members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 30 16213 4445 14583748 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321Klebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 0 Bacteria 14546917 2 50 1 4178 superkingdom 203691 0 17625 phylum 52 68 1 52 class 0 Spirochaetia 17625 203692 1643686 0 2540 order 6 family 6 13 1 143786 2540 Brachyspiraceae 0 5 12 1 genus 2527 Brachyspira 0 29521 0 769 Brachyspira murdochii 84378 1 species 568 Brachyspira hyodysenteriae 0 159 1 species 84377 0 Brachyspira intermedia 504 species 1 674 Brachyspira pilosicoli 0 52584 1 species order 38 1 651 136 13513 Spirochaetales 0 family 16 1643685 0 1207 64895 513 Borreliella 0 genus 8 19 1 98 Borrelia mayonii 0 1674146 1 species 105 Borreliella afzelii 0 29518 1 species 62088 0 Borreliella valaisiana 50 species 1 1 species 0 49 Borreliella bavariensis 664662 1 species 45 Borreliella bissettii 0 64897 species 1 139 30 Borreliella burgdorferi 0 species 1 29519 0 Borreliella garinii 117 694 Borrelia 0 138 8 18 1 genus 141 Borrelia parkeri 135 0 species 1 40834 0 144 Borrelia duttonii species 1 143 0 70 Borrelia anserina species 1 1 species 0 44 Borrelia hermsii 140 species 1 47466 0 Borrelia miyamotoi 114 0 Borrelia recurrentis 79 44449 1 species 0 90 Borrelia turicatae 142 1 species family 1 92 21 137 0 11655 Spirochaetaceae 385 0 1911556 1 genus 1 species 385 Sediminispirochaeta smaragdinae 0 55206 genus 2 146 0 773 1 species 0 Spirochaeta africana 238 46355 species 1 154 0 Spirochaeta thermophila 535 12 1 16 genus 8477 Treponema 0 157 species 1 160 0 Treponema pallidum 54 1 species 0 994 Treponema putidum 221027 species 1 53435 0 54 Treponema paraluiscuniculi 150829 0 Treponema azotonutricium 567 species 1 0 Treponema denticola 731 158 1 species 0 1315 Treponema brennaborense 81028 1 species 1 species 192 Treponema pedis 0 409322 167 Treponema succinifaciens 1633 0 species 1 Treponema caldarium 278 0 215591 1 species 0 2089 2638727 1 no rank 1 species 0 2089 Treponema sp. OMZ 838 1539298 species 1 88058 554 Treponema primitia 0 genus 4 1 1 399320 1274 Sphaerochaeta 0 271 Sphaerochaeta pleomorpha 0 1131707 1 species 0 Sphaerochaeta coccoides 410 273376 1 species 1 species 592 Sphaerochaeta globosa 0 1131703 1 genus 0 654 1616789 0 Salinispira pacifica 654 1307761 1 species order 7 1643688 1504 0 170 1504 Leptospiraceae 0 family 7 1 2 genus 1 338321 164 0 29510 164 Turneriella parva 0 species 1 genus 5 171 1338 0 species 1 174 0 257 Leptospira borgpetersenii 28183 0 Leptospira santarosai 228 species 1 173 Leptospira interrogans 352 0 species 1 species 1 28452 0 215 Leptospira alstonii 172 0 Leptospira biflexa 286 species 1 7 phylum 929 0 200930 68337 0 Deferribacteres 929 class 2 1 7 191393 0 927 Deferribacterales order 2 1 6 family 14 1 5 191394 0 925 Deferribacteraceae 1 genus 0 374 117999 1 species 0 374 Denitrovibrio acetiphilus 118000 251 0 2351 1 genus 0 251 Flexistipes sinusarabici 2352 1 species 1 genus 0 193 53572 species 1 197162 193 Deferribacter desulfuricans 0 genus 1 545865 93 0 species 1 477976 Calditerrivibrio nitroreducens 93 0 phylum 2 1 6 74152 0 Elusimicrobia 625 1 no rank 0 134 99260 uncultured Termite group 1 bacterium 134 0 167965 1 species 0 177 641853 1 class order 1 641854 0 177 family 1 641876 0 177 genus 1 423604 177 0 1 species 177 Elusimicrobium minutum 0 423605 0 312 447830 3 class 0 312 1783344 3 order 1783343 0 Endomicrobiaceae 312 family 2 1 3 1408194 310 0 genus 2 Endomicrobium proavitum 168 0 1408281 1 species species 1 1408204 142 Candidatus Endomicrobium trichonymphae 0 0 5115 200918 40 phylum 15 1 40 class 0 5115 Thermotogae 188708 7 8 1 order 1296 Petrotogales 0 1643947 6 family 0 1288 1643949 1511648 0 268 Defluviitoga genus 11 1 2 Defluviitoga tunisiensis 257 0 1006576 1 species 801 0 160798 2 genus 0 418 2640159 1 no rank Marinitoga sp. 1137 418 0 1545835 1 species 1 species 383 Marinitoga piezophila 0 149715 Petrotoga 219 0 28236 2 11 1 genus 0 Petrotoga mobilis 208 69499 1 species order 4 1643946 0 453 Kosmotogaceae 453 0 1643948 4 4 1 family 1184396 162 0 genus 1 Mesotoga prima 162 0 1184387 1 species genus 2 651456 0 287 0 Kosmotoga olearia 117 651457 1 species species 1 1330330 0 Kosmotoga pacifica 170 order 28 7 1 2419 3351 Thermotogales 0 family 11 1 17 188709 0 2195 Thermotogaceae 0 Pseudothermotoga 649 1643951 5 1 5 genus species 1 119394 0 Pseudothermotoga thermarum 142 0 120 Pseudothermotoga hypogea 57487 1 species 0 Pseudothermotoga elfii 194 38322 1 species species 1 177758 188 Pseudothermotoga lettingae 0 2335 1535 Thermotoga 0 genus 11 11 1 Thermotoga naphthophila 143 0 93930 1 species 1508419 0 Thermotoga caldifontis 65 species 1 2337 218 Thermotoga neapolitana 0 species 1 4 no rank 646 0 2631113 species 1 126738 0 236 Thermotoga sp. RQ7 species 1 1157948 0 111 Thermotoga sp. 2812B species 1 126740 Thermotoga sp. RQ2 148 0 species 1 1157947 0 151 Thermotoga sp. Cell2 1 species 0 Thermotoga petrophila 148 93929 2336 Thermotoga maritima 179 0 species 1 species 1 1508420 0 Thermotoga profunda 125 1 8 10 family 0 Fervidobacteriaceae 1149 1643950 4 15 1 genus 524 Fervidobacterium 0 2422 1 species 87 Fervidobacterium islandicum 0 2423 93466 256 Fervidobacterium pennivorans 0 species 1 species 1 2424 166 Fervidobacterium nodosum 0 genus 1 1 5 2420 0 Thermosipho 617 species 1 2421 0 Thermosipho africanus 238 species 1 46541 Thermosipho melanesiensis 136 0 242 0 2676525 2 no rank 1 species 124 Thermosipho sp. 1070 0 1437364 1462747 0 118 Thermosipho sp. 1063 species 1 phylum 17 57723 3573 0 class 2 1562566 0 305 458032 0 Chloracidobacterium 305 genus 1 4 2 1 species Chloracidobacterium thermophilum 301 0 458033 204432 0 Acidobacteriia 3268 class 12 1 15 Acidobacteriales 2696 0 204433 11 1 12 order Acidobacteriaceae 2684 0 204434 10 41 1 family Candidatus Koribacter 459 0 658061 2 28 1 genus Candidatus Koribacter versatilis 431 0 658062 1 species genus 1 33973 480 0 species 1 33075 0 480 Acidobacterium capsulatum 2 1 3 genus 0 Granulicella 905 940557 352 Granulicella tundricola 0 940615 1 species 940614 0 Granulicella mallensis 551 species 1 genus 3 2 1 392733 799 Terriglobus 0 Terriglobus saanensis 285 0 870903 1 species species 1 392734 0 Terriglobus roseus 512 order 1 13 3 332160 0 Solibacterales 560 332161 Solibacteraceae 547 0 family 2 9 1 332162 538 0 genus 1 332163 0 Candidatus Solibacter usitatus 538 species 1 2323 0 151 no rank 2 2 clade 151 0 1783234 0 43 95818 1 phylum 1895827 0 43 no rank 1 2056494 0 43 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 species 1 1 clade 0 108 95901 2497643 0 108 class 1 0 108 2497644 1 order 1 family 108 0 2497645 1 genus 108 0 1551504 673862 Candidatus Babela massiliensis 108 0 species 1 1930617 0 465 phylum 3 class 3 1 3 1962850 0 Calditrichae 465 2 order 0 462 1962852 family 2 1962854 0 462 Caldithrix 462 0 187144 2 3 1 genus species 1 187145 0 459 Caldithrix abyssi 1 phylum 0 61 2138240 1 class 0 61 2138243 2138246 61 0 order 1 2138247 61 0 family 1 genus 1 68335 0 61 35786 0 61 Coprothermobacter proteolyticus species 1 200783 1778 0 phylum 20 20 1 1 class Aquificae 1778 0 187857 order 14 32069 0 1458 family 4 224027 0 491 212790 0 390 genus 2 0 241 2619248 1 no rank 436114 241 Sulfurihydrogenibium sp. YO3AOP1 0 species 1 species 1 309806 0 149 Sulfurihydrogenibium azorense 182899 Persephonella 101 0 genus 2 1 2 309805 0 99 Persephonella marina species 1 1 no rank 103 0 90150 1 genus 103 0 412592 species 1 412593 Thermosulfidibacter takaii 103 0 family 9 64898 0 864 2 genus 0 84 75905 1 species 0 Thermocrinis ruber 58 75906 136094 0 26 Thermocrinis albus species 1 939 0 94 genus 1 940 94 Hydrogenobacter thermophilus 0 species 1 genus 5 168657 0 608 no rank 5 2622382 608 0 species 1 547146 0 Hydrogenobaculum sp. SN 115 species 1 547144 Hydrogenobaculum sp. HO 115 0 species 1 547145 0 Hydrogenobaculum sp. SHO 115 1 species 148 Hydrogenobaculum sp. Y04AAS1 0 380749 547143 Hydrogenobaculum sp. 3684 115 0 species 1 78 0 2713 1 genus 78 Aquifex aeolicus 0 63363 1 species 1485951 319 0 order 5 558314 0 Desulfurobacteriaceae 319 family 1 2 5 2 1 1 genus Desulfurobacterium 242 0 64159 64160 0 241 Desulfurobacterium thermolithotrophum species 1 genus 2 5 1 171868 Thermovibrio 75 0 1 species 0 70 Thermovibrio ammonificans 228745 2 clade 0 146 2498710 67814 0 146 phylum 2 146 0 693071 2 class order 2 693072 0 146 family 2 693073 0 146 genus 1 2 2 693074 0 146 Caldisericum species 1 693075 0 Caldisericum exile 144 0 492 200938 4 phylum 4 class 0 492 118001 1 10 4 order 0 492 Chrysiogenales 189769 family 1 5 3 189770 0 Chrysiogenaceae 482 0 477 Desulfurispirillum 393029 1 2 2 genus 936456 475 Desulfurispirillum indicum 0 species 1 1224 753130 Proteobacteria 0 phylum 1921 327 1 class 1 666 846 1236 0 Gammaproteobacteria 383285 5 order 0 572 1240482 family 68 1 5 1240483 0 572 Orbaceae genus 2 6 1 1193503 309 Gilliamella 0 1 species 0 303 Gilliamella apicola 1196095 195 Frischella 0 1335631 2 9 1 genus species 1 1267021 0 Frischella perrara 186 45 183 1 order 10646 Chromatiales 0 135613 0 Halothiobacillaceae 360 255526 1 4 4 family 1 1 3 genus 0 356 Halothiobacillus 109262 1 species 0 107 Halothiobacillus neapolitanus 927 no rank 1 2636392 0 248 species 1 1860122 248 Halothiobacillus sp. LS2 0 72276 0 Ectothiorhodospiraceae 4297 family 120 1 16 0 Spiribacter 341 1335745 4 1 3 genus 1335746 0 106 Spiribacter salinus species 1 species 1 1335757 0 Spiribacter curvatus 231 546 0 85108 1 genus Halorhodospira halophila 546 0 1053 1 species 1765964 202 0 genus 1 1 species 0 202 Acidihalobacter prosperus 160660 1 1 2 genus 0 Ectothiorhodospira 582 1051 no rank 1 2684909 0 581 1 species Ectothiorhodospira sp. BSL-9 581 0 1442136 genus 1 7 2 133193 0 Alkalilimnicola 687 Alkalilimnicola ehrlichii 680 0 351052 1 species 1819 Thioalkalivibrio 0 106633 6 1 38 genus 1 species Thioalkalivibrio versutus 433 0 106634 1 no rank 0 205 2621013 1 species 205 Thioalkalivibrio sp. K90mix 0 396595 1 species 661 Thioalkalivibrio sulfidiphilus 0 1033854 1 species 0 189 Thioalkalivibrio nitratireducens 186931 0 293 Thioalkalivibrio paradoxus 108010 1 species 4810 Chromatiaceae 0 1046 16 1 51 family 0 458 Thioflavicoccus 156885 5 1 2 genus Thioflavicoccus mobilis 453 0 80679 1 species 0 1145 53392 1 genus 1 species Candidatus Thiodictyon syntrophicum 1145 0 1166950 85076 0 542 Marichromatium genus 6 1 2 species 1 37487 0 536 Marichromatium purpuratum genus 2 2 1 85072 630 Allochromatium 0 1 species 628 Allochromatium vinosum 0 1049 4 1 4 genus 0 Nitrosococcus 418 1227 133539 0 187 Nitrosococcus halophilus species 1 1 species 0 Nitrosococcus oceani 119 1229 473531 0 Nitrosococcus watsonii 108 species 1 0 250 1980513 1 genus 0 250 Candidatus Nitrosoglobus terrae 1630141 1 species 1 no rank 679 0 82569 Chromatiaceae bacterium 2141T.STBD.0c.01a 679 0 1978339 1 species 637 Thiocystis 0 13724 2 10 1 genus Thiocystis violascens 627 0 73141 1 species family 3 3 1 1676141 Wenzhouxiangellaceae 247 0 1676142 Wenzhouxiangella 244 0 genus 2 4 1 1579979 0 240 Wenzhouxiangella marina species 1 no rank 2 451214 0 406 0 406 Thiohalobacter 1273155 8 1 2 genus species 1 585455 0 Thiohalobacter thiocyanaticus 398 81 Woeseiaceae 0 1738654 2 1 1 family 1 genus 0 80 1738655 1548547 0 Woeseia oceani 80 species 1 0 262 449719 1 family 1 genus 262 0 437504 437505 Granulosicoccus antarcticus 262 0 species 1 135618 Methylococcales 2715 0 order 12 2 1 403 0 Methylococcaceae 2713 family 1 53 11 Methylomonas 1707 0 416 5 1 14 genus Methylomonas denitrificans 294 0 1538553 1 species 1 no rank 0 504 2608980 1 species 0 504 Methylomonas sp. DH-1 1727196 1 species 0 Methylomonas koyamae 414 702114 species 1 421 481 Methylomonas methanica 0 genus 1 1 2 39773 0 425 Methylomicrobium species 1 271065 424 Methylomicrobium alcaliphilum 0 genus 1 4 2 413 0 273 Methylococcus 414 0 269 Methylococcus capsulatus species 1 1 genus 0 255 762296 species 1 1704499 255 Methylovulum psychrotolerans 0 Pseudomonadales 66723 0 72274 128 1 300 order family 85 385 1 135621 Pseudomonadaceae 57170 0 309 0 1849530 1 genus 1697053 Oblitimonas alkaliphila 309 0 species 1 80 1632 1 genus Pseudomonas 55206 0 286 0 399 Pseudomonas antarctica 219572 1 species species group 9 136843 7557 0 species 1 47878 0 Pseudomonas azotoformans 710 1 species 0 Pseudomonas veronii 320 76761 75612 342 Pseudomonas mandelii 0 species 1 species 1 294 0 4533 Pseudomonas fluorescens 200450 0 Pseudomonas trivialis 237 species 1 380021 502 Pseudomonas protegens 0 species 1 species 1 47879 346 Pseudomonas corrugata 0 200451 206 Pseudomonas poae 0 species 1 76758 0 361 Pseudomonas orientalis species 1 0 285 Pseudomonas cremoricolorata 157783 1 species 136841 0 8368 species group 6 1 species 0 Pseudomonas aeruginosa 3110 287 0 792 1232139 1 species subgroup 0 792 Pseudomonas furukawaii 1149133 1 species species 1 53412 654 Pseudomonas resinovorans 0 species 1 53408 0 Pseudomonas citronellolis 1161 species 1 300 Pseudomonas mendocina 2093 0 43263 0 Pseudomonas alcaligenes 558 species 1 136849 4859 0 species group 8 species subgroup 1 251695 0 2285 Pseudomonas syringae 2285 0 317 1 species no rank 1 2775504 259 0 species 1 1206777 Pseudomonas sp. Lz4W 259 0 0 297 Pseudomonas cichorii 36746 1 species species 1 46257 0 381 Pseudomonas avellanae 0 763 251698 2 species subgroup species 1 47877 0 Pseudomonas amygdali 367 species 1 29438 Pseudomonas savastanoi 396 0 539 Pseudomonas syringae group genomosp. 