152 Bifidobacteriales 25 24 8937 family Bifidobacteriaceae 1 0 197383 31953 0 1042 2701 1 genus 1 species Gardnerella vaginalis 0 1042 2702 1 0 186083 1678 19 1160 genus Bifidobacterium 0 2277 1694 1 species Bifidobacterium pseudolongum Bifidobacterium asteroides species 1 1684 1386 0 48655 216816 0 1 Bifidobacterium longum species 0 158787 2655 1 species Bifidobacterium scardovii Bifidobacterium animalis species 1 28025 2199 0 species Bifidobacterium angulatum 1 0 2715 1683 Bifidobacterium breve species 1 16732 1685 0 species Bifidobacterium thermophilum 1 0 1873 33905 692 1691 0 Bifidobacterium indicum species 1 0 1681 34495 species Bifidobacterium bifidum 1 0 1689 1868 species Bifidobacterium dentium 1 1 Bifidobacterium pseudocatenulatum species 28026 42338 0 1293 35760 0 Bifidobacterium choerinum species 1 1 Bifidobacterium coryneforme species 1687 584 0 0 958 638619 species Bifidobacterium actinocoloniiforme 1 1680 4930 0 Bifidobacterium adolescentis species 1 6022 species Bifidobacterium catenulatum 2 0 19273 1686 1 13251 630129 0 Bifidobacterium kashiwanohense subspecies 1 Parascardovia genus 1 2 196082 784 0 1 0 783 78258 1 species Parascardovia denticolens 537 196081 0 genus 1 0 78259 537 species Scardovia inopinata 1 1 0 85014 1469 4 order 4 Glycomycetales 1 0 1465 85034 3 42 family Glycomycetaceae genus 38 Stackebrandtia 2 0 283810 1423 1 1 Stackebrandtia nassauensis species 1385 283811 0 1752188 1067 0 4 no rank 1 species Actinobacteria bacterium IMCC25003 0 1848255 280 species Actinobacteria bacterium IMCC19121 1 0 254 1848754 177 1848755 0 Actinobacteria bacterium IMCC26077 species 1 0 1848756 356 1 species Actinobacteria bacterium IMCC26103 6 Rubrobacteria 16 class 1 1730 84995 0 1714 84996 0 1 Rubrobacterales 42 order 5 1672 84997 0 1 Rubrobacteraceae 11 family 4 3 Rubrobacter 48 genus 1 1661 42255 0 0 1128 49319 1 species Rubrobacter xylanophilus 0 42256 485 1 species Rubrobacter radiotolerans 1 0 1116 84992 7 10 class Acidimicrobiia 32 order Acidimicrobiales 6 0 1106 84993 1 1 84994 323 0 3 Acidimicrobiaceae family 34 genus 3 Acidimicrobium 2 0 53634 289 1 1 species Acidimicrobium ferrooxidans 0 53635 286 751 2448023 0 2 family genus 17 Ilumatobacter 2 0 682522 751 1 0 467094 734 1 species Ilumatobacter coccineus Thermoleophilia 11 class 5 1429 1497346 0 1 4 order 71 Solirubrobacterales 1 0 588673 1418 Conexibacteraceae family 15 3 320583 1347 0 1 genus 56 Conexibacter 2 0 191494 1332 1 191495 1276 0 Conexibacter woesei species 1 class 651 Coriobacteriia 32 0 84998 93992 1 1 0 39756 84999 14 244 order Coriobacteriales 1 0 84107 26007 6 family 1259 Coriobacteriaceae 84113 2820 0 1 no rank 0 1531429 2820 species Coriobacteriaceae bacterium 68-1-3 1 2 genus 15 Coriobacterium 1 0 33870 1663 0 1648 33871 1 species Coriobacterium glomerans 20265 102106 0 1 Collinsella 67 genus 2 Collinsella aerofaciens species 1 20198 74426 0 7 Atopobiaceae family 323 1 1643824 13505 0 1588 2767353 0 genus 1 0 1588 1382 1 species Atopobium parvulum 1 genus Atopobium 0 15 1380 0 133925 11579 1 genus 116 Olsenella 4 Olsenella sp. Marseille-P2300 species 1 1805478 5661 0 1 no rank 2638792 2546 0 species Olsenella sp. oral taxon 807 1 0 712411 2546 species Olsenella uli 1 0 3256 133926 1 0 1643822 53585 17 order 578 Eggerthellales 16 Eggerthellaceae family 11562 1 1643826 53007 0 447020 6784 0 1 Adlercreutzia genus 7 2 species Adlercreutzia equolifaciens 1 0 446660 6777 3 Gordonibacter 62 genus 1 11434 644652 0 1335613 6012 0 Gordonibacter urolithinfaciens species 1 Gordonibacter massiliensis species 1 5360 1841863 0 1 79603 2255 0 2 Denitrobacterium genus 4 Denitrobacterium detoxificans species 1 2251 79604 0 0 84108 4508 1 genus 18 Slackia 2 species Slackia heliotrinireducens 1 0 4490 84110 0 1981050 1860 genus 1 1860 1944646 0 1 Phoenicibacter massiliensis species 3 genus 130 Eggerthella 1 0 84111 13588 10847 84112 0 Eggerthella lenta species 1 0 2611 2648737 1 no rank 2611 502558 0 Eggerthella sp. YY7918 species 1 1 0 1016 84162 2 15 genus Cryptobacterium 1001 84163 0 1 Cryptobacterium curtum species clade 152 1798711 62270 0 0 1117 62270 1 phylum 28 Cyanobacteria 152 34 47 order Nostocales 1 0 15668 1161 1 no rank 677 1219117 0 1 Nostocales cyanobacterium HT-58-2 species 677 1940762 0 3 2 family Hapalosiphonaceae 1 0 668 1892263 1 666 1190 0 2 Fischerella 4 genus 1 no rank 662 494603 0 1 Fischerella sp. NIES-3754 species 1752063 662 0 3 Rivulariaceae 19 family 1 896 1185 0 2 Rivularia 2 genus 1 877 373984 0 2676603 875 0 no rank 1 species Rivularia sp. PCC 7116 1 0 373994 875 8 family 4681 2661849 0 Calothrix 25 genus 8 4681 1186 0 1 2619626 4053 0 6 no rank 1 Calothrix sp. NIES-4101 species 2005461 680 0 1 Calothrix sp. PCC 7507 species 601 99598 0 Calothrix sp. NIES-2098 species 1 669 1954171 0 1337936 525 0 Calothrix sp. 336/3 species 1 1 species Calothrix sp. NIES-3974 0 2005462 725 0 2005469 853 1 species Calothrix sp. NIES-4071 species Calothrix parietina 1 0 32054 603 0 1162 8699 1 family 11 Nostocaceae 18 0 1163 2098 1 genus 2 Anabaena 4 2 no rank 2619674 1410 0 46234 713 0 1 Anabaena sp. 90 species 0 1647413 697 species Anabaena sp. WA102 1 1 Anabaena cylindrica species 686 1165 0 10 37 genus Nostoc 1 0 5618 1177 Nostoc flagelliforme species 1 1306274 953 0 no rank 7 2593658 4067 0 1 Nostoc sp. PCC 7524 species 582 28072 0 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' species 1618022 501 0 species Nostoc sp. NIES-3756 1 0 1751286 622 0 591 103690 species Nostoc sp. PCC 7120 1 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 0 587 1261031 317936 416 0 1 Nostoc sp. PCC 7107 species 1869241 768 0 Nostoc sp. CENA543 species 1 1 Nostoc punctiforme species 272131 561 0 1 0 264688 972 3 genus 2 Trichormus 1 species Trichormus azollae 0 414 1164 Trichormus variabilis species 1 556 264691 0 subclass 42 0 15019 1301283 17 Oscillatoriales order 39 1 1150 5577 0 2 Gomontiellaceae family 10 1 1892255 668 0 0 241421 658 genus 1 658 241425 0 1 Crinalium epipsammum species Coleofasciculaceae 10 family 2 954 1892251 0 1 0 944 63132 1 genus no rank 1 0 944 2648775 1 species Geitlerinema sp. PCC 7407 0 1173025 944 1 0 1892254 1981 5 family 6 Oscillatoriaceae 3 1 genus Oscillatoria 1 0 1189 1158 1 Oscillatoria nigro-viridis species 482564 666 0 1 species Oscillatoria acuminata 0 522 118323 genus 1 0 1155738 786 species Moorea producens 1 0 1155739 786 3 Cyanothecaceae family 19 1 1892249 625 0 1 606 43988 0 2 Cyanothece 21 genus 1 no rank 2649277 585 0 1 Cyanothece sp. PCC 7425 species 585 395961 0 1892252 1310 0 1 Microcoleaceae family 6 4 1 genus 504 44471 0 no rank 1 0 2642155 504 1 Microcoleus sp. PCC 7113 species 504 1173027 0 0 1205 800 1 genus 1 Trichodesmium 2 species Trichodesmium erythraeum 1 0 799 1206 15 order Chroococcales 25 0 9442 1118 1 1621 1890449 0 1 Microcystaceae 11 family 4 3 genus 9 Microcystis 1 0 1125 1610 Microcystis aeruginosa species 1 1134 1126 0 0 467 2643300 1 no rank 1 Microcystis sp. MC19 species 467 1967666 0 8 family 6 Chroococcaceae 1 0 1890464 2674 0 1624 669357 1 5 genus Geminocystis 3 no rank 2 0 2625037 1619 1 species Geminocystis sp. NIES-3708 0 1615909 950 669 1617448 0 1 Geminocystis sp. NIES-3709 species 1 genus Chondrocystis 2 0 526 268175 1 no rank 1 0 525 2648896 1 species Chondrocystis sp. NIES-4102 0 2005460 525 1 518 102231 0 2 Gloeocapsa 5 genus 1 no rank 0 2623012 513 1 Gloeocapsa sp. PCC 7428 species 1173026 513 0 1 0 4108 1890450 10 2 family Aphanothecaceae genus 1 0 522 263510 0 522 2546360 species 1 1 Cyanothece sp. ATCC 51142 strain 43989 522 0 2 no rank 92682 397 0 Halothece genus 4 2 76023 397 0 1 2632878 393 0 1 no rank Halothece sp. PCC 7418 species 1 393 65093 0 genus 2 28070 1577 0 1 species 775 2546356 0 0 65393 775 1 strain Cyanothece sp. PCC 7424 1 species 0 802 2546359 strain Cyanothece sp. PCC 7822 1 0 497965 802 2 genus 0 1170 2546365 0 2546366 1170 species 2 strain Cyanothece sp. PCC 8801 1 0 586 41431 0 395962 584 1 strain Cyanothece sp. PCC 8802 2 1 genus Candidatus Atelocyanobacterium 1 0 440 1453359 species Candidatus Atelocyanobacterium thalassa 1 0 713887 439 family 2 0 1890452 1024 Cyanobacterium genus 1 2 102234 1024 0 1 0 379064 1023 1 species Cyanobacterium aponinum 57 214 order Synechococcales 1 0 26461 1890424 0 3844 1213 1 3 family Prochloraceae 5 1 1218 3841 0 4 Prochlorococcus genus 3 0 935 2627481 2 no rank species Prochlorococcus sp. MIT 0801 1 0 503 1501269 1 species Prochlorococcus sp. MIT 0604 0 1501268 432 0 2903 1219 species Prochlorococcus marinus 1 2 family 565 2303730 0 565 170610 0 1 Halomicronema 3 genus 2 1 Halomicronema hongdechloris species 1209493 562 0 Pseudanabaenaceae family 2 3 1890436 442 0 1 2 Pseudanabaena 4 genus 1 440 1152 0 0 436 2593292 1 no rank 1 species Pseudanabaena sp. PCC 7367 0 82654 436 2 1 family Acaryochloridaceae 1 0 666 1890429 155977 665 0 genus 1 Acaryochloris marina species 1 665 155978 0 Synechococcaceae family 74 33 1890426 16410 0 1 2 Dactylococcopsis genus 4 1 13034 555 0 1 species Dactylococcopsis salina 0 551 292566 0 146785 368 1 genus 146786 368 0 1 Thermosynechococcus elongatus species 0 167375 3244 1 genus 43 Cyanobium 3 0 1709 2627006 no rank 1 1851505 1709 0 1 Cyanobium sp. NIES-981 species species Cyanobium gracile 1 0 59930 1492 1 1129 12169 0 26 Synechococcus genus 241 0 2626047 11217 23 no rank species Synechococcus sp. KORDI-52 1 0 556 585425 1 species Synechococcus sp. NIES-970 0 497 1827144 0 374982 312 1 species Synechococcus sp. PCC 73109 1 species Synechococcus sp. JA-3-3Ab 0 1023 321327 84588 553 0 Synechococcus sp. WH 8102 species 1 0 29410 536 species Synechococcus sp. WH 8103 1 235 195253 0 Synechococcus sp. PCC 6312 species 1 1 Synechococcus sp. KORDI-100 species 1280380 407 0 0 533 1173263 1 species Synechococcus sp. PCC 7502 Synechococcus sp. PCC 7117 species 1 437 195498 0 585423 677 0 1 Synechococcus sp. KORDI-49 species 1 species Synechococcus sp. SynAce01 0 697 1916956 Synechococcus sp. CC9902 species 1 228 316279 0 546 316278 0 Synechococcus sp. RCC307 species 1 1 species Synechococcus sp. UTEX 2973 0 362 1350461 0 481 110662 1 species Synechococcus sp. CC9605 1 Synechococcus sp. JA-2-3B'a(2-13) species 321332 532 0 418 374981 0 1 Synechococcus sp. PCC 7003 species 1 Synechococcus sp. CC9311 species 282 64471 0 32051 606 0 1 Synechococcus sp. WH 7803 species 0 484 166314 1 species Synechococcus sp. WH 8109 0 195248 427 species Synechococcus sp. PCC 8807 1 species Synechococcus sp. PCC 7002 1 0 388 32049 354 33070 0 Synechococcus lividus species 1 1 Synechococcus elongatus species 32046 357 0 1 0 3146 1890438 6 14 family Leptolyngbyaceae 0 47251 3132 1 genus 6 Leptolyngbya 5 Leptolyngbya boryana species 1 1184 668 0 3 no rank 2650499 2458 0 0 1203 1080068 1 species Leptolyngbya sp. O-77 1 species Leptolyngbya sp. PCC 7376 0 111781 600 0 655 1752064 species Leptolyngbya sp. NIES-3755 1 5 family 1 Merismopediaceae 1 0 1890428 1174 1 0 1142 1173 4 genus 28 Synechocystis 2640012 1145 0 3 no rank species Synechocystis sp. IPPAS B-1465 1 0 2116702 357 0 1148 357 1 species Synechocystis sp. PCC 6803 0 431 1147 1 species Synechocystis sp. PCC 6714 6 40 class Gloeobacteria 1 0 2328 307596 1 0 307595 2288 5 order 28 Gloeobacterales 0 2260 1890422 1 18 family Gloeobacteraceae 4 1 0 33071 2242 3 genus 37 Gloeobacter 0 1135 33072 species Gloeobacter violaceus 1 1416614 1070 0 Gloeobacter kilaueensis species 1 300 1983111 0 1 no rank species cyanobacterium endosymbiont of Epithemia turgida 1 0 300 718217 1852 52604 0 1 Pleurocapsales 43 order 8 1 0 1890498 1322 4 family 9 Dermocarpellaceae 0 1313 102115 1 7 genus Stanieria 3 1 no rank 0 635 2642663 0 1807358 635 1 species Stanieria sp. NIES-3757 0 671 102116 1 species Stanieria cyanosphaera 1 0 1890500 487 3 family 6 Hyellaceae 1 44474 481 0 2 Pleurocapsa genus 2 0 54308 479 1 species Pleurocapsa minor 3 order 0 1890505 614 3 10 family Chroococcidiopsidaceae 1 0 614 1890528 1 0 54298 604 2 genus 1 Chroococcidiopsis Chroococcidiopsis thermalis species 1 54299 603 0 16357 200795 0 1 Chloroflexi 5 phylum 46 8 Thermomicrobia 11 class 1 1280 189775 0 0 189776 361 1 order 3 Thermomicrobiales 3 Thermomicrobiaceae family 1 2 189777 358 0 1 499 357 0 1 genus 0 500 357 1 species Thermomicrobium roseum 0 85000 908 subclass 4 4 Sphaerobacterales 20 order 1 908 85001 0 3 suborder 0 888 255728 85002 888 0 1 Sphaerobacteraceae family 9 3 1 0 879 2056 2 7 genus Sphaerobacter 2057 872 0 1 Sphaerobacter thermophilus species 1 475962 1245 0 5 Caldilineae class 6 4 order 14 Caldilineales 1 0 475963 1239 Caldilineaceae family 4 3 475964 1225 0 1 2 genus 24 Caldilinea 1 0 233191 1221 133453 1197 0 Caldilinea aerophila species 1 3944 32061 0 1 Chloroflexia 27 class 11 1 32064 3917 0 10 Chloroflexales order 32 4 suborder 0 1977 1508595 4 family 23 Roseiflexaceae 1 0 1508635 1977 1 0 120961 1954 3 genus 3 Roseiflexus 0 2609473 959 1 no rank 1 species Roseiflexus sp. RS-1 0 959 357808 1 species Roseiflexus castenholzii 0 120962 992 1908 1508594 0 suborder 5 5 Chloroflexaceae family 6 1 1106 1908 0 26 genus Chloroflexus 4 0 1902 1107 1 1 0 1108 1221 2 species 613 Chloroflexus aurantiacus strain Chloroflexus sp. Y-400-fl 1 0 608 480224 Chloroflexus aggregans species 1 152260 655 0 0 301297 4444 1 class 12 Dehalococcoidia 9 order 4 Dehalococcoidales 5 0 1202465 3287 1 1 0 1202464 3283 4 family 4 Dehalococcoidaceae 0 3279 61434 1 2 genus Dehalococcoides 3 1 species Dehalococcoides mccartyi 0 2664 61435 613 237581 0 no rank 1 613 1522671 0 Dehalococcoides sp. UCH007 species 1 1145 670486 0 1 Dehalogenimonas 6 genus 3 1839801 545 0 Dehalogenimonas formicexedens species 1 species Dehalogenimonas lykanthroporepellens 1 0 594 552810 Anaerolineae class 9 7 292625 2895 0 1 1 0 2886 292629 6 5 order Anaerolineales Anaerolineaceae 14 family 5 2881 292628 0 1 2 genus Anaerolinea 2 0 952 233189 1 1 Anaerolinea thermophila species 950 167964 0 no rank 1 1324991 1407 0 1 Anaerolineaceae bacterium oral taxon 439 species 1407 1889813 0 genus 1 0 2019482 508 1 Brevefilum fermentans species 1986204 508 0 Ardenticatenia class 71 5 1382928 2544 0 1 4 order 35 Ardenticatenales 1 0 1382929 2473 Ardenticatenaceae family 13 3 1382930 2438 0 1 genus 32 Candidatus Promineofilum 2 0 1988031 2425 1 0 2393 1806508 1 species Candidatus Promineofilum breve 1757 200940 0 phylum 9 9 Thermodesulfobacteria 2 class 1 1757 67799 0 1755 188710 0 1 Thermodesulfobacteriales 2 order 8 7 family 4 Thermodesulfobacteriaceae 1 0 188711 1753 genus 1 444090 450 0 450 1653476 0 1 Caldimicrobium thiodismutans species Thermodesulfatator 2 genus 2 435 241192 0 1 1 Thermodesulfatator indicus species 433 171695 0 3 Thermodesulfobacterium 1 genus 1 864 1740 0 species Thermodesulfobacterium geofontis 1 0 620 1295609 1 species Thermodesulfobacterium commune 0 243 1741 clade 3 0 2498710 345 phylum 3 0 345 67814 345 693071 0 class 3 1 0 345 693072 3 2 order Caldisericales 0 343 693073 1 3 family Caldisericaceae 2 genus 1 340 693074 0 Caldisericum exile species 1 340 693075 0 no rank 3 2323 534 0 clade 3 534 1783234 0 0 95818 161 phylum 1 no rank 1 1895827 161 0 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 1 0 2056494 161 2 clade 0 95901 373 class 2 373 2497643 0 2497644 373 0 2 order family 2 2497645 373 0 0 373 1551504 1 1 genus Candidatus Babela 2 1 Candidatus Babela massiliensis species 372 673862 0 phylum 57 0 49466 203691 1 0 49466 203692 57 111 class Spirochaetia 0 36092 136 1 701 order Spirochaetales 41 0 4599 1643685 1 2 family Borreliaceae 17 1 0 2272 64895 8 118 genus Borreliella 0 62088 199 1 species Borreliella valaisiana species Borreliella garinii 1 0 480 29519 1 species Borrelia mayonii 0 363 1674146 species Borreliella burgdorferi 1 0 139 289 species Borreliella afzelii 1 0 29518 240 0 193 664662 species Borreliella bavariensis 1 1 Borreliella bissettii species 390 64897 0 8 genus 27 Borrelia 1 0 138 2325 351 44449 0 1 Borrelia recurrentis species 141 310 0 1 Borrelia parkeri species species Borrelia hermsii 1 0 140 240 1 species Borrelia duttonii 0 40834 380 Borrelia miyamotoi species 1 508 47466 0 1 Borrelia turicatae species 142 305 0 143 204 0 1 Borrelia anserina species 1 0 30792 137 23 607 family Spirochaetaceae 12 genus 378 Treponema 1 0 157 21175 3778 221027 0 Treponema putidum species 1 Treponema succinifaciens species 1 5177 167 0 877 409322 0 Treponema pedis species 1 Treponema caldarium species 1 930 215591 0 0 1901 158 1 species Treponema denticola Treponema azotonutricium species 1 1305 150829 0 160 177 0 1 Treponema pallidum species 1 species Treponema brennaborense 0 81028 1997 1 species Treponema paraluiscuniculi 0 53435 177 3134 2638727 0 1 no rank Treponema sp. OMZ 838 species 1 1539298 3134 0 Treponema primitia species 1 1344 88058 0 1 0 1211 1911556 2 1 genus Sediminispirochaeta 55206 1210 0 1 Sediminispirochaeta smaragdinae species 1 genus 1040 1616789 0 1307761 1040 0 1 Salinispira pacifica species 4146 399320 0 1 Sphaerochaeta 2 genus 4 1131707 1631 0 Sphaerochaeta pleomorpha species 1 1519 1131703 0 Sphaerochaeta globosa species 1 1 species Sphaerochaeta coccoides 0 273376 994 146 2613 0 1 Spirochaeta genus 21 3 0 1576 154 species Spirochaeta thermophila 1 species Spirochaeta africana 1 0 46355 1016 0 3590 1643688 8 order 0 170 3590 1 family 5 Leptospiraceae 8 genus 1 606 338321 0 1 species Turneriella parva 0 29510 606 Leptospira genus 14 6 171 2979 0 1 173 1024 0 Leptospira interrogans species 1 species Leptospira biflexa 1 0 382 172 556 174 0 1 Leptospira borgpetersenii species Leptospira alstonii species 1 558 28452 0 species Leptospira santarosai 1 0 28183 445 1 0 9673 1643686 7 3 order Brachyspirales 143786 9670 0 1 Brachyspiraceae family 25 6 5 41 genus Brachyspira 1 0 9645 29521 1 species Brachyspira murdochii 0 84378 1612 1 species