3 0 251701 1 species species 1 33069 Pseudomonas viridiflava 335 0 0 441 Pseudomonas psychrotolerans 237610 1 species 136842 2353 0 species group 2 587753 0 1887 Pseudomonas chlororaphis species 1 296 0 Pseudomonas fragi 466 species 1 198620 Pseudomonas koreensis 835 0 species 1 104087 0 591 Pseudomonas frederiksbergensis species 1 1 species 359 Pseudomonas alkylphenolica 0 237609 0 8124 136845 6 species group 303 0 4621 Pseudomonas putida species 1 0 Pseudomonas plecoglossicida 359 70775 1 species Pseudomonas fulva 571 0 47880 1 species 76759 0 1176 Pseudomonas monteilii species 1 1 species 478 Pseudomonas oryzihabitans 0 47885 0 Pseudomonas mosselii 919 78327 1 species 30 no rank 11852 0 196821 1 species Pseudomonas sp. StFLB209 519 0 1028989 species 1 2083051 198 Pseudomonas sp. SWI6 0 1 species 289 Pseudomonas sp. CC6-YY-74 0 1930532 species 1 1611770 0 403 Pseudomonas sp. MRSN12121 species 1 1259844 0 662 Pseudomonas sp. FGI182 0 Pseudomonas sp. CCOS 191 421 1649877 1 species 0 Pseudomonas sp. SWI44 233 2083053 1 species 0 475 Pseudomonas sp. TKP 1415630 1 species species 1 2069256 0 500 Pseudomonas sp. XWY-1 1827300 329 Pseudomonas sp. MYb193 0 species 1 1338689 0 373 Pseudomonas sp. JY-Q species 1 382 Pseudomonas sp. UW4 0 1207075 1 species 0 Pseudomonas sp. PONIH3 357 1636610 1 species species 1 2083052 Pseudomonas sp. SWI36 387 0 2049589 0 305 Pseudomonas sp. HLS-6 species 1 species 1 1283291 0 501 Pseudomonas sp. URMO17WK12:I11 1 species 0 184 Pseudomonas sp. M30-35 1981174 species 1 1294143 586 Pseudomonas sp. ATCC 13867 0 2083054 0 Pseudomonas sp. LG1D9 220 species 1 species 1 1898684 0 Pseudomonas sp. LPH1 493 1856685 Pseudomonas sp. TCU-HL1 570 0 species 1 species 1 1659194 0 Pseudomonas sp. GR 6-02 306 0 424 Pseudomonas sp. St29 1500687 1 species 0 Pseudomonas sp. Os17 410 1500686 1 species species 1 69328 336 Pseudomonas sp. VLB120 0 Pseudomonas sp. FDAARGOS_380 329 0 2018067 1 species 1 species 0 Pseudomonas sp. S-6-2 408 1931241 species 1 1534110 0 413 Pseudomonas sp. DR 5-09 1 species 0 Pseudomonas sp. LH1G9 388 2083055 2067572 451 Pseudomonas sp. NC02 0 species 1 0 1034 Pseudomonas brassicacearum 930166 1 species species 1 1788301 0 212 Pseudomonas versuta species 1 1853130 0 Pseudomonas silesiensis 268 species group 2 136846 3078 0 422 Pseudomonas balearica 0 74829 1 species species subgroup 1 578833 2656 0 316 2656 Pseudomonas stutzeri 0 species 1 1 species 0 Pseudomonas parafulva 583 157782 311 Pseudomonas knackmussii 0 65741 1 species 1 species 0 374 Pseudomonas rhizosphaerae 216142 1 species 0 336 Pseudomonas cerasi 1583341 1 species Pseudomonas lurida 309 0 244566 species 1 312306 0 252 Pseudomonas entomophila 794 Pseudomonas alcaliphila 0 101564 1 species 1270 0 351 3 subfamily 352 0 1270 Azotobacter genus 4 1 3 353 828 Azotobacter chroococcum 0 species 1 354 Azotobacter vinelandii 438 0 species 1 family 42 1 31 468 9253 Moraxellaceae 0 469 0 Acinetobacter 6504 genus 1 29 25 40215 0 Acinetobacter junii 392 species 1 species 1 40214 240 Acinetobacter johnsonii 0 species 1 1148157 186 Acinetobacter oleivorans 0 202950 86 0 species 1 0 Acinetobacter sp. ADP1 86 62977 1 strain 0 295 Acinetobacter bereziniae 106648 1 species 487316 111 Acinetobacter soli 0 species 1 Acinetobacter larvae 151 0 1789224 1 species 5 species group 2803 0 909768 48296 0 516 Acinetobacter pittii species 1 species 1 1785128 0 Acinetobacter lactucae 418 876 Acinetobacter baumannii 0 470 1 species species 1 106654 Acinetobacter nosocomialis 618 0 species 1 471 0 375 Acinetobacter calcoaceticus species 1 29430 492 Acinetobacter haemolyticus 0 196816 0 920 no rank 7 0 Acinetobacter sp. NCu2D-2 121 1608473 1 species 1636603 0 Acinetobacter sp. ACNIH1 122 species 1 Acinetobacter sp. TGL-Y2 163 0 1407071 1 species 1808001 0 Acinetobacter sp. LoGeW2-3 114 species 1 151 Acinetobacter sp. ACNIH2 0 1758189 1 species species 1 2079596 Acinetobacter sp. SWBY1 137 0 112 Acinetobacter sp. TTH0-4 0 1646498 1 species 108981 Acinetobacter schindleri 272 0 species 1 1324350 0 Acinetobacter equi 272 species 1 115 Acinetobacter radioresistens 0 40216 1 species Acinetobacter indicus 140 0 756892 1 species 497 Psychrobacter 1620 0 genus 11 56 1 330922 Psychrobacter cryohalolentis 121 0 species 1 196806 0 808 no rank 6 species 1 1720344 0 99 Psychrobacter sp. AntiMn-1 1 species 0 123 Psychrobacter sp. P2G3 1699622 species 1 1028416 0 Psychrobacter sp. DAB_AL43B 89 0 Psychrobacter sp. P11G5 241 1699624 1 species species 1 571800 0 89 Psychrobacter sp. G 349106 0 167 Psychrobacter sp. PRwf-1 species 1 261164 0 Psychrobacter alimentarius 163 species 1 334543 276 Psychrobacter arcticus 0 species 1 1 species 0 Psychrobacter urativorans 196 45610 5 1 28 genus 1098 Moraxella 0 475 480 0 Moraxella catarrhalis 96 species 1 species 1 34062 Moraxella osloensis 571 0 species 1 386891 0 Moraxella bovoculi 271 1 species Moraxella ovis 132 0 29433 order 30 1 1 135625 58129 Pasteurellales 0 0 58128 Pasteurellaceae 712 1 189 29 family 6 1 3 genus Haemophilus 50653 0 724 729 0 Haemophilus parainfluenzae 43369 species 1 249188 0 Haemophilus pittmaniae 2831 species 1 0 1170 2609962 1 no rank 1 species 0 Haemophilus sp. oral taxon 036 1170 712310 species 1 727 0 3010 Haemophilus influenzae 1 species 270 [Haemophilus] ducreyi 0 730 4 1 4 genus Mannheimia 1093 0 75984 219 0 2645054 1 no rank 1432056 Mannheimia sp. USDA-ARS-USMARC-1261 219 0 species 1 species 1 85404 Mannheimia varigena 459 0 1 species 0 411 Mannheimia haemolytica 75985 416916 0 1409 Aggregatibacter genus 6 1 3 732 1128 Aggregatibacter aphrophilus 0 species 1 714 0 Aggregatibacter actinomycetemcomitans 275 species 1 0 532 214906 1 genus 731 Histophilus somni 532 0 species 1 2 1 2 genus 1199 Bibersteinia 0 476528 47735 Bibersteinia trehalosi 1197 0 species 1 genus 1 697331 231 0 157673 0 [Mannheimia] succiniciproducens 231 species 1 2094023 394 0 genus 1 Glaesserella parasuis 394 0 738 1 species 155493 0 Gallibacterium 279 genus 2 1 2 species 1 750 277 Gallibacterium anatis 0 1152 Actinobacillus 0 713 5 16 1 genus species 1 715 Actinobacillus pleuropneumoniae 352 0 1 species Actinobacillus suis 237 0 716 270 Actinobacillus succinogenes 0 67854 1 species species 1 718 277 Actinobacillus equuli 0 745 997 Pasteurella 0 genus 3 1 10 204 Pasteurella dagmatis 0 754 1 species 1 species Pasteurella multocida 783 0 747 17 order 2443 0 118969 0 228 118968 3 family 1 no rank 35 0 134284 1592897 Coxiella-like endosymbiont 35 0 species 1 193 0 776 2 genus 1 species 0 129 Coxiella burnetii 777 1 no rank 0 64 2676648 1 species 0 64 Coxiella endosymbiont of Amblyomma americanum 325775 family 1 5 14 444 0 2215 Legionellaceae 12 1 2 genus 2102 Legionella 0 445 species 1 28087 125 Legionella sainthelensi 0 species 1 1867846 Legionella clemsonensis 235 0 29423 128 Legionella oakridgensis 0 species 1 121 Legionella spiritensis 0 452 1 species Legionella longbeachae 158 0 450 1 species 1 species Legionella endosymbiont of Polyplax serrata 38 0 2005262 Legionella lansingensis 208 0 45067 1 species species 1 66969 Legionella waltersii 85 0 Legionella fallonii 222 0 96230 1 species species 1 449 0 131 Legionella hackeliae 0 649 Legionella pneumophila 446 1 species genus 1 465 0 108 451 0 Tatlockia micdadei 108 species 1 order 183 1 51 135614 0 Xanthomonadales 22414 1 90 13 family 0 Rhodanobacteraceae 4145 1775411 70411 Frateuria 440 0 genus 2 1 2 species 1 81475 Frateuria aurantia 438 0 323413 Dokdonella 486 0 genus 2 2 1 Dokdonella koreensis 484 0 323415 1 species 1 genus 252 0 242605 242606 252 Luteibacter rhizovicinus 0 species 1 genus 1 21 4 231454 0 2029 Dyella 1379159 419 Dyella jiangningensis 0 species 1 species 1 445710 Dyella thiooxydans 618 0 1 species 0 971 Dyella japonica 231455 209 0 2233801 1 genus 0 209 Xanthomonadales bacterium D13 2021234 1 species 1 5 2 genus 0 Rhodanobacter 639 75309 species 1 666685 0 Rhodanobacter denitrificans 634 32033 18086 Xanthomonadaceae 0 family 37 124 1 2370 0 334 genus 1 2371 334 Xylella fastidiosa 0 species 1 genus 5 22 1 68 1753 Lysobacter 0 69 Lysobacter enzymogenes 403 0 species 1 1 species Lysobacter antibioticus 492 0 84531 1 species Lysobacter gummosus 424 0 262324 0 412 Lysobacter capsici 435897 1 species 0 Pseudoxanthomonas 1230 83618 5 1 3 genus 1 species 454 Pseudoxanthomonas spadix 0 415229 1 species Pseudoxanthomonas suwonensis 771 0 314722 1 genus 0 185 83614 0 185 Luteimonas sp. 100111 2006110 1 species 40323 Stenotrophomonas 6527 0 genus 9 114 1 995085 3081 0 species group 1 40324 0 3081 Stenotrophomonas maltophilia species 1 216778 395 Stenotrophomonas rhizophila 0 species 1 species 1 83617 0 393 Stenotrophomonas nitritireducens species 1 128780 0 671 Stenotrophomonas acidaminiphila 4 no rank 0 1873 196198 502 Stenotrophomonas sp. MYb57 0 1827305 1 species 1904944 0 Stenotrophomonas sp. LM091 507 species 1 2005046 0 565 Stenotrophomonas sp. WZN-1 species 1 299 Stenotrophomonas sp. KCTC 12332 0 1793721 1 species Xanthomonas 7933 0 338 17 1 377 genus 347 0 Xanthomonas oryzae 702 species 1 species group 2 643453 0 1760 0 1259 Xanthomonas citri 346 1 species 1 species Xanthomonas fuscans 501 0 366648 Xanthomonas albilineans 131 0 29447 1 species 56459 388 Xanthomonas vasicola 0 species 1 1 species 0 Xanthomonas axonopodis 199 53413 0 390 Xanthomonas vesicatoria 56460 1 species species 1 56458 346 Xanthomonas sacchari 0 Xanthomonas fragariae 320 0 48664 1 species 1 species Xanthomonas campestris 1210 0 339 Xanthomonas euvesicatoria 378 0 456327 1 species 56454 Xanthomonas hortorum 281 0 species 1 species 1 343 0 437 Xanthomonas translucens 1 species 446 Xanthomonas perforans 0 442694 Xanthomonas phaseoli 214 0 1985254 1 species species 1 366650 0 354 Xanthomonas alfalfae 1775403 0 Nevskiales 224 order 1 1 3 2 family 0 223 2689614 0 Steroidobacter 223 469322 2 1 2 genus 1 species 0 Steroidobacter denitrificans 221 465721 125 1 66 order 0 Oceanospirillales 14217 135619 0 2125 Alcanivoracaceae 224372 1 1 9 family 6 1 26 genus 1878 Alcanivorax 0 59753 1 species Alcanivorax pacificus 536 0 1306787 1094342 559 Alcanivorax xenomutans 0 species 1 2638842 0 63 no rank 1 Alcanivorax sp. NBRC 101098 63 0 1113728 1 species 1 species 0 611 Alcanivorax dieselolei 285091 83 Alcanivorax borkumensis 0 59754 1 species genus 4 1 2 2025617 0 246 Ketobacter 1917421 242 Ketobacter alkanivorans 0 species 1 135620 0 1695 Oceanospirillaceae family 1 3 11 genus 2 2 1 1537406 200 Bacterioplanes 0 1249553 Bacterioplanes sanyensis 198 0 species 1 1 genus 0 164 187492 1 species 0 164 Thalassolituus oleivorans 187493 0 133 188907 1 genus Oleispira antarctica 133 0 188908 1 species Marinomonas 534 0 28253 4 1 1 genus 1 species Marinomonas mediterranea 150 0 119864 196814 0 292 no rank 1 400668 0 Marinomonas sp. MWYL1 292 species 1 0 Marinomonas posidonica 91 936476 1 species genus 2 1 2 48075 661 Marinobacterium 0 1821621 659 Marinobacterium aestuarii 0 species 1 2 1 5 family 0 Saccharospirillaceae 636 255527 230494 0 174 Reinekea genus 1 1 2 Reinekea forsetii 173 0 1336806 1 species 1445504 0 460 Gynuella genus 1 4 2 1445505 0 456 Gynuella sunshinyii species 1 3 2 1 family 241 Oleiphilaceae 0 191033 2 1 5 genus Oleiphilus 239 0 141450 1 species 234 Oleiphilus messinensis 0 141451 5 1 6 family 0 Kangiellaceae 635 1920240 genus 5 9 1 261963 Kangiella 630 0 261964 Kangiella koreensis 124 0 species 1 species 1 914150 0 Kangiella geojedonensis 79 species 1 1144748 128 Kangiella sediminilitoris 0 1 species Kangiella profundi 290 0 1561924 family 77 1 30 28256 0 Halomonadaceae 8318 404432 451 Salinicola 0 genus 2 6 1 0 Salinicola tamaricis 445 1771309 1 species 3 no rank 0 146 114403 1 genus 0 114 235572 91844 0 114 Candidatus Portiera aleyrodidarum species 1 114185 0 2 genus 1 2 Candidatus Carsonella ruddii 0 114186 1 species 1 genus 30 0 1495768 Candidatus Evansia muelleri 30 0 1495769 1 species 48 1 2 genus 0 Halotalea 485 376488 437 Halotalea alkalilenta 0 376489 1 species 1 1 2 genus 0 242 Chromohalobacter 42054 1 species Chromohalobacter salexigens 241 0 158080 17 1 3 genus 0 768 Kushneria 504090 species 1 157779 0 Kushneria marisflavi 374 species 1 698828 377 Kushneria konosiri 0 genus 2 1 2 204286 0 625 Cobetia 28258 623 Cobetia marina 0 species 1 2745 0 5524 Halomonas genus 1 69 15 1178482 Halomonas huangheensis 756 0 species 1 1 species 0 607 Halomonas beimenensis 475662 species 1 1897729 Halomonas aestuarii 548 0 Halomonas chromatireducens 310 0 507626 1 species species 1 115561 Halomonas hydrothermalis 330 0 species 1 213554 Halomonas campaniensis 157 0 no rank 8 2609666 0 2747 2136172 Halomonas sp. SF2003 571 0 species 1 0 531 Halomonas sp. 1513 1883416 1 species species 1 1971364 Halomonas sp. GT 216 0 291 Halomonas sp. 