Brachyspira intermedia 0 1778 84377 159 1706 0 1 Brachyspira hyodysenteriae species 1 Brachyspira pilosicoli species 4508 52584 0 5949 200783 0 phylum 25 25 class 7 Aquificae 1 0 187857 5949 32069 4945 0 1 Aquificales order 4 19 6 family 13 Hydrogenothermaceae 1 0 224027 1901 Sulfurihydrogenibium genus 4 3 212790 1427 0 1 no rank 1 0 842 2619248 species Sulfurihydrogenibium sp. YO3AOP1 1 0 436114 842 1 Sulfurihydrogenibium azorense species 309806 581 0 182899 461 0 1 Persephonella genus 3 2 1 species Persephonella marina 0 458 309805 0 2582 64898 1 7 family Aquificaceae 11 Hydrogenobaculum 37 genus 6 1739 168657 0 1 2622382 1702 0 no rank 5 274 380749 0 Hydrogenobaculum sp. Y04AAS1 species 1 1 species Hydrogenobaculum sp. SN 0 357 547146 Hydrogenobaculum sp. SHO species 1 357 547145 0 0 547144 357 species Hydrogenobaculum sp. HO 1 547143 357 0 Hydrogenobaculum sp. 3684 species 1 genus 2 0 318 75905 species Thermocrinis albus 1 0 102 136094 0 216 75906 1 species Thermocrinis ruber 0 221 939 genus 1 Hydrogenobacter thermophilus species 1 940 221 0 genus 1 297 2713 0 297 63363 0 Aquifex aeolicus species 1 0 90150 458 1 no rank 1 genus 0 412592 458 0 458 412593 species Thermosulfidibacter takaii 1 Desulfurobacteriales order 2 5 1485951 997 0 1 1 0 995 558314 4 5 family Desulfurobacteriaceae 2 genus 1 Thermovibrio 1 0 171868 342 Thermovibrio ammonificans species 1 228745 341 0 genus 1 64159 648 0 1 Desulfurobacterium thermolithotrophum species 64160 648 0 0 1224 1655872 1 phylum 696 Proteobacteria 2013 0 1807140 1808 1 class 1 Acidithiobacillia 7 1 0 225057 1807 6 order 27 Acidithiobacillales 5 family 20 Acidithiobacillaceae 1 0 225058 1780 0 119977 1760 1 genus 8 Acidithiobacillus 4 Acidithiobacillus ferrooxidans species 1 920 628 0 Acidithiobacillus ferrivorans species 1 581 160808 0 species Acidithiobacillus caldus 1 0 543 33059 0 28216 319060 1 class 602 Betaproteobacteria 349 order 354 Neisseriales 36 0 206351 28526 1 134 family Neisseriaceae 22 0 16168 481 1 12 Neisseria 201 genus 1 11604 482 0 900 490 0 Neisseria sicca species 1 0 1871 2623750 no rank 2 Neisseria sp. 10022 species 1 633 1853276 0 1 species Neisseria sp. KEM232 0 1238 655307 1 species Neisseria weaveri 0 28091 822 0 495 809 1 species Neisseria elongata 689 485 0 1 Neisseria gonorrhoeae species Neisseria mucosa species 1 488 1109 0 Neisseria zoodegmatis species 1 326523 728 0 1 Neisseria meningitidis species 2492 487 0 Neisseria lactamica species 1 1135 486 0 1853278 848 0 Neisseria sp. 10023 species 1 genus 6 Snodgrassella 2 0 1193515 900 1 1196083 894 0 1 Snodgrassella alvi species 1 538 854 0 2 Eikenella genus 23 831 539 0 Eikenella corrodens species 1 59 1702 0 1 Vitreoscilla genus 22 3 0 2627922 505 no rank 1 0 505 96942 species Vitreoscilla sp. C1 1 1 Vitreoscilla filiformis species 1175 63 0 71 391 0 1 genus 72 391 0 1 Simonsiella muelleri species 0 583 421605 no rank 1 species Neisseriaceae bacterium DSM 100970 1 0 2052837 583 12004 1499392 0 1 Chromobacteriaceae 166 family 13 0 187 1441 1 genus 10 Aquaspirillum 2 0 1431 2620219 1 no rank species Aquaspirillum sp. LM1 1 0 1431 1938604 0 1247 885864 1 19 genus Jeongeupia 2 1 no rank 2619593 1228 0 Jeongeupia sp. USM3 species 1 1906741 1228 0 2 genus 45 Pseudogulbenkiania 1 0 568394 1565 1 no rank 0 1520 2642558 1520 748280 0 Pseudogulbenkiania sp. NH8B species 1 0 90153 6000 no rank 4 4 78 genus Chromobacterium 1 0 6000 535 1108595 2389 0 Chromobacterium vaccinii species 1 0 1894 536 1 species Chromobacterium violaceum 2641838 1639 0 1 no rank 2059672 1639 0 Chromobacterium sp. ATCC 53434 species 1 0 168470 1585 1 genus 26 Laribacter 2 1 species Laribacter hongkongensis 0 168471 1559 0 254931 80840 1 2904 order Burkholderiales 234 47690 506 0 1 Alcaligenaceae 418 family 42 1322 290425 0 1 Advenella 8 genus 3 1 Advenella kashmirensis species 702 310575 0 Advenella mimigardefordensis species 1 612 302406 0 Alcaligenes genus 3 2 507 1737 0 1 species Alcaligenes faecalis 1 0 1734 511 2 genus 2 Paenalcaligenes 1 0 1100891 330 328 643674 0 1 Paenalcaligenes hominis species 1 1526 1921582 0 2 Orrella 60 genus species Orrella dioscoreae 1 0 1466 1851544 90243 562 0 1 genus Oligella urethralis species 1 562 90245 0 1 727 305976 0 2 Pusillimonas 2 genus 1 no rank 0 725 2640016 1007105 725 0 Pusillimonas sp. T7-7 species 1 819 29574 0 2 genus species Taylorella asinigenitalis 1 0 84590 409 29575 410 0 1 Taylorella equigenitalis species 1 517 21276 0 17 Bordetella genus 755 0 1114 123899 species Bordetella trematum 1 species Bordetella pertussis 1 0 1079 520 0 1416803 1444 1 species Bordetella genomosp. 9 Bordetella genomosp. 6 species 1 1337 463024 0 Bordetella flabilis species 1 1064 463014 0 35814 669 0 Bordetella holmesii species 1 Bordetella bronchialis species 1 1574 463025 0 2440 518 0 1 Bordetella bronchiseptica species species Bordetella genomosp. 13 1 0 1256 463040 0 1166 2630031 1 no rank species Bordetella sp. H567 1 0 1697043 1166 1426 103855 0 Bordetella hinzii species 1 0 94624 1189 1 species Bordetella petrii Bordetella genomosp. 8 species 1 1416806 1490 0 Bordetella avium species 1 686 521 0 1 species Bordetella parapertussis 0 1299 519 1 Bordetella pseudohinzii species 1331258 1288 0 Basilea genus 9 2 1472344 502 0 1 1472345 493 0 1 Basilea psittacipulmonis species genus 75 Castellaniella 2 0 359336 1595 1 1520 75697 0 Castellaniella defragrans species 1 1 0 16876 222 6 647 genus Achromobacter Achromobacter denitrificans species 1 32002 3554 0 no rank 1 1554 2626865 0 0 1758194 1554 1 species Achromobacter sp. AONIH1 1 Achromobacter spanius species 2747 217203 0 217204 1594 0 Achromobacter insolitus species 1 0 85698 6780 species Achromobacter xylosoxidans 1 no rank 2 2046 80841 0 0 1469502 725 1 species Burkholderiales bacterium GJ-E10 1 Burkholderiales bacterium YL45 species 1834205 1321 0 0 13762 224471 17 no rank genus 65 Rubrivivax 2 0 28067 1871 1 1 Rubrivivax gelatinosus species 1806 28068 0 1 0 1610 88 2 39 genus Leptothrix 34029 1571 0 1 Leptothrix cholodnii species 316612 1532 0 1 Methylibium genus 52 2 1480 105560 0 Methylibium petroleiphilum species 1 2 genus 23 Thiomonas 1 0 32012 1436 1 species Thiomonas intermedia 0 1413 926 1130 413882 0 [Polyangium] brachysporum species 1 2 68 genus Rhizobacter 1 0 1658 212743 1590 946333 0 Rhizobacter gummiphilus species 1 1400 65047 0 1 Mitsuaria 37 genus 2 2648776 1363 0 1 no rank 1 species Mitsuaria sp. 7 0 1363 1658665 2 Paucibacter genus 35 1 318147 1400 0 0 2642959 1365 1 no rank Paucibacter sp. KCTC 42545 species 1 1365 1768242 0 1 1725 93681 0 2 Roseateles 45 genus 1 species Roseateles depolymerans 0 76731 1680 119060 94566 0 1 Burkholderiaceae family 682 84 48736 10563 0 1 Ralstonia genus 204 5 species Ralstonia mannitolilytica 1 0 1548 105219 species Ralstonia solanacearum 1 0 305 4797 0 329 2514 1 species Ralstonia pickettii 1 species Ralstonia insidiosa 0 1500 190721 0 93217 7882 1 genus 168 Pandoraea 10 983 93220 0 Pandoraea pnomenusa species 1 1 species Pandoraea apista 0 942 93218 Pandoraea vervacti species 1 656178 1095 0 species Pandoraea thiooxydans 1 0 445709 798 93219 767 0 Pandoraea norimbergensis species 1 Pandoraea pulmonicola species 1 688 93221 0 Pandoraea faecigallinarum species 1 656179 799 0 species Pandoraea oxalativorans 1 0 573737 926 species Pandoraea sputorum 1 0 93222 716 0 106589 14589 1 genus 643 Cupriavidus 9 0 82541 1185 species Cupriavidus gilardii 1 Cupriavidus basilensis species 1 1348 68895 0 0 367825 2022 1 species Cupriavidus sp. USMAA1020 248026 1298 0 1 Cupriavidus pinatubonensis species 0 2418 106590 1 species Cupriavidus necator Cupriavidus metallidurans species 1 119219 1575 0 2 no rank 0 2640874 4100 species Cupriavidus sp. USMAA2-4 1 0 876364 2202 species Cupriavidus sp. USMAHM13 1 0 1898 1389192 45595 32008 0 1 Burkholderia 2440 genus 41 0 111527 6447 7 species group 1 species Burkholderia mallei 0 477 13373 0 619 1637837 1 species Burkholderia sp. MSMB0266 0 648 1637841 1 species Burkholderia sp. MSMB0852 1658 28450 0 1 Burkholderia pseudomallei species 0 57975 1651 species Burkholderia thailandensis 1 1 species Burkholderia sp. MSMB617WGS 0 603 1637831 0 791 342113 1 species Burkholderia oklahomensis 2613784 9084 0 no rank 11 Burkholderia sp. RPE67 species 1 1088 758796 0 836 1678678 0 1 Burkholderia sp. HB1 species 1 species Burkholderia sp. Bp7605 0 987 1740163 0 640512 881 species Burkholderia sp. CCGE1003 1 611 1468409 0 1 Burkholderia sp. 2002721687 species Burkholderia sp. PAMC 26561 species 1 1795043 705 0 Burkholderia sp. YI23 species 1 1030 1097668 0 0 416344 678 1 species Burkholderia sp. KJ006 species Burkholderia sp. PAMC 28687 1 0 1795874 808 1740162 664 0 Burkholderia sp. Bp5365 species 1 640510 796 0 Burkholderia sp. CCGE1001 species 1 0 337 2108 species Burkholderia glumae 1 species Burkholderia plantarii 1 0 41899 1311 22292 87882 0 19 species group 727 488447 0 Burkholderia contaminans species 1 0 1503055 460 species Burkholderia territorii 1 1 species Burkholderia metallica 0 633 488729 1 species Burkholderia cepacia 0 292 4026 species Burkholderia latens 1 0 714 488446 species Burkholderia ambifaria 1 0 1058 152480 1 species Burkholderia vietnamiensis 0 60552 1126 1508 87883 0 1 Burkholderia multivorans species 0 1057 95485 species Burkholderia stabilis 1 488732 585 0 1 Burkholderia diffusa species 95486 3536 0 1 Burkholderia cenocepacia species species Burkholderia dolosa 1 0 666 152500 1207504 665 0 1 Burkholderia pseudomultivorans species 587 1503054 0 1 Burkholderia stagnalis species 1 Burkholderia pyrrocinia species 60550 490 0 1 species [Pseudomonas] mesoacidophila 0 703 265293 species Burkholderia lata 1 0 1004 482957 species Burkholderia ubonensis 1 0 101571 2190 488731 557 0 1 Burkholderia seminalis species 1913 28095 0 1 Burkholderia gladioli species 3 genus Polynucleobacter 4 0 919 44013 1 1 Polynucleobacter duraquae species 1835254 311 0 0 361 576611 1 species Polynucleobacter asymbioticus 0 576610 244 1 species Polynucleobacter necessarius genus 1 2571159 498 0 species Paraburkholderia rhizoxinica 1 0 412963 498 902 1827195 0 genus 1 0 758793 902 1 species Burkholderia sp. RPE64 341 genus Paraburkholderia 12 0 12936 1822464 1 species Paraburkholderia caribensis 1 0 1406 75105 Paraburkholderia xenovorans species 1 1044 36873 0 311230 1135 0 Paraburkholderia terrae species 1 1502 148447 0 1 Paraburkholderia phymatum species 1 Paraburkholderia phenoliruptrix species 252970 853 0 1 species Paraburkholderia hospita 0 1484 169430 1 species Paraburkholderia fungorum 0 134537 1100 Paraburkholderia aromaticivorans species 1 1112 2026199 0 261302 850 0 Paraburkholderia phytofirmans species 1 0 2615204 946 1 no rank 1 Paraburkholderia sp. SOS3 species 946 1926494 0 0 1163 948107 species Paraburkholderia sprentiae 1 59 Comamonadaceae 1104 family 1 63632 80864 0 Limnohabitans 20 genus 3 1147 665874 0 1 2 no rank 1127 2626134 0 species Limnohabitans sp. 63ED37-2 1 0 1678128 736 0 1678129 391 1 species Limnohabitans sp. 103DPR2 genus 209 Delftia 5 0 80865 7404 1 0 180282 1877 1 species Delftia tsuruhatensis 2 no rank 3643 2613839 0 1861 1920191 0 1 Delftia sp. HK171 species 1 Delftia sp. Cs1-4 species 1782 742013 0 1 Delftia acidovorans species 1675 80866 0 2 Diaphorobacter 1 genus 1 1144 238749 0 1 species Diaphorobacter polyhydroxybutyrativorans 0 1143 1546149 4 Hydrogenophaga 102 genus 1 3500 47420 0 2610897 2487 0 2 no rank species Hydrogenophaga sp. PBC 1 0 1357 795665 1842537 1130 0 1 Hydrogenophaga sp. RAC07 species species Hydrogenophaga crassostreae 1 0 1763535 911 28065 6427 0 1 Rhodoferax genus 62 5 1 species Rhodoferax saidenbachensis 0 1484693 971 species Rhodoferax koreense 1 0 1699 1842727 1 Rhodoferax ferrireducens species 767 192843 0 1 species Rhodoferax antarcticus 0 81479 2928 0 7677 34072 1 198 genus Variovorax 5 1544 436515 0 1 Variovorax boronicumulans species no rank 2 0 663243 2543 0 1807 2126319 1 species Variovorax sp. PMC12 0 736 1795631 1 species Variovorax sp. PAMC 28711 1 Variovorax paradoxus species 34073 3392 0 0 174951 2694 1 genus 21 Ramlibacter 2 0 94132 2673 species Ramlibacter tataouinensis 1 12 genus Verminephrobacter 2 0 1009 364316 1 1 Verminephrobacter eiseniae species 997 364317 0 4 Comamonas genus 37 1 283 8850 0 Comamonas serinivorans species 1 1307 1082851 0 1 Comamonas testosteroni species 285 2636 0 1 species Comamonas kerstersii 0 225992 4870 1 1233 1649468 0 2 Melaminivora 60 genus 1173 2641902 0 no rank 1 0 1173 2109913 1 species Melaminivora sp. SC2-9 Candidatus Symbiobacter genus 6 2 1436289 617 0 1 species Candidatus Symbiobacter mobilis 1 0 1436290 611 1026 352450 0 1 Simplicispira 15 genus 2 0 1011 2109915 1 species Simplicispira sp. SC1-8 genus 1 1462 2678886 0 0 1462 2116657 species Melaminivora sp. SC2-7 1 0 201096 1787 1 genus 9 Alicycliphilus 2 0 179636 1778 1 species Alicycliphilus denitrificans 2 genus 0 1591 2490452 species Comamonadaceae bacterium A1 1 0 804 1458425 1458426 787 0 1 Comamonadaceae bacterium B1 species Ottowia genus 9 3 219181 2351 0 1 2645081 1253 0 1 no rank 1253 1658672 0 1 Ottowia sp. oral taxon 894 species 0 2109914 1089 species Ottowia sp. KADR8-3 1 1 0 2447 52972 3 21 genus Polaromonas species Polaromonas naphthalenivorans 1 0 1216 216465 1 no rank 1210 2638319 0 1210 296591 0 Polaromonas sp. JS666 species 1 413 genus Acidovorax 9 0 10162 12916 1 2684926 4982 0 no rank 4 0 1362 358220 1 species Acidovorax sp. KKS102 1275 1842533 0 Acidovorax sp. RAC01 species 1 1858609 1152 0 Acidovorax sp. T1 species 1 232721 1193 0 Acidovorax sp. JS42 species 1 Acidovorax ebreus species 1 1155 721785 0 1 Acidovorax avenae species 80867 1354 0 1156 80869 0 Acidovorax citrulli species 1 1 Acidovorax sp. NA3 species 1102 553814 0 29 323 family Oxalobacteraceae 1 0 30331 75682 2 Oxalobacter 1 genus 1 1617 846 0 847 1616 0 1 Oxalobacter formigenes species 4 Collimonas genus 106 1 202907 4887 0 1616 279058 0 1 Collimonas arenae species 1 species Collimonas pratensis 0 1570 279113 1 Collimonas fungivorans species 1595 158899 0 Massilia 212 genus 6 8200 149698 0 1 3227 2609279 0 2 no rank Massilia sp. WG5 species 1 1707785 1298 0 0 1678028 1929 species Massilia sp. NR 4-1 1 1 Massilia putida species 1141883 1515 0 species Massilia sp. ZMN-3 1 0 2072590 1864 0 2045208 1382 1 species Massilia sp. B2 0 7167 29580 1 113 genus Janthinobacterium 7 0 368607 1309 species Janthinobacterium svalbardensis 1 Janthinobacterium agaricidamnosum species 1 1283 55508 0 no rank 4 4462 2610881 0 1 species Janthinobacterium sp. LM6 0 1938606 1149 Janthinobacterium sp. B9-8 species 1 1236179 890 0 375286 880 0 Janthinobacterium sp. Marseille species 1 1 Janthinobacterium sp. 1_2014MBL_MicDiv species 1644131 1543 0 0 963 7008 1 genus 230 Herbaspirillum 6 0 1028 2624150 no rank 1 2025949 1028 0 1 Herbaspirillum sp. meg3 species 92645 1578 0 Herbaspirillum frisingense species 1 species Herbaspirillum seropedicae 1 0 1725 964 341045 1009 0 1 Herbaspirillum hiltneri species 0 80842 1438 1 species Herbaspirillum rubrisubalbicans Herminiimonas genus 11 3 303379 1129 0 1 204773 634 0 Herminiimonas arsenicoxydans species 1 1 species Herminiimonas arsenitoxidans 0 1809410 484 2 no rank 1256 33809 0 Betaproteobacteria bacterium GR16-43 species 1 1050 1904640 0 beta proteobacterium CB species 1 543913 206 0 1 206389 16955 0 22 Rhodocyclales order 295 12 Zoogloeaceae family 268 1 2008794 11632 0 5 Azoarcus 158 genus 1 4648 12960 0 no rank 2 0 2573 2629479 748247 1300 0 1 Azoarcus sp. KH32C species 0 198107 1273 1 species Azoarcus sp. CIB 0 913 2067960 species Azoarcus sp. SY39 1 0 418699 1004 species Azoarcus olearius 1 6 genus 209 Thauera 1 0 33057 6716 1296 1134435 0 Thauera humireducens species 1 2 no rank 0 3143 2609274 0 1606 85643 1 species Thauera sp. MZ1T species Thauera sp. K11 1 0 2005884 1537 Thauera chlorobenzoica species 1 1063 96773 0 Thauera aromatica species 1 1005 59405 0 3 Azonexaceae family 22 1 2008795 1000 0 1 0 978 73029 2 22 genus Dechloromonas 956 259537 0 1 Dechloromonas aromatica species 6 65 family Rhodocyclaceae 1 0 4028 75787 1 907 551759 0 2 Aromatoleum 45 genus 1 species Aromatoleum aromaticum 0 551760 862 0 75788 1049 1 no rank 1898103 1049 0 1 Rhodocyclaceae bacterium species 1 2007 146937 0 2 Azospira 43 genus species Azospira oryzae 1 0 1964 146939 0 14565 32003 1 109 order Nitrosomonadales 43 5 Sterolibacteriaceae 39 family 1 2272 2008793 0 2 genus 28 Methyloversatilis 1 0 378210 952 1 no rank 2639971 924 0 0 1842540 924 1 species Methyloversatilis sp. RAC08 1 1054211 1281 0 2 Sulfuritalea genus 35 748811 1246 0 1 Sulfuritalea hydrogenivorans species 0 1477 2772226 4 family Sulfuricella 12 genus 2 550 935200 0 1 0 538 649841 species Sulfuricella denitrificans 1 0 1778653 927 1 genus 14 Sulfuriferula 2 1 no rank 913 2637784 0 1985873 913 0 1 Sulfuriferula sp. AH1 species 0 32011 3507 1 family 28 Methylophilaceae 13 genus 2 0 1679002 407 1 Candidatus Methylopumilus turicensis species 1581680 180 0 1 Candidatus Methylopumilus planktonicus species 1581557 227 0 3 10 genus Methylovorus 1 0 1296 81682 0 702 266009 species Methylovorus glucosotrophus 1 0 584 2634027 1 no rank 887061 584 0 Methylovorus sp. MP688 species 1 1 0 16 456 2 genus 1 Methylophilus 455 2630143 0 no rank 1 Methylophilus sp. TWE2 species 1 455 1662285 0 3 Methylotenera genus 5 1 359407 723 0 0 352 1055487 1 species Methylotenera versatilis 359408 366 0 Methylotenera mobilis species 1 Methylobacillus 4 genus 2 597 404 0 1 1 Methylobacillus flagellatus species 593 405 0 5 33 family Gallionellaceae 1 0 1939 90627 16 genus Gallionella 2 0 739 96 1 species Gallionella capsiferriformans 1 0 723 370405 1 1167 314343 0 2 Sideroxydans 22 genus 1 species Sideroxydans lithotrophicus 0 1145 63745 3 family 7 Thiobacillaceae 1 0 2008790 658 2 Thiobacillus 15 genus 1 651 919 0 1 Thiobacillus denitrificans species 36861 636 0 1 0 206379 4603 12 family 37 Nitrosomonadaceae 1 0 35798 1684 4 genus 8 Nitrosospira 0 1288494 507 species Nitrosospira lacus 1 1 Nitrosospira multiformis species 428 1231 0 0 741 35799 species Nitrosospira briensis 1 7 Nitrosomonas 35 genus 1 2882 914 0 44574 506 0 1 Nitrosomonas communis species 0 915 489 species Nitrosomonas europaea 1 no rank 2 2609265 965 0 Nitrosomonas sp. AL212 species 1 153948 333 0 0 261292 632 1 species Nitrosomonas sp. Is79A3 423 916 0 1 Nitrosomonas eutropha species 464 44577 0 1 Nitrosomonas ureae species 0 119066 2225 no rank 11 1 genus 0 1301080 43 species Candidatus Nasuia deltocephalinicola 1 0 1160784 43 2 genus 31 Candidatus Accumulibacter 1 0 327159 1064 1 species Candidatus Accumulibacter phosphatis 0 327160 1033 0 1039 33055 1 9 genus Kinetoplastibacterium 6 species Candidatus Kinetoplastibacterium crithidii 1 0 148 33056 1 Candidatus Kinetoplastibacterium desouzaii species 994692 232 0 species Candidatus Kinetoplastibacterium galatii 1 0 994695 264 Kinetoplastibacterium blastocrithidii species 1 169 233181 0 species Candidatus Kinetoplastibacterium oncopeltii 1 0 217 994696 0 18 189384 genus 1 species Candidatus Tremblaya princeps 1 0 189385 18 1 genus 1381133 61 0 669502 61 0 Candidatus Profftella armatura species 1 195 subphylum 68525 214224 0 1 0 28221 128570 124 class 326 Deltaproteobacteria 23 order 464 Desulfovibrionales 1 0 213115 42339 17 family 236 Desulfovibrionaceae 1 0 194924 38224 0 2794998 1330 1 genus Desulfovibrio salexigens species 1 1330 880 0 4 Pseudodesulfovibrio 40 genus 1 5623 2035811 0 57320 1319 0 Pseudodesulfovibrio profundus species 1 1 Pseudodesulfovibrio aespoeensis species 182210 1844 0 Pseudodesulfovibrio indicus species 1 1716143 2420 0 1 28567 872 0 9 Desulfovibrio 220 genus 1124 2593640 0 1 no rank 1124 631220 0 Desulfovibrio sp. G11 species 1 1 Desulfovibrio fairfieldensis species 44742 10505 0 species Desulfovibrio alaskensis 1 0 58180 1616 0 184917 2259 1 species Desulfovibrio magneticus 0 580 1725232 species Candidatus Desulfovibrio trichonymphae 1 species Desulfovibrio vulgaris 1 0 4992 881 1 species Desulfovibrio desulfuricans 0 876 3535 1 Desulfovibrio piger species 3736 901 0 0 809 41707 genus 1 Lawsonia intracellularis species 1 29546 809 0 0 2582840 1659 1 genus 0 873 1659 1 species Desulfovibrio africanus 213116 3136 0 1 Desulfomicrobiaceae family 87 4 3 Desulfomicrobium genus 19 1 898 3049 0 species Desulfomicrobium orale 1 0 132132 1516 1 species Desulfomicrobium baculatum 0 899 1514 0 515 213117 family 1 1 genus 515 45662 0 1 species Desulfohalobium retbaense 0 515 45663 18 Desulfobacterales 132 order 1 10535 213118 0 Desulfobulbaceae family 19 8 213121 4704 0 1 genus 1 Desulfotalea 2 0 109168 821 1 84980 820 0 1 Desulfotalea psychrophila species 0 53318 992 1 genus 0 65555 992 1 species Desulfocapsa sulfexigens 2 9 genus Desulfobulbus 1 0 1509 893 0 1986146 1500 species Desulfobulbus sp. ORNL 1 Desulfurivibrio 35 genus 2 1363 427922 0 1 1328 427923 0 1 Desulfurivibrio alkaliphilus species 0 213119 5699 1 family 25 Desulfobacteraceae 9 0 28222 1096 1 genus 0 28223 1096 1 species Desulfobacula toluolica 2 5 genus Desulfatibacillum 1 0 1178 218207 0 1173 259354 species Desulfatibacillum alkenivorans 1 1 0 896 2215 3 genus 11 Desulfococcus 181663 1204 0 1 Desulfococcus oleovorans species Desulfococcus multivorans species 1 897 1000 0 1 0 2295 1185 2 genus 2 Desulfobacterium 1183 2296 0 Desulfobacterium autotrophicum species 1 0 29 40630 1 order 500 Myxococcales 38 0 80811 31350 suborder 26 9 Myxococcaceae 93 family 1 15497 31 0 1 0 5262 83461 3 111 genus Corallococcus 0 35 2464 species Myxococcus macrosporus 1 species Corallococcus coralloides 1 0 2687 184914 32 10142 0 1 Myxococcus genus 467 5 0 1297742 2066 species Myxococcus hansupus 1 0 1747 34 species Myxococcus xanthus 1 Myxococcus fulvus species 1 4084 33 0 1 Myxococcus stipitatus species 1778 83455 0 1 1095 1524213 0 3 Vulgatibacteraceae 25 family Vulgatibacter 39 genus 2 1070 1524214 0 1 0 1031 1391653 1 species Vulgatibacter incomptus 9 Archangiaceae 195 family 1 9064 39 0 Cystobacter genus 14 2 42 2200 0 1 0 2186 43 1 species Cystobacter fuscus 0 40 2032 1 genus 20 Stigmatella 2 2012 41 0 Stigmatella aurantiaca species 1 44 2046 0 1 Melittangium genus 22 2 1 Melittangium boletus species 83453 2024 0 2 Archangium genus 48 1 47 2591 0 48 2543 0 1 Archangium gephyra species 5 79 family Anaeromyxobacteraceae 1 0 5694 1524215 4 Anaeromyxobacter 205 genus 1 5615 161492 0 1 species Anaeromyxobacter dehalogenans 0 2618 161493 0 2792 2620896 2 no rank 1 Anaeromyxobacter sp. Fw109-5 species 1287 404589 0 447217 1505 0 Anaeromyxobacter sp. K species 1 suborder 3 224462 1814 0 3 family 19 Kofleriaceae 1 0 224464 1814 Haliangium genus 16 2 162027 1795 0 1 0 80816 1779 species Haliangium ochraceum 1 suborder 8 6966 80812 0 6 family Sandaracinaceae 3 0 1263 1055686 1 2 Sandaracinus genus 29 1 1055688 1257 0 0 927083 1228 species Sandaracinus amylolyticus 1 1 0 5703 49 5 50 family Polyangiaceae 4313 39643 0 1 Sorangium 37 genus 2 4276 56 0 Sorangium cellulosum species 1 1 1340 50 0 2 Chondromyces 24 genus 1316 52 0 1 Chondromyces crocatus species 1 213462 3389 0 10 Syntrophobacterales order 44 family 5 Syntrophaceae 6 0 213468 2350 1 1 0 667 60892 2 1 genus Desulfobacca 666 60893 0 Desulfobacca acetoxidans species 1 genus 12 Syntrophus 2 0 43773 899 1 Syntrophus aciditrophicus species 1 887 316277 0 0 779 2357 1 genus species Desulfomonile tiedjei 1 0 2358 779 995 213465 0 1 Syntrophobacteraceae 9 family 3 16 genus Syntrophobacter 2 0 986 29526 1 1 species Syntrophobacter fumaroxidans 0 119484 970 6 Desulfurellales order 1 1 213113 1210 0 117942 1209 0 1 Desulfurellaceae family 5 5 2 Desulfurella genus 5 1 33001 644 0 0 33002 639 1 species Desulfurella acetivorans 560 84404 0 1 Hippea 3 genus 2 0 557 84405 species Hippea maritima 1 0 2026 453227 1 23 order Desulfarculales 4 1 0 453228 2003 3 family 21 Desulfarculaceae 453229 1982 0 1 Desulfarculus genus 35 2 1 Desulfarculus baarsii species 1947 453230 0 Desulfuromonadales 338 order 24 28115 69541 0 1 9 family 154 Desulfuromonadaceae 1 0 213421 8647 Pelobacter genus 46 5 18 5470 0 1 1190 19 0 1 Pelobacter carbinolicus species 0 29542 1202 1 species Pelobacter acetylenicus no rank 1 880 2620299 0 0 1842532 880 1 species Pelobacter sp. SFB93 0 29543 2152 species Pelobacter propionicus 1 1 0 890 3023 3 genus 20 Desulfuromonas 1 Desulfuromonas soudanensis species 1397 1603606 0 1 no rank 1606 2614637 0 1 species Desulfuromonas sp. DDH964 0 1823759 1606 1 213422 19130 0 14 Geobacteraceae family 109 11 258 genus Geobacter 1 0 17517 28231 0 1623 345632 1 species Geobacter pickeringii 0 313985 1854 1 species Geobacter lovleyi 1 Geobacter sulfurreducens species 1493 35554 0 0 1086 1203471 species Geobacter daltonii 1 0 1263 351604 1 species Geobacter uraniireducens species Geobacter metallireducens 1 0 1241 28232 2 no rank 4826 2627627 0 1 Geobacter sp. M18 species 443143 2609 0 species Geobacter sp. M21 1 0 2217 443144 1 Geobacter anodireducens species 1340425 1567 0 1 species Geobacter bemidjiensis 0 225194 2306 0 1504 392332 1 11 genus Geoalkalibacter 2 1493 483547 0 1 Geoalkalibacter subterraneus species 71 Epsilonproteobacteria class 225 1 29547 85654 0 order 2873 Campylobacterales 66 0 213849 84283 1 0 2771472 2735 family 5 7 genus Sulfurovum 3 0 1973 265570 1 1113 2646778 0 no rank 1 Sulfurovum sp. NBC37-1 species 1 387093 1113 0 Sulfurovum lithotrophicum species 1 853 206403 0 1 762 269260 0 2 Nitratifractor 8 genus Nitratifractor salsuginis species 1 269261 754 0 1 0 72294 70486 41 family 5226 Campylobacteraceae no rank 5 0 2321108 4522 943 2321187 0 1 genus 0 1850254 943 1 species Arcobacter sp. LPB0137 no rank 1 0 2321207 1162 species Arcobacter sp. L 1 0 944547 1162 1 0 28196 2417 3 genus 53 Arcobacter Arcobacter nitrofigilis species 1 28199 870 0 1 species Arcobacter butzleri 0 28197 1494 Campylobacter genus 669 26 194 57233 0 1 0 366 28898 1 species Campylobacter helveticus 0 522485 438 species Campylobacter avium 1 1 species Campylobacter volucris 0 429 1031542 200 546 0 Campylobacter curvus species 1 1 species Campylobacter cuniculorum 0 529 374106 Campylobacter hominis species 1 76517 462 0 196 1522 0 Campylobacter fetus species 1 0 593 198 1 species Campylobacter hyointestinalis no rank 4 2593542 1409 0 Campylobacter sp. RM12175 species 1 258 1660076 0 1660073 314 0 Campylobacter sp. RM6137 species 1 1 Campylobacter sp. RM8964 species 328 1660074 0 1500960 509 0 1 Campylobacter sp. RM16704 species 0 821 199 1 species Campylobacter concisus Campylobacter insulaenigrae species 1 260714 383 0 Campylobacter coli species 1 195 28967 0 0 1230 206 species Campylobacter sputorum 1 species Campylobacter jejuni 1 0 197 11378 1244531 352 0 Campylobacter iguaniorum species 1 1 species Campylobacter lari 0 201 1649 Campylobacter pinnipediorum species 1 1965231 785 0 0 497724 453 1 species Campylobacter subantarcticus 1 Campylobacter peloridis species 558 488546 0 0 75658 2515 1 species Campylobacter lanienae species Campylobacter ureolyticus 1 0 622 827 0 557 824 species Campylobacter gracilis 1 1 0 3505 57665 9 42 genus Sulfurospirillum species Sulfurospirillum barnesii 1 0 44674 426 0 450 366522 1 species Sulfurospirillum cavolei 433 65553 0 1 Sulfurospirillum deleyianum species 0 382 66821 1 species Sulfurospirillum multivorans species Sulfurospirillum halorespirans 1 0 194424 322 0 1450 2618290 3 no rank Sulfurospirillum sp. JPD-1 species 1 220622 468 0 1 Sulfurospirillum sp. SL2-1 species 454 1986224 0 1581011 528 0 Sulfurospirillum sp. UCH001 species 1 1 6170 72293 0 14 Helicobacteraceae 32 family 23 genus Helicobacter 12 0 5732 209 1 no rank 1 2593540 265 0 species Helicobacter sp. MIT 01-6242 1 0 222136 265 1 species Helicobacter himalayensis 0 1591088 304 species Helicobacter hepaticus 1 0 545 32025 species Helicobacter felis 1 0 232 214 1 species Helicobacter cinaedi 0 213 390 366 217 0 1 Helicobacter mustelae species Helicobacter pylori species 1 2190 210 0 0 513 37372 1 species Helicobacter bilis 0 241 76936 1 species Helicobacter typhlonius 1 species Helicobacter cetorum 0 138563 480 species Helicobacter acinonychis 1 0 183 212 genus 1 0 406 843 0 406 844 species Wolinella succinogenes 1 family 5 0 2019 2771471 3 Sulfurimonas genus 6 1 202746 1598 0 Sulfurimonas autotrophica species 1 676 202747 0 0 916 39766 1 species Sulfurimonas denitrificans 0 286130 421 1 genus 1 Sulfuricurvum 2 1 species Sulfuricurvum kujiense 0 148813 420 4 5 order Nautiliales 1 0 1146 235899 224467 717 0 2 family genus 9 Nautilia 2 0 191291 717 1 Nautilia profundicola species 1 244787 708 0 0 2795691 424 1 family 0 269258 424 genus 1 1 no rank 424 2624044 0 387092 424 0 1 Nitratiruptor sp. SB155-2 species class 1879 Gammaproteobacteria 882 0 1236 751261 1 1 order Legionellales 20 0 7540 118969 1 Legionellaceae 9 family 14 6786 444 0 1 12 Legionella 15 genus 1 6481 445 0 1 species Legionella oakridgensis 0 446 29423 28087 637 0 Legionella sainthelensi species 1 Legionella longbeachae species 1 450 411 0 1867846 312 0 Legionella clemsonensis species 1 0 96230 448 1 species Legionella fallonii 1 species Legionella endosymbiont of Polyplax serrata 0 162 2005262 66969 580 0 Legionella waltersii species 1 0 2329 446 1 species Legionella pneumophila Legionella lansingensis species 1 352 45067 0 Legionella hackeliae species 1 355 449 0 Legionella spiritensis species 1 434 452 0 0 465 296 1 genus species Tatlockia micdadei 1 0 451 296 1 0 118968 753 5 family 1 Coxiellaceae 1 genus Coxiella 3 0 517 776 1 species Coxiella burnetii 1 0 387 777 0 2676648 129 no rank 1 129 325775 0 1 Coxiella endosymbiont of Amblyomma americanum species 1 no rank 0 235 134284 species Coxiella-like endosymbiont 1 0 235 1592897 1 91347 240850 0 242 Enterobacterales order 1029 1 0 39130 1903411 39 133 family Yersiniaceae 1 0 860 1745211 2 13 genus Chania 0 847 1639108 1 species Chania multitudinisentens 1171 genus Serratia 16 0 24832 613 1 species Serratia fonticola 1 0 2139 47917 1 Serratia plymuthica species 2146 82996 0 Serratia marcescens species 1 615 5710 0 8 no rank 2647522 8684 0 species Serratia sp. FGI94 1 0 671990 1271 species Serratia sp. AS13 1 0 768493 814 0 1758196 1094 species Serratia sp. SSNIH1 1 1 Serratia sp. SCBI species 1121 488142 0 0 104623 967 1 species Serratia sp. ATCC 39006 1 species Serratia sp. AS12 0 817 768490 1 Serratia sp. MYb239 species 1306 2033438 0 Serratia sp. FS14 species 1 1327989 1294 0 1 species Serratia ficaria 0 1422 61651 species Serratia proteamaculans 1 0 844 28151 61652 1500 0 1 Serratia rubidaea species 1 Serratia liquefaciens species 1216 614 0 4 Rahnella 120 genus 1 3171 34037 0 1 Rahnella aquatilis species 34038 1107 0 2 no rank 2635087 1944 0 0 1805933 896 1 species Rouxiella sp. ERMR1:05 0 741091 1048 species Rahnella sp. Y9602 1 Rouxiella genus 1 1565532 40 0 0 629 9303 1 genus 160 Yersinia 13 478 29485 0 Yersinia rohdei species 1 species Yersinia aldovae 1 0 473 29483 no rank 1 384 2653513 0 0 384 1839800 species Yersinia sp. FDAARGOS_228 1 Yersinia enterocolitica species 1 630 1941 0 0 755 263819 species Yersinia aleksiciae 1 3 species group 1649845 1805 0 1 species Yersinia pseudotuberculosis 0 772 633 632 524 0 1 Yersinia pestis species 509 367190 0 Yersinia similis species 1 542 29486 0 1 Yersinia ruckeri species species Yersinia intermedia 1 0 414 631 Yersinia kristensenii species 1 28152 541 0 1810 29484 0 1 Yersinia frederiksenii species 2 1 genus Gibbsiella 1 0 791 929812 0 790 929813 species Gibbsiella quercinecans 1 543 136638 0 1 Enterobacteriaceae family 1150 116 1 7407 413496 0 8 Cronobacter 226 genus 968 413497 0 Cronobacter dublinensis species 1 1 Cronobacter turicensis species 413502 694 0 1 Cronobacter muytjensii species 413501 974 0 0 413503 841 species Cronobacter malonaticus 1 885 1163710 0 1 Cronobacter condimenti species 535744 991 0 1 Cronobacter universalis species 1 Cronobacter sakazakii species 28141 1828 0 Cedecea genus 9 2 158483 3382 0 1 1 species Cedecea neteri 0 3373 158822 0 900 1335483 1 genus 1 species Shimwellia blattae 0 563 900 5 no rank 0 4387 36866 1 species Plautia stali symbiont 0 891974 948 species Enterobacteriaceae bacterium ENNIH2 1 0 796 1920109 1 species Enterobacteriaceae bacterium ENNIH1 0 2066051 843 908 1920128 0 Enterobacteriaceae bacterium ENNIH3 species 1 Enterobacteriaceae bacterium strain FGI 57 species 1 693444 892 0 544 17730 0 1 Citrobacter genus 682 14 2 no rank 0 1466 2644389 1920110 845 0 1 Citrobacter sp. CFNIH10 species 1 species Citrobacter sp. FDAARGOS_156 0 1702170 621 67824 901 0 Citrobacter farmeri species 1 species group 7 0 9517 1344959 67827 1568 0 Citrobacter werkmanii species 1 1 Citrobacter braakii species 1419 57706 0 1 Citrobacter freundii complex sp. CFNIH9 species 635 2077149 0 1 Citrobacter freundii complex sp. CFNIH4 species 745 2077148 0 Citrobacter freundii complex sp. CFNIH3 species 1 798 2077147 0 0 851 2066049 1 species Citrobacter freundii complex sp. CFNIH2 Citrobacter freundii species 1 3501 546 0 0 2467 35703 species Citrobacter amalonaticus 1 0 1664 545 1 species Citrobacter koseri 0 1033 67825 species Citrobacter rodentium 1 1 0 160674 3653 3 genus 37 Raoultella Raoultella planticola species 1 992 575 0 2624 54291 0 Raoultella ornithinolytica species 1 genus 1 0 165 401618 species Candidatus Riesia pediculicola 1 0 165 401619 2 genus 1 Candidatus Moranella 1 0 1048757 93 species Candidatus Moranella endobia 1 0 92 1048758 4 genus 134 Shigella 1 0 620 2309 0 622 907 species Shigella dysenteriae 1 no rank 1 717 2629414 0 717 1813821 0 1 Shigella sp. PAMC 28760 species Shigella flexneri species 1 623 551 0 0 16876 561 1 110 genus Escherichia 5 Escherichia albertii species 1 208962 1656 0 0 562 13475 species Escherichia coli 1 Escherichia marmotae species 1 874 1499973 0 species Escherichia fergusonii 1 0 564 761 1330545 3278 0 1 Lelliottia genus 46 4 species Lelliottia nimipressuralis 1 0 1070 69220 0 1398 61646 species Lelliottia amnigena 1 0 764 1907578 1 species Lelliottia jeotgali 570 28486 0 1 Klebsiella genus 812 10 Klebsiella pneumoniae species 1 573 10290 0 no rank 2 2372 2608929 0 0 1905288 1094 1 species Klebsiella sp. LTGPAF-6F 1 Klebsiella sp. M5al species 1934254 1278 0 0 244366 3298 1 species Klebsiella variicola 548 1959 0 Klebsiella aerogenes species 1 0 1444 1463165 species Klebsiella quasipneumoniae 1 species Klebsiella quasivariicola 1 0 1130 2026240 species Klebsiella michiganensis 1 0 2526 1134687 0 571 4655 1 species Klebsiella oxytoca Leclercia 123 genus 4 3564 83654 0 1 Leclercia adecarboxylata species 1 83655 1283 0 0 2627398 2158 no rank 2 0 1920114 938 1 species Leclercia sp. LSNIH1 species Leclercia sp. LSNIH3 1 0 1920116 1220 22 1346 genus Enterobacter 1 0 25755 547 0 2608935 6361 9 no rank Enterobacter sp. ODB01 species 1 1827481 683 0 0 932 1166130 species Enterobacter sp. R4-368 1 1977566 450 0 Enterobacter sp. Crenshaw species 1 1560339 479 0 Enterobacter sp. E20 species 1 1 Enterobacter sp. FY-07 species 1692238 868 0 0 2051905 805 1 species Enterobacter sp. CRENT-193 species Enterobacter sp. HK169 1 0 1868135 534 999 1914861 0 1 Enterobacter sp. SA187 species 399742 611 0 1 Enterobacter sp. 638 species 0 18048 354276 12 species group 1 Enterobacter cancerogenus species 69218 753 0 1 Enterobacter kobei species 208224 635 0 3817 158836 0 1 Enterobacter hormaechei 2289 species 3 1 Enterobacter xiangfangensis subspecies 642 1296536 0 886 1812934 0 1 Enterobacter cloacae complex 'Hoffmann cluster III' subspecies species Enterobacter asburiae 1 0 2611 61645 1 species Enterobacter cloacae complex 