'Soap Lake #6' 0 1949203 1 species 1504981 0 Halomonas sp. KO116 338 species 1 species 1 1610576 283 Halomonas sp. R57-5 0 226 Halomonas sp. GFAJ-1 0 1118153 1 species 1962264 291 Halomonas sp. 'Soap Lake #7' 0 species 1 224379 0 442 family 1 158481 442 0 genus 1 1 species Hahella chejuensis 442 0 158327 27 78 1 order Aeromonadales 17504 0 135624 101 1 26 family 0 Aeromonadaceae 17426 84642 373 0 43947 1 genus 1 species Tolumonas auensis 373 0 43948 225143 0 246 genus 2 1 species Oceanisphaera profunda 112 0 1416627 species 1 1903694 0 Oceanisphaera sp. AMac2203 134 genus 1 2 2 347533 0 Zobellella 755 0 753 Zobellella denitrificans 347534 1 species 734 Oceanimonas 0 129577 2 3 1 genus 731 0 2636315 1 no rank 511062 731 Oceanimonas sp. GK1 0 species 1 genus 725 1 18 642 0 15217 Aeromonas 648 462 Aeromonas caviae 0 species 1 905 Aeromonas salmonicida 0 645 1 species 1 species 0 687 Aeromonas schubertii 652 species 1 651 0 590 Aeromonas media 257493 0 4457 no rank 8 2033032 0 Aeromonas sp. CA23 824 species 1 Aeromonas sp. ASNIH3 500 0 1636608 1 species species 1 1636606 322 Aeromonas sp. ASNIH1 0 Aeromonas sp. CU5 482 0 2033033 1 species 1758179 Aeromonas sp. ASNIH5 604 0 species 1 1 species Aeromonas sp. ASNIH7 582 0 1920107 1636609 Aeromonas sp. ASNIH4 697 0 species 1 1 species 446 Aeromonas sp. ASNIH2 0 1636607 196024 0 1049 Aeromonas dhakensis species 1 0 1656 Aeromonas veronii 654 1 species 558964 Aeromonas aquatica 724 0 species 1 species 1 948519 0 570 Aeromonas rivipollensis 644 0 Aeromonas hydrophila 3392 species 1 order 24 13 1 1706369 4560 Cellvibrionales 0 Halieaceae 627 0 1706372 4 3 1 family 33 1 3 genus 0 Halioglobus 624 1217416 species 1 930805 0 240 Halioglobus japonicus 1 species 0 351 Halioglobus pacificus 930806 family 5 1 1 1706373 1079 Microbulbiferaceae 0 48073 Microbulbifer 1078 0 genus 4 2 1 0 Microbulbifer thermotolerans 293 252514 1 species 1 species 475 Microbulbifer aggregans 0 1769779 1 species 0 Microbulbifer agarilyticus 308 260552 Spongiibacteraceae 561 0 1706375 5 16 1 family 1 genus 0 116 1434050 Zhongshania aliphaticivorans 116 0 1470434 1 species 630749 164 0 genus 1 1 no rank 0 164 2631504 Spongiibacter sp. IMCC21906 164 0 1620392 1 species genus 7 1 2 1084558 0 265 Oceanicoccus Oceanicoccus sagamiensis 258 0 716816 1 species 2280 Cellvibrionaceae 0 1706371 9 1 6 family genus 1 316625 0 188 0 188 Saccharophagus degradans 86304 1 species 279 Simiduia 0 447467 2 6 1 genus 0 Simiduia agarivorans 273 447471 1 species genus 1 2036021 0 196 0 Agarilytica rhodophyticola 196 1737490 1 species 0 1492 10 3 genus 2 no rank 0 1051 2624793 1945512 Cellvibrio sp. PSBB023 215 0 species 1 species 1 1987723 0 Cellvibrio sp. PSBB006 836 species 1 155077 Cellvibrio japonicus 441 0 1 genus 0 119 2425 119 Teredinibacter turnerae 0 2426 1 species 3 4 1 order Cardiobacteriales 181 0 135615 0 177 Cardiobacteriaceae 868 2 1 2 family 869 0 175 genus 1 1 species 0 Dichelobacter nodosus 175 870 1386 0 118884 11 no rank genus 1 1608298 0 293 1 species Thiolapillus brandeum 293 0 1076588 clade 1 198346 104 0 1 species 104 Candidatus Baumannia cicadellinicola 0 186490 3 clade 0 272 32036 1541743 64 0 genus 1 386487 0 Candidatus Ruthia magnifica 64 species 1 species 1 410330 Calyptogena okutanii thioautotrophic gill symbiont 159 0 113267 0 49 Bathymodiolus septemdierum thioautotrophic gill symbiont species 1 3 1 1 genus 103 Candidatus Thioglobus 0 655184 species 1 1705394 60 Candidatus Thioglobus autotrophicus 0 1427364 0 Candidatus Thioglobus singularis 42 species 1 339 0 349742 1 genus 1 species 339 Sedimenticola thiotaurini 0 1543721 2 1 2 genus 0 275 Pseudohongiella 1524249 1 species 0 273 Pseudohongiella spirulinae 1249552 order 5 1 29 72273 0 Thiotrichales 4477 34064 Francisellaceae 2705 0 family 14 2 1 genus 1 1869285 0 88 species 1 594679 88 Allofrancisella guangzhouensis 0 262 0 2615 Francisella genus 12 1 12 573570 0 Francisella sp. TX077310 179 species 1 0 519 Francisella philomiragia 28110 1 species Francisella hispaniensis 132 0 622488 1 species Francisella noatunensis 312 0 657445 1 species 1 species Francisella halioticida 196 0 549298 species 1 1542390 0 Francisella sp. CA97-1460 87 species 1 954 0 Francisella persica 65 305 0 2610885 2 no rank 1 species 0 147 Francisella sp. MA067296 475375 species 1 1547445 Francisella sp. FSC1006 158 0 species 1 573569 0 177 Francisella sp. TX077308 Francisella tularensis 631 0 263 1 species 0 Piscirickettsiaceae 1464 135616 6 1 12 family 0 187 933 2 genus species 1 92245 0 Thiomicrospira aerophila 120 147268 Thiomicrospira cyclica 67 0 species 1 4 1 2 genus 0 Hydrogenovibrio 170 28884 0 Hydrogenovibrio crunogenus 166 39765 1 species 1 genus 271 0 1237 1238 0 Piscirickettsia salmonis 271 species 1 4 1 1 genus 400 Cycloclasticus 0 34067 species 1 1329899 Cycloclasticus zancles 163 0 2 no rank 236 0 2621467 species 1 385025 Cycloclasticus sp. P1 85 0 species 1 728003 Cycloclasticus sp. PY97N 151 0 2 genus 0 430 40222 Methylophaga frappieri 142 0 754477 1 species species 1 754476 0 288 Methylophaga nitratireducenticrescens 2 family 303 0 135617 1 genus 0 187 1021 Beggiatoa leptomitoformis 187 0 288004 1 species genus 1 40751 0 116 40754 116 Thioploca ingrica 0 species 1 503 1 238 order 0 145974 Enterobacterales 91347 0 Morganellaceae 9202 1903414 41 1 21 family 4 13 1 genus 795 Photorhabdus 0 29487 species 1 291112 258 Photorhabdus asymbiotica 0 574560 0 Photorhabdus temperata 269 species 1 species 1 29488 255 Photorhabdus luminescens 0 792 Providencia 0 586 4 1 3 genus 126385 0 188 Providencia alcalifaciens species 1 species 1 588 0 Providencia stuartii 400 Providencia rettgeri 201 0 587 1 species 637 0 38 genus 1 Arsenophonus symbiont of Lipoptena fortisetosa 38 0 634113 1 species 583 0 5153 Proteus genus 1 13 3 0 4833 Proteus mirabilis 584 1 species species 1 585 Proteus vulgaris 307 0 626 Xenorhabdus 1766 0 genus 6 31 1 0 Xenorhabdus poinarii 202 40577 1 species 1 species 0 427 Xenorhabdus hominickii 351679 Xenorhabdus nematophila 336 0 628 1 species species 1 40576 557 Xenorhabdus bovienii 0 351671 0 Xenorhabdus doucetiae 213 species 1 genus 1 37 2 581 0 617 Morganella 0 Morganella morganii 580 582 1 species family 6 1 14 1903412 0 4622 Hafniaceae 568 Hafnia 982 0 genus 3 2 1 0 333 2621980 1 no rank 1 species 0 333 Hafnia sp. CBA7124 1848580 569 Hafnia alvei 647 0 species 1 82982 296 Obesumbacterium 0 genus 2 1 3 species 1 82983 293 Obesumbacterium proteus 0 genus 8 1 91 635 Edwardsiella 3338 0 1 species Edwardsiella hoshinae 388 0 93378 species 1 1263550 0 499 Edwardsiella piscicida 1 species 0 Edwardsiella ictaluri 415 67780 725 Edwardsiella tarda 0 636 1 species 379 Edwardsiella anguillarum 0 1821960 1 species no rank 2 2676541 841 0 377 Edwardsiella sp. LADL05-105 0 1650654 1 species species 1 1578828 0 Edwardsiella sp. EA181011 464 family 37 85 1 1903411 17250 Yersiniaceae 0 genus 1 1745211 0 435 1639108 0 435 Chania multitudinisentens species 1 629 0 Yersinia 3833 genus 1 61 13 1 species 108 Yersinia aldovae 0 29483 species 1 29486 Yersinia ruckeri 372 0 Yersinia frederiksenii 663 0 29484 1 species species 1 28152 0 Yersinia kristensenii 264 species 1 630 Yersinia enterocolitica 836 0 1 species Yersinia rohdei 334 0 29485 2653513 179 0 no rank 1 1 species 0 Yersinia sp. FDAARGOS_228 179 1839800 631 0 Yersinia intermedia 192 species 1 1 species Yersinia aleksiciae 216 0 263819 1649845 608 0 species group 3 367190 0 153 Yersinia similis species 1 species 1 632 Yersinia pestis 170 0 633 0 285 Yersinia pseudotuberculosis species 1 613 Serratia 11523 0 genus 16 1 268 1 species 880 Serratia fonticola 0 47917 8 no rank 4169 0 2647522 768490 Serratia sp. AS12 149 0 species 1 Serratia sp. MYb239 694 0 2033438 1 species 1 species 507 Serratia sp. ATCC 39006 0 104623 0 640 Serratia sp. FGI94 671990 1 species 1 species 0 751 Serratia sp. SSNIH1 1758196 species 1 768493 0 Serratia sp. AS13 149 1327989 644 Serratia sp. FS14 0 species 1 1 species Serratia sp. SCBI 635 0 488142 82996 0 Serratia plymuthica 645 species 1 Serratia proteamaculans 382 0 28151 1 species 61651 0 Serratia ficaria 686 species 1 species 1 614 0 Serratia liquefaciens 491 0 715 Serratia rubidaea 61652 1 species 0 3287 Serratia marcescens 615 1 species genus 4 1 10 34037 932 Rahnella 0 no rank 2 2635087 0 655 1 species 393 Rouxiella sp. ERMR1:05 0 1805933 741091 0 Rahnella sp. Y9602 262 species 1 species 1 34038 0 267 Rahnella aquatilis genus 1 1565532 Rouxiella 9 0 genus 1 929812 433 0 929813 Gibbsiella quercinecans 433 0 species 1 1903410 8208 Pectobacteriaceae 0 family 20 49 1 204037 3119 Dickeya 0 genus 6 44 1 565 Dickeya fangzhongdai 0 1778540 1 species species 1 204038 301 Dickeya dadantii 0 1 species Dickeya zeae 730 0 204042 1 species 0 Dickeya dianthicola 340 204039 species 1 1089444 1139 Dickeya solani 0 genus 2 15 1 71655 Brenneria 797 0 1 species Brenneria goodwinii 782 0 1109412 genus 79 1 6 122277 0 Pectobacterium 3181 Pectobacterium parmentieri 372 0 1905730 1 species 0 281 Pectobacterium atrosepticum 29471 1 species 1 species 0 Pectobacterium carotovorum 1442 554 55208 0 335 Pectobacterium wasabiae species 1 species 1 2042057 Pectobacterium polaris 672 0 26 1 5 genus 0 Sodalis 1062 84565 1929246 47 Sodalis endosymbiont of Henestaris halophilus 0 species 1 species 1 63612 Sodalis glossinidius 341 0 species 1 1486991 0 Candidatus Sodalis pierantonius 293 1239307 0 Sodalis praecaptivus 355 species 1 451511 0 472 no rank 2 genus 1 18 2 702 0 Plesiomonas 472 703 Plesiomonas shigelloides 454 0 species 1 family 26 32 1 1903409 8710 Erwiniaceae 0 82986 0 Tatumella 275 genus 10 1 2 1 species 265 Tatumella citrea 0 53336 551 2400 Erwinia 0 genus 8 76 1 1922217 0 Candidatus Erwinia sp. ErCipseudotaxifoliae 54 species 1 species 1 182337 658 Erwinia billingiae 0 338565 0 Erwinia tasmaniensis 400 species 1 2622719 202 0 no rank 1 species 1 215689 202 Erwinia sp. Ejp617 0 1 species Erwinia amylovora 333 0 552 0 244 Erwinia pyrifoliae 79967 1 species 1 species 0 433 Erwinia gerundensis 1619313 1 genus 0 738 32199 1 species 0 738 Buchnera aphidicola 9 0 69 51228 1 genus 51229 0 Wigglesworthia glossinidia 69 species 1 Pantoea 4302 0 53335 11 162 1 genus species 1 66269 0 388 Pantoea stewartii 1 species 0 Pantoea alhagi 326 1891675 470934 Pantoea vagans 782 0 species 1 1 species 0 Pantoea rwandensis 330 1076550 1 species group 652 0 1654067 1 species 0 Pantoea agglomerans 652 549 3 no rank 0 1193 2630326 1 species 0 391 Pantoea sp. PSNIH2 1484157 592316 Pantoea sp. At-9b 535 0 species 1 1 species 0 267 Pantoea sp. PSNIH1 1484158 1235990 0 Candidatus Pantoea carbekii 45 species 1 424 Pantoea ananatis 0 553 1 species 2 genus 0 894 2100764 Pantoea gaviniae 511 0 665914 1 species 1 species 0 383 Pantoea calida 665913 family 1 1903416 0 208 82984 0 208 genus 1 1 species Pragia fontium 208 0 82985 Enterobacteriaceae 96799 0 543 116 497 1 family 570 0 Klebsiella 11767 genus 304 1 10 species 1 548 Klebsiella aerogenes 1012 0 1463165 635 Klebsiella quasipneumoniae 0 species 1 no rank 2 2608929 0 1421 1934254 0 863 Klebsiella sp. M5al species 1 1 species Klebsiella sp. LTGPAF-6F 558 0 1905288 0 590 Klebsiella quasivariicola 2026240 1 species 244366 0 1214 Klebsiella variicola species 1 571 Klebsiella oxytoca 2172 0 species 1 573 3352 Klebsiella pneumoniae 0 species 1 species 1 1134687 0 Klebsiella michiganensis 1067 genus 3 1 3 1330546 0 1492 Pluralibacter 1334193 489 [Enterobacter] lignolyticus 0 species 1 species 1 61647 0 Pluralibacter gergoviae 1000 590 0 2797 Salmonella genus 15 1 3 species 1 54736 0 278 Salmonella bongori 1 species 0 Salmonella enterica 2504 28901 genus 22 834 1 547 46724 Enterobacter 0 species group 12 354276 41583 0 Enterobacter ludwigii 302 0 299767 1 species 550 0 19529 Enterobacter cloacae species 1 0 Enterobacter cancerogenus 282 69218 1 species Enterobacter cloacae complex 'Hoffmann cluster IV' 327 0 1812935 1 species 61645 0 Enterobacter asburiae 1017 species 1 1 species 333 Enterobacter kobei 0 208224 0 946 2757714 3 no rank 1 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 387 0 2077137 2027919 Enterobacter cloacae complex bacterium 350 0 species 1 1 species 209 Enterobacter cloacae complex sp. ECNIH7 0 1915310 158836 0 Enterobacter hormaechei 18847 species 1 16483 3 Enterobacter cloacae complex 'Hoffmann cluster III' 805 0 1812934 1 subspecies subspecies 1 1296536 0 1559 Enterobacter xiangfangensis 2608935 4307 0 no rank 9 1 species 0 Enterobacter sp. ODB01 190 1827481 2051905 0 1708 Enterobacter sp. CRENT-193 species 1 1 species 373 Enterobacter sp. 638 0 399742 Enterobacter sp. R4-368 401 0 1166130 1 species species 1 1977566 Enterobacter sp. Crenshaw 203 0 268 Enterobacter sp. E20 0 1560339 1 species species 1 1692238 0 Enterobacter sp. FY-07 388 0 462 Enterobacter sp. SA187 1914861 1 species 1868135 Enterobacter sp. HK169 314 0 species 1 1330547 1998 Kosakonia 0 genus 5 17 1 497725 Kosakonia oryzae 308 0 species 1 Kosakonia cowanii 685 0 208223 1 species 1 species Kosakonia sacchari 481 0 1158459 species 1 283686 0 Kosakonia radicincitans 507 0 Lelliottia 1872 1330545 1 47 4 genus 69220 584 Lelliottia nimipressuralis 0 species 1 0 936 Lelliottia amnigena 61646 1 species 1907578 0 Lelliottia jeotgali 305 species 1 1 genus 0 231 409304 species 1 168169 0 Candidatus Ishikawaella capsulata 231 1 317 14 genus 0 Citrobacter 6885 544 1344959 0 3707 species group 7 1 species 0 730 Citrobacter braakii 57706 2077149 142 Citrobacter freundii complex sp. CFNIH9 0 species 1 species 1 67827 0 381 Citrobacter werkmanii 0 245 Citrobacter freundii complex sp. CFNIH3 2077147 1 species Citrobacter freundii complex sp. CFNIH2 283 0 2066049 1 species species 1 2077148 Citrobacter freundii complex sp. CFNIH4 249 0 546 0 Citrobacter freundii 1677 species 1 species 1 67825 0 335 Citrobacter rodentium 1 species 0 Citrobacter koseri 565 545 1 species 904 Citrobacter amalonaticus 0 35703 1 species 437 Citrobacter farmeri 0 67824 620 0 2644389 2 no rank Citrobacter sp. CFNIH10 323 0 1920110 1 species 1 species 297 Citrobacter sp. FDAARGOS_156 0 1702170 579 0 255 genus 1 species 1 61648 Kluyvera intermedia 255 0 0 608 1335483 1 genus 1 species 0 608 Shimwellia blattae 563 158483 0 1210 Cedecea genus 1 10 2 species 1 158822 0 Cedecea neteri 1200 1048757 0 151 genus 1 species 1 1048758 151 Candidatus Moranella endobia 0 36866 1964 0 no rank 5 species 1 693444 440 Enterobacteriaceae bacterium strain FGI 57 0 0 289 Enterobacteriaceae bacterium ENNIH1 2066051 1 species 0 Enterobacteriaceae bacterium ENNIH2 325 1920109 1 species species 1 891974 437 Plautia stali symbiont 0 1 species Enterobacteriaceae bacterium ENNIH3 473 0 1920128 1 genus 52 0 401618 1 species 52 Candidatus Riesia pediculicola 0 401619 genus 3 1 30 160674 1262 Raoultella 0 species 1 575 0 Raoultella planticola 307 Raoultella ornithinolytica 925 0 54291 1 species 1 40 4 genus 0 2246 Leclercia 83654 1 species 807 Leclercia adecarboxylata 0 83655 2627398 1399 0 no rank 2 0 Leclercia sp. LSNIH1 605 1920114 1 species species 1 1920116 0 794 Leclercia sp. LSNIH3 561 Escherichia 9126 0 genus 5 1 37 species 1 1499973 0 261 Escherichia marmotae species 1 564 0 Escherichia fergusonii 260 0 Escherichia albertii 612 208962 1 species species 1 562 0 7956 Escherichia coli Shigella 1178 0 620 4 1 91 genus 2629414 0 417 no rank 1 species 1 1813821 417 Shigella sp. PAMC 28760 0 622 0 Shigella dysenteriae 426 species 1 244 Shigella flexneri 0 623 1 species genus 45 1 8 413496 0 Cronobacter 3039 1 species Cronobacter condimenti 389 0 1163710 species 1 413501 0 Cronobacter muytjensii 527 species 1 535744 453 Cronobacter universalis 0 1 species 0 384 Cronobacter turicensis 413502 species 1 413503 295 Cronobacter malonaticus 0 species 1 28141 525 Cronobacter sakazakii 0 0 421 Cronobacter dublinensis 413497 1 species 18 no rank 1445 0 191675 18 clade 1445 0 84563 0 36 1906660 1 genus species 1 1778264 0 36 Candidatus Mikella endobia genus 1 1906657 15 0 1 species 15 Candidatus Doolittlea endobia 0 1778262 252 0 146507 4 clade species 1 1199245 109 secondary endosymbiont of Ctenarytaina eucalypti 0 134287 0 secondary endosymbiont of Heteropsylla cubana 26 species 1 568987 0 117 Candidatus Hamiltonella genus 3 1 2 114 Candidatus Hamiltonella defensa 0 138072 1 species genus 1 1 2 1906659 0 73 Candidatus Hoaglandella 1 species 72 Candidatus Hoaglandella endobia 0 1778263 1 genus 0 169 1682492 species 1 1410383 0 Candidatus Tachikawaea gelatinosa 169 clade 1 199891 6 0 1835721 0 secondary endosymbiont of Trabutina mannipara 6 species 1 1906661 56 0 genus 1 species 1 1070130 56 Candidatus Gullanella endobia 0 84564 0 838 clade 7 838 Candidatus Blochmannia 0 203804 7 1 1 genus 101534 0 183 Candidatus Blochmannia pennsylvanicus species 1 species 1 203907 28 Candidatus Blochmannia floridanus 0 Candidatus Blochmannia chromaiodes 185 0 251542 1 species 2 no rank 0 419 711328 264 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0 1505596 1 species 1505597 0 155 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus species 1 1 species Candidatus Blochmannia vafer 22 0 251535 33811 1061 0 no rank 2 0 682 gamma proteobacterium HdN1 83406 1 species 1248727 0 endosymbiont of unidentified scaly snail isolate Monju 379 species 1 order 4 7 1 1934945 338 Immundisolibacterales 0 1934946 Immundisolibacteraceae 331 0 family 3 1 1 genus 2 1 1 1934947 330 Immundisolibacter 0 species 1 1810504 Immundisolibacter cernigliae 329 0 6 1 28 order Acidiferrobacterales 653 0 1692040 0 625 Acidiferrobacteraceae 1692041 1 5 5 family 1 1 2 genus 0 Sulfuricaulis 415 1744881 1 species 0 414 Sulfuricaulis limicola 1620215 205 Sulfurifustis 0 1692042 2 2 1 genus 1 species Sulfurifustis variabilis 203 0 1675686 135623 Vibrionales 11047 0 order 42 1 1 0 Vibrionaceae 11046 641 1 121 41 family genus 3 657 0 881 1 species Photobacterium gaetbulicola 269 0 1295392 133 Photobacterium profundum 0 74109 1 species 1 species 0 Photobacterium damselae 479 38293 662 9159 Vibrio 0 genus 30 1 174 1 species 218 Vibrio tapetis 0 52443 0 Vibrio anguillarum 239 55601 1 species 553239 Vibrio breoganii 190 0 species 1 0 406 Vibrio cholerae 666 1 species species 1 29494 Vibrio furnissii 371 0 1 species 0 Vibrio nigripulchritudo 287 28173 species group 10 717610 3711 0 species 1 670 632 Vibrio parahaemolyticus 0 1 species 693 Vibrio alginolyticus 0 663 1 species Vibrio owensii 409 0 696485 691 240 Vibrio natriegens 0 species 1 2315253 0 584 species subgroup 2 150340 165 Vibrio antiquarius 0 species 1 0 419 Vibrio diabolicus 50719 1 species species 1 680 0 473 Vibrio campbellii 190895 0 222 Vibrio rotiferianus species 1 species 1 766224 0 Vibrio jasicida 159 669 Vibrio harveyi 299 0 species 1 0 Vibrio mimicus 356 674 1 species 1 species Vibrio coralliilyticus 399 0 190893 1 species Vibrio hyugaensis 133 0 1534743 0 Vibrio qinghaiensis 148 2025808 1 species Vibrio vulnificus 856 0 672 1 species 178 0 1891919 1 species group species 1 29498 0 178 Vibrio tubiashii species 1 687 0 Vibrio gazogenes 234 1 species 0 318 Vibrio fluvialis 676 1435069 0 Vibrio tritonius 160 species 1 no rank 2 2614977 286 0 species 1 2014742 155 Vibrio sp. 2521-89 0 species 1 1116375 0 Vibrio sp. EJY3 131 212663 0 186 Vibrio tasmaniensis species 1 1 species Vibrio scophthalmi 309 0 45658 0 179 2042066 1 genus 1 species Paraphotobacterium marinum 179 0 1755811 1 1 4 genus 0 470 Aliivibrio 511678 0 243 Aliivibrio wodanis 80852 1 species Aliivibrio fischeri 109 0 668 1 species species 1 40269 0 Aliivibrio salmonicida 117 genus 10 1 2 246861 0 236 Grimontia 226 Grimontia hollisae 0 673 1 species 0 17355 Alteromonadales 135622 43 1 102 order family 2 267891 0 238 0 238 Moritella 58050 6 1 2 genus 1 species 0 232 Moritella viscosa 80854 family 6 1 54 267893 558 Idiomarinaceae 0 10 1 5 genus 0 Idiomarina 504 135575 species 1 1096243 Idiomarina piscisalsi 89 0 0 311 2614829 2 no rank species 1 2055892 0 130 Idiomarina sp. X4 species 1 2100422 181 Idiomarina sp. OT37-5b 0 1 species 0 Idiomarina loihiensis 94 135577 267892 280 Ferrimonadaceae 0 family 2 2 1 278 0 44011 1 genus 1 species 0 Ferrimonas balearica 278 44012 267894 355 0 family 3 genus 3 1 1 67572 Psychromonas 355 0 2614957 0 104 no rank 1 104 Psychromonas sp. CNPT3 0 314282 1 species 1 species Psychromonas ingrahamii 250 0 357794 0 Colwelliaceae 1136 267889 2 1 9 family 1518149 0 201 Thalassotalea genus 3 1 2 Thalassotalea crassostreae 198 0 1763536 1 species 933 Colwellia 0 28228 6 1 1 genus 196834 536 0 no rank 3 species 1 1816219 172 Colwellia sp. PAMC 21821 0 58049 Colwellia sp. MT41 118 0 species 1 1816218 0 Colwellia sp. PAMC 20917 246 species 1 1 species 0 Colwellia beringensis 157 1967665 species 1 28229 239 Colwellia psychrerythraea 0 72275 Alteromonadaceae 6157 0 family 29 60 1 2 genus 0 481 89404 species 1 300231 Glaciecola nitratireducens 168 0 2618684 313 0 no rank 1 983545 Glaciecola sp. 4H-3-7+YE-5 313 0 species 1 2742 Marinobacter 3097 0 genus 10 1 41 0 Marinobacter hydrocarbonoclasticus 619 2743 1 species species 1 330734 0 Marinobacter psychrophilus 207 1874317 215 Marinobacter salinus 0 species 1 3 no rank 936 0 83889 1671721 236 Marinobacter sp. CP1 0 species 1 490759 0 327 Marinobacter sp. BSs20148 species 1 1749259 0 373 Marinobacter sp. LQ44 species 1 291 Marinobacter adhaerens 0 1033846 1 species 1420917 0 498 Marinobacter salarius species 1 0 290 Marinobacter similis 1420916 1 species Lacimicrobium 405 0 1751872 2 6 1 genus 1526571 Lacimicrobium alkaliphilum 399 0 species 1 genus 1 1 2 1621534 0 Paraglaciecola 258 species 1 326544 0 Paraglaciecola psychrophila 257 genus 24 1 2 261825 0 217 Agarivorans 0 Agarivorans gilvus 193 680279 1 species Alteromonas 1639 0 226 10 1 7 genus 1 species Alteromonas naphthalenivorans 88 0 715451 287094 134 Alteromonas addita 0 species 1 1 species 0 91 Alteromonas australica 589873 species 1 28108 0 353 Alteromonas macleodii 314275 0 366 Alteromonas mediterranea species 1 0 358 2614992 3 no rank 2058133 99 Alteromonas sp. MB-3u-76 0 species 1 1917158 0 Alteromonas sp. RW2A1 119 species 1 1777491 140 Alteromonas sp. Mac1 0 species 1 species 1 233316 0 Alteromonas stellipolaris 242 39 1 25 family 0 Shewanellaceae 4510 267890 genus 1 37 24 22 0 4471 Shewanella no rank 6 196818 0 770 0 75 Shewanella sp. Pdp11 2059264 1 species species 1 60480 134 Shewanella sp. MR-4 0 0 Shewanella sp. WE21 94 2029986 1 species 94122 0 Shewanella sp. ANA-3 223 species 1 species 1 351745 130 Shewanella sp. W3-18-1 0 species 1 60481 0 Shewanella sp. MR-7 114 species 1 62322 Shewanella baltica 533 0 species 1 70863 Shewanella oneidensis 178 0 359303 302 Shewanella loihica 0 species 1 1 species 0 Shewanella frigidimarina 111 56812 0 Shewanella woodyi 87 60961 1 species 1 species 280 Shewanella violacea 0 60217 0 128 Shewanella pealeana 70864 1 species 1 species 158 Shewanella sediminis 0 271097 0 440 Shewanella psychrophila 225848 1 species 2018305 0 Shewanella bicestrii 97 species 1 species 1 192073 0 Shewanella denitrificans 132 species 1 260364 161 Shewanella marisflavi 0 species 1 60478 0 377 Shewanella amazonensis 24 0 179 Shewanella putrefaciens species 1 Shewanella halifaxensis 225 0 271098 1 species 128 Shewanella japonica 0 93973 1 species 404011 Shewanella piezotolerans 148 0 species 1 1 1 25 family 0 Pseudoalteromonadaceae 4078 267888 genus 24 1 72 53246 Pseudoalteromonas 4077 0 249 Pseudoalteromonas luteoviolacea 0 43657 1 species species 1 267375 114 Pseudoalteromonas marina 0 43659 181 Pseudoalteromonas tetraodonis 0 species 1 1 species 0 Pseudoalteromonas agarivorans 119 176102 1 species 0 Pseudoalteromonas phenolica 83 161398 0 Pseudoalteromonas aliena 138 247523 1 species 1 species 0 Pseudoalteromonas nigrifaciens 173 28109 1 species Pseudoalteromonas issachenkonii 169 0 152297 43658 146 Pseudoalteromonas rubra 0 species 1 1 species 0 226 Pseudoalteromonas tunicata 314281 166935 0 141 Pseudoalteromonas translucida species 1 0 725 194690 5 no rank species 1 1514074 Pseudoalteromonas sp. NC201 187 0 0 Pseudoalteromonas sp. 13-15 133 1761891 1 species species 1 1720343 0 127 Pseudoalteromonas sp. 1_2015MBL_MicDiv 0 138 Pseudoalteromonas sp. Bsw20308 283699 1 species 1 species 0 Pseudoalteromonas sp. SM9913 140 234831 1 species 0 200 Pseudoalteromonas piratica 1348114 1 species 255 Pseudoalteromonas spongiae 0 298657 species 1 43662 0 337 Pseudoalteromonas piscicida Pseudoalteromonas espejiana 173 0 28107 1 species 394751 Pseudoalteromonas arctica 118 0 species 1 1 species 0 Pseudoalteromonas haloplanktis 152 228 Pseudoalteromonas atlantica 306 0 288 1 species subphylum 185 68525 0 76966 class 118 1 140 28221 Deltaproteobacteria 46060 0 0 3802 Desulfobacterales 213118 15 1 19 order 0 2343 Desulfobacteraceae 213119 5 1 10 family 896 893 Desulfococcus 0 genus 3 1 4 1 species 511 Desulfococcus oleovorans 0 181663 0 Desulfococcus multivorans 378 897 1 species 0 361 Desulfobacterium 2295 1 2 2 genus species 1 2296 0 359 Desulfobacterium autotrophicum 0 Desulfobacula 390 28222 1 1 2 genus 28223 389 Desulfobacula toluolica 0 species 1 1 1 2 genus 0 694 Desulfatibacillum 218207 species 1 259354 0 693 Desulfatibacillum alkenivorans 0 Desulfobulbaceae 1444 213121 3 1 8 family 109168 0 221 genus 1 species 1 84980 0 221 Desulfotalea psychrophila 0 608 Desulfurivibrio 427922 28 1 2 genus species 1 427923 0 Desulfurivibrio alkaliphilus 580 893 0 413 Desulfobulbus