'Hoffmann cluster IV' 0 1812935 594 2757714 1858 0 no rank 3 1 Enterobacter cloacae complex sp. ECNIH7 species 1915310 472 0 1 Enterobacter cloacae complex bacterium species 2027919 611 0 0 2077137 775 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 Enterobacter ludwigii species 1 299767 711 0 species Enterobacter cloacae 1 0 7069 550 5 Kosakonia 46 genus 1 4006 1330547 0 1305 208223 0 1 Kosakonia cowanii species species Kosakonia sacchari 1 0 727 1158459 0 1018 283686 species Kosakonia radicincitans 1 910 497725 0 Kosakonia oryzae species 1 590 6508 0 1 Salmonella genus 36 3 Salmonella enterica species 1 28901 5718 0 0 54736 754 species Salmonella bongori 1 579 894 0 genus 1 0 894 61648 species Kluyvera intermedia 1 191675 2443 0 17 no rank 84563 2443 0 17 clade 5 genus Candidatus Tachikawaea 2 0 343 1682492 1 1 Candidatus Tachikawaea gelatinosa species 338 1410383 0 1 genus 111 1906660 0 Candidatus Mikella endobia species 1 1778264 111 0 clade 7 0 889 84564 Candidatus Blochmannia genus 2 7 203804 889 0 1 1 species Candidatus Blochmannia chromaiodes 0 251542 153 no rank 2 0 711328 286 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 1 75 1505596 0 0 211 1505597 1 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 101534 141 1 species Candidatus Blochmannia pennsylvanicus 1 Candidatus Blochmannia floridanus species 203907 184 0 1 Candidatus Blochmannia vafer species 123 251535 0 clade 3 538 146507 0 0 134287 120 species secondary endosymbiont of Heteropsylla cubana 1 176 568987 0 1 genus 176 138072 0 Candidatus Hamiltonella defensa species 1 1199245 242 0 secondary endosymbiont of Ctenarytaina eucalypti species 1 genus 1 0 1906657 121 0 1778262 121 1 species Candidatus Doolittlea endobia clade 1 129 199891 0 1835721 129 0 secondary endosymbiont of Trabutina mannipara species 1 1906661 207 0 1 genus 1070130 207 0 Candidatus Gullanella endobia species 1 genus 1 0 1906659 105 1778263 105 0 Candidatus Hoaglandella endobia species 1 0 1330546 3502 1 genus 29 Pluralibacter 3 1275 1334193 0 [Enterobacter] lignolyticus species 1 0 61647 2198 species Pluralibacter gergoviae 1 0 150 409304 genus 1 species Candidatus Ishikawaella capsulata 1 0 168169 150 20 family 55 Pectobacteriaceae 1 0 1903410 18821 6760 122277 0 1 Pectobacterium 175 genus 6 1 Pectobacterium atrosepticum species 904 29471 0 Pectobacterium carotovorum species 1 2799 554 0 1 Pectobacterium parmentieri species 833 1905730 0 845 55208 0 Pectobacterium wasabiae species 1 1204 2042057 0 Pectobacterium polaris species 1 1 2654 84565 0 5 Sodalis 67 genus Sodalis endosymbiont of Henestaris halophilus species 1 1929246 126 0 63612 662 0 Sodalis glossinidius species 1 0 1486991 848 species Candidatus Sodalis pierantonius 1 species Sodalis praecaptivus 1 0 1239307 951 2 Brenneria 12 genus 1 1081 71655 0 0 1109412 1069 species Brenneria goodwinii 1 Dickeya 291 genus 6 8271 204037 0 1 1 Dickeya dianthicola species 1174 204039 0 1 species Dickeya solani 0 2430 1089444 0 1591 204042 1 species Dickeya zeae 204038 1478 0 1 Dickeya dadantii species 1 species Dickeya fangzhongdai 0 1778540 1307 9969 1903412 0 1 Hafniaceae 28 family 14 8 464 genus Edwardsiella 1 0 7122 635 0 1821960 749 1 species Edwardsiella anguillarum 1 Edwardsiella tarda species 636 1606 0 1263550 986 0 Edwardsiella piscicida species 1 Edwardsiella hoshinae species 1 743 93378 0 no rank 2 2676541 1781 0 1 Edwardsiella sp. LADL05-105 species 767 1650654 0 1014 1578828 0 1 Edwardsiella sp. EA181011 species 793 67780 0 1 Edwardsiella ictaluri species Obesumbacterium genus 7 2 82982 678 0 1 671 82983 0 1 Obesumbacterium proteus species 3 Hafnia 33 genus 1 2141 568 0 1 Hafnia alvei species 1510 569 0 no rank 1 0 2621980 598 species Hafnia sp. CBA7124 1 0 1848580 598 0 1903416 574 2 family Pragia genus 5 2 82984 574 0 1 569 82985 0 1 Pragia fontium species 0 1558 451511 no rank 2 Plesiomonas 75 genus 2 1558 702 0 1 1483 703 0 Plesiomonas shigelloides species 1 21 Morganellaceae family 59 1 1903414 11301 0 1 1692 581 0 2 Morganella 31 genus 0 1661 582 1 species Morganella morganii genus 14 Proteus 3 0 583 1516 1 1 species Proteus mirabilis 0 584 874 0 628 585 1 species Proteus vulgaris 586 1826 0 1 Providencia genus 25 4 1 Providencia alcalifaciens species 126385 536 0 0 411 587 species Providencia rettgeri 1 Providencia stuartii species 1 854 588 0 3752 626 0 1 Xenorhabdus 25 genus 6 1 Xenorhabdus poinarii species 40577 567 0 1 species Xenorhabdus nematophila 0 628 937 1 species Xenorhabdus doucetiae 0 545 351671 0 1182 40576 1 species Xenorhabdus bovienii 351679 496 0 1 Xenorhabdus hominickii species 0 328 637 1 genus 1 Arsenophonus symbiont of Lipoptena fortisetosa species 634113 328 0 4 28 genus Photorhabdus 1 0 2128 29487 species Photorhabdus temperata 1 0 718 574560 species Photorhabdus luminescens 1 0 665 29488 0 717 291112 1 species Photorhabdus asymbiotica 0 21830 1903409 1 88 family Erwiniaceae 27 11 Pantoea genus 437 1 53335 10515 0 Pantoea rwandensis species 1 815 1076550 0 470934 1831 0 1 Pantoea vagans species 1 species Pantoea alhagi 0 890 1891675 1 Candidatus Pantoea carbekii species 235 1235990 0 0 66269 613 species Pantoea stewartii 1 3166 2630326 0 3 no rank 1194 1484157 0 1 Pantoea sp. PSNIH2 species species Pantoea sp. PSNIH1 1 0 1484158 883 species Pantoea sp. At-9b 1 0 1089 592316 0 553 925 species Pantoea ananatis 1 species group 1 1603 1654067 0 Pantoea agglomerans species 1 1603 549 0 0 32199 2467 1 genus 0 9 2467 1 species Buchnera aphidicola 551 5020 0 1 Erwinia genus 111 8 79967 486 0 1 Erwinia pyrifoliae species 182337 932 0 Erwinia billingiae species 1 750 2622719 0 1 no rank species Erwinia sp. Ejp617 1 0 215689 750 0 620 552 1 species Erwinia amylovora 0 1619313 1088 1 species Erwinia gerundensis 1 species Candidatus Erwinia sp. ErCipseudotaxifoliae 0 228 1922217 0 805 338565 species Erwinia tasmaniensis 1 2 Wigglesworthia 10 genus 1 439 51228 0 429 51229 0 1 Wigglesworthia glossinidia species 1 82986 861 0 2 Tatumella genus 60 Tatumella citrea species 1 53336 801 0 2440 2100764 0 2 genus 1 Pantoea calida species 665913 1247 0 0 1193 665914 species Pantoea gaviniae 1 135615 291 0 order 3 Cardiobacteriaceae family 1 3 868 291 0 1 1 290 869 0 2 Dichelobacter 1 genus Dichelobacter nodosus species 1 289 870 0 129 663 order Pseudomonadales 1 0 154395 72274 0 131179 135621 1 869 family Pseudomonadaceae 86 subfamily 3 3472 351 0 Azotobacter 25 genus 3 3472 352 0 1 354 1340 0 Azotobacter vinelandii species 1 1 species Azotobacter chroococcum 0 353 2107 2 genus Oblitimonas 2 0 483 1849530 1 0 481 1697053 1 species Oblitimonas alkaliphila 1 0 286 126355 80 genus 4395 Pseudomonas Pseudomonas cerasi species 1 1583341 710 0 0 930166 1933 1 species Pseudomonas brassicacearum Pseudomonas alcaliphila species 1 101564 2035 0 1 species Pseudomonas alkylphenolica 0 237609 959 Pseudomonas koreensis species 1 1715 198620 0 136843 16637 0 9 species group 76758 685 0 1 Pseudomonas orientalis species 0 742 75612 1 species Pseudomonas mandelii 76761 775 0 1 Pseudomonas veronii species 0 47879 784 species Pseudomonas corrugata 1 0 9236 294 species Pseudomonas fluorescens 1 1 Pseudomonas trivialis species 856 200450 0 species Pseudomonas poae 1 0 779 200451 0 47878 1285 1 species Pseudomonas azotoformans species Pseudomonas protegens 1 0 380021 1495 1 Pseudomonas antarctica species 219572 541 0 0 764 312306 species Pseudomonas entomophila 1 0 829 1853130 species Pseudomonas silesiensis 1 136842 5788 0 2 species group Pseudomonas chlororaphis species 1 4592 587753 0 1 Pseudomonas fragi species 296 1196 0 species group 6 136841 16557 0 1 species Pseudomonas alcaligenes 0 43263 1256 1 Pseudomonas mendocina species 4125 300 0 1232139 1422 0 1 species subgroup 1 Pseudomonas furukawaii species 1149133 1422 0 1 species Pseudomonas citronellolis 0 3055 53408 0 1236 53412 species Pseudomonas resinovorans 1 Pseudomonas aeruginosa species 1 5463 287 0 no rank 30 0 196821 26439 1 Pseudomonas sp. LH1G9 species 2083055 863 0 1 species Pseudomonas sp. MRSN12121 0 977 1611770 0 999 1028989 species Pseudomonas sp. StFLB209 1 1 species Pseudomonas sp. SWI44 0 2083053 788 1856685 1110 0 1 Pseudomonas sp. TCU-HL1 species species Pseudomonas sp. VLB120 1 0 69328 764 1 Pseudomonas sp. PONIH3 species 1636610 917 0 0 2083054 684 species Pseudomonas sp. LG1D9 1 1 Pseudomonas sp. CCOS 191 species 1649877 975 0 0 1981174 475 1 species Pseudomonas sp. M30-35 1898684 981 0 Pseudomonas sp. LPH1 species 1 1 species Pseudomonas sp. UW4 0 1207075 672 947 1259844 0 Pseudomonas sp. FGI182 species 1 1 species Pseudomonas sp. URMO17WK12:I11 0 1283291 1280 712 2083051 0 Pseudomonas sp. SWI6 species 1 1 species Pseudomonas sp. MYb193 0 1827300 602 0 1207 1500687 species Pseudomonas sp. St29 1 1 Pseudomonas sp. S-6-2 species 723 1931241 0 0 2049589 715 species Pseudomonas sp. HLS-6 1 species Pseudomonas sp. NC02 1 0 1023 2067572 Pseudomonas sp. DR 5-09 species 1 1033 1534110 0 1294143 1354 0 1 Pseudomonas sp. ATCC 13867 species species Pseudomonas sp. Os17 1 0 1233 1500686 1415630 686 0 1 Pseudomonas sp. TKP species 0 905 2083052 1 species Pseudomonas sp. SWI36 1 species Pseudomonas sp. XWY-1 0 791 2069256 species Pseudomonas sp. GR 6-02 1 0 1659194 588 0 1338689 897 species Pseudomonas sp. JY-Q 1 1 Pseudomonas sp. FDAARGOS_380 species 2018067 758 0 species Pseudomonas sp. CC6-YY-74 1 0 780 1930532 157783 676 0 1 Pseudomonas cremoricolorata species 1280 65741 0 1 Pseudomonas knackmussii species 793 216142 0 Pseudomonas rhizosphaerae species 1 0 11912 136849 8 species group 946 33069 0 1 Pseudomonas viridiflava species species Pseudomonas cichorii 1 0 36746 853 251695 4903 0 species subgroup 1 1 species Pseudomonas syringae 0 317 4903 2 species subgroup 251698 2380 0 0 47877 1144 species Pseudomonas amygdali 1 1 species Pseudomonas savastanoi 0 1236 29438 0 1452 251701 species Pseudomonas syringae group genomosp. 3 1 0 46257 776 1 species Pseudomonas avellanae 602 2775504 0 no rank 1 Pseudomonas sp. Lz4W species 1 602 1206777 0 1 species Pseudomonas versuta 0 617 1788301 1339 157782 0 Pseudomonas parafulva species 1 18368 136845 0 6 species group Pseudomonas plecoglossicida species 1 720 70775 0 303 10675 0 1 Pseudomonas putida species Pseudomonas monteilii species 1 2317 76759 0 1 Pseudomonas mosselii species 78327 1904 0 0 1498 47880 species Pseudomonas fulva 1 0 47885 1254 species Pseudomonas oryzihabitans 1 0 104087 1995 species Pseudomonas frederiksbergensis 1 0 136846 8072 2 species group 1 Pseudomonas balearica species 1083 74829 0 0 6989 578833 1 species subgroup Pseudomonas stutzeri species 1 6989 316 0 1 species Pseudomonas psychrotolerans 0 237610 1332 0 669 244566 species Pseudomonas lurida 1 1 0 468 22553 42 family 82 Moraxellaceae 0 475 2354 1 genus 10 Moraxella 5 Moraxella catarrhalis species 1 480 491 0 387 29433 0 1 Moraxella ovis species species Moraxella bovoculi 1 0 386891 654 0 34062 812 1 species Moraxella osloensis genus 188 Acinetobacter 25 0 469 16330 1 0 1324350 564 1 species Acinetobacter equi 682 756892 0 Acinetobacter indicus species 1 1 species 202950 564 0 1 strain Acinetobacter sp. ADP1 0 564 62977 40214 441 0 1 Acinetobacter johnsonii species 1 Acinetobacter junii species 777 40215 0 species Acinetobacter soli 1 0 487316 494 0 756 108981 1 species Acinetobacter schindleri 0 196816 2989 no rank 7 0 1808001 575 species Acinetobacter sp. LoGeW2-3 1 1 Acinetobacter sp. SWBY1 species 2079596 329 0 1407071 442 0 1 Acinetobacter sp. TGL-Y2 species 495 1608473 0 Acinetobacter sp. NCu2D-2 species 1 Acinetobacter sp. TTH0-4 species 1 365 1646498 0 0 565 1636603 species Acinetobacter sp. ACNIH1 1 218 1758189 0 1 Acinetobacter sp. ACNIH2 species 0 909768 6145 species group 5 1 Acinetobacter pittii species 48296 1554 0 0 1785128 434 species Acinetobacter lactucae 1 0 470 2236 species Acinetobacter baumannii 1 726 106654 0 1 Acinetobacter nosocomialis species 471 1195 0 Acinetobacter calcoaceticus species 1 0 543 40216 1 species Acinetobacter radioresistens 1 Acinetobacter larvae species 1789224 322 0 636 1148157 0 Acinetobacter oleivorans species 1 507 29430 0 1 Acinetobacter haemolyticus species 0 722 106648 species Acinetobacter bereziniae 1 11 Psychrobacter 28 genus 1 3787 497 0 0 2256 196806 6 no rank 0 395 349106 1 species Psychrobacter sp. PRwf-1 571800 223 0 1 Psychrobacter sp. G species 321 1028416 0 1 Psychrobacter sp. DAB_AL43B species Psychrobacter sp. AntiMn-1 species 1 1720344 551 0 387 1699624 0 Psychrobacter sp. P11G5 species 1 0 379 1699622 1 species Psychrobacter sp. P2G3 Psychrobacter urativorans species 1 45610 254 0 404 261164 0 1 Psychrobacter alimentarius species 330922 335 0 Psychrobacter cryohalolentis species 1 0 334543 510 1 species Psychrobacter arcticus 1 24321 135613 0 52 Chromatiales 361 order 1 1676141 904 0 3 Wenzhouxiangellaceae family 18 2 35 genus Wenzhouxiangella 1 0 886 1676142 species Wenzhouxiangella marina 1 0 1579979 851 Chromatiaceae family 145 18 1046 9771 0 1 2 Allochromatium 24 genus 1 1566 85072 0 species Allochromatium vinosum 1 0 1542 1049 1 156885 904 0 2 Thioflavicoccus genus 15 80679 889 0 Thioflavicoccus mobilis species 1 2186 53392 0 1 Thiodictyon 26 genus 2 1 Candidatus Thiodictyon syntrophicum species 2160 1166950 0 4 Nitrosococcus genus 2 1 1227 928 0 species Nitrosococcus halophilus 1 0 133539 373 329 473531 0 Nitrosococcus watsonii species 1 1 Nitrosococcus oceani species 1229 224 0 1 no rank 0 82569 1095 species Chromatiaceae bacterium 2141T.STBD.0c.01a 1 0 1095 1978339 1 0 1305 13724 2 21 genus Thiocystis Thiocystis violascens species 1 1284 73141 0 2 genus 55 Marichromatium 1 0 85076 1447 1 species Marichromatium purpuratum 0 1392 37487 1 1980513 195 0 2 Candidatus Nitrosoglobus genus 1 Candidatus Nitrosoglobus terrae species 1 194 1630141 0 0 451214 1238 no rank 2 25 genus Thiohalobacter 2 0 1238 1273155 1 585455 1213 0 1 Thiohalobacter thiocyanaticus species 1 0 9367 72276 18 135 family Ectothiorhodospiraceae 2 Alkalilimnicola genus 23 1 133193 1001 0 Alkalilimnicola ehrlichii species 1 351052 978 0 3 Spiribacter genus 15 1 1335745 980 0 Spiribacter curvatus species 1 477 1335757 0 488 1335746 0 1 Spiribacter salinus species 0 1031 85108 1 9 genus Halorhodospira 2 0 1022 1053 species Halorhodospira halophila 1 2 genus 2 Ectothiorhodospira 1 0 1051 1217 1 no rank 1215 2684909 0 1215 1442136 0 1 Ectothiorhodospira sp. BSL-9 species Acidihalobacter genus 23 2 1765964 739 0 1 0 160660 716 1 species Acidihalobacter prosperus 6 Thioalkalivibrio genus 97 1 106633 4264 0 2621013 640 0 no rank 1 1 Thioalkalivibrio sp. K90mix species 396595 640 0 species Thioalkalivibrio paradoxus 1 0 108010 597 106634 930 0 1 Thioalkalivibrio versutus species 186931 483 0 1 Thioalkalivibrio nitratireducens species 1517 1033854 0 1 Thioalkalivibrio sulfidiphilus species 1 255526 1237 0 4 Halothiobacillaceae family 32 0 109262 1205 1 genus 12 Halothiobacillus 3 no rank 1 2636392 633 0 0 633 1860122 species Halothiobacillus sp. LS2 1 927 560 0 1 Halothiobacillus neapolitanus species 0 1738654 568 1 family 1 Woeseiaceae 3 4 genus Woeseia 2 0 567 1738655 1 563 1548547 0 Woeseia oceani species 1 11 family Granulosicoccaceae 3 0 875 449719 1 2 Granulosicoccus 5 genus 1 864 437504 0 1 Granulosicoccus antarcticus species 437505 859 0 0 54381 135614 1 576 order Xanthomonadales 53 38 Xanthomonadaceae family 583 1 32033 44160 0 Luteimonas genus 12 2 83614 792 0 1 780 2006110 0 Luteimonas sp. 100111 species 1 0 338 17194 1 genus 1056 Xanthomonas 17 347 1454 0 Xanthomonas oryzae species 1 442694 741 0 1 Xanthomonas perforans species 0 456327 701 1 species Xanthomonas euvesicatoria Xanthomonas hortorum species 1 735 56454 0 Xanthomonas alfalfae species 1 366650 637 0 563 29447 0 Xanthomonas albilineans species 1 1 Xanthomonas phaseoli species 1985254 596 0 0 1532 343 1 species Xanthomonas translucens 0 53413 550 1 species Xanthomonas axonopodis 577 56459 0 Xanthomonas vasicola species 1 1 species Xanthomonas campestris 0 2371 339 0 56458 1219 species Xanthomonas sacchari 1 48664 678 0 Xanthomonas fragariae species 1 0 56460 971 species Xanthomonas vesicatoria 1 2 species group 0 643453 2813 0 346 2132 species Xanthomonas citri 1 Xanthomonas fuscans species 1 366648 681 0 Pseudoxanthomonas genus 51 3 83618 3313 0 1 1 species Pseudoxanthomonas suwonensis 0 2262 314722 species Pseudoxanthomonas spadix 1 0 1000 415229 2370 773 0 genus 1 1 species Xylella fastidiosa 0 2371 773 0 40323 15820 1 genus 400 Stenotrophomonas 9 128780 1945 0 1 Stenotrophomonas acidaminiphila species 0 83617 981 1 species Stenotrophomonas nitritireducens Stenotrophomonas rhizophila species 1 1140 216778 0 0 4112 196198 no rank 4 0 1904944 1034 1 species Stenotrophomonas sp. LM091 1 Stenotrophomonas sp. KCTC 12332 species 938 1793721 0 0 1080 1827305 species Stenotrophomonas sp. MYb57 1 1 Stenotrophomonas sp. WZN-1 species 1060 2005046 0 995085 7242 0 species group 1 0 40324 7242 1 species Stenotrophomonas maltophilia Lysobacter genus 111 5 68 5685 0 1 1 species Lysobacter gummosus 0 1164 262324 1584 435897 0 1 Lysobacter capsici species 0 84531 1648 species Lysobacter antibioticus 1 1 Lysobacter enzymogenes species 1178 69 0 1 0 9645 1775411 14 167 family Rhodanobacteraceae 1 0 242605 912 2 genus 13 Luteibacter 0 899 242606 species Luteibacter rhizovicinus 1 0 4205 231454 1 98 genus Dyella 4 1 Dyella thiooxydans species 445710 1428 0 Dyella japonica species 1 1525 231455 0 0 1379159 1154 species Dyella jiangningensis 1 2 Frateuria genus 14 1 70411 1176 0 1 species Frateuria aurantia 0 81475 1162 1 0 1197 323413 2 11 genus Dokdonella 323415 1186 0 1 Dokdonella koreensis species Rhodanobacter genus 13 2 75309 1378 0 1 species Rhodanobacter denitrificans 1 0 1365 666685 1 genus 0 610 2233801 0 610 