genus 1 3 2 1 species Desulfobulbus sp. ORNL 410 0 1986146 genus 2 1 1 53318 Desulfocapsa 199 0 species 1 65555 0 Desulfocapsa sulfexigens 198 4 8 1 order Desulfarculales 777 0 453227 family 3 1 1 453228 Desulfarculaceae 769 0 453229 0 Desulfarculus 768 genus 13 1 2 1 species 755 Desulfarculus baarsii 0 453230 36 1 171 order 16066 Myxococcales 0 29 12303 0 80811 24 suborder 31 0 6029 Myxococcaceae family 16 1 9 32 Myxococcus 3984 0 genus 5 1 142 1 species 667 Myxococcus xanthus 0 34 1 species Myxococcus hansupus 937 0 1297742 1 species 585 Myxococcus stipitatus 0 83455 33 1653 Myxococcus fulvus 0 species 1 0 2029 Corallococcus 83461 1 16 3 genus 1114 Corallococcus coralloides 0 184914 1 species 1 species 0 899 Myxococcus macrosporus 35 5 1 27 family 2559 Anaeromyxobacteraceae 0 1524215 2532 Anaeromyxobacter 0 161492 4 58 1 genus 1 species 1168 Anaeromyxobacter dehalogenans 0 161493 no rank 2 2620896 0 1306 species 1 447217 0 Anaeromyxobacter sp. K 843 0 463 Anaeromyxobacter sp. Fw109-5 404589 1 species 1524213 0 478 family 2 genus 2 24 1 1524214 Vulgatibacter 478 0 1391653 Vulgatibacter incomptus 454 0 species 1 family 8 29 1 39 3237 Archangiaceae 0 genus 1 42 0 967 species 1 43 0 Cystobacter fuscus 967 40 519 Stigmatella 0 genus 2 1 2 0 517 Stigmatella aurantiaca 41 1 species genus 2 3 1 44 808 Melittangium 0 83453 Melittangium boletus 805 0 species 1 0 914 Archangium 47 2 1 2 genus 1 species 912 Archangium gephyra 0 48 80812 0 2838 suborder 8 1 1 3 family 0 Sandaracinaceae 498 1055686 genus 2 1 4 1055688 497 Sandaracinus 0 species 1 927083 0 493 Sandaracinus amylolyticus family 5 1 27 49 2340 Polyangiaceae 0 1711 Sorangium 0 39643 2 7 1 genus 56 Sorangium cellulosum 1704 0 species 1 2 3 1 genus Chondromyces 602 0 50 species 1 52 599 Chondromyces crocatus 0 suborder 3 224462 754 0 0 754 Kofleriaceae 224464 4 1 3 family genus 30 1 2 162027 0 750 Haliangium species 1 80816 Haliangium ochraceum 720 0 213462 0 Syntrophobacterales 1542 order 3 1 7 family 7 1 4 213468 0 Syntrophaceae 1169 1 genus 0 274 60892 species 1 60893 Desulfobacca acetoxidans 274 0 genus 1 2357 525 0 1 species Desulfomonile tiedjei 525 0 2358 genus 1 43773 0 363 1 species 0 363 Syntrophus aciditrophicus 316277 2 family 370 0 213465 2 3 1 genus 370 Syntrophobacter 0 29526 1 species Syntrophobacter fumaroxidans 367 0 119484 213115 0 Desulfovibrionales 12813 order 214 1 24 family 1 27 4 213116 0 1180 Desulfomicrobiaceae genus 4 1 3 898 0 1153 Desulfomicrobium species 1 899 551 Desulfomicrobium baculatum 0 species 1 132132 598 Desulfomicrobium orale 0 149 0 213117 2 family 45662 0 149 Desulfohalobium genus 1 1 2 species 1 45663 148 Desulfohalobium retbaense 0 Desulfovibrionaceae 11270 0 194924 17 57 1 family 219 0 41707 1 genus 1 species 0 Lawsonia intracellularis 219 29546 1 genus 397 0 2794998 880 0 Desulfovibrio salexigens 397 species 1 2035811 0 2072 Pseudodesulfovibrio genus 3 1 4 1 species 0 488 Pseudodesulfovibrio profundus 57320 0 Pseudodesulfovibrio indicus 1093 1716143 1 species 1 species 0 Pseudodesulfovibrio aespoeensis 488 182210 1 genus 0 445 2582840 0 Desulfovibrio africanus 445 873 1 species genus 41 1 9 872 0 8080 Desulfovibrio species 1 58180 Desulfovibrio alaskensis 739 0 44742 1029 Desulfovibrio fairfieldensis 0 species 1 0 437 2593640 1 no rank species 1 631220 Desulfovibrio sp. G11 437 0 species 1 876 0 1502 Desulfovibrio desulfuricans 184917 709 Desulfovibrio magneticus 0 species 1 0 Desulfovibrio vulgaris 1912 881 1 species 1 species 258 Candidatus Desulfovibrio trichonymphae 0 1725232 901 Desulfovibrio piger 1453 0 species 1 order 24 148 1 69541 10313 Desulfuromonadales 0 213421 3563 Desulfuromonadaceae 0 family 9 113 1 5 1 31 genus Pelobacter 2318 0 18 1 species 0 324 Pelobacter carbinolicus 19 species 1 29542 0 Pelobacter acetylenicus 558 412 0 2620299 1 no rank 0 Pelobacter sp. SFB93 412 1842532 1 species species 1 29543 Pelobacter propionicus 993 0 1 8 3 genus 0 Desulfuromonas 1132 890 1 no rank 551 0 2614637 1823759 Desulfuromonas sp. DDH964 551 0 species 1 0 573 Desulfuromonas soudanensis 1603606 1 species 213422 Geobacteraceae 6602 0 family 14 16 1 0 Geoalkalibacter 379 392332 1 1 2 genus 0 Geoalkalibacter subterraneus 378 483547 1 species genus 11 145 1 28231 6207 Geobacter 0 1 species 0 638 Geobacter bemidjiensis 225194 species 1 313985 Geobacter lovleyi 660 0 2627627 1515 0 no rank 2 1 species 0 Geobacter sp. M18 909 443143 443144 606 Geobacter sp. M21 0 species 1 species 1 35554 Geobacter sulfurreducens 501 0 351604 0 Geobacter uraniireducens 577 species 1 species 1 28232 665 Geobacter metallireducens 0 0 497 Geobacter anodireducens 1340425 1 species species 1 345632 0 659 Geobacter pickeringii species 1 1203471 0 350 Geobacter daltonii 213113 607 0 order 3 family 3 117942 607 0 1 1 2 genus 0 Desulfurella 432 33001 Desulfurella acetivorans 431 0 33002 1 species 1 genus 175 0 84404 species 1 84405 Hippea maritima 175 0 29547 0 Epsilonproteobacteria 30906 class 15 1 67 30496 Campylobacterales 0 213849 62 268 1 order 72294 25638 Campylobacteraceae 0 family 41 1708 1 57665 Sulfurospirillum 1110 0 genus 9 51 1 65553 134 Sulfurospirillum deleyianum 0 species 1 3 no rank 434 0 2618290 0 Sulfurospirillum sp. UCH001 161 1581011 1 species 1 species 0 Sulfurospirillum sp. SL2-1 136 1986224 species 1 220622 137 Sulfurospirillum sp. JPD-1 0 Sulfurospirillum halorespirans 125 0 194424 1 species species 1 44674 0 86 Sulfurospirillum barnesii 0 184 Sulfurospirillum multivorans 66821 1 species 366522 Sulfurospirillum cavolei 96 0 species 1 no rank 5 2321108 0 1861 genus 3 6 1 28196 910 Arcobacter 0 0 642 Arcobacter butzleri 28197 1 species 0 Arcobacter nitrofigilis 262 28199 1 species 622 0 2321207 1 no rank 1 species 622 Arcobacter sp. L 0 944547 2321187 0 329 genus 1 1850254 329 Arcobacter sp. LPB0137 0 species 1 26 1 127 genus Campylobacter 20959 0 194 196 Campylobacter fetus 591 0 species 1 species 1 28898 154 Campylobacter helveticus 0 0 8288 Campylobacter jejuni 197 1 species 1 species 0 384 Campylobacter pinnipediorum 1965231 75658 Campylobacter lanienae 459 0 species 1 206 324 Campylobacter sputorum 0 species 1 Campylobacter cuniculorum 209 0 374106 1 species 1 species 0 Campylobacter iguaniorum 118 1244531 species 1 824 0 148 Campylobacter gracilis species 1 200 Campylobacter curvus 128 0 species 1 522485 69 Campylobacter avium 0 488546 0 200 Campylobacter peloridis species 1 1 species 0 Campylobacter insulaenigrae 81 260714 species 1 76517 262 Campylobacter hominis 0 species 1 201 Campylobacter lari 499 0 142 Campylobacter concisus 0 199 1 species 827 0 101 Campylobacter ureolyticus species 1 1 species 62 Campylobacter volucris 0 1031542 4 no rank 526 0 2593542 species 1 1500960 257 Campylobacter sp. RM16704 0 1 species 77 Campylobacter sp. RM6137 0 1660073 0 Campylobacter sp. RM8964 87 1660074 1 species 1660076 0 Campylobacter sp. RM12175 105 species 1 497724 0 Campylobacter subantarcticus 192 species 1 Campylobacter coli 7745 0 195 1 species 0 Campylobacter hyointestinalis 150 198 1 species family 3 2771471 0 832 0 441 202746 2 genus 202747 233 Sulfurimonas autotrophica 0 species 1 Sulfurimonas denitrificans 208 0 39766 1 species genus 1 286130 0 391 1 species Sulfuricurvum kujiense 391 0 148813 72293 0 3027 family 13 genus 1 843 0 307 307 Wolinella succinogenes 0 844 1 species genus 1 16 12 209 0 2720 Helicobacter 1 no rank 0 187 2593540 222136 187 Helicobacter sp. MIT 01-6242 0 species 1 1 species 0 Helicobacter acinonychis 160 212 species 1 76936 123 Helicobacter typhlonius 0 0 Helicobacter pylori 1015 210 1 species 214 0 Helicobacter felis 105 species 1 138563 202 Helicobacter cetorum 0 species 1 0 107 Helicobacter himalayensis 1591088 1 species species 1 213 0 162 Helicobacter cinaedi 0 156 Helicobacter bilis 37372 1 species 1 species Helicobacter hepaticus 323 0 32025 species 1 217 0 Helicobacter mustelae 164 family 4 2771472 731 0 1 genus 308 0 269260 0 Nitratifractor salsuginis 308 269261 1 species 265570 0 423 Sulfurovum genus 1 1 3 206403 264 Sulfurovum lithotrophicum 0 species 1 no rank 1 2646778 158 0 387093 158 Sulfurovum sp. NBC37-1 0 species 1 395 Nautiliales 0 235899 4 1 1 order family 1 2795691 111 0 genus 1 269258 0 111 no rank 1 2624044 111 0 387092 0 111 Nitratiruptor sp. SB155-2 species 1 family 2 1 2 224467 Nautiliaceae 283 0 1 genus 281 0 191291 281 Nautilia profundicola 0 244787 1 species 28211 154104 Alphaproteobacteria 0 class 530 1 434 339 0 1921002 4 order 0 137 1777752 1 family 1521255 0 137 genus 1 137 Candidatus Paracaedibacter acanthamoebae 0 91604 1 species 1 family 0 95 44746 95 0 204454 1 no rank 1 species 0 95 endosymbiont of Acanthamoeba sp. UWC8 86106 14 1 2 family 0 107 Caedimonadaceae 2100208 genus 1 1509243 93 0 1509244 0 Candidatus Nucleicultrix amoebiphila 93 species 1 2 order 376 0 2800059 2800061 376 0 family 2 genus 2 1 1 74317 Maricaulis 376 0 species 1 74318 Maricaulis maris 375 0 204455 0 31504 Rhodobacterales order 1 132 81 31989 Rhodobacteraceae 31372 0 family 80 546 1 159345 512 0 genus 1 1 species 0 512 Roseibacterium elongatum 159346 9 82 1 genus Paracoccus 3734 0 265 1 species 0 Paracoccus aminovorans 288 34004 1077935 Paracoccus zhejiangensis 438 0 species 1 1 no rank 0 406 246570 1 species Paracoccus sp. BM15 406 0 1529068 1 species Paracoccus yeei 766 0 147645 1 species 0 383 Paracoccus contaminans 1945662 266 632 Paracoccus denitrificans 0 species 1 2065379 353 Paracoccus sp. CBA4604 0 species 1 0 386 Paracoccus aminophilus 34003 1 species 74032 0 665 Antarctobacter genus 1 1 2 species 1 74033 Antarctobacter heliothermus 664 0 1060 0 Rhodobacter 2401 genus 7 1 5 no rank 2 196779 0 789 602 Rhodobacter sp. CZR27 0 2033869 1 species 0 187 Rhodobacter sp. LPB0142 1850250 1 species 1 species 0 Rhodobacter sphaeroides 1183 1063 species 1 1061 0 422 Rhodobacter capsulatus genus 2 1 2 299261 0 629 Tateyamaria 0 627 Tateyamaria omphalii 299262 1 species genus 1 285107 305 0 species 1 1915078 305 Thioclava nitratireducens 0 2 40 1 genus Marinovum 519 0 367771 1 species Marinovum algicola 479 0 42444 1 genus 551 0 1649279 551 Ruegeria mobilis 0 379347 1 species genus 1 1579315 298 0 1 species 0 Halocynthiibacter arcticus 298 1579316 0 Confluentimicrobium 535 1609958 1 4 2 genus 1 no rank 0 531 2643318 0 531 Confluentimicrobium sp. EMB200-NS6 1609966 1 species 53945 0 Octadecabacter 478 genus 1 1 4 species 1 1217908 0 Octadecabacter antarcticus 162 species 1 53946 127 Octadecabacter arcticus 0 188 Octadecabacter temperatus 0 1458307 1 species 5 26 1 genus Phaeobacter 3611 0 302485 60890 1357 Phaeobacter gallaeciensis 0 species 1 species 1 1580596 0 795 Phaeobacter piscinae 221822 1115 Phaeobacter inhibens 0 species 1 species 1 1844006 0 318 Phaeobacter porticola 3 6 1 genus Ketogulonicigenium 547 0 92944 1 species 0 Ketogulonicigenium robustum 264 92947 1 species Ketogulonicigenium vulgare 277 0 92945 0 331 1284657 1 genus 1 species 0 331 Planktomarina temperata 1284658 0 624 Roseovarius 74030 1 1 2 genus 215743 0 623 Roseovarius mucosus species 1 34008 Rhodovulum 1574 0 genus 4 1 4 2 no rank 0 920 2631432 species 1 308754 593 Rhodovulum sp. MB263 0 0 327 Rhodovulum sp. P5 1564506 1 species species 1 35806 Rhodovulum sulfidophilum 650 0 1 genus 488 0 188905 0 488 2645469 1 no rank 1 species 488 Jannaschia sp. CCS1 0 290400 97050 0 1202 Ruegeria genus 1 13 3 Ruegeria pomeroyi 608 0 89184 1 species 0 581 2625375 1 no rank 1 species 0 581 Ruegeria sp. TM1040 292414 0 461 1097466 1 genus 1335048 Defluviimonas alba 461 0 species 1 genus 1 119541 0 182 species 1 441209 0 182 Rhodobaca barguzinensis genus 1 360528 468 0 1250539 0 468 Pelagibaca abyssi species 1 60136 1001 0 genus 2 0 Sulfitobacter pseudonitzschiae 538 1402135 1 species 0 463 196795 1 no rank 1917485 463 Sulfitobacter sp. AM1-D1 0 species 1 9 1 2 genus 0 727 Pannonibacter 227873 species 1 121719 Pannonibacter phragmitetus 718 0 genus 1 191028 0 413 1 species 0 Leisingera methylohalidivorans 413 133924 1 genus 0 616 2211641 1 species 0 Loktanella vestfoldensis 616 245188 58842 1208 0 genus 1 1 no rank 0 1208 2624628 2009329 1208 Sagittula sp. P11 0 species 1 0 1156 263377 2 genus 1 species 578 Thiobacimonas profunda 0 1229727 0 578 2640570 1 no rank species 1 1792508 578 Yangia sp. CCB-MM3 0 2433 Roseobacter 943 0 genus 3 80 1 42443 0 500 Roseobacter litoralis species 1 2434 0 Roseobacter denitrificans 363 species 1 genus 2 1 1 1759396 Marivivens 470 0 469 0 2622455 1 no rank 1 species 0 Marivivens sp. JLT3646 469 1920883 5 5 1 genus Celeribacter 1516 0 875170 1411902 0 Celeribacter manganoxidans 373 species 1 1208324 Celeribacter indicus 495 0 species 1 species 1 1397108 0 236 Celeribacter marinus species 1 1758178 407 Celeribacter ethanolicus 0 2 no rank 1021 0 58840 species 1 1904441 Rhodobacteraceae bacterium 437 0 0 584 Rhodobacteraceae bacterium QY30 2033435 1 species genus 2 1 1 309512 468 Dinoroseobacter 0 1 species 0 467 Dinoroseobacter shibae 215813 4 1 6 genus 1172 Labrenzia 0 478070 2 no rank 0 753 2648686 Labrenzia sp. VG12 251 0 2021862 1 species 1674922 0 Labrenzia sp. CP4 502 species 1 187304 413 Labrenzia aggregata 0 species 1 8 1 3 order 0 Magnetococcales 252 1191478 2 7 1 family 244 Magnetococcaceae 0 1191479 1 genus 0 237 162171 Magnetococcus marinus 237 0 1124597 1 species 0 618 2800060 4 order family 4 69657 618 0 0 130 2723 1 genus 130 Hirschia baltica 0 2724 1 species 3 1 15 genus Hyphomonas 488 0 85 2630699 0 171 no rank 1 1906738 0 Hyphomonas sp. Mor2 171 species 1 Hyphomonas neptunium 302 0 81032 1 species Rickettsiales 3246 0 766 52 6 1 order 1699067 0 163 no rank 1 1528098 Rickettsiales bacterium Ac37b 163 0 species 1 family 22 1 1 942 1254 Anaplasmataceae 0 0 180 768 3 genus species 1 770 26 Anaplasma marginale 0 species group 1 106179 141 0 1 species 141 Anaplasma phagocytophilum 0 948 1 species 0 13 Anaplasma centrale 769 33993 104 Neorickettsia 0 genus 4 1 2 951 0 Neorickettsia sennetsu 37 species 1 25 Neorickettsia helminthoeca 0 33994 1 species 1 species 0 40 Neorickettsia risticii 950 tribe 8 952 415 0 genus 11 1 8 953 0 Wolbachia 415 7 no rank 404 0 2640676 species 1 77551 0 30 Wolbachia endosymbiont of Onchocerca volvulus 1 species 18 Wolbachia endosymbiont of Brugia malayi 0 80849 Wolbachia endosymbiont of Drosophila melanogaster 42 0 163164 1 species 246273 0 Wolbachia endosymbiont of Cimex lectularius 47 species 1 species 1 77038 0 171 Wolbachia endosymbiont of Drosophila simulans 0 Wolbachia endosymbiont of Onchocerca ochengi 30 100901 1 species species 1 66084 Wolbachia sp. wRi 66 0 943 0 554 Ehrlichia genus 2 1 6 no rank 1 106181 0 68 Ehrlichia sp. HF 68 0 391036 1 species 4 species group 0 484 106178 1 species 0 153 Ehrlichia ruminantium 779 species 1 945 Ehrlichia chaffeensis 121 0 Ehrlichia muris 66 0 35795 1 species species 1 944 Ehrlichia canis 144 0 family 1 1328881 39 0 genus 1 411566 0 39 1 species 39 Candidatus Midichloria mitochondrii 0 234827 family 27 1 2 775 1784 Rickettsiaceae 0 tribe 25 33988 0 1704 Rickettsia 1380 0 780 23 138 1 genus species group 17 114277 0 440 1 species 0 Rickettsia felis 69 42862 1 species 0 Rickettsia africae 14 35788 786 0 29 Rickettsia akari species 1 47589 0 Rickettsia peacockii 59 species 1 109232 0 Rickettsia monacensis 51 species 1 1 species 0 Rickettsia heilongjiangensis 5 226665 1 species 0 Rickettsia slovaca 2 35794 0 2 Rickettsia massiliae 35791 1 species 787 Rickettsia australis 38 0 species 1 Rickettsia conorii 27 0 781 1 species 0 Rickettsia amblyommatis 72 33989 1 species Rickettsia parkeri 12 0 35792 1 species species 1 33992 0 17 Rickettsia rhipicephali 1 species 0 Rickettsia rickettsii 12 783 Rickettsia montanensis 25 0 33991 1 species species 1 1105106 0 Rickettsia philipii 5 Rickettsia japonica 1 0 35790 1 species species group 2 114292 303 0 0 Rickettsia prowazekii 98 782 1 species 1 species 205 Rickettsia typhi 0 785 1 no rank 0 207 114295 species 1 337479 Rickettsia endosymbiont of Bemisia tabaci 207 0 species group 2 1129742 0 292 species 1 788 51 Rickettsia canadensis 0 0 241 Rickettsia bellii 33990 1 species 0 324 Orientia 69474 1 1 2 genus species 1 784 323 Orientia tsutsugamushi 0 78 0 2115980 1 genus species 1 2115978 0 78 Candidatus Phycorickettsia trachydisci 22011 Rhodospirillales 0 204441 63 1 292 order Acetobacteraceae 8531 0 433 33 154 1 family genus 1 1602345 0 249 species 1 1510841 Parasaccharibacter apium 249 0 5 19 1 genus 1500 Komagataeibacter 0 1434011 33995 0 196 Komagataeibacter europaeus species 1 1 species 0 Komagataeibacter xylinus 801 28448 1 species 0 232 Komagataeibacter nataicola 265960 1 species 252 Komagataeibacter medellinensis 0 1177712 genus 1 46 8 434 0 Acetobacter 2204 136 Acetobacter senegalensis 0 446692 1 species 1633874 Acetobacter oryzifermentans 217 0 species 1 species 1 1076596 0 Acetobacter persici 233 species 1 104102 0 Acetobacter tropicalis 204 species 1 438 0 Acetobacter pasteurianus 877 subgenus 1 151157 285 0 species 1 435 Acetobacter aceti 285 0 species 1 65959 206 Acetobacter pomorum 0 3 1 22 genus 479 Acidiphilium 0 522 214 Acidiphilium multivorum 0 62140 1 species species 1 524 0 243 Acidiphilium cryptum 441 0 Gluconobacter 770 genus 4 1 3 species 1 318683 Gluconobacter albidus 210 0 species 1 442 Gluconobacter oxydans 556 0 4 1 2 genus 0 Granulibacter 731 364409 1 species Granulibacter bethesdensis 727 0 364410 0 433 Gluconacetobacter 89583 1 1 2 genus 33996 0 Gluconacetobacter diazotrophicus 432 species 1 153497 Kozakia 349 0 genus 2 1 1 1 species 0 Kozakia baliensis 348 153496 125216 0 Roseomonas 1289 genus 1 39 3 257708 0 Roseomonas gilardii 566 species 1 2617492 0 684 no rank 1 1 species 0 684 Roseomonas sp. FDAARGOS_362 2018065 Neoasaia 212 0 320496 2 1 1 genus species 1 320497 0 211 Neoasaia chiangmaiensis 161 0 91914 1 genus 1 species 0 Asaia bogorensis 161 91915 family 29 216 1 41295 13188 Rhodospirillaceae 0 670 Thalassospira 0 168934 3 1 4 genus species 1 2048283 Thalassospira sp. CSC3H3 338 0 1 species 0 Thalassospira xiamenensis 328 220697 186 0 1804663 1 genus 1 species 0 Haematospirillum jordaniae 186 1549855 1081 0 Rhodospirillum 1238 genus 13 1 3 1085 0 Rhodospirillum rubrum 550 species 1 34018 0 675 Rhodospirillum centenum species 1 2 17 1 genus 837 Tistrella 0 171436 1 species 0 Tistrella mobilis 820 171437 46 1 5 genus 0 2639 Magnetospirillum 13134 1 species 712 Magnetospirillum gryphiswaldense 0 55518 no rank 2 2617991 1099 0 1639348 0 488 Magnetospirillum sp. ME-1 species 1 611 Magnetospirillum sp. XM-1 0 1663591 1 species Magnetospirillum magneticum 782 0 84159 1 species 0 Nitrospirillum 1366 1543705 50 1 2 genus 1 species 0 1316 Nitrospirillum amazonense 28077 1612157 Pararhodospirillum 287 0 genus 2 1 1 0 286 Pararhodospirillum photometricum 1084 1 species 191 0 4629 Azospirillum genus 54 1 5 192 0 Azospirillum brasilense 1434 species 1 1226968 Azospirillum humicireducens 415 0 species 1 193 0 Azospirillum lipoferum 1670 species 1 528244 0 1056 Azospirillum thiophilum species 1 1182780 0 287 genus 1 1 no rank 287 0 2685734 1288970 0 Magnetospira sp. QH-2 287 species 1 0 Niveispirillum 683 1543704 1 16 2 genus 667 Niveispirillum cyanobacteriorum 0 1612173 1 species genus 1 1 2 1263978 0 150 Candidatus Endolissoclinum species 1 1263979 0 149 Candidatus Endolissoclinum faulkneri 0 349 54526 6 order 5 2 1 family Pelagibacteraceae 264 0 1655514 2 no rank 160 0 1655516 species 1 859653 111 alpha proteobacterium HIMB5 0 744985 49 alpha proteobacterium HIMB59 0 species 1 genus 2 198251 102 0 198252 Candidatus Pelagibacter ubique 63 0 species 1 no rank 1 2647897 39 0 1002672 Candidatus Pelagibacter sp. IMCC9063 39 0 species 1 0 85 2045213 1 genus 0 85 Candidatus Fonsibacter ubiquis 1925548 1 species 203 627 1 order 64182 Rhizobiales 0 356 no rank 5 119042 1378 0 0 482 Hartmannibacter 1572860 3 1 2 genus 1 species Hartmannibacter diazotrophicus 479 0 1482074 genus 1 1484898 0 501 species 1 1384459 0 Methyloceanibacter caenitepidi 501 1734920 395 Pseudorhodoplanes 0 genus 2 1 1 1 species 0 394 Pseudorhodoplanes sinuspersici 1235591 0 2832 Brucellaceae 118882 17 1 20 family 1 365 14 genus 0 972 Brucella 234 1 species 0 Brucella melitensis 45 29459 species 1 36855 Brucella canis 34 0 species 1 235 22 Brucella abortus 0 species 1 236 0 16 Brucella ovis species 1 444163 0 Brucella microti 26 0 Brucella pinnipedialis 37 120576 1 species 2632610 237 0 no rank 4 1844051 0 Brucella sp. 09RB8910 60 species 1 1 species 0 64 Brucella sp. 141012304 1885919 1891098 0 18 Brucella sp. 2002734562 species 1 species 1 1149952 Brucella sp. 09RB8471 95 0 65 Brucella vulpis 0 981386 1 species 0 Brucella suis 31 29461 1 species 0 94 Brucella ceti 120577 1 species genus 5 1 6 528 1843 Ochrobactrum 0 571256 0 499 Ochrobactrum pituitosum species 1 species 1 419475 0 466 Ochrobactrum pseudogrignonense species 1 271865 Ochrobactrum sp. A44 397 0 529 Ochrobactrum anthropi 475 0 species 1 4 6 1 family 1040 Chelatococcaceae 0 2036754 1 20 3 genus 0 1034 Chelatococcus 28209 no rank 1 2638111 579 0 1 species 0 Chelatococcus sp. CO-6 579 1702325 1 species 0 435 Chelatococcus daeguensis 444444 family 7 9 1 255475 Aurantimonadaceae 1900 0 1 42 4 genus 0 1491 Martelella 293088 2629616 0 506 no rank 1 species 1 686597 0 506 Martelella sp. AD-3 293089 Martelella mediterranea 412 0 species 1 1 species Martelella endophytica 531 0 1486262 414371 0 Aureimonas 400 genus 1 2 2 0 398 2615206 1 no rank 1 species Aureimonas sp. AU20 398 0 1349819 Rhizobiaceae 21066 0 82115 51 306 1 family 9 1 2 genus 0 654 Shinella 323620 1 no rank 645 0 2643062 1 species Shinella sp. HZN7 645 0 879274 0 455 Liberibacter 34019 1 1 6 genus 1 species 0 190 Candidatus Liberibacter africanus 34020 1 species 0 Liberibacter crescens 94 1273132 1 species 65 Candidatus Liberibacter americanus 0 309868 species 1 556287 0 83 Candidatus Liberibacter solanacearum 1 species 0 Candidatus Liberibacter asiaticus 22 34021 15005 0 227290 32 no rank Agrobacterium 3576 0 357 7 73 1 genus 0 638 2632611 2 no rank 1 species 0 Agrobacterium sp. H13-3 460 861208 species 1 1842536 Agrobacterium sp. RAC06 178 0 species group 2 1183400 0 2072 species 1 358 0 Agrobacterium tumefaciens 1667 1 species 0 405 Agrobacterium fabrum 1176649 373 399 Agrobacterium vitis 0 species 1 1 species Agrobacterium rhizogenes 394 0 359 1525371 0 852 Neorhizobium genus 2 1 2 Neorhizobium galegae 850 0 399 1 species genus 654 1 23 379 0 10577 Rhizobium no rank 17 2613769 4250 0 1 species Rhizobium sp. Y9 455 0 1914541 2028343 305 Rhizobium sp. 10195 0 species 1 species 1 1981173 Rhizobium sp. NXC14 427 0 species 1 1703962 0 Rhizobium sp. N1341 1 1125847 342 Rhizobium sp. NT-26 0 species 1 384 Rhizobium sp. ACO-34A 0 1571470 1 species 1703969 377 Rhizobium sp. N324 0 species 1 0 242 Rhizobium sp. Kim5 2020311 1 species 0 Rhizobium sp. NXC24 284 2048897 1 species species 1 424182 0 386 Rhizobium sp. IRBG74 1 species 1 Rhizobium sp. N741 0 1703967 species 1 1703966 0 Rhizobium sp. N731 132 Rhizobium sp. CIAT894 294 0 2020312 1 species species 1 1703961 132 Rhizobium sp. N1314 0 1 species 197 Rhizobium sp. S41 0 1869170 1 species 0 Rhizobium sp. TAL182 75 2020313 species 1 1301032 0 216 Rhizobium sp. IE4771 species 1 396 946 Rhizobium phaseoli 0 1 species 0 Rhizobium gallicum 660 56730 1 species 0 Rhizobium etli 1097 29449 1 species 2561 Rhizobium leguminosarum 0 384 1 species 409 Rhizobium tropici 0 398 no rank 10 227292 4646 0 28105 0 3701 Sinorhizobium genus 1 32 7 382 Sinorhizobium meliloti 813 0 species 1 species group 1 663276 1061 0 380 0 1061 Sinorhizobium fredii species 1 0 881 2613772 2 no rank 1842534 Sinorhizobium sp. RAC02 584 0 species 1 794846 0 297 Sinorhizobium sp. CCBAU 05631 species 1 species 1 194963 548 Sinorhizobium americanum 0 species 1 110321 Sinorhizobium medicae 366 0 1 6 3 genus 0 945 Ensifer 106591 species 1 106592 0 340 Ensifer adhaerens 599 Ensifer sojae 0 716925 1 species family 21 1 15 119045 0 Methylobacteriaceae 7673 407 Methylobacterium 4246 0 genus 9 1 196 no rank 3 2615210 0 1535 490 Methylobacterium sp. AMS5 0 925818 1 species 426117 0 Methylobacterium sp. 4-46 434 species 1 species 1 1479019 0 Methylobacterium sp. C1 611 species 1 31998 0 Methylobacterium radiotolerans 646 334852 0 403 Methylobacterium oryzae species 1 114616 447 Methylobacterium nodulans 0 species 1 species 1 270351 0 Methylobacterium aquaticum 608 1 species Methylobacterium phyllosphaerae 411 0 418223 0 Microvirga 453 186650 1 3 2 genus 0 Microvirga ossetica 450 1882682 1 species genus 3 2282523 2953 0 408 Methylobacterium extorquens 1623 0 species 1 species 1 29429 0 Methylobacterium zatmanii 360 223967 Methylobacterium populi 970 0 species 1 2 family 0 270 119043 1 7 2 genus 0 270 Parvibaculum 256616 species 1 256618 263 Parvibaculum lavamentivorans 0 family 21 1 18 45401 0 Hyphomicrobiaceae 4921 59282 0 401 Blastochloris genus 1 19 2 1079 0 382 Blastochloris viridis species 1 21 1 2 genus 0 Rhodomicrobium 477 1068 species 1 1069 0 Rhodomicrobium vannielii 456 284 Pelagibacterium 0 1082930 2 4 1 genus 0 Pelagibacterium halotolerans 280 531813 1 species 119044 0 123 genus 1 1 species Candidatus Filomicrobium marinum 123 0 1608628 81 0 1665 Hyphomicrobium genus 4 1 4 1427356 0 Hyphomicrobium nitrativorans 551 species 1 0 650 2619925 1 no rank Hyphomicrobium sp. MC1 650 0 717785 1 species species 1 53399 Hyphomicrobium denitrificans 460 0 0 484 Rhodoplanes 29407 1 43 2 genus no rank 1 2619116 0 441 0 441 Rhodoplanes sp. Z2-YC6860 674703 1 species 1 35 4 genus 0 1466 Devosia 46913 1431 0 196773 3 no rank species 1 2083786 0 Devosia sp. I507 341 1643450 0 Devosia sp. H5989 528 species 1 species 1 1736675 Devosia sp. A16 562 0 772 1971 Bartonellaceae 0 family 18 1 1 Bartonella 1970 0 773 17 1 35 genus 0 Bartonella henselae 163 38323 1 species 0 Bartonella