2021234 1 species Xanthomonadales bacterium D13 0 1692040 1923 1 order 51 Acidiferrobacterales 6 1 1872 1692041 0 5 Acidiferrobacteraceae 40 family 1 0 1149 1744881 2 17 genus Sulfuricaulis Sulfuricaulis limicola species 1 1620215 1132 0 2 Sulfurifustis 11 genus 1 683 1692042 0 1675686 672 0 Sulfurifustis variabilis species 1 1 135619 32148 0 70 Oceanospirillales order 340 6 Kangiellaceae family 12 1 1920240 1712 0 0 261963 1700 1 genus 25 Kangiella 5 1561924 376 0 1 Kangiella profundi species 261964 512 0 1 Kangiella koreensis species 1 Kangiella sediminilitoris species 466 1144748 0 0 321 914150 species Kangiella geojedonensis 1 family 44 Alcanivoracaceae 9 0 224372 4630 1 59753 3896 0 1 Alcanivorax genus 71 6 1 Alcanivorax pacificus species 1306787 1195 0 no rank 1 0 2638842 369 species Alcanivorax sp. NBRC 101098 1 0 1113728 369 285091 965 0 Alcanivorax dieselolei species 1 1094342 959 0 1 Alcanivorax xenomutans species 0 59754 337 1 species Alcanivorax borkumensis 1 0 2025617 690 2 genus 9 Ketobacter 0 1917421 681 1 species Ketobacter alkanivorans 29 family Oceanospirillaceae 13 0 4170 135620 1 genus 10 Marinomonas 4 0 28253 1368 1 1 species Marinomonas mediterranea 0 366 119864 1 no rank 518 196814 0 0 400668 518 species Marinomonas sp. MWYL1 1 species Marinomonas posidonica 1 0 936476 474 581 188907 0 1 Oleispira 1 genus 2 0 580 188908 species Oleispira antarctica 1 1 48075 1259 0 2 Marinobacterium genus 19 species Marinobacterium aestuarii 1 0 1240 1821621 Bacterioplanes 2 genus 2 543 1537406 0 1 Bacterioplanes sanyensis species 1 1249553 541 0 2 1 genus Thalassolituus 1 0 390 187492 0 187493 389 1 species Thalassolituus oleivorans 0 1417 255527 1 5 family Saccharospirillaceae 5 2 Gynuella 6 genus 1 879 1445504 0 0 1445505 873 1 species Gynuella sunshinyii Reinekea 2 genus 2 533 230494 0 1 1336806 531 0 1 Reinekea forsetii species 18380 28256 0 1 Halomonadaceae 287 family 30 3 no rank 114403 268 0 235572 81 0 genus 1 species Candidatus Portiera aleyrodidarum 1 0 91844 81 1 genus 0 1495768 147 Candidatus Evansia muelleri species 1 147 1495769 0 1 genus 0 40 114185 Candidatus Carsonella ruddii species 1 40 114186 0 204286 1345 0 1 Cobetia genus 14 2 1331 28258 0 Cobetia marina species 1 Salinicola 33 genus 2 1154 404432 0 1 1 Salinicola tamaricis species 1121 1771309 0 Chromohalobacter genus 7 2 42054 808 0 1 Chromohalobacter salexigens species 1 801 158080 0 genus 20 Halotalea 2 0 376488 923 1 species Halotalea alkalilenta 1 0 376489 903 0 2167 504090 1 23 genus Kushneria 3 1156 698828 0 Kushneria konosiri species 1 1 species Kushneria marisflavi 0 988 157779 0 11428 2745 1 211 genus Halomonas 15 species Halomonas hydrothermalis 1 0 881 115561 Halomonas chromatireducens species 1 507626 977 0 0 2609666 5654 8 no rank 1 species Halomonas sp. 'Soap Lake #7' 0 476 1962264 0 393 1971364 1 species Halomonas sp. GT 1504981 643 0 Halomonas sp. KO116 species 1 476 1949203 0 Halomonas sp. 'Soap Lake #6' species 1 1 species Halomonas sp. R57-5 0 793 1610576 1 species Halomonas sp. SF2003 0 938 2136172 1345 1883416 0 Halomonas sp. 1513 species 1 1118153 590 0 Halomonas sp. GFAJ-1 species 1 213554 462 0 1 Halomonas campaniensis species 475662 1435 0 1 Halomonas beimenensis species 1 Halomonas huangheensis species 1178482 864 0 Halomonas aestuarii species 1 944 1897729 0 Oleiphilaceae family 12 3 191033 548 0 1 2 Oleiphilus 13 genus 1 536 141450 0 1 Oleiphilus messinensis species 141451 523 0 1 224379 951 0 3 Hahellaceae family 4 genus 8 Hahella 2 0 158481 947 1 939 158327 0 Hahella chejuensis species 1 3 order 0 877 1775403 1 Sinobacteraceae family 6 568386 0 871 2689614 0 family 2 Steroidobacter 4 genus 2 871 469322 0 1 1 species Steroidobacter denitrificans 0 465721 867 32 order 9 Thiotrichales 1 0 72273 13092 family 24 Francisellaceae 15 0 34064 7945 1 1 0 1869285 472 2 genus 2 Allofrancisella 594679 470 0 Allofrancisella guangzhouensis species 1 Francisella 64 genus 12 7449 262 0 1 517 549298 0 Francisella halioticida species 1 0 829 1542390 1 species Francisella sp. CA97-1460 1 species Francisella sp. TX077310 0 510 573570 1 Francisella philomiragia species 888 28110 0 398 622488 0 Francisella hispaniensis species 1 0 954 743 1 species Francisella persica 263 1482 0 1 Francisella tularensis species Francisella noatunensis species 1 627 657445 0 2 no rank 2610885 914 0 1 Francisella sp. MA067296 species 394 475375 0 1 species Francisella sp. FSC1006 0 1547445 520 Francisella sp. TX077308 species 1 477 573569 0 30 family Piscirickettsiaceae 14 0 4170 135616 1 4 5 genus Cycloclasticus 1 0 935 34067 2 no rank 581 2621467 0 1 species Cycloclasticus sp. P1 0 248 385025 species Cycloclasticus sp. PY97N 1 0 333 728003 0 349 1329899 1 species Cycloclasticus zancles genus 1 0 1237 656 0 1238 656 species Piscirickettsia salmonis 1 1 544 28884 0 2 Hydrogenovibrio 4 genus 1 Hydrogenovibrio crunogenus species 540 39765 0 1 0 933 822 3 genus 5 Thiomicrospira 0 92245 409 1 species Thiomicrospira aerophila 1 Thiomicrospira cyclica species 147268 408 0 5 genus Methylophaga 3 0 1183 40222 1 1 Methylophaga nitratireducenticrescens species 734 754476 0 444 754477 0 1 Methylophaga frappieri species 2 family 968 135617 0 0 40751 402 1 genus 1 species Thioploca ingrica 0 40754 402 0 1021 566 1 genus 0 288004 566 species Beggiatoa leptomitoformis 1 29 Cellvibrionales order 60 1 1706369 10374 0 4 Halieaceae 20 family 1 1313 1706372 0 1 0 1217416 1293 3 genus 17 Halioglobus species Halioglobus japonicus 1 0 930805 534 species Halioglobus pacificus 1 0 930806 742 12 family 23 Cellvibrionaceae 1 0 1706371 4975 1 0 885 447467 2 3 genus Simiduia 0 882 447471 1 species Simiduia agarivorans 0 545 2036021 1 13 genus Agarilytica 2 1737490 532 0 1 Agarilytica rhodophyticola species genus 23 Cellvibrio 4 0 10 2306 1 Cellvibrio japonicus species 1 724 155077 0 0 1559 2624793 no rank 2 Cellvibrio sp. PSBB023 species 1 758 1945512 0 0 801 1987723 1 species Cellvibrio sp. PSBB006 1 0 2425 656 2 genus 9 Teredinibacter 0 647 2426 1 species Teredinibacter turnerae genus 1 0 560 316625 Saccharophagus degradans species 1 560 86304 0 8 family Spongiibacteraceae 7 0 1317 1706375 1 1 0 630749 438 2 genus 3 Spongiibacter 2631504 435 0 no rank 1 1620392 435 0 1 Spongiibacter sp. IMCC21906 species 465 1084558 0 1 Oceanicoccus 6 genus 2 459 716816 0 1 Oceanicoccus sagamiensis species 0 406 1434050 1 6 genus Zhongshania 2 400 1470434 0 1 Zhongshania aliphaticivorans species Microbulbiferaceae 23 family 5 2709 1706373 0 1 4 24 genus Microbulbifer 1 0 2686 48073 0 1769779 789 species Microbulbifer aggregans 1 260552 1056 0 1 Microbulbifer agarilyticus species 0 252514 817 1 species Microbulbifer thermotolerans 1409 1934945 0 1 Immundisolibacterales 19 order 4 3 38 family Immundisolibacteraceae 1 0 1390 1934946 genus 22 Immundisolibacter 2 0 1934947 1352 1 Immundisolibacter cernigliae species 1 1330 1810504 0 1 0 31434 135623 43 27 order Vibrionales 1 0 641 31407 42 family 172 Vibrionaceae 4 14 genus Photobacterium 1 0 2765 657 0 74109 733 1 species Photobacterium profundum 1215 1295392 0 1 Photobacterium gaetbulicola species 1 species Photobacterium damselae 0 803 38293 2 Grimontia genus 8 1 246861 677 0 0 673 669 1 species Grimontia hollisae 0 2042066 555 genus 1 species Paraphotobacterium marinum 1 0 1755811 555 1 1970 511678 0 4 Aliivibrio 16 genus 1 Aliivibrio wodanis species 809 80852 0 40269 491 0 1 Aliivibrio salmonicida species Aliivibrio fischeri species 1 654 668 0 520 genus Vibrio 30 0 25268 662 1 0 487 1534743 1 species Vibrio hyugaensis 1 species Vibrio nigripulchritudo 0 704 28173 Vibrio tritonius species 1 671 1435069 0 2614977 917 0 2 no rank 485 1116375 0 1 Vibrio sp. EJY3 species 0 2014742 432 1 species Vibrio sp. 2521-89 species Vibrio coralliilyticus 1 0 190893 1328 0 717610 9333 species group 10 0 669 852 1 species Vibrio harveyi 1 species Vibrio campbellii 0 680 1100 0 721 696485 species Vibrio owensii 1 1416 2315253 0 2 species subgroup 0 50719 885 1 species Vibrio diabolicus 150340 531 0 1 Vibrio antiquarius species 766224 441 0 1 Vibrio jasicida species 1836 670 0 1 Vibrio parahaemolyticus species 190895 366 0 Vibrio rotiferianus species 1 1603 663 0 Vibrio alginolyticus species 1 0 998 691 species Vibrio natriegens 1 species Vibrio breoganii 1 0 703 553239 0 1891919 485 species group 1 485 29498 0 Vibrio tubiashii species 1 753 687 0 1 Vibrio gazogenes species 1 Vibrio mimicus species 1072 674 0 Vibrio fluvialis species 1 676 1175 0 627 212663 0 Vibrio tasmaniensis species 1 0 737 45658 1 species Vibrio scophthalmi species Vibrio qinghaiensis 1 0 574 2025808 Vibrio vulnificus species 1 1702 672 0 Vibrio tapetis species 1 52443 541 0 29494 917 0 Vibrio furnissii species 1 1 species Vibrio cholerae 0 1054 666 55601 968 0 Vibrio anguillarum species 1 0 4461 118884 no rank 13 clade 3 0 32036 823 1 species Calyptogena okutanii thioautotrophic gill symbiont 0 410330 249 0 1541743 238 1 genus 1 species Candidatus Ruthia magnifica 0 238 386487 0 336 113267 1 species Bathymodiolus septemdierum thioautotrophic gill symbiont 1 clade 198346 415 0 species Candidatus Baumannia cicadellinicola 1 0 186490 415 1 1524249 823 0 2 Pseudohongiella genus 3 1249552 820 0 Pseudohongiella spirulinae species 1 Thiolapillus 2 genus 2 1003 1608298 0 1 Thiolapillus brandeum species 1 1076588 1001 0 2 Sedimenticola 7 genus 1 857 349742 0 1 Sedimenticola thiotaurini species 850 1543721 0 655184 540 0 1 Candidatus Thioglobus genus 2 3 Candidatus Thioglobus autotrophicus species 1 1705394 251 0 1 species Candidatus Thioglobus singularis 0 287 1427364 63 order Methylococcales 12 0 5536 135618 1 11 family 55 Methylococcaceae 1 0 403 5473 762296 525 0 1 Methylovulum genus 1 2 0 524 1704499 species Methylovulum psychrotolerans 1 0 3425 416 1 48 genus Methylomonas 5 0 878 421 species Methylomonas methanica 1 702114 765 0 1 Methylomonas koyamae species no rank 1 1008 2608980 0 0 1727196 1008 species Methylomonas sp. DH-1 1 1 Methylomonas denitrificans species 1538553 726 0 2 27 genus Methylococcus 1 0 832 413 805 414 0 Methylococcus capsulatus species 1 0 636 39773 genus 1 1 Methylomicrobium alcaliphilum species 636 271065 0 105 175 order Alteromonadales 1 0 46630 135622 Moritellaceae 6 family 3 723 267891 0 1 1 0 717 58050 2 1 genus Moritella species Moritella viscosa 1 0 716 80854 1 10821 267888 0 25 Pseudoalteromonadaceae 39 family 10782 53246 0 1 Pseudoalteromonas 293 genus 24 species Pseudoalteromonas marina 1 0 334 267375 1 Pseudoalteromonas espejiana species 28107 259 0 1 species Pseudoalteromonas arctica 0 326 394751 1 species Pseudoalteromonas spongiae 0 298657 893 species Pseudoalteromonas tetraodonis 1 0 296 43659 360 228 0 Pseudoalteromonas haloplanktis species 1 1 Pseudoalteromonas atlantica species 681 288 0 366 166935 0 1 Pseudoalteromonas translucida species 372 161398 0 1 Pseudoalteromonas phenolica species 1 species Pseudoalteromonas piratica 0 1348114 563 549 314281 0 1 Pseudoalteromonas tunicata species 1 Pseudoalteromonas aliena species 247523 501 0 635 43662 0 1 Pseudoalteromonas piscicida species 343 28109 0 1 Pseudoalteromonas nigrifaciens species 43657 607 0 1 Pseudoalteromonas luteoviolacea species 0 176102 329 1 species Pseudoalteromonas agarivorans 1 Pseudoalteromonas issachenkonii species 152297 291 0 1 Pseudoalteromonas rubra species 511 43658 0 5 no rank 2273 194690 0 283699 416 0 Pseudoalteromonas sp. Bsw20308 species 1 0 234831 300 species Pseudoalteromonas sp. SM9913 1 1 Pseudoalteromonas sp. 13-15 species 420 1761891 0 Pseudoalteromonas sp. NC201 species 1 680 1514074 0 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 1 1720343 457 0 Psychromonadaceae family 2 4 267894 823 0 1 genus 10 Psychromonas 3 0 67572 821 1 1 species Psychromonas ingrahamii 0 523 357794 1 no rank 2614957 288 0 314282 288 0 1 Psychromonas sp. CNPT3 species 0 14931 72275 1 106 family Alteromonadaceae 29 genus 2 1109 89404 0 0 471 2618684 no rank 1 species Glaciecola sp. 4H-3-7+YE-5 1 0 983545 471 1 Glaciecola nitratireducens species 638 300231 0 genus 4 Paraglaciecola 2 0 1621534 438 1 1 Paraglaciecola psychrophila species 326544 434 0 1 1751872 1009 0 2 Lacimicrobium genus 55 Lacimicrobium alkaliphilum species 1 1526571 954 0 1 0 2742 7458 10 genus 63 Marinobacter 1 species Marinobacter psychrophilus 0 330734 482 787 1033846 0 1 Marinobacter adhaerens species 1 species Marinobacter similis 0 680 1420916 1 species Marinobacter salarius 0 1420917 914 species Marinobacter salinus 1 0 644 1874317 83889 2556 0 3 no rank 0 532 490759 species Marinobacter sp. BSs20148 1 1 Marinobacter sp. CP1 species 954 1671721 0 1 species Marinobacter sp. LQ44 0 1749259 1070 2743 1332 0 1 Marinobacter hydrocarbonoclasticus species 10 Alteromonas genus 34 1 226 4435 0 715451 360 0 1 Alteromonas naphthalenivorans species 28108 1059 0 1 Alteromonas macleodii species 2614992 974 0 3 no rank species Alteromonas sp. MB-3u-76 1 0 287 2058133 1 species Alteromonas sp. RW2A1 0 300 1917158 0 1777491 387 species Alteromonas sp. Mac1 1 589873 452 0 1 Alteromonas australica species 0 440 287094 species Alteromonas addita 1 1 species Alteromonas stellipolaris 0 233316 451 314275 665 0 Alteromonas mediterranea species 1 0 261825 376 1 genus 2 Agarivorans 2 0 374 680279 1 species Agarivorans gilvus Colwelliaceae 6 family 9 3316 267889 0 1 6 23 genus Colwellia 1 0 2721 28228 no rank 3 196834 1546 0 0 444 1816219 species Colwellia sp. PAMC 21821 1 species Colwellia sp. MT41 1 0 555 58049 0 1816218 547 1 species Colwellia sp. PAMC 20917 0 28229 672 species Colwellia psychrerythraea 1 1 species Colwellia beringensis 0 480 1967665 1 0 1518149 589 2 genus 16 Thalassotalea 0 1763536 573 species Thalassotalea crassostreae 1 1 12835 267890 0 25 Shewanellaceae 42 family 1 0 22 12793 24 genus 201 Shewanella 615 260364 0 Shewanella marisflavi species 1 species Shewanella pealeana 1 0 388 70864 0 359303 893 species Shewanella loihica 1 1 species Shewanella putrefaciens 0 24 683 1 Shewanella piezotolerans species 404011 528 0 1 species Shewanella denitrificans 0 289 192073 1 species Shewanella baltica 0 62322 1342 6 no rank 196818 2605 0 1 species Shewanella sp. MR-7 0 375 60481 Shewanella sp. MR-4 species 1 60480 407 0 0 2059264 400 species Shewanella sp. Pdp11 1 1 species Shewanella sp. WE21 0 469 2029986 species Shewanella sp. ANA-3 1 0 444 94122 0 510 351745 1 species Shewanella sp. W3-18-1 1 species Shewanella woodyi 0 60961 431 70863 517 0 1 Shewanella oneidensis species species Shewanella bicestrii 1 0 2018305 405 1 Shewanella violacea species 60217 478 0 1 Shewanella sediminis species 271097 717 0 60478 732 0 Shewanella amazonensis species 1 Shewanella japonica species 1 663 93973 0 1 species Shewanella psychrophila 0 225848 441 56812 268 0 1 Shewanella frigidimarina species 0 271098 597 1 species Shewanella halifaxensis 0 1474 267892 1 5 family Ferrimonadaceae 3 Ferrimonas genus 22 2 44011 1469 0 1 species Ferrimonas balearica 1 0 1447 44012 1 1532 267893 0 6 Idiomarinaceae 7 family 10 genus Idiomarina 5 0 1525 135575 1 280 1096243 0 1 Idiomarina piscisalsi species no rank 2 0 826 2614829 2100422 426 0 1 Idiomarina sp. OT37-5b species 400 2055892 0 Idiomarina sp. X4 species 1 species Idiomarina loihiensis 1 0 135577 409 33811 2113 0 2 no rank 1248727 1065 0 endosymbiont of unidentified scaly snail isolate Monju species 1 species gamma proteobacterium HdN1 1 0 83406 1048 81320 135625 0 1 Pasteurellales 10 order 29 1 712 81310 0 28 Pasteurellaceae family 995 genus 10 Pasteurella 3 0 745 2306 1 0 636 754 species Pasteurella dagmatis 1 Pasteurella multocida species 1 747 1660 0 genus 1 0 214906 750 0 731 750 1 species Histophilus somni 1 0 3474 713 5 28 genus Actinobacillus 1 species Actinobacillus succinogenes 0 67854 696 0 715 1339 species Actinobacillus pleuropneumoniae 1 1 Actinobacillus equuli species 749 718 0 Actinobacillus suis species 1 662 716 0 0 773 155493 1 9 genus Gallibacterium 2 1 species Gallibacterium anatis 0 750 764 476528 1743 0 genus 1 0 1743 47735 species Bibersteinia trehalosi 1 1 75984 2323 0 4 Mannheimia genus 30 0 929 85404 species Mannheimia varigena 1 562 2645054 0 1 no rank 1 Mannheimia sp. USDA-ARS-USMARC-1261 species 562 1432056 0 Mannheimia haemolytica species 1 75985 802 0 6 Haemophilus 40 genus 1 64411 724 0 730 767 0 1 [Haemophilus] ducreyi species 0 249188 3920 species Haemophilus pittmaniae 1 species Haemophilus influenzae 1 0 727 4898 1 no rank 2609962 1925 0 1 Haemophilus sp. oral taxon 036 species 1925 712310 0 1 species Haemophilus parainfluenzae 0 52861 729 13 genus Aggregatibacter 3 0 2720 416916 1 0 700 714 1 species Aggregatibacter actinomycetemcomitans species Aggregatibacter aphrophilus 1 0 2007 732 1 genus 0 1087 2094023 0 738 1087 species Glaesserella parasuis 1 697331 728 0 genus 1 157673 728 0 1 [Mannheimia] succiniciproducens species 0 1231 1240482 5 order 5 Orbaceae 10 family 1 1231 1240483 0 1 1193503 610 0 2 Gilliamella genus 3 1196095 607 0 1 Gilliamella apicola species Frischella 2 genus 2 611 1335631 0 1 1267021 609 0 1 Frischella perrara species 1 0 35056 135624 29 162 order Aeromonadales 28 family 356 Aeromonadaceae 1 0 84642 34894 Oceanimonas 33 genus 2 1578 129577 0 1 1545 2636315 0 1 no rank 1 Oceanimonas sp. GK1 species 511062 1545 0 0 731 43947 1 1 genus Tolumonas 2 species Tolumonas auensis 1 0 730 43948 3 genus 9 Oceanisphaera 1 0 225143 805 0 488 1416627 1 species Oceanisphaera profunda 0 308 1903694 species Oceanisphaera sp. AMac2203 1 0 29349 642 1 2023 genus Aeromonas 18 species Aeromonas schubertii 1 0 1130 652 3133 654 0 1 Aeromonas veronii species 1 Aeromonas media species 914 651 0 644 6665 0 Aeromonas hydrophila species 1 8 no rank 0 8219 257493 1 Aeromonas sp. CU5 species 2033033 1179 0 0 1276 1636609 species Aeromonas