quintana 47 803 1 species 0 Bartonella tribocorum 57 85701 1 species 0 793 2645622 6 no rank 0 Bartonella sp. 1-1C 262 515256 1 species 1933912 Bartonella sp. Raccoon60 102 0 species 1 1 species 0 Bartonella sp. JB15 82 1933906 0 Bartonella sp. WD16.2 166 1933904 1 species species 1 1933910 0 Bartonella sp. A1379B 99 1933907 Bartonella sp. JB63 82 0 species 1 1318743 Bartonella ancashensis 103 0 species 1 species 1 56426 80 Bartonella clarridgeiae 0 774 31 Bartonella bacilliformis 0 species 1 33045 0 112 Bartonella grahamii species 1 1 species 0 38 Bartonella australis 388640 species 1 1686310 0 Bartonella apis 379 species 1 33047 0 Bartonella vinsonii 132 69277 6703 Phyllobacteriaceae 0 family 19 64 1 4083 Mesorhizobium 0 68287 9 52 1 genus 1 species 0 Mesorhizobium sp. B7 267 1670800 2066070 0 518 Mesorhizobium japonicum species 1 1 species 496 Mesorhizobium australicum 0 536018 species 1 71433 Mesorhizobium amorphae 528 0 0 428 325217 1 no rank 278153 Mesorhizobium sp. WSM1497 428 0 species 1 Mesorhizobium opportunistum 510 0 593909 1 species species 1 39645 575 Mesorhizobium ciceri 0 381 0 709 Mesorhizobium loti species 1 0 420 274591 1 genus no rank 1 2614931 420 0 1 species 0 420 Hoeflea sp. IMCC20628 1620421 28100 0 Phyllobacterium 502 genus 6 1 2 species 1 1867719 496 Phyllobacterium zundukense 0 2 1 5 genus Aminobacter 820 0 31988 1 species 815 Aminobacter aminovorans 0 83263 486 Nitratireductor 0 245876 2 35 1 genus 1 species 451 Nitratireductor basaltis 0 472175 449972 328 Chelativorans 0 genus 2 1 1 no rank 1 2643807 327 0 species 1 266779 0 327 Chelativorans sp. BNC1 family 4 1 1 45404 Beijerinckiaceae 573 0 0 328 Methylocella 120652 1 1 2 genus 1 species 0 Methylocella silvestris 327 199596 1 genus 244 0 532 species 1 533 0 244 Beijerinckia indica family 6 1 3 31993 Methylocystaceae 839 0 Methylocystis 414 0 133 3 2 1 genus 0 251 2625913 1 no rank species 1 187303 0 Methylocystis sp. SC2 251 species 1 655015 Methylocystis bryophila 161 0 Methylosinus 422 0 425 2 1 38 genus 0 384 Methylosinus trichosporium 426 1 species 12 1 7 family 0 Xanthobacteraceae 1782 335928 genus 2 1 5 279 697 Xanthobacter 0 1 species Xanthobacter autotrophicus 692 0 280 6 0 734 Azorhizobium genus 4 1 2 7 730 Azorhizobium caulinodans 0 species 1 2 1 2 genus 0 Starkeya 339 152053 337 Starkeya novella 0 921 1 species family 26 88 1 41294 10607 Bradyrhizobiaceae 0 2 1 2 genus 0 Oligotropha 206 40136 204 Oligotropha carboxidovorans 0 40137 1 species genus 4 1 3 911 0 Nitrobacter 475 1 species Nitrobacter hamburgensis 307 0 912 species 1 913 0 164 Nitrobacter winogradskyi Bosea 1704 0 85413 5 1 20 genus no rank 3 2653178 1182 0 1 species Bosea sp. RAC05 349 0 1842539 337 Bosea sp. PAMC 26642 0 1792307 1 species species 1 2015316 496 Bosea sp. AS-1 0 1 species Bosea vaviloviae 502 0 1526658 1073 2732 Rhodopseudomonas 0 genus 2 1 59 2673 Rhodopseudomonas palustris 0 1076 1 species 21 1 2 genus 0 Variibacter 169 1649510 species 1 1333996 0 Variibacter gotjawalensis 148 11 154 1 genus Bradyrhizobium 5233 0 374 1 species Bradyrhizobium japonicum 782 0 375 0 420 Bradyrhizobium oligotrophicum 44255 1 species 1355477 882 Bradyrhizobium diazoefficiens 0 species 1 0 2710 2631580 6 no rank 1 species 0 405 Bradyrhizobium sp. 376 species 1 114615 0 497 Bradyrhizobium sp. ORS 278 species 1 115808 0 459 Bradyrhizobium sp. ORS 285 species 1 288000 0 Bradyrhizobium sp. BTAi1 395 species 1 2057741 576 Bradyrhizobium sp. SK17 0 1223566 Bradyrhizobium sp. CCGE-LA001 378 0 species 1 species 1 1274631 285 Bradyrhizobium icense 0 order 1 2 4 255473 0 144 Parvularculales 0 Parvularculaceae 142 255474 1 16 3 family 2 1 7 genus 126 Parvularcula 0 208215 species 1 208216 Parvularcula bermudensis 119 0 no rank 7 82117 1183 0 1632780 Phreatobacter 464 0 genus 2 22 1 1 species 0 Phreatobacter sp. S-12 442 1868589 66 0 62654 2 clade genus 2 4 1 767891 Candidatus Puniceispirillum 66 0 767892 62 Candidatus Puniceispirillum marinum 0 species 1 991903 313 Polymorphum 0 genus 2 8 1 991904 305 Polymorphum gilvum 0 species 1 1 genus 340 0 213485 349221 0 340 Micavibrio aeruginosavorus species 1 80 202 1 order Sphingomonadales 23214 0 204457 335929 Erythrobacteraceae 4660 0 family 22 85 1 2 genus 0 425 2800686 Altererythrobacter dongtanensis 145 0 692370 1 species 0 280 Altererythrobacter mangrovi 1982042 1 species 2 genus 484 0 1855416 1 species Erythrobacter flavus 124 0 192812 266951 360 Erythrobacter seohaensis 0 species 1 genus 2 2800681 392 0 species 1 502682 Erythrobacter gangjinensis 242 0 1 species 150 Erythrobacter atlanticus 0 1648404 0 688 Croceicoccus 1295327 5 1 3 genus 1348774 0 Croceicoccus naphthovorans 284 species 1 0 399 Croceicoccus marinus 450378 1 species 2800682 0 241 genus 1 645517 241 Altererythrobacter namhicola 0 species 1 0 1233 2800788 6 no rank genus 3 24 1 1111 Porphyrobacter 412 0 2 no rank 388 0 2683265 1 species 0 191 Porphyrobacter HT-58-2 2023229 1896196 0 197 Porphyrobacter sp. LM 6 species 1 1041 821 Erythrobacter 0 genus 3 13 1 Porphyrobacter neustonensis 335 0 1112 1 species species 1 39960 473 Erythrobacter litoralis 0 4 9 1 genus Altererythrobacter 853 0 361177 0 Altererythrobacter epoxidivorans 326 361183 1 species 1 species 0 Altererythrobacter atlanticus 429 1267766 1 species 0 89 Altererythrobacter ishigakiensis 476157 259 0 2800685 1 genus species 1 543877 0 259 Altererythrobacter marensis 41297 0 18352 Sphingomonadaceae family 170 1 57 1434046 0 Sphingorhabdus 739 genus 7 1 3 2614947 0 732 no rank 2 0 360 Sphingorhabdus sp. M41 1806885 1 species 1 species 0 Sphingorhabdus sp. YGSMI21 372 2077182 Citromicrobium 295 0 72173 2 10 1 genus 285 0 2630544 1 no rank 1634516 Citromicrobium sp. JL477 285 0 species 1 0 Sphingomonas 5613 13687 1 133 15 genus 1 species 363 Sphingomonas panacis 0 1560345 species 1 152682 432 Sphingomonas melonis 0 1 species 0 Sphingomonas koreensis 302 93064 species 1 1609977 0 Sphingomonas hengshuiensis 346 321 Sphingomonas taxi 0 1549858 1 species no rank 6 196159 2461 0 1 species 0 Sphingomonas sp. KC8 590 1030157 0 Sphingomonas sp. NIC1 429 1961362 1 species species 1 1327635 0 Sphingomonas sp. Cra20 349 Sphingomonas sp. LK11 450 0 1390395 1 species 1 species 449 Sphingomonas sp. MM-1 0 745310 194 Sphingomonas sp. LM7 0 1938607 1 species 0 468 Sphingomonas sanxanigenens 397260 1 species 160791 Sphingomonas wittichii 787 0 species 2 343 1 strain 1 1283312 0 444 Sphingomonas sp. DC-6 10 80 1 genus Sphingopyxis 2588 0 165697 33052 271 Sphingopyxis terrae 0 species 1 1 species 0 Sphingopyxis granuli 393 267128 338 Sphingopyxis alaskensis 0 117207 1 species 33050 0 468 Sphingopyxis macrogoltabida species 1 species 1 1515612 197 Sphingopyxis fribergensis 0 2614943 841 0 no rank 4 species 1 1357916 Sphingopyxis sp. QXT-31 252 0 species 1 292913 Sphingopyxis sp. 113P3 228 0 species 1 1913578 Sphingopyxis sp. LPB0140 47 0 Sphingopyxis sp. MG 314 0 1866325 1 species 165696 Novosphingobium 1412 0 genus 5 1 13 species 1 48935 0 Novosphingobium aromaticivorans 331 1 species 0 Novosphingobium resinovorum 318 158500 205844 Novosphingobium pentaromativorans 486 0 species 1 2644732 0 264 no rank 1 species 1 702113 Novosphingobium sp. PP1Y 264 0 135 1 15 genus 0 Sphingobium 5562 165695 0 2094 2611147 6 no rank 1 species Sphingobium sp. EP60837 213 0 1855519 1315974 366 Sphingobium sp. TKS 0 species 1 627192 0 Sphingobium sp. SYK-6 320 species 1 species 1 407020 Sphingobium sp. MI1205 304 0 1843368 0 Sphingobium sp. RAC03 348 species 1 484429 Sphingobium sp. YBL2 543 0 species 1 1 species 469 Sphingobium chlorophenolicum 0 46429 0 368 Sphingobium cloacae 120107 1 species species 1 332055 0 Sphingobium indicum 364 1332080 0 Sphingobium baderi 410 species 1 13690 0 Sphingobium yanoikuyae 337 species 1 1 species 0 Sphingobium hydrophobicum 563 1673076 species 1 332056 0 459 Sphingobium japonicum 76947 Sphingobium herbicidovorans 363 0 species 1 2 1 3 genus Zymomonas 588 0 541 species 1 542 0 Zymomonas mobilis 585 genus 1 2685927 398 0 species 1 1921510 0 Sphingomonas sp. JJ-A5 398 genus 1 150203 0 334 1 no rank 0 334 2626550 0 334 Blastomonas sp. RAC04 1842535 1 species 406 0 1649486 1 genus 1850238 0 Rhizorhabdus dicambivorans 406 species 1 genus 1 2709685 0 247 0 Sphingorhabdus flavimaris 247 266812 1 species 20 1 30 order Caulobacterales 6252 0 204458 76892 Caulobacteraceae 6222 0 family 19 1 87 20 0 Phenylobacterium 603 genus 1 34 2 284016 0 569 Phenylobacterium zucineum species 1 1 no rank 101 0 81440 0 Caulobacteraceae bacterium OTSz_A_272 101 1759059 1 species 41275 0 Brevundimonas 2078 genus 1 39 7 41276 347 Brevundimonas vesicularis 0 species 1 3 no rank 0 1027 2622653 254 Brevundimonas sp. DS20 0 1532555 1 species 1 species 0 Brevundimonas sp. LM2 360 1938605 413 Brevundimonas sp. GW460-12-10-14-LB2 0 1827469 1 species 0 Brevundimonas subvibrioides 373 74313 1 species species 1 588932 Brevundimonas naejangsanensis 292 0 367 Asticcacaulis 0 76890 2 1 28 genus species 1 78587 0 Asticcacaulis excentricus 339 75 2986 Caulobacter 0 genus 6 1 48 1 species 0 Caulobacter vibrioides 793 155892 1 no rank 0 735 2648921 366602 Caulobacter sp. K31 735 0 species 1 326 Caulobacter segnis 0 88688 1 species 69666 0 488 Caulobacter mirabilis species 1 1 species 0 596 Caulobacter henricii 69395 28216 0 135498 Betaproteobacteria class 254 1 341 0 544 33809 2 no rank Betaproteobacteria bacterium GR16-43 380 0 1904640 1 species beta proteobacterium CB 164 0 543913 1 species 0 12208 Neisseriales 206351 111 1 35 order 1 64 21 family 0 6781 Neisseriaceae 481 genus 2 1 1 538 648 Eikenella 0 647 Eikenella corrodens 0 539 1 species genus 1 71 0 137 1 species Simonsiella muelleri 137 0 72 1 74 12 genus 0 4951 Neisseria 482 495 Neisseria elongata 368 0 species 1 species 1 1853278 459 Neisseria sp. 10023 0 488 Neisseria mucosa 361 0 species 1 1 species Neisseria sicca 392 0 490 no rank 2 2623750 0 800 655307 0 669 Neisseria sp. KEM232 species 1 1 species 131 Neisseria sp. 10022 0 1853276 326523 0 371 Neisseria zoodegmatis species 1 1 species 0 Neisseria lactamica 588 486 0 828 Neisseria meningitidis 487 1 species 485 0 Neisseria gonorrhoeae 345 species 1 species 1 28091 Neisseria weaveri 365 0 0 149 421605 1 no rank 2052837 149 Neisseriaceae bacterium DSM 100970 0 species 1 59 Vitreoscilla 601 0 genus 3 1 1 no rank 1 2627922 74 0 0 Vitreoscilla sp. C1 74 96942 1 species 1 species 0 Vitreoscilla filiformis 526 63 genus 1 1193515 0 231 1 species 0 Snodgrassella alvi 231 1196083 1499392 0 5316 Chromobacteriaceae family 48 1 13 2 1 2 genus 849 Pseudogulbenkiania 0 568394 0 847 2642558 1 no rank 847 Pseudogulbenkiania sp. NH8B 0 748280 1 species 2 7 1 genus 405 Jeongeupia 0 885864 2619593 0 398 no rank 1 species 1 1906741 398 Jeongeupia sp. USM3 0 Laribacter 812 0 168470 2 1 5 genus species 1 168471 0 807 Laribacter hongkongensis no rank 4 90153 2536 0 4 38 1 genus 2536 Chromobacterium 0 535 1 species 755 Chromobacterium violaceum 0 536 0 1021 Chromobacterium vaccinii 1108595 1 species 722 0 2641838 1 no rank 1 species 722 Chromobacterium sp. ATCC 53434 0 2059672 1 1 2 genus 0 Aquaspirillum 666 187 0 665 2620219 1 no rank 665 Aquaspirillum sp. LM1 0 1938604 1 species 0 6941 Rhodocyclales 206389 1 93 22 order 75787 0 1911 Rhodocyclaceae family 1 77 6 1011 Azospira 0 146937 2 1 31 genus species 1 146939 980 Azospira oryzae 0 1 no rank 428 0 75788 species 1 1898103 Rhodocyclaceae bacterium 428 0 genus 2 1 8 551759 395 Aromatoleum 0 species 1 551760 0 Aromatoleum aromaticum 387 2008794 0 Zoogloeaceae 4508 family 104 1 12 33057 0 Thauera 2816 genus 1 45 6 59405 Thauera aromatica 591 0 species 1 2 no rank 0 1217 2609274 species 1 85643 0 Thauera sp. MZ1T 669 species 1 2005884 0 548 Thauera sp. K11 0 Thauera chlorobenzoica 436 96773 1 species species 1 1134435 Thauera humireducens 527 0 genus 1 54 5 12960 0 Azoarcus 1588 0 983 2629479 2 no rank 1 species Azoarcus sp. CIB 489 0 198107 0 494 Azoarcus sp. KH32C 748247 1 species 418699 0 Azoarcus olearius 345 species 1 0 206 Azoarcus sp. SY39 2067960 1 species 429 Azonexaceae 0 2008795 3 2 1 family Dechloromonas 427 0 73029 2 5 1 genus 259537 422 Dechloromonas aromatica 0 species 1 no rank 11 119066 747 0 189384 7 0 genus 1 189385 Candidatus Tremblaya princeps 7 0 species 1 50 1 2 genus 0 Candidatus Accumulibacter 426 327159 1 species Candidatus Accumulibacter phosphatis 376 0 327160 genus 1 1301080 68 0 species 1 1160784 68 Candidatus Nasuia deltocephalinicola 0 genus 1 1381133 0 21 1 species 21 Candidatus Profftella armatura 0 669502 genus 1 3 6 33055 0 Kinetoplastibacterium 225 994695 0 Candidatus Kinetoplastibacterium galatii 16 species 1 994692 43 Candidatus Kinetoplastibacterium desouzaii 0 species 1 33056 110 Candidatus Kinetoplastibacterium crithidii 0 species 1 1 species 0 25 Candidatus Kinetoplastibacterium oncopeltii 994696 species 1 233181 0 Kinetoplastibacterium blastocrithidii 28 Nitrosomonadales 