sp. ASNIH4 1 1051 1758179 0 1 Aeromonas sp. ASNIH5 species species Aeromonas sp. CA23 1 0 1299 2033032 1 species Aeromonas sp. ASNIH7 0 794 1920107 1636607 833 0 Aeromonas sp. ASNIH2 species 1 0 845 1636606 1 species Aeromonas sp. ASNIH1 0 942 1636608 1 species Aeromonas sp. ASNIH3 1 species Aeromonas rivipollensis 0 1298 948519 species Aeromonas aquatica 1 0 558964 1240 1 species Aeromonas dhakensis 0 1438 196024 0 2251 645 1 species Aeromonas salmonicida 1 species Aeromonas caviae 0 648 1038 Zobellella 23 genus 2 2075 347533 0 1 0 2052 347534 species Zobellella denitrificans 1 580370 1944 0 1 Zetaproteobacteria class 3 6 1941 580371 0 1 Mariprofundales 13 order 5 1 0 1928 580372 4 2 family Mariprofundaceae Mariprofundus genus 7 3 377315 1926 0 1 975 1921086 0 1 Mariprofundus aestuarium species Mariprofundus ferrinatatus species 1 1921087 944 0 1 4767 1553900 0 12 Oligoflexia 2 class 6 order 5 Bacteriovoracales 1 0 2024979 1383 family 3 Bacteriovoracaceae 3 0 263369 892 1 0 146784 889 1 genus 4 Bacteriovorax 2 1 Bacteriovorax stolpii species 885 960 0 1652132 486 0 1 Halobacteriovoraceae family 3 2 genus 1 0 1652133 483 1 species Halobacteriovorax marinus 0 483 97084 Bdellovibrionales order 19 5 213481 3382 0 1 1 213483 3363 0 4 Bdellovibrionaceae family 20 1 0 958 3343 3 genus 13 Bdellovibrio 427 453816 0 1 Bdellovibrio exovorus species 0 2903 959 1 species Bdellovibrio bacteriovorus 561 class 1500 Alphaproteobacteria 1 0 28211 362112 1 54481 204457 0 82 Sphingomonadales 452 order 1 0 335929 11441 22 family 194 Erythrobacteraceae 2 genus 1083 2800686 0 Altererythrobacter dongtanensis species 1 692370 560 0 species Altererythrobacter mangrovi 1 0 523 1982042 2 genus 0 1855416 1106 266951 519 0 Erythrobacter seohaensis species 1 1 Erythrobacter flavus species 192812 587 0 3 28 genus Croceicoccus 1 0 1684 1295327 species Croceicoccus naphthovorans 1 0 1348774 710 species Croceicoccus marinus 1 0 946 450378 0 2800685 542 1 genus 1 species Altererythrobacter marensis 0 542 543877 Altererythrobacter genus 60 4 361177 1861 0 1 0 773 1267766 species Altererythrobacter atlanticus 1 species Altererythrobacter ishigakiensis 1 0 476157 337 0 361183 691 1 species Altererythrobacter epoxidivorans 3105 2800788 0 no rank 6 46 genus Porphyrobacter 3 0 1260 1111 1 no rank 2 0 2683265 1214 2023229 688 0 Porphyrobacter HT-58-2 species 1 526 1896196 0 Porphyrobacter sp. LM 6 species 1 0 1845 1041 1 46 genus Erythrobacter 3 0 39960 1097 species Erythrobacter litoralis 1 1112 702 0 1 Porphyrobacter neustonensis species 0 1141 2800681 2 genus 1 species Erythrobacter atlanticus 0 1648404 529 612 502682 0 Erythrobacter gangjinensis species 1 2800682 725 0 1 genus 1 species Altererythrobacter namhicola 0 645517 725 574 family Sphingomonadaceae 59 0 42588 41297 1 genus 18 Blastomonas 2 0 150203 944 1 no rank 1 2626550 926 0 926 1842535 0 1 Blastomonas sp. RAC04 species 0 2709685 555 1 genus 555 266812 0 1 Sphingorhabdus flavimaris species 1472 1434046 0 1 Sphingorhabdus 32 genus 3 2 no rank 1440 2614947 0 0 732 1806885 1 species Sphingorhabdus sp. M41 1 species Sphingorhabdus sp. YGSMI21 0 708 2077182 1 541 1300 0 2 Zymomonas genus 1 1 Zymomonas mobilis species 1299 542 0 Sphingomonas 254 genus 15 12810 13687 0 1 1 species Sphingomonas koreensis 0 93064 940 1 species Sphingomonas panacis 0 1560345 901 1 Sphingomonas sanxanigenens species 397260 975 0 Sphingomonas taxi species 1 834 1549858 0 160791 2047 0 1 Sphingomonas wittichii species 997 2 1 strain Sphingomonas sp. DC-6 0 1283312 1050 0 1017 152682 1 species Sphingomonas melonis 0 196159 5065 6 no rank Sphingomonas sp. LK11 species 1 823 1390395 0 0 1938607 747 species Sphingomonas sp. LM7 1 0 759 1030157 species Sphingomonas sp. KC8 1 0 1327635 669 species Sphingomonas sp. Cra20 1 1 Sphingomonas sp. MM-1 species 1045 745310 0 0 1022 1961362 species Sphingomonas sp. NIC1 1 1609977 777 0 1 Sphingomonas hengshuiensis species 2 Citromicrobium genus 18 1 72173 679 0 no rank 1 2630544 661 0 Citromicrobium sp. JL477 species 1 1634516 661 0 0 165697 6359 1 genus 197 Sphingopyxis 10 1 species Sphingopyxis granuli 0 824 267128 species Sphingopyxis alaskensis 1 0 537 117207 1 Sphingopyxis terrae species 526 33052 0 635 1515612 0 1 Sphingopyxis fribergensis species no rank 4 2395 2614943 0 1 species Sphingopyxis sp. 113P3 0 695 292913 1 species Sphingopyxis sp. MG 0 1866325 592 455 1913578 0 Sphingopyxis sp. LPB0140 species 1 0 1357916 653 species Sphingopyxis sp. QXT-31 1 33050 1245 0 Sphingopyxis macrogoltabida species 1 1 0 861 1649486 2 7 genus Rhizorhabdus 854 1850238 0 1 Rhizorhabdus dicambivorans species 1 12529 165695 0 15 Sphingobium 294 genus 1673076 1058 0 Sphingobium hydrophobicum species 1 2611147 4973 0 6 no rank 0 950 1315974 1 species Sphingobium sp. TKS 1 Sphingobium sp. MI1205 species 407020 666 0 812 1843368 0 1 Sphingobium sp. RAC03 species Sphingobium sp. YBL2 species 1 1015 484429 0 0 884 627192 1 species Sphingobium sp. SYK-6 1 Sphingobium sp. EP60837 species 1855519 646 0 0 46429 1021 1 species Sphingobium chlorophenolicum species Sphingobium japonicum 1 0 937 332056 1 species Sphingobium indicum 0 332055 879 0 708 120107 1 species Sphingobium cloacae 1332080 757 0 1 Sphingobium baderi species Sphingobium herbicidovorans species 1 76947 756 0 Sphingobium yanoikuyae species 1 13690 1146 0 2685927 627 0 genus 1 0 1921510 627 1 species Sphingomonas sp. JJ-A5 5 Novosphingobium genus 32 1 165696 3878 0 0 999 48935 species Novosphingobium aromaticivorans 1 Novosphingobium resinovorum species 1 158500 1080 0 no rank 1 0 2644732 798 Novosphingobium sp. PP1Y species 1 798 702113 0 species Novosphingobium pentaromativorans 1 0 969 205844 810 2800059 0 2 order 2800061 810 0 2 family 0 810 74317 1 25 genus Maricaulis 2 785 74318 0 1 Maricaulis maris species 1 53658 204441 0 66 Rhodospirillales 655 order 0 30725 41295 1 520 family Rhodospirillaceae 30 Magnetospirillum 155 genus 5 6693 13134 0 1 55518 1742 0 Magnetospirillum gryphiswaldense species 1 1 species Magnetospirillum magneticum 0 1749 84159 2 no rank 3047 2617991 0 1 species Magnetospirillum sp. XM-1 0 1663591 1436 1639348 1611 0 Magnetospirillum sp. ME-1 species 1 2 Pararhodospirillum 4 genus 1 809 1612157 0 1 Pararhodospirillum photometricum species 1084 805 0 1804663 412 0 1 Haematospirillum genus 3 2 species Haematospirillum jordaniae 1 0 1549855 409 Niveispirillum 15 genus 2 1447 1543704 0 1 species Niveispirillum cyanobacteriorum 1 0 1432 1612173 1 genus 0 411 1263978 0 1263979 411 1 species Candidatus Endolissoclinum faulkneri genus 16 Thalassospira 3 0 168934 1970 1 941 2048283 0 Thalassospira sp. CSC3H3 species 1 1 species Thalassospira xiamenensis 0 1013 220697 1 2807 1081 0 3 Rhodospirillum 72 genus 0 1049 1085 1 species Rhodospirillum rubrum species Rhodospirillum centenum 1 0 34018 1686 Magnetospira genus 12 2 1182780 797 0 1 1 no rank 0 2685734 785 1 species Magnetospira sp. QH-2 0 1288970 785 0 1697 171436 1 29 genus Tistrella 2 171437 1668 0 Tistrella mobilis species 1 10780 191 0 1 Azospirillum 191 genus 5 3455 192 0 Azospirillum brasilense species 1 3775 193 0 Azospirillum lipoferum species 1 0 528244 2402 species Azospirillum thiophilum 1 Azospirillum humicireducens species 1 1226968 957 0 1 0 2382 1543705 2 22 genus Nitrospirillum 28077 2360 0 1 Nitrospirillum amazonense species family 281 Acetobacteraceae 35 0 433 22278 1 1 0 522 1624 3 genus 82 Acidiphilium species Acidiphilium cryptum 1 0 524 727 Acidiphilium multivorum species 1 815 62140 0 2 Asaia 3 genus 1 436 91914 0 1 species Asaia bogorensis 0 433 91915 0 783 1602345 1 2 genus Parasaccharibacter 2 Parasaccharibacter apium species 1 781 1510841 0 3015 125216 0 1 Roseomonas 54 genus 3 0 1533 2617492 1 no rank 1 species Roseomonas sp. FDAARGOS_362 0 2018065 1533 1 species Roseomonas gilardii 0 257708 1428 7 genus Neoasaia 2 0 652 320496 1 1 species Neoasaia chiangmaiensis 0 320497 645 3 genus 8 Gluconobacter 1 0 441 2224 Gluconobacter albidus species 1 318683 708 0 0 442 1508 species Gluconobacter oxydans 1 1 1056 89583 0 2 Gluconacetobacter 28 genus 0 33996 1028 1 species Gluconacetobacter diazotrophicus 0 3533 1434011 1 81 genus Komagataeibacter 5 0 28448 1577 1 species Komagataeibacter xylinus species Komagataeibacter medellinensis 1 0 527 1177712 0 265960 764 1 species Komagataeibacter nataicola 0 33995 584 species Komagataeibacter europaeus 1 2 3 genus Kozakia 1 0 1029 153497 0 153496 1026 1 species Kozakia baliensis 1 1868 364409 0 2 Granulibacter 24 genus Granulibacter bethesdensis species 1 364410 1844 0 0 5777 434 1 48 genus Acetobacter 8 species Acetobacter senegalensis 1 0 446692 646 1 Acetobacter tropicalis species 617 104102 0 0 785 151157 subgenus 1 0 785 435 species Acetobacter aceti 1 species Acetobacter oryzifermentans 1 0 1633874 472 65959 628 0 Acetobacter pomorum species 1 Acetobacter pasteurianus species 1 438 1886 0 0 695 1076596 1 species Acetobacter persici 3585 82117 0 no rank 8 1 0 991903 914 2 genus 20 Polymorphum 1 species Polymorphum gilvum 0 991904 894 579 62654 0 2 clade 2 genus 2 Candidatus Puniceispirillum 1 0 767891 579 1 species Candidatus Puniceispirillum marinum 0 767892 577 1223 1632780 0 1 Phreatobacter 31 genus 2 0 1868589 1192 1 species Phreatobacter sp. S-12 1 0 869 213485 2 21 genus Micavibrio Micavibrio aeruginosavorus species 1 349221 848 0 212 Rhizobiales order 1770 1 356 154070 0 1 118882 7219 0 20 Brucellaceae family 41 genus 1211 Brucella 14 0 234 3069 1 Brucella canis species 1 36855 196 0 species Brucella ovis 1 0 236 91 no rank 4 0 702 2632610 species Brucella sp. 09RB8910 1 0 1844051 241 Brucella sp. 141012304 species 1 1885919 167 0 1 Brucella sp. 09RB8471 species 1149952 221 0 73 1891098 0 Brucella sp. 2002734562 species 1 65 29459 0 1 Brucella melitensis species species Brucella ceti 1 0 120577 164 164 120576 0 1 Brucella pinnipedialis species species Brucella vulpis 1 0 150 981386 0 62 444163 1 species Brucella microti Brucella suis species 1 29461 152 0 species Brucella abortus 1 0 112 235 5 Ochrobactrum 34 genus 1 4109 528 0 1 species Ochrobactrum anthropi 0 529 1026 species Ochrobactrum pseudogrignonense 1 0 419475 1078 0 1027 571256 species Ochrobactrum pituitosum 1 1 species Ochrobactrum sp. A44 0 271865 944 0 14400 69277 1 120 family Phyllobacteriaceae 20 2 Phyllobacterium 9 genus 1 951 28100 0 0 942 1867719 1 species Phyllobacterium zundukense Hoeflea genus 18 2 274591 720 0 1 0 2614931 702 1 no rank species Hoeflea sp. IMCC20628 1 0 1620421 702 1 0 1199 31988 2 14 genus Aminobacter Aminobacter aminovorans species 1 1185 83263 0 Nitratireductor genus 12 2 245876 807 0 1 1 species Nitratireductor basaltis 0 472175 795 6 genus Chelativorans 2 0 707 449972 1 no rank 1 2643807 701 0 0 701 266779 1 species Chelativorans sp. BNC1 1 9896 68287 0 9 Mesorhizobium 289 genus 0 1111 71433 species Mesorhizobium amorphae 1 1116 593909 0 Mesorhizobium opportunistum species 1 2066070 1334 0 Mesorhizobium japonicum species 1 0 381 1312 species Mesorhizobium loti 1 no rank 1 0 1254 325217 species Mesorhizobium sp. WSM1497 1 0 1254 278153 species Mesorhizobium sp. B7 1 0 766 1670800 1 Mesorhizobium australicum species 536018 1231 0 1 species Mesorhizobium ciceri 0 39645 1483 1246 45404 0 1 Beijerinckiaceae 24 family 5 1 genus Beijerinckia 2 0 607 532 1 1 species Beijerinckia indica 0 606 533 120652 615 0 1 Methylocella genus 11 2 species Methylocella silvestris 1 0 199596 604 0 51672 82115 1 539 family Rhizobiaceae 55 genus 4 Shinella 2 0 323620 1545 1 no rank 1 0 2643062 1541 0 879274 1541 species Shinella sp. HZN7 1 36 no rank 0 37135 227290 9254 357 0 1 Agrobacterium 163 genus 7 1 Agrobacterium rhizogenes species 1192 359 0 1 Agrobacterium vitis species 967 373 0 2 species group 1183400 5146 0 1026 1176649 0 Agrobacterium fabrum species 1 1 Agrobacterium tumefaciens species 358 4120 0 no rank 2 0 2632611 1786 0 861208 1015 1 species Agrobacterium sp. H13-3 1842536 771 0 1 Agrobacterium sp. RAC06 species 1 0 26011 379 27 1708 genus Rhizobium species Rhizobium leguminosarum 1 0 5746 384 0 1186 398 1 species Rhizobium tropici no rank 21 0 2613769 10969 1111 2048897 0 1 Rhizobium sp. NXC24 species 1 species Rhizobium sp. CIAT894 0 2020312 713 1 Rhizobium sp. Kim5 species 730 2020311 0 1 species Rhizobium sp. NT-26 0 712 1125847 0 873 424182 1 species Rhizobium sp. IRBG74 0 1703968 11 1 species Rhizobium sp. N871 1914541 954 0 Rhizobium sp. Y9 species 1 0 768 1981173 species Rhizobium sp. NXC14 1 179 1703961 0 1 Rhizobium sp. N1314 species 1 Rhizobium sp. S41 species 864 1869170 0 0 1703969 796 species Rhizobium sp. N324 1 1 Rhizobium sp. N113 species 1703960 5 0 1571470 1162 0 1 Rhizobium sp. ACO-34A species 0 1703967 18 species Rhizobium sp. N741 1 1703962 23 0 Rhizobium sp. N1341 species 1 1 Rhizobium sp. 10195 species 994 2028343 0 0 729 1301032 1 species Rhizobium sp. IE4771 1 1703965 0 1 Rhizobium sp. N6212 species 0 1 1703964 species Rhizobium sp. N621 1 species Rhizobium sp. TAL182 1 0 146 2020313 179 1703966 0 Rhizobium sp. N731 species 1 0 56730 1597 species Rhizobium gallicum 1 1853 396 0 Rhizobium phaseoli species 1 0 29449 2952 1 species Rhizobium etli 0 1870 1525371 1 9 genus Neorhizobium 2 399 1861 0 1 Neorhizobium galegae species 1205 34019 0 1 Liberibacter 13 genus 6 34021 131 0 Candidatus Liberibacter asiaticus species 1 0 34020 278 species Candidatus Liberibacter africanus 1 species Liberibacter crescens 1 0 396 1273132 0 309868 223 species Candidatus Liberibacter americanus 1 164 556287 0 1 Candidatus Liberibacter solanacearum species no rank 10 227292 11248 0 Ensifer genus 8 3 106591 2056 0 1 106592 1125 0 Ensifer adhaerens species 1 0 923 716925 species Ensifer sojae 1 7 Sinorhizobium 199 genus 1 9192 28105 0 0 2613772 2310 2 no rank 878 794846 0 1 Sinorhizobium sp. CCBAU 05631 species 0 1842534 1432 species Sinorhizobium sp. RAC02 1 species group 1 663276 2211 0 0 380 2211 1 species Sinorhizobium fredii 0 2280 382 1 species Sinorhizobium meliloti 860 110321 0 Sinorhizobium medicae species 1 Sinorhizobium americanum species 1 194963 1332 0 family 18 Chelatococcaceae 4 0 2036754 2259 1 1 2241 28209 0 3 Chelatococcus 47 genus Chelatococcus daeguensis species 1 961 444444 0 1233 2638111 0 1 no rank species Chelatococcus sp. CO-6 1 0 1702325 1233 0 4730 255475 1 32 family Aurantimonadaceae 7 293088 3741 0 1 Martelella genus 75 4 1 no rank 0 2629616 1194 1 Martelella sp. AD-3 species 1194 686597 0 293089 1054 0 Martelella mediterranea species 1 1 Martelella endophytica species 1418 1486262 0 2 genus 17 Aureimonas 1 0 414371 957 2615206 940 0 no rank 1 1 species Aureimonas sp. AU20 0 940 1349819 family 90 Hyphomicrobiaceae 19 0 45401 10938 1 Blastochloris 26 genus 2 1121 59282 0 1 0 1095 1079 species Blastochloris viridis 1 1 81 3301 0 4 Hyphomicrobium genus 28 0 2619925 1025 no rank 1 1025 717785 0 Hyphomicrobium sp. MC1 species 1 1427356 1154 0 1 Hyphomicrobium nitrativorans species Hyphomicrobium denitrificans species 1 53399 1094 0 2 8 genus Filomicrobium 1 0 539 119044 1608628 531 0 1 Candidatus Filomicrobium marinum species 4 genus 115 Devosia 1 0 46913 3037 no rank 3 0 196773 2922 1 Devosia sp. I507 species 627 2083786 0 0 975 1643450 1 species Devosia sp. H5989 species Devosia sp. A16 1 0 1320 1736675 1 0 1068 957 2 genus 12 Rhodomicrobium 1 species Rhodomicrobium vannielii 0 1069 945 Rhodoplanes 38 genus 2 1117 29407 0 1 no rank 1 1079 2619116 0 0 1079 674703 species Rhodoplanes sp. Z2-YC6860 1 1 776 1082930 0 2 Pelagibacterium 33 genus 531813 743 0 1 Pelagibacterium halotolerans species 32 family Bartonellaceae 18 0 5885 772 1 17 genus 101 Bartonella 1 0 773 5853 1 Bartonella grahamii species 356 33045 0 species Bartonella tribocorum 1 0 359 85701 0 1828 2645622 no rank 6 1933910 224 0 Bartonella sp. A1379B species 1 0 515256 274 1 species Bartonella sp. 1-1C Bartonella sp. JB63 species 1 1933907 351 0 Bartonella sp. Raccoon60 species 1 231 1933912 0 0 1933904 389 1 species Bartonella sp. WD16.2 0 359 1933906 species Bartonella sp. JB15 1 1 Bartonella bacilliformis species 199 774 0 0 221 1318743 species Bartonella ancashensis 1 1 species Bartonella australis 0 210 388640 1 species Bartonella vinsonii 0 243 33047 1 species Bartonella henselae 0 38323 264 1686310 1440 0 1 Bartonella apis species species Bartonella quintana 1 0 803 320 56426 312 0 Bartonella clarridgeiae species 1 1 0 31993 2101 6 family 12 Methylocystaceae 1 0 425 1024 2 genus 37 Methylosinus 1 Methylosinus trichosporium species 426 987 0 3 37 genus Methylocystis 1 0 1065 133 no rank 1 0 462 2625913 0 187303 462 species Methylocystis sp. SC2 1 566 655015 0 1 Methylocystis bryophila species 2737 119042 0 no rank 6 2 Methyloceanibacter 11 genus 1 665 1484898 0 Methyloceanibacter caenitepidi species 1 654 1384459 0 genus 8 Pseudorhodoplanes 2 0 1734920 923 1 0 915 1235591 1 species Pseudorhodoplanes sinuspersici 0 1572860 1149 1 genus 18 Hartmannibacter 2 1 species Hartmannibacter diazotrophicus 0 1131 1482074 1 27133 41294 0 26 Bradyrhizobiaceae 341 family 2 Oligotropha genus 6 1 40136 668 0 0 662 40137 1 species Oligotropha carboxidovorans 1 0 1073 6037 2 genus 87 Rhodopseudomonas 0 5950 1076 1 species Rhodopseudomonas palustris 1 0 85413 4458 5 genus 75 Bosea 1 Bosea vaviloviae species 1526658 1144 0 0 2653178 3239 no rank 3 1286 2015316 0 1 Bosea sp. AS-1 species 0 765 1792307 1 species Bosea sp. PAMC 26642 species Bosea sp. RAC05 1 0 1842539 1188 Variibacter 9 genus 2 433 1649510 0 1 0 424 1333996 1 species Variibacter gotjawalensis 1 911 1378 0 3 Nitrobacter genus 6 1 Nitrobacter winogradskyi species 633 913 0 912 739 0 Nitrobacter hamburgensis species 1 13818 374 0 1 Bradyrhizobium 437 genus 11 Bradyrhizobium oligotrophicum species 1 1035 44255 0 0 1274631 1067 species Bradyrhizobium icense 1 2021 1355477 0 1 Bradyrhizobium diazoefficiens species 1926 375 0 1 Bradyrhizobium japonicum species 0 7332 2631580 6 no rank 0 1106 376 1 species Bradyrhizobium sp. 0 1335 1223566 species Bradyrhizobium sp. CCGE-LA001 1 0 1121 115808 species Bradyrhizobium sp. ORS 285 1 Bradyrhizobium sp. SK17 species 1 2057741 1273 0 species Bradyrhizobium sp. BTAi1 1 0 288000 1293 0 114615 1204 1 species Bradyrhizobium sp. ORS 278 4387 335928 0 1 Xanthobacteraceae 53 family 7 Azorhizobium genus 40 2 6 1692 0 1 0 7 1652 1 species Azorhizobium caulinodans 2 Xanthobacter 52 genus 1 1564 279 0 1 Xanthobacter autotrophicus species 1512 280 0 1 152053 1078 0 2 Starkeya genus 21 0 1057 921 1 species Starkeya novella 0 719 119043 1 10 family Rhodobiaceae 3 2 Parvibaculum 13 genus 1 709 256616 0 256618 696 0 1 Parvibaculum lavamentivorans species 1 119045 16874 0 15 Methylobacteriaceae family 95 2 Microvirga genus 35 1 186650 1375 0 Microvirga ossetica species 1 1340 1882682 0 genus 3 2282523 6036 0 408 3319 0 1 Methylobacterium extorquens species 1 species Methylobacterium populi 0 223967 1800 species Methylobacterium zatmanii 1 0 29429 917 9 Methylobacterium genus 535 1 407 9368 0 270351 1399 0 1 Methylobacterium aquaticum species 0 418223 1082 species Methylobacterium phyllosphaerae 1 3 no rank 3172 2615210 0 0 426117 1148 1 species Methylobacterium sp. 4-46 0 1479019 1073 1 species Methylobacterium sp. C1 1 species Methylobacterium sp. AMS5 0 925818 951 31998 1073 0 Methylobacterium radiotolerans species 1 334852 1028 0 1 Methylobacterium oryzae species species Methylobacterium nodulans 1 0 114616 1079 0 1191478 766 1 order 9 Magnetococcales 2 0 1191479 757 family 1 757 162171 0 genus 1 species Magnetococcus marinus 1 0 1124597 757 1888 2800060 0 order 6 Hyphomonadaceae 34 family 6 1888 69657 0 1 0 1355 85 1 23 genus Hyphomonas 3 Hyphomonas neptunium species 1 81032 855 0 1 no rank 477 2630699 0 477 1906738 0 1 Hyphomonas sp. Mor2 species Hirschia 3 genus 2 499 2723 0 1 496 2724 0 Hirschia baltica species 1 0 947 1921002 1 12 order Holosporales 7 360 44746 0 1 Holosporaceae 1 family 2 no rank 1 0 359 204454 1 species endosymbiont of Acanthamoeba sp. UWC8 0 359 86106 Caedimonadaceae 5 family 2 339 2100208 0 1 genus 1 334 1509243 0 0 334 1509244 species Candidatus Nucleicultrix amoebiphila 1 236 1777752 0 2 family 1 1521255 236 0 2 Candidatus Paracaedibacter genus 1 species Candidatus Paracaedibacter acanthamoebae 1 0 91604 235 order 10 Rickettsiales 55 0 766 9193 1 942 3440 0 1 Anaplasmataceae family 7 23 Ehrlichia 24 genus 6 1378 943 0 1 0 1134 106178 species group 4 0 205 35795 species Ehrlichia muris 1 945 274 0 Ehrlichia chaffeensis species 1 0 332 944 species Ehrlichia canis 1 0 779 323 species Ehrlichia ruminantium 1 0 106181 220 1 no rank Ehrlichia sp. HF species 1 391036 220 0 4 1 genus Anaplasma 1 0 330 768 species group 1 0 143 106179 1 Anaplasma phagocytophilum species 143 948 0 1 Anaplasma marginale species 770 105 0 0 769 81 1 species Anaplasma centrale tribe 8 0 952 1457 genus 39 Wolbachia 8 0 953 1457 1 2640676 1418 0 7 no rank species Wolbachia endosymbiont of Onchocerca volvulus 1 0 77551 134 Wolbachia sp. wRi species 1 146 66084 0 0 459 77038 1 species Wolbachia endosymbiont of Drosophila simulans 1 Wolbachia endosymbiont of Cimex lectularius species 246273 209 0 100901 137 0 1 Wolbachia endosymbiont of Onchocerca ochengi species species Wolbachia endosymbiont of Brugia malayi 1 0 212 80849 1 species Wolbachia endosymbiont of Drosophila melanogaster 0 163164 121 1 33993 268 0 4 Neorickettsia genus 3 Neorickettsia sennetsu species 1 65 951 0 0 950 54 1 species Neorickettsia risticii Neorickettsia helminthoeca species 1 33994 146 0 480 1699067 0 no rank 1 480 1528098 0 Rickettsiales bacterium Ac37b species 1 28 2 family Rickettsiaceae 1 0 5063 775 25 tribe 0 4834 33988 0 69474 248 1 genus 2 Orientia 2 0 784 246 1 species Orientia tsutsugamushi 1 0 780 4586 23 genus 549 Rickettsia 0 701 1129742 2 species group 0 500 33990 1 species Rickettsia bellii 1 Rickettsia canadensis species 201 788 0 species group 2 114292 712 0 1 species Rickettsia prowazekii 0 782 383 0 329 785 1 species Rickettsia typhi 1 no rank 114295 281 0 1 Rickettsia endosymbiont of Bemisia tabaci species 281 337479 0 17 species group 2343 114277 0 208 786 0 1 Rickettsia akari species 21 35794 0 1 Rickettsia slovaca species Rickettsia japonica species 1 37 35790 0 Rickettsia rickettsii species 1 41 783 0 1 Rickettsia parkeri species 29 35792 0 1 Rickettsia monacensis species 109232 353 0 35791 178 0 1 Rickettsia massiliae species 1 species Rickettsia philipii 0 31 1105106 species Rickettsia heilongjiangensis 1 0 24 226665 Rickettsia montanensis species 1 142 33991 0 48 781 0 1 Rickettsia conorii species 1 Rickettsia australis species 329 787 0 1 species Rickettsia peacockii 0 104 47589 1 Rickettsia amblyommatis species 33989 172 0 0 367 42862 1 species Rickettsia felis 0 35788 41 1 species Rickettsia africae 0 218 33992 species Rickettsia rhipicephali 1 1 2115980 227 0 2 Candidatus Phycorickettsia genus 1 1 species Candidatus Phycorickettsia trachydisci 0 2115978 226 1 1328881 200 0 2 Candidatus Midichloriaceae family 4 0 411566 196 genus 1 0 196 234827 species Candidatus Midichloria mitochondrii 1 0 2069 54526 1 4 order Pelagibacterales 8 genus 1 2045213 376 0 1 species Candidatus Fonsibacter ubiquis 0 1925548 376 family 9 Pelagibacteraceae 6 0 1655514 1689 1 3 genus 5 Candidatus Pelagibacter 1 0 198251 739 2647897 408 0 no rank 1 species Candidatus Pelagibacter sp. IMCC9063 1 0 1002672 408 326 198252 0 1 Candidatus Pelagibacter ubique species 0 941 1655516 2 no rank 0 525 859653 species alpha proteobacterium HIMB5 1 0 744985 416 species alpha proteobacterium HIMB59 1 0 204458 15020 1 order 123 Caulobacterales 20 19 family 182 Caulobacteraceae 1 0 76892 14897 0 906 76890 1 8 genus Asticcacaulis 2 78587 898 0 Asticcacaulis excentricus species 1 81440 480 0 no rank 1 1759059 480 0 1 Caulobacteraceae bacterium OTSz_A_272 species genus 124 Brevundimonas 7 0 41275 5130 1 0 963 74313 species Brevundimonas subvibrioides 1 588932 702 0 Brevundimonas naejangsanensis species 1 no rank 3 0 2557 2622653 1 species Brevundimonas sp. DS20 0 837 1532555 0 873 1938605 1 species Brevundimonas sp. LM2 1 species Brevundimonas sp. GW460-12-10-14-LB2 0 1827469 847 species Brevundimonas vesicularis 1 0 784 41276 20 1009 0 1 Phenylobacterium genus 9 2 1000 284016 0 1 Phenylobacterium zucineum species 1 0 7190 75 6 138 genus Caulobacter 0 1550 2648921 1 no rank 1 species Caulobacter sp. K31 0 1550 366602 1277 88688 0 Caulobacter segnis species 1 0 946 69395 species Caulobacter henricii 1 155892 2239 0 1 Caulobacter vibrioides species 0 1040 69666 species Caulobacter mirabilis 1 Rhodobacterales order 403 89 204455 63823 0 1 88 Rhodobacteraceae 1184 family 1 63420 31989 0 4 27 genus Rhodovulum 1 0 3300 34008 0 1656 2631432 2 no rank 1 species Rhodovulum sp. MB263 0 308754 809 1564506 847 0 1 Rhodovulum sp. P5 species Rhodovulum sulfidophilum species 1 35806 1617 0 genus 1 0 1284657 402 0 402 1284658 1 species Planktomarina temperata 1 0 1097466 1221 2 genus 12 Defluviimonas 1 species Defluviimonas alba 0 1335048 1209 0 478070 3333 1 genus 33 Labrenzia 4 species Labrenzia aggregata 1 0 187304 1041 no rank 2 2259 2648686 0 species Labrenzia sp. VG12 1 0 1117 2021862 Labrenzia sp. CP4 species 1 1674922 1142 0 1 775 159345 0 2 Roseibacterium 4 genus Roseibacterium elongatum species 1 159346 771 0 2 1 genus Dinoroseobacter 1 0 739 309512 0 738 215813 1 species Dinoroseobacter shibae Roseovarius 4 genus 2 777 74030 0 1 215743 773 0 Roseovarius mucosus species 1 0 1504 53945 1 22 genus Octadecabacter 4 species Octadecabacter antarcticus 1 0 1217908 493 1 Octadecabacter temperatus species 1458307 397 0 1 Octadecabacter arcticus species 592 53946 0 17 genus Halocynthiibacter 2 0 386 1579315 1 0 1579316 369 species Halocynthiibacter arcticus 1 genus 1 0 74032 940 74033 940 0 Antarctobacter heliothermus species 1 3 11 genus Ruegeria 1 0 1992 97050 1214 89184 0 Ruegeria pomeroyi species 1 1 no rank 0 767 2625375 1 species Ruegeria sp. TM1040 0 767 292414 0 227873 1873 1 genus 24 Pannonibacter 2 Pannonibacter phragmitetus species 1 121719 1849 0 genus 2 0 1402 2433 1 Roseobacter denitrificans species 2434 736 0 0 42443 666 1 species Roseobacter litoralis genus 2 0 2669 263377 1 no rank 0 1238 2640570 1792508 1238 0 1 Yangia sp. CCB-MM3 species 0 1431 1229727 species Thiobacimonas profunda 1 1 0 1234 367771 2 9 genus Marinovum 42444 1225 0 Marinovum algicola species 1 1 1609958 975 0 2 Confluentimicrobium genus 1 1 no rank 2643318 974 0 0 1609966 974 1 species Confluentimicrobium sp. EMB200-NS6 genus 2 Ketogulonicigenium 3 0 92944 1569 1 1 Ketogulonicigenium vulgare species 92945 818 0 1 Ketogulonicigenium robustum species 749 92947 0 265 8907 0 1 Paracoccus genus 169 9 1 Paracoccus sp. CBA4604 species 2065379 824 0 0 34003 929 1 species Paracoccus aminophilus 1 Paracoccus contaminans species 891 1945662 0 0 266 1456 species Paracoccus denitrificans 1 0 147645 1667 species Paracoccus yeei 1 no rank 1 246570 752 0 0 1529068 752 species Paracoccus sp. BM15 1 0 1097 1077935 species Paracoccus zhejiangensis 1 34004 1122 0 Paracoccus aminovorans species 1 2211641 856 0 genus 1 245188 856 0 1 Loktanella vestfoldensis species 1 0 5431 1060 5 61 genus Rhodobacter no rank 2 0 196779 1721 692 1850250 0 Rhodobacter sp. LPB0142 species 1 species Rhodobacter sp. CZR27 1 0 2033869 1029 1063 2636 0 1 Rhodobacter sphaeroides species species Rhodobacter capsulatus 1 0 1013 1061 2 Sagittula 2 genus 1 1658 58842 0 1656 2624628 0 1 no rank Sagittula sp. P11 species 1 1656 2009329 0 0 58840 1509 no rank 2 0 2033435 785 species Rhodobacteraceae bacterium QY30 1 0 724 1904441 species Rhodobacteraceae bacterium 1 0 4 436357 1 genus Thalassococcus 1 genus 119541 692 0 0 692 441209 1 species Rhodobaca barguzinensis 2030 60136 0 1 Sulfitobacter 8 genus 3 1139 1402135 0 Sulfitobacter pseudonitzschiae species 1 1 no rank 196795 883 0 1917485 883 0 1 Sulfitobacter sp. AM1-D1 species 2 Pelagibaca genus 2 1 360528 1267 0 1250539 1265 0 Pelagibaca abyssi species 1 0 299261 737 genus 1 Tateyamaria omphalii species 1 737 299262 0 genus Loktanella 1 0 245186 8 0 188905 881 1 genus 5 Jannaschia 2 876 2645469 0 1 no rank 290400 876 0 1 Jannaschia sp. CCS1 species 2 genus 4 Thioclava 1 0 285107 759 species Thioclava nitratireducens 1 0 755 1915078 1649279 801 0 genus 1 0 801 379347 species Ruegeria mobilis 1 5 genus 13 Celeribacter 1 0 875170 3321 1 species Celeribacter manganoxidans 0 1411902 1079 1 Celeribacter indicus species 1208324 926 0 1758178 763 0 1 Celeribacter ethanolicus species 0 1397108 540 1 species Celeribacter marinus 2 Leisingera 7 genus 1 1155 191028 0 0 1148 133924 species Leisingera methylohalidivorans 1 Phaeobacter genus 84 5 302485 6536 0 1 1 species Phaeobacter piscinae 0 1580596 1582 0 221822 2178 species Phaeobacter inhibens 1 0 686 1844006 species Phaeobacter porticola 1 1 Phaeobacter gallaeciensis species 2006 60890 0 Marivivens genus 2 2 1759396 593 0 1 2622455 591 0 1 no rank 1 Marivivens sp. JLT3646 species 1920883 591 0 order 3 0 255473 302 Parvularculaceae 12 family 3 302 255474 0 1 0 290 208215 1 10 genus Parvularcula 2 species Parvularcula bermudensis 1 0 280 208216 25 phylum 0 38017 32066 1 203490 38017 0 25 Fusobacteriia class 20 Fusobacteriales 27 order 24 37997 203491 0 1 Leptotrichiaceae family 35 11 1129771 10337 0 1 2 12 genus Sneathia 1 0 1213 168808 1 Sneathia amnii species 187101 1201 0 32067 6009 0 1 Leptotrichia genus 22 5 species Leptotrichia buccalis 1 0 1429 40542 no rank 3 0 2633022 4558 species Leptotrichia sp. oral taxon 498 1 0 712368 1415 1 Leptotrichia sp. oral taxon 847 species 1449 1785996 0 Leptotrichia sp. oral taxon 212 species 1 1694 712357 0 1 genus 32068 1888 0 1888 826 0 1 Sebaldella termitidis species Streptobacillus genus 1 2 34104 1192 0 1 Streptobacillus moniliformis species 1 34105 1191 0 12 Fusobacteriaceae family 31 1 203492 27633 0 2 genus 4 Ilyobacter 1 0 167639 1336 0 167642 1332 1 species Ilyobacter polytropus 1 0 26266 848 9 132 genus Fusobacterium 1 Fusobacterium gonidiaformans species 1496 849 0 851 8349 0 1 Fusobacterium nucleatum species 0 3622 856 species Fusobacterium varium 1 0 4967 860 1 species Fusobacterium periodonticum 0 2342 1583098 1 species Fusobacterium hwasookii 0 861 2310 species Fusobacterium ulcerans 1 species Fusobacterium mortiferum 1 0 1840 850 1208 859 0 1 Fusobacterium necrophorum species 0 35779 1783257 clade 94 38 Planctomycetes 3 phylum 1 13296 203682 0 Phycisphaerae 15 class 6 2684 666505 0 1 0 1598 2483366 2 order family 2 0 1598 2483367 0 1598 2483368 genus 2 0 796 1941349 1 species Phycisphaerae bacterium ST-PulAB-D4 1940790 802 0 Phycisphaerae bacterium L21-RPul-D3 species 1 1 0 666506 1071 3 order 15 Phycisphaerales 2 family 7 Phycisphaeraceae 1 0 666507 1056 genus 1 0 1049 666508 1 Phycisphaera mikurensis species 1049 547188 0 203683 9893 0 1 Planctomycetia class 55 27 7 order 2691356 2664 0 1763524 2664 0 1 Isosphaeraceae family 34 7 2 1 genus Singulisphaera 1 0 678 466152 1 Singulisphaera acidiphila species 466153 677 0 1 127 560 0 2 Isosphaera genus 1 1 Isosphaera pallida species 128 559 0 1763521 1392 0 1 Paludisphaera genus 7 2 0 1385 1387353 species Paludisphaera borealis 1 1 0 4780 112 11 163 order Planctomycetales 0 4617 126 1 35 family Planctomycetaceae 10 836 1649480 0 1 Planctopirus 2 genus 2 species Planctopirus limnophila 1 0 120 834 1 0 118 2480 3 genus 44 Planctomyces no rank 2 0 2436 2648843 0 1636152 1432 species Planctomyces sp. SH-PL62 1 species Planctomyces sp. SH-PL14 1 0 1004 1632864 0 675 1936111 1 4 genus Fuerstia 2 species Fuerstia marisgermanicae 1 0 1891926 671 2 genus 1 Rubinisphaera 1 0 1649490 591 119 590 0 1 Rubinisphaera brasiliensis species 2691354 1579 0 order 5 452 2691358 0 1 family genus 1 452 1676125 0 species Thermogutta terrifontis 1 0 452 1331910 0 2691357 1127 family 4 621 265488 0 1 Rhodopirellula 1 genus 2 1 species Rhodopirellula baltica 0 620 265606 2 Pirellula 2 genus 1 506 123 0 0 504 125 species Pirellula staleyi 1 3 order 2691355 815 0 3 family 1 Gemmataceae 1 0 1914233 815 1 0 814 113 2 4 genus Gemmata 0 2622970 810 no rank 1 0 810 1630693 1 species Gemmata sp. SH-PL17 4 class 2517206 716 0 1127829 716 0 1 Candidatus Brocadiales order 4 4 3 Candidatus Brocadiaceae 4 family 1 712 1127830 0 Candidatus Kuenenia genus 1 2 380738 708 0 1 Candidatus Kuenenia stuttgartiensis species 1 707 174633 0 22 phylum 0 3094 204428 22 Chlamydiia 7 class 1 3094 204429 0 7 Parachlamydiales order 4 1 1963360 1130 0 92712 181 0 family 1 genus 1 181 34093 0 181 83561 0 1 Simkania negevensis species family 1 Waddliaceae 2 0 92714 286 1 285 71666 0 genus 1 71667 285 0 1 Waddlia chondrophila species 659 92713 0 3 family 429 83551 0 1 Parachlamydia 1 genus 2 species Parachlamydia acanthamoebae 1 0 83552 428 282132 230 0 1 genus 1 Candidatus Protochlamydia naegleriophila species 230 389348 0 51291 1957 0 1 Chlamydiales order 20 14 13 family 6 Chlamydiaceae 1 0 809 1937 0 1931 1113537 12 no rank 12 140 genus Chlamydia 1 0 1931 810 0 1457141 135 species Chlamydia avium 1 154 85991 0 Chlamydia pecorum species 1 1 Chlamydia abortus species 68 83555 0 1 species Chlamydia trachomatis 0 813 156 111 83559 0 Chlamydia suis species 1 0 149 83557 1 species Chlamydia caviae 83554 200 0 1 Chlamydia psittaci species 0 1457153 224 1 species Chlamydia gallinacea 83560 169 0 1 Chlamydia muridarum species species Chlamydia pneumoniae 1 0 83558 151 1 Chlamydia felis species 274 83556 0 phylum 5 0 895 134625 0 1921781 895 1 class 15 Kiritimatiellae 5 4 Kiritimatiellales 1 order 1 880 1921782 0 1 0 1921783 879 3 family 19 Kiritimatiellaceae 1 0 860 1921784 2 19 genus Kiritimatiella Kiritimatiella glycovorans species 1 841 1307763 0 12994 74201 0 1 Verrucomicrobia 16 phylum 26 498 1955630 0 1 Methylacidiphilae 1 class 3 497 717963 0 order 2 717964 497 0 2 family genus 2 497 511745 0 Methylacidiphilum infernorum species 1 164 511746 0 species Methylacidiphilum fumariolicum 1 0 333 591154 12 class 53 Opitutae 1 0 414999 5427 4 order 7 Puniceicoccales 1 0 415001 735 0 415002 728 1 family 7 Puniceicoccaceae 3 2 genus 14 Coraliomargarita 1 0 442430 721 1 species Coraliomargarita akajimensis 0 395922 707 7 123 order Opitutales 1 0 4639 415000 6 Opitutaceae family 43 1 134623 4516 0 0 178440 1205 1 genus 36 Opitutus 2 1 Opitutus terrae species 107709 1169 0 1 no rank 0 1850 278955 1850 794903 0 1 Opitutaceae bacterium TAV5 species 2 genus 38 Lacunisphaera 1 0 1961799 1418 0 1838286 1380 species Lacunisphaera limnophila 1 6 Verrucomicrobiae class 5 1 203494 4746 0 Verrucomicrobiales order 20 5 48461 4741 0 1 1647988 4721 0 1 Akkermansiaceae family 19 4 0 239934 4702 1 genus 17 Akkermansia 3 3214 239935 0 Akkermansia muciniphila species 1 1 Akkermansia glycaniphila species 1471 1679444 0 2 class 0 134549 204 0 134550 204 1 genus 1 Candidatus Xiphinematobacter 2 no rank 1 0 2648876 203 1 Candidatus Xiphinematobacter sp. Idaho Grape species 203 1704307 0 0 2103 417295 no rank 2 0 946 2026799 species Verrucomicrobia bacterium 1 1157 1637999 0 1 Verrucomicrobia bacterium IMCC26134 species 256845 5500 0 phylum 3 24 class Lentisphaeria 3 0 5500 1313211 1 2 Victivallales order 860 1 278082 5476 0 1674876 4616 0 no rank 1 Victivallales bacterium CCUG 44730 species 1 2094242 4616 0 0 200930 3217 phylum 9 class 11 Deferribacteres 9 0 68337 3217 1 order 13 Deferribacterales 8 0 191393 3206 1 3193 191394 0 1 Deferribacteraceae 42 family 7 0 1031 117999 1 genus 118000 1031 0 1 Denitrovibrio acetiphilus species 2 Flexistipes genus 6 1 2351 596 0 0 590 2352 species Flexistipes sinusarabici 1 genus 1 616 545865 0 Calditerrivibrio