5794 0 32003 40 33 1 order 32011 Methylophilaceae 1283 0 family 12 1 1 0 Methylotenera 190 359407 1 2 3 genus 0 Methylotenera versatilis 98 1055487 1 species 1 species 0 90 Methylotenera mobilis 359408 3 1 1 genus Methylovorus 371 0 81682 2634027 175 0 no rank 1 species 1 887061 175 Methylovorus sp. MP688 0 266009 0 Methylovorus glucosotrophus 195 species 1 2 genus 317 0 1679002 208 Candidatus Methylopumilus planktonicus 0 1581557 1 species 1 species 0 109 Candidatus Methylopumilus turicensis 1581680 16 0 157 genus 1 no rank 1 2630143 0 157 species 1 1662285 0 157 Methylophilus sp. TWE2 genus 1 4 2 404 0 247 Methylobacillus species 1 405 243 Methylobacillus flagellatus 0 family 3 2772226 677 0 8 1 2 genus 0 315 Sulfuricella 935200 species 1 649841 0 Sulfuricella denitrificans 307 0 362 1778653 1 genus no rank 1 2637784 0 362 1985873 362 Sulfuriferula sp. AH1 0 species 1 2008790 Thiobacillaceae 185 0 family 3 4 1 genus 2 1 1 919 Thiobacillus 181 0 1 species 0 180 Thiobacillus denitrificans 36861 family 11 20 1 206379 Nitrosomonadaceae 1899 0 1149 0 914 6 genus 385 0 2609265 2 no rank 1 species 0 Nitrosomonas sp. Is79A3 190 261292 0 195 Nitrosomonas sp. AL212 153948 1 species 1 species Nitrosomonas communis 140 0 44574 915 0 Nitrosomonas europaea 250 species 1 species 1 44577 206 Nitrosomonas ureae 0 species 1 916 168 Nitrosomonas eutropha 0 35798 0 Nitrosospira 730 genus 1 6 4 187 Nitrosospira lacus 0 1288494 1 species 1231 0 Nitrosospira multiformis 320 species 1 35799 217 Nitrosospira briensis 0 species 1 family 1 13 5 90627 0 Gallionellaceae 650 Sideroxydans 370 0 314343 2 7 1 genus 1 species Sideroxydans lithotrophicus 363 0 63745 genus 5 1 2 96 0 Gallionella 267 1 species 0 Gallionella capsiferriformans 262 370405 2008793 0 Sterolibacteriaceae 1067 family 1 26 5 1054211 0 603 Sulfuritalea genus 11 1 2 1 species 0 Sulfuritalea hydrogenivorans 592 748811 genus 2 1 4 378210 438 Methyloversatilis 0 0 434 2639971 1 no rank 1 species 434 Methyloversatilis sp. RAC08 0 1842540 230 1218 1 order Burkholderiales 109010 0 80840 0 833 80841 2 no rank species 1 1469502 Burkholderiales bacterium GJ-E10 265 0 1834205 0 568 Burkholderiales bacterium YL45 species 1 Oxalobacteraceae 14709 0 75682 28 1 77 family 3262 Herbaspirillum 0 963 6 1 61 genus 0 343 2624150 1 no rank 0 343 Herbaspirillum sp. meg3 2025949 1 species 80842 582 Herbaspirillum rubrisubalbicans 0 species 1 1 species 0 767 Herbaspirillum frisingense 92645 species 1 341045 0 Herbaspirillum hiltneri 498 species 1 964 0 1011 Herbaspirillum seropedicae 846 0 439 genus 1 0 439 Oxalobacter formigenes 847 1 species 1 4 4 genus 0 2457 Collimonas 202907 species 1 279113 Collimonas pratensis 946 0 0 865 Collimonas arenae 279058 1 species species 1 158899 0 642 Collimonas fungivorans 303379 0 395 Herminiimonas genus 10 1 3 204773 190 Herminiimonas arsenicoxydans 0 species 1 species 1 1809410 0 195 Herminiimonas arsenitoxidans genus 1 48 7 29580 0 4645 Janthinobacterium no rank 4 2610881 2357 0 species 1 1938606 0 656 Janthinobacterium sp. LM6 Janthinobacterium sp. B9-8 301 0 1236179 1 species species 1 375286 0 336 Janthinobacterium sp. Marseille Janthinobacterium sp. 1_2014MBL_MicDiv 1064 0 1644131 1 species 0 1492 Janthinobacterium agaricidamnosum 55508 1 species 1 species 0 748 Janthinobacterium svalbardensis 368607 genus 67 1 6 149698 0 Massilia 3434 1141883 0 555 Massilia putida species 1 728 Massilia sp. ZMN-3 0 2072590 1 species 2609279 1326 0 no rank 2 species 1 1707785 0 397 Massilia sp. WG5 1678028 0 Massilia sp. NR 4-1 929 species 1 species 1 2045208 0 Massilia sp. B2 758 no rank 17 224471 0 6146 Roseateles 728 0 93681 2 3 1 genus species 1 76731 0 Roseateles depolymerans 725 0 Methylibium 465 316612 9 1 2 genus species 1 105560 456 Methylibium petroleiphilum 0 Leptothrix 818 0 88 2 1 26 genus Leptothrix cholodnii 792 0 34029 1 species 1 species 0 [Polyangium] brachysporum 550 413882 0 877 Rubrivivax 28067 6 1 2 genus 28068 0 871 Rubrivivax gelatinosus species 1 Thiomonas 528 0 32012 2 1 6 genus species 1 926 0 Thiomonas intermedia 522 2 1 37 genus Mitsuaria 613 0 65047 2648776 576 0 no rank 1 1658665 0 576 Mitsuaria sp. 7 species 1 212743 Rhizobacter 634 0 genus 2 24 1 610 Rhizobacter gummiphilus 0 946333 1 species 2 1 4 genus Paucibacter 933 0 318147 929 0 2642959 1 no rank Paucibacter sp. KCTC 42545 929 0 1768242 1 species 1 176 84 family 0 38130 Burkholderiaceae 119060 0 293 Polynucleobacter 44013 1 7 4 genus 1835254 121 Polynucleobacter duraquae 0 species 1 576610 Polynucleobacter necessarius 91 0 species 1 species 1 576611 74 Polynucleobacter asymbioticus 0 genus 1 1827195 0 409 species 1 758793 409 Burkholderia sp. RPE64 0 2571159 0 165 genus 1 165 Paraburkholderia rhizoxinica 0 412963 1 species genus 9 232 1 106589 Cupriavidus 6526 0 no rank 2 2640874 2143 0 species 1 876364 0 997 Cupriavidus sp. USMAA2-4 1 species Cupriavidus sp. USMAHM13 1146 0 1389192 106590 0 1152 Cupriavidus necator species 1 species 1 82541 0 Cupriavidus gilardii 549 68895 Cupriavidus basilensis 612 0 species 1 1 species 744 Cupriavidus sp. USMAA1020 0 367825 119219 0 681 Cupriavidus metallidurans species 1 413 Cupriavidus pinatubonensis 0 248026 1 species 93217 Pandoraea 3391 0 genus 10 96 1 1 species Pandoraea thiooxydans 322 0 445709 93219 Pandoraea norimbergensis 485 0 species 1 0 Pandoraea pnomenusa 369 93220 1 species 93221 282 Pandoraea pulmonicola 0 species 1 species 1 656178 0 303 Pandoraea vervacti species 1 656179 0 Pandoraea faecigallinarum 265 93218 0 Pandoraea apista 386 species 1 Pandoraea oxalativorans 515 0 573737 1 species 0 Pandoraea sputorum 368 93222 1 species 48736 Ralstonia 4393 0 genus 5 39 1 species 1 329 0 Ralstonia pickettii 1112 species 1 305 0 2067 Ralstonia solanacearum 1 species Ralstonia insidiosa 568 0 190721 species 1 105219 0 607 Ralstonia mannitolilytica Burkholderia 17298 0 32008 41 601 1 genus Burkholderia gladioli 879 0 28095 1 species 0 3143 2613784 11 no rank 1 species Burkholderia sp. CCGE1001 228 0 640510 1740162 0 175 Burkholderia sp. Bp5365 species 1 species 1 640512 340 Burkholderia sp. CCGE1003 0 1740163 Burkholderia sp. Bp7605 373 0 species 1 species 1 1097668 372 Burkholderia sp. YI23 0 0 Burkholderia sp. RPE67 390 758796 1 species 0 202 Burkholderia sp. 2002721687 1468409 1 species 1795043 0 Burkholderia sp. PAMC 26561 230 species 1 species 1 416344 0 254 Burkholderia sp. KJ006 1 species Burkholderia sp. PAMC 28687 304 0 1795874 1678678 Burkholderia sp. HB1 275 0 species 1 0 2294 111527 7 species group 269 Burkholderia sp. MSMB0266 0 1637837 1 species species 1 13373 0 Burkholderia mallei 225 species 1 28450 0 Burkholderia pseudomallei 604 0 Burkholderia sp. MSMB0852 319 1637841 1 species 166 Burkholderia sp. MSMB617WGS 0 1637831 1 species species 1 342113 0 Burkholderia oklahomensis 285 0 426 Burkholderia thailandensis 57975 1 species species 1 41899 0 Burkholderia plantarii 548 87882 0 8909 species group 19 152480 0 270 Burkholderia ambifaria species 1 1516 Burkholderia cenocepacia 0 95486 1 species 1 species 413 Burkholderia vietnamiensis 0 60552 1 species Burkholderia latens 383 0 488446 292 Burkholderia cepacia 1634 0 species 1 species 1 488731 0 Burkholderia seminalis 233 species 1 488729 223 Burkholderia metallica 0 0 [Pseudomonas] mesoacidophila 177 265293 1 species 87883 Burkholderia multivorans 548 0 species 1 1 species Burkholderia dolosa 252 0 152500 60550 245 Burkholderia pyrrocinia 0 species 1 110 Burkholderia territorii 0 1503055 1 species 1 species 0 284 Burkholderia pseudomultivorans 1207504 1 species 0 353 Burkholderia stabilis 95485 0 Burkholderia ubonensis 969 101571 1 species 1 species Burkholderia contaminans 332 0 488447 species 1 1503054 359 Burkholderia stagnalis 0 species 1 488732 0 Burkholderia diffusa 102 species 1 482957 506 Burkholderia lata 0 1 species 924 Burkholderia glumae 0 337 1822464 5479 Paraburkholderia 0 genus 12 86 1 1 species 802 Paraburkholderia caribensis 0 75105 1 species 649 Paraburkholderia sprentiae 0 948107 500 Paraburkholderia phymatum 0 148447 1 species 1 species 0 Paraburkholderia phenoliruptrix 270 252970 0 481 Paraburkholderia xenovorans 36873 1 species 134537 0 Paraburkholderia fungorum 629 species 1 1 species 0 359 Paraburkholderia terrae 311230 no rank 1 2615204 0 423 species 1 1926494 0 423 Paraburkholderia sp. SOS3 species 1 2026199 0 422 Paraburkholderia aromaticivorans 1 species 424 Paraburkholderia phytofirmans 0 261302 species 1 169430 434 Paraburkholderia hospita 0 25658 Comamonadaceae 0 80864 57 366 1 family genus 1 3 3 52972 0 872 Polaromonas no rank 1 2638319 300 0 species 1 296591 300 Polaromonas sp. JS666 0 216465 Polaromonas naphthalenivorans 569 0 species 1 Diaphorobacter 435 0 238749 2 1 5 genus 0 430 Diaphorobacter polyhydroxybutyrativorans 1546149 1 species 0 602 364316 1 genus Verminephrobacter eiseniae 602 0 364317 1 species genus 1 1436289 189 0 0 189 Candidatus Symbiobacter mobilis 1436290 1 species 1 140 9 genus 0 4939 Acidovorax 12916 Acidovorax avenae 665 0 80867 1 species 1 species 0 Acidovorax citrulli 452 80869 species 1 553814 0 632 Acidovorax sp. NA3 4 no rank 2374 0 2684926 1858609 0 Acidovorax sp. T1 377 species 1 1842533 0 792 Acidovorax sp. RAC01 species 1 664 Acidovorax sp. KKS102 0 358220 1 species 541 Acidovorax sp. JS42 0 232721 1 species 1 species 0 676 Acidovorax ebreus 721785 34072 0 Variovorax 3328 genus 48 1 5 34073 1301 Variovorax paradoxus 0 species 1 no rank 2 663243 0 1125 species 1 2126319 0 900 Variovorax sp. PMC12 species 1 1795631 0 Variovorax sp. PAMC 28711 225 0 Variovorax boronicumulans 854 436515 1 species 5 1 53 genus Delftia 2829 0 80865 1448 0 2613839 2 no rank 0 677 Delftia sp. HK171 1920191 1 species 1 species 0 771 Delftia sp. Cs1-4 742013 589 Delftia tsuruhatensis 0 180282 1 species 80866 739 Delftia acidovorans 0 species 1 3 3 1 genus Limnohabitans 303 0 665874 2 no rank 300 0 2626134 1678129 Limnohabitans sp. 103DPR2 124 0 species 1 species 1 1678128 0 Limnohabitans sp. 63ED37-2 176 0 Ottowia 968 219181 6 1 3 genus 0 486 Ottowia sp. KADR8-3 2109914 1 species 2645081 476 0 no rank 1 species 1 1658672 Ottowia sp. oral taxon 894 476 0 genus 1 1 2 201096 0 Alicycliphilus 563 0 Alicycliphilus denitrificans 562 179636 1 species 4 1 2 genus 0 547 Simplicispira 352450 2109915 0 Simplicispira sp. SC1-8 543 species 1 13 1 2 genus 0 Ramlibacter 1086 174951 species 1 94132 Ramlibacter tataouinensis 1073 0 1649468 Melaminivora 528 0 genus 2 5 1 523 0 2641902 1 no rank 2109913 523 Melaminivora sp. SC2-9 0 species 1 28065 0 2794 Rhodoferax genus 9 1 5 Rhodoferax ferrireducens 448 0 192843 1 species 1 species Rhodoferax antarcticus 1048 0 81479 1484693 Rhodoferax saidenbachensis 585 0 species 1 0 704 Rhodoferax koreense 1842727 1 species 47420 Hydrogenophaga 1516 0 genus 4 1 58 2 no rank 0 1086 2610897 species 1 1842537 503 Hydrogenophaga sp. RAC07 0 795665 Hydrogenophaga sp. PBC 583 0 species 1 0 372 Hydrogenophaga crassostreae 1763535 1 species genus 4 10 1 283 2551 Comamonas 0 1 species 0 Comamonas testosteroni 1221 285 1 species 0 602 Comamonas serinivorans 1082851 0 718 Comamonas kerstersii 225992 1 species 686 0 2678886 1 genus Melaminivora sp. SC2-7 686 0 2116657 1 species 2490452 556 0 genus 2 1 species 0 Comamonadaceae bacterium B1 307 1458426 249 Comamonadaceae bacterium A1 0 1458425 1 species 41 163 1 family Alcaligenaceae 22316 0 506 517 0 10379 Bordetella genus 1 240 17 1 species Bordetella parapertussis 715 0 519 123899 0 Bordetella trematum 546 species 1 no rank 1 2630031 0 496 1697043 0 496 Bordetella sp. H567 species 1 species 1 1331258 642 Bordetella pseudohinzii 0 463025 0 Bordetella bronchialis 894 species 1 0 729 Bordetella genomosp. 6 463024 1 species 1 species Bordetella bronchiseptica 1359 0 518 species 1 35814 Bordetella holmesii 319 0 Bordetella genomosp. 8 627 0 1416806 1 species 682 Bordetella hinzii 0 103855 1 species 1 species 459 Bordetella flabilis 0 463014 1 species 0 Bordetella petrii 560 94624 1 species Bordetella genomosp. 13 588 0 463040 1 species 0 354 Bordetella avium 521 526 Bordetella genomosp. 9 0 1416803 1 species species 1 520 0 Bordetella pertussis 643 1 genus 150 0 1100891 643674 Paenalcaligenes hominis 150 0 species 1 genus 2 290425 0 945 species 1 310575 0 469 Advenella kashmirensis species 1 302406 0 Advenella mimigardefordensis 476 genus 2 29574 256 0 species 1 84590 0 Taylorella asinigenitalis 181 Taylorella equigenitalis 75 0 29575 1 species 2 11 1 genus 278 Pusillimonas 0 305976 267 0 2640016 1 no rank 0 Pusillimonas sp. T7-7 267 1007105 1 species 15 1 2 genus 0 Orrella 720 1921582 0 705 Orrella dioscoreae 1851544 1 species 205 Oligella 0 90243 2 1 1 genus 90245 Oligella urethralis 204 0 species 1 6 1 282 genus 7456 Achromobacter 0 222 0 Achromobacter denitrificans 1706 32002 1 species 217204 0 532 Achromobacter insolitus species 1 2765 Achromobacter xylosoxidans 0 85