nitroreducens species 1 477976 616 0 Deferribacter 1 genus 2 908 53572 0 1 1 Deferribacter desulfuricans species 907 197162 0 15608 200918 0 43 phylum 1 0 15608 188708 43 12 class Thermotogae 1 11104 2419 0 28 Thermotogales 4 order 1 0 1643950 4980 10 family 2 Fervidobacteriaceae 1 0 2422 1725 4 genus 7 Fervidobacterium species Fervidobacterium nodosum 1 0 2424 513 1 species Fervidobacterium islandicum 0 406 2423 1 Fervidobacterium pennivorans species 93466 799 0 5 Thermosipho genus 13 1 2420 3253 0 0 2676525 1920 no rank 2 958 1462747 0 1 Thermosipho sp. 1063 species species Thermosipho sp. 1070 1 0 1437364 962 species Thermosipho melanesiensis 1 0 46541 721 599 2421 0 1 Thermosipho africanus species 188709 6120 0 1 Thermotogaceae family 24 17 0 2335 4415 1 genus 88 Thermotoga 11 384 93929 0 1 Thermotoga petrophila species 1 Thermotoga profunda species 414 1508420 0 1 Thermotoga caldifontis species 410 1508419 0 species Thermotoga maritima 1 0 2336 321 1 species Thermotoga naphthophila 0 93930 418 2337 548 0 1 Thermotoga neapolitana species no rank 4 1832 2631113 0 0 465 1157948 1 species Thermotoga sp. 2812B 1 Thermotoga sp. Cell2 species 1157947 399 0 1 species Thermotoga sp. RQ2 0 405 126740 species Thermotoga sp. RQ7 1 0 563 126738 1 0 1643951 1681 5 genus 29 Pseudothermotoga 0 57487 458 1 species Pseudothermotoga hypogea Pseudothermotoga thermarum species 1 450 119394 0 1 Pseudothermotoga lettingae species 177758 340 0 38322 404 0 Pseudothermotoga elfii species 1 6 order 0 934 1643946 1 1643948 934 0 6 Kosmotogaceae family 7 3 Kosmotoga 2 genus 1 591 651456 0 1 Kosmotoga olearia species 264 651457 0 325 1330330 0 Kosmotoga pacifica species 1 2 1 genus Mesotoga 1 0 336 1184396 1184387 335 0 1 Mesotoga prima species Petrotogales order 5 8 1643947 3558 0 1 family 7 0 3553 1643949 1 0 28236 600 2 genus 12 Petrotoga 588 69499 0 Petrotoga mobilis species 1 Marinitoga genus 22 3 160798 2367 0 1 0 2640159 1116 no rank 1 1545835 1116 0 1 Marinitoga sp. 1137 species Marinitoga piezophila species 1 1229 149715 0 586 1511648 0 1 Defluviitoga 8 genus 2 578 1006576 0 Defluviitoga tunisiensis species 1 0 2165 74152 7 phylum 99260 470 0 1 no rank 0 167965 470 species uncultured Termite group 1 bacterium 1 447830 1176 0 3 class 0 1176 1783344 order 3 1 1176 1783343 0 3 Endomicrobiaceae 4 family genus 2 0 1172 1408194 0 500 1408204 1 species Candidatus Endomicrobium trichonymphae 1408281 672 0 Endomicrobium proavitum species 1 0 641853 519 3 class 3 Elusimicrobiales order 1 1 641854 519 0 Elusimicrobiaceae family 1 2 641876 518 0 1 1 genus 0 517 423604 species Elusimicrobium minutum 1 0 423605 517 281 superkingdom 0 2157 54180 5732 1783275 0 55 clade phylum 13 1721 651137 0 1 0 541 1643678 7 3 class Nitrososphaeria 3 order 6 Nitrososphaerales 1 0 1033996 405 1 0 399 1033997 2 1 family Nitrososphaeraceae 0 497726 398 1 genus 1 species Nitrososphaera viennensis 0 1034015 398 3 2 order Candidatus Nitrosocaldales 1 0 133 1968909 1 0 131 1968910 2 3 family Candidatus Nitrosocaldaceae 0 498374 128 genus 1 0 128 2045011 1 species Candidatus Nitrosocaldus islandicus 0 659 31932 3 order 0 338190 659 family 3 2 genus 0 338191 357 1 species Candidatus Nitrosopumilus sediminis 0 1229909 178 Candidatus Nitrosopumilus adriaticus species 1 179 1580092 0 0 302 1993653 1 genus 302 1898749 0 Candidatus Nitrosomarinus catalina species 1 no rank 3 0 521 651142 0 1593364 204 1 genus 0 204 1410606 species Candidatus Nitrosopelagicus brevis 1 genus 2 317 1825023 0 1 species Candidatus Nitrosotenuis sp. AQ6f 0 159 1846278 1 Candidatus Nitrosotenuis cloacae species 158 1603555 0 phylum 1 0 51967 42 42 498845 0 1 genus 1 species Candidatus Korarchaeum cryptofilum 0 42 498846 0 28889 3969 41 phylum 41 Thermoprotei 6 class 1 3969 183924 0 0 367 871006 4 order 0 255472 303 1 family 0 200414 303 genus 1 0 303 200415 species Caldisphaera lagunensis 1 Acidilobaceae 5 family 3 64 871007 0 1 2 Acidilobus 1 genus 1 59 105850 0 0 242703 58 species Acidilobus saccharovorans 1 13 Desulfurococcales 3 order 1 715 114380 0 9 3 family Desulfurococcaceae 1 0 553 2272 54253 47 0 genus 1 0 54254 47 species Thermosphaera aggregans 1 1 genus 74 477695 0 1 Thermogladius calderae species 1200300 74 0 2273 105 0 genus 2 1 Desulfurococcus amylolyticus species 94694 42 0 species Desulfurococcus mucosus 1 0 63 2275 2 genus 0 241 2279 0 84599 105 species Staphylothermus hellenicus 1 0 136 2280 species Staphylothermus marinus 1 54258 83 0 2 genus 55 160233 0 Ignicoccus hospitalis species 1 1 Ignicoccus islandicus species 54259 28 0 0 159 2307 family 3 1 genus 54247 77 0 54248 77 0 Hyperthermus butylicus species 1 0 54251 37 genus 1 54252 37 0 1 Pyrolobus fumarii species genus 1 0 45 2308 1 species Pyrodictium delaneyi 0 45 1273541 0 2266 1026 12 order 0 425 114378 1 3 family Thermofilaceae 5 genus 4 0 2268 422 1 species Thermofilum pendens 0 2269 63 0 79 1550241 species Thermofilum uzonense 1 1365176 139 0 Thermofilum adornatus species 1 1483572 141 0 1 Thermofilum carboxyditrophus species 7 Thermoproteaceae family 2 1 2267 601 0 genus 1 140 2276 0 1 species Pyrobaculum islandicum 0 2277 140 0 164450 176 genus 2 species Vulcanisaeta moutnovskia 1 0 985052 78 1 Vulcanisaeta distributa species 164451 98 0 genus 2 2270 243 0 0 175 2271 1 species Thermoproteus tenax 184117 68 0 1 Thermoproteus uzoniensis species 1 genus 0 40 76886 40 76887 0 1 Caldivirga maquilingensis species 1 order Sulfolobales 11 0 1855 2281 1 0 118883 1854 1 family 2 Sulfolobaceae 10 0 2100760 208 genus 1 0 2287 208 1 species Sulfolobus solfataricus 1 genus 0 275 69655 species Sulfolobus tokodaii 1 0 111955 275 12914 240 0 1 genus 1 Acidianus hospitalis species 240 563177 0 2 genus 41980 210 0 species Metallosphaera cuprina 1 0 55 1006005 0 155 43687 1 species Metallosphaera sedula genus 1 Sulfolobus 4 0 2284 919 1 155 2285 0 Sulfolobus acidocaldarius species 1 0 43080 426 species Sulfolobus islandicus 1 0 337 2641160 1 no rank 0 1891280 337 1 species Sulfolobus sp. A20 48382 28890 0 1 Euryarchaeota 4 phylum 225 10374 2283794 0 41 clade 1 0 183939 4198 16 class 4 Methanococci 4194 2182 0 1 Methanococcales 3 order 15 1 2503 2183 0 6 Methanococcaceae 1 family 0 2213 2184 4 genus species Methanococcus voltae 1 0 2188 246 1 Methanococcus maripaludis species 1370 39152 0 326 2187 0 1 Methanococcus vannielii species species Methanococcus aeolicus 1 0 42879 271 1 genus 0 155862 289 289 155863 0 Methanothermococcus okinawensis species 1 0 1688 196117 8 family 6 genus Methanocaldococcus 7 0 1448 196118 1 species Methanocaldococcus bathoardescens 1 0 361 1301915 Methanocaldococcus fervens species 1 187 83171 0 0 67760 122 species Methanocaldococcus infernus 1 0 276 2641196 no rank 1 276 644281 0 Methanocaldococcus sp. FS406-22 species 1 species Methanocaldococcus jannaschii 1 0 2190 292 204 73913 0 1 Methanocaldococcus vulcanius species 0 240 196119 1 genus 240 2189 0 1 Methanotorris igneus species 5 class Methanobacteria 25 0 6176 183925 1 0 2158 6171 1 order 2 Methanobacteriales 24 2178 215 0 family 1 215 2179 0 1 genus 2180 215 0 Methanothermus fervidus species 1 Methanobacteriaceae family 2 22 2159 5954 0 1 7 Methanobrevibacter genus 21 1 2172 3358 0 1 Methanobrevibacter smithii species 549 2173 0 1 species Methanobrevibacter ruminantium 0 543 83816 598 294671 0 1 Methanobrevibacter olleyae species no rank 2 2638681 929 0 391 224719 0 1 Methanobrevibacter sp. AbM4 species 1 Methanobrevibacter sp. YE315 species 538 1609968 0 species Methanobrevibacter millerae 1 0 230361 718 genus 1 2316 345 0 species Methanosphaera stadtmanae 1 0 2317 345 0 2160 1849 1 genus 4 Methanobacterium 8 0 167 118062 species Methanobacterium congolense 1 348 2627676 0 no rank 2 220 1911685 0 1 Methanobacterium sp. MZ-A1 species 1 species Methanobacterium sp. MB1 0 1379702 128 0 205 59277 species Methanobacterium subterraneum 1 Methanobacterium formicicum species 1 449 2162 0 0 218 868131 1 species Methanobacterium paludis species Methanobacterium lacus 1 0 877455 458 5 Methanothermobacter genus 16 1 145260 400 0 1 Methanothermobacter wolfeii species 145261 98 0 1 species Methanothermobacter marburgensis 0 159 145263 1 species Methanothermobacter thermautotrophicus 0 145262 55 2631116 72 0 no rank 1 Methanothermobacter sp. CaT2 species 1 72 866790 0 1 5783 183968 0 40 Thermococci 24 class 2258 5759 0 1 Thermococcales order 7 39 38 Thermococcaceae family 14 1 2259 5752 0 124 83867 0 1 genus 0 124 971279 species Palaeococcus pacificus 1 genus 7 2260 998 0 Pyrococcus horikoshii species 1 139 53953 0 0 29292 75 1 species Pyrococcus abyssi species Pyrococcus furiosus 1 0 2261 202 0 1609559 94 1 species Pyrococcus kukulkanii 0 2629106 371 no rank 2 1 Pyrococcus sp. NA2 species 342949 137 0 Pyrococcus sp. ST04 species 1 1183377 234 0 0 117 1008460 species Pyrococcus yayanosii 1 29 Thermococcus 27 genus 1 4616 2263 0 0 182 163003 species Thermococcus cleftensis 1 1 species Thermococcus paralvinellae 0 248 582419 298 55802 0 1 Thermococcus barophilus species 195522 165 0 1 Thermococcus nautili species 983 2627626 0 no rank 6 1 Thermococcus sp. 5-4 species 139 2008440 0 species Thermococcus sp. EXT12c 1 0 2016361 169 1 species Thermococcus sp. 2319x1 0 1674923 101 0 129 1042877 1 species Thermococcus sp. 4557 246969 326 0 Thermococcus sp. AM4 species 1 species Thermococcus sp. P6 1 0 119 122420 146 54262 0 1 Thermococcus chitonophagus species 1 species Thermococcus onnurineus 0 154 342948 species Thermococcus profundus 1 0 105 49899 species Thermococcus piezophilus 1 0 165 1712654 0 181 277988 species Thermococcus thioreducens 1 1 species Thermococcus gorgonarius 0 71997 77 Thermococcus siculi species 1 72803 141 0 2264 200 0 Thermococcus celer species 1 1 species Thermococcus barossii 0 109 54077 Thermococcus pacificus species 1 97 71998 0 Thermococcus sibiricus species 1 187 172049 0 0 201 2265 species Thermococcus litoralis 1 136 311400 0 1 Thermococcus kodakarensis species 1 species Thermococcus guaymasensis 0 132 110164 0 125 187878 1 species Thermococcus gammatolerans 0 206 187880 species Thermococcus radiotolerans 1 53952 220 0 Thermococcus peptonophilus species 1 Thermococcus eurythermalis species 1 131 1505907 0 0 2290931 27588 clade 114 1 183963 12673 0 64 Halobacteria class 73 0 1644060 3964 1 order 36 Natrialbales 17 3928 1644061 0 1 Natrialbaceae 43 family 16 0 63742 336 genus 1 13769 336 0 Natrialba magadii species 1 1 535 203193 0 2 Halobiforma 1 genus Halobiforma lacisalsi species 1 229731 534 0 1 88723 685 0 3 Natrinema genus 9 341 2622230 0 1 no rank species Natrinema sp. J7-2 1 0 341 406552 0 335 69525 species Natrinema pellirubrum 1 0 700 121871 1 8 genus Haloterrigena 3 0 387 62320 species Haloterrigena turkmenica 1 305 588898 0 1 Haloterrigena daqingensis species 403 353799 0 genus 1 species Halostagnicola larsenii 1 0 353800 403 0 387342 417 genus 1 417 387343 0 Halopiger xanaduensis species 1 1 genus 0 331 29287 1 species Natronococcus occultus 0 331 29288 0 202 2256 1 3 genus Natronobacterium 2 species Natronobacterium gregoryi 1 0 199 44930 0 276 1269201 1 genus 1 no rank 2621923 276 0 276 1333523 0 Salinarchaeum sp. Harcht-Bsk1 species 1 0 2235 4617 1 order 70 Halobacteriales 28 family 8 Halobacteriaceae 11 0 2236 1484 1 1 0 2239 932 4 genus 29 Halobacterium 1 species Halobacterium salinarum 0 261 2242 1 no rank 296 2668073 0 species Halobacterium sp. DL1 1 0 751944 296 1 species Halobacterium hubeiense 0 1407499 346 0 1656823 121 1 genus 2 Halanaeroarchaeum 2 Halanaeroarchaeum sulfurireducens species 1 1604004 119 0 1 0 254 332246 2 6 genus Halalkalicoccus 248 413810 0 Halalkalicoccus jeotgali species 1 1 0 1980514 169 2 genus 1 Halodesulfurarchaeum Halodesulfurarchaeum formicicum species 1 168 1873524 0 family 51 Haloarculaceae 16 0 1963268 3063 1 1 0 2237 1269 5 genus 35 Haloarcula 0 355 2624677 no rank 1 0 355 1592728 1 species Haloarcula sp. CBA1115 0 51589 374 species Haloarcula hispanica 1 196 1932004 0 1 Haloarcula taiwanensis species 2238 309 0 Haloarcula marismortui species 1 Halomicrobium genus 2 2 203135 382 0 1 species Halomicrobium mukohataei 1 0 380 57705 3 12 genus Halorhabdus 1 0 495 146825 1 Halorhabdus tiamatea species 168 430914 0 1 species Halorhabdus utahensis 0 146826 315 3 Natronomonas genus 8 1 63743 467 0 species Natronomonas moolapensis 1 0 416273 263 1 Natronomonas pharaonis species 2257 196 0 2 genus 13 Halorientalis 1 0 1073987 399 0 2648975 386 no rank 1 1 Halorientalis sp. IM1011 species 386 1932360 0 1 1644055 4019 0 18 Haloferacales order 62 1963271 1484 0 1 Halorubraceae family 12 8 0 56688 661 1 genus 28 Halorubrum 3 1 species Halorubrum trapanicum 0 29284 341 1 Halorubrum lacusprofundi species 292 2247 0 8 genus Salinigranum 2 0 479 1644057 1 1 species Salinigranum rubrum 0 755307 471 Halopenitus 3 genus 2 332 1209988 0 1 1 Halopenitus persicus species 329 1048396 0 family 17 Haloferacaceae 8 0 1644056 2113 1 Halogeometricum genus 1 2 60846 454 0 1 1 Halogeometricum borinquense species 453 60847 0 293431 264 0 genus 1 species Haloquadratum walsbyi 1 0 264 293091 Haloferax 36 genus 4 1378 2251 0 1 1 Haloferax mediterranei species 2252 296 0 Haloferax gibbonsii species 1 35746 492 0 554 2246 0 1 Haloferax volcanii species 1 no rank 2678336 360 0 1 species halophilic archaeon DL31 0 360 756883 1 14915 224756 0 50 Methanomicrobia 27 class 0 570264 621 1 order 2 Methanocellales 4 0 570265 619 3 family genus 5 Methanocella 3 0 570266 619 1 Methanocella conradii species 1 217 1175444 0 397 1175445 0 Methanocella arvoryzae species 1 1 2191 3791 0 15 Methanomicrobiales order 11 0 2194 1652 6 family genus 1 Methanolacinia 2 0 230355 279 1 0 278 54120 species Methanolacinia petrolearia 1 13 genus Methanoculleus 4 0 1373 45989 1 498 83986 0 Methanoculleus bourgensis species 1 460 2198 0 1 Methanoculleus marisnigri species 1 no rank 0 402 2619537 402 86622 0 1 Methanoculleus sp. MAB1 species 1 family 467 196137 0 0 467 2202 genus 1 0 2203 467 species Methanospirillum hungatei 1 0 88404 563 2 family 0 563 2192 1 3 genus Methanocorpusculum 2 83984 560 0 Methanocorpusculum labreanum species 1 1 0 1198451 1098 5 family 20 Methanoregulaceae 475087 285 0 1 genus 0 285 475088 1 species Methanosphaerula palustris 3 genus 8 Methanoregula 1 0 395331 793 0 882104 510 1 species Methanoregula formicica 1 species Methanoregula boonei 0 358766 275 30 Methanosarcinales 12 order 1 10476 94695 0 25 Methanosarcinaceae family 9 1 2206 9758 0 0 2321 309 genus 1 1 Methanohalobium evestigatum species 309 2322 0 3 genus Methanohalophilus 3 0 708 2175 1 294 2176 0 Methanohalophilus mahii species 1 species Methanohalophilus halophilus 1 0 411 2177 419 196136 0 1 genus 1 Methanosalsum zhilinae species 419 39669 0 2 genus 1 Methanolobus 1 0 2220 473 1 Methanolobus psychrophilus species 420950 472 0 Methanococcoides genus 8 3 2225 563 0 1 1 Methanococcoides methylutens species 284 2226 0 0 29291 271 1 species Methanococcoides burtonii genus 1 0 418 101191 418 101192 0 1 Methanomethylovorans hollandica species 0 2207 6859 1 genus 29 Methanosarcina 13 0 412 2210 1 species Methanosarcina thermophila 637 418008 0 Methanosarcina horonobensis species 1 0 796 2209 species Methanosarcina mazei 1 1 Methanosarcina siciliae species 38027 553 0 1 Methanosarcina barkeri species 2208 1277 0 1 species Methanosarcina lacustris 0 461 170861 0 2644672 1730 no rank 4 0 359 1434102 species Methanosarcina sp. WH1 1 1434099 638 0 1 Methanosarcina sp. Kolksee species Methanosarcina sp. MTP4 species 1 1434100 361 0 372 1434103 0 1 Methanosarcina sp. WWM596 species 2215 509 0 Methanosarcina vacuolata species 1 1 species Methanosarcina acetivorans 0 2214 455 Methanosaetaceae family 13 4 143067 706 0 1 3 2 genus Methanothrix 1 0 693 2222 2223 383 0 1 Methanothrix soehngenii species 0 308 301375 species Methanosaeta harundinacea 1 0 2283796 3176 19 clade clade 2 235 1803510 0 genus 2 235 379546 0 1 species Aciduliprofundum boonei 0 121 379547 114 2633939 0 no rank 1 1 Aciduliprofundum sp. MAR08-339 species 673860 114 0 1 0 2941 183967 17 6 class Thermoplasmata 1 no rank 0 1234666 445 species methanogenic archaeon ISO4-H5 1 0 445 1495144 1 0 1235850 877 6 order 1 Methanomassiliicoccales family 8 Methanomassiliicoccaceae 3 0 1577788 424 1 genus 1 164 1607807 0 164 1577791 0 1 Candidatus Methanoplasma termitum species 0 252 1080709 genus 1 252 1406512 0 Candidatus Methanomassiliicoccus intestinalis species 1 452 2517203 0 2 family 1 0 1291539 452 2 genus 9 Candidatus Methanomethylophilus 443 1291540 0 1 Candidatus Methanomethylophilus alvus species 9 Thermoplasmatales 9 order 1 1613 2301 0 2 family Thermoplasmataceae 3 0 230 46659 1 0 228 2302 2 genus 1 Thermoplasma volcanium species 76 50339 0 2303 152 0 Thermoplasma acidophilum species 1 0 90142 374 family 2 0 374 74968 2 genus 1 species Ferroplasma acidiphilum 0 176 74969 species Ferroplasma acidarmanus 1 0 97393 198 0 46630 179 family 1 genus 1 46631 179 0 1 species Picrophilus torridus 0 82076 179 1 no rank 1919231 598 0 598 1054217 0 Thermoplasmatales archaeon BRNA1 species 1 1747776 223 0 1 family 1747777 223 0 1 genus 0 1673428 223 species Cuniculiplasma divulgatum 1 class 10 0 1457 183980 order 10 0 1457 2231 1 0 2232 1457 10 family 1 Archaeoglobaceae 0 590 190818 genus 2 0 337 113653 1 species Geoglobus ahangari 565033 253 0 1 Geoglobus acetivorans species genus 1 Archaeoglobus 5 0 2233 767 1 58290 172 0 Archaeoglobus veneficus species 1 0 1316941 233 species Archaeoglobus sulfaticallidus 1 species Archaeoglobus profundus 1 0 84156 119 0 2234 242 species Archaeoglobus fulgidus 1 2 Ferroglobus 5 genus 1 99 54260 0 Ferroglobus placidus species 1 94 54261 0 1783276 66 0 clade 1 0 66 1801631 1 phylum genus 1 2490204 66 0 1920749 66 0 1 Candidatus Micrarchaeota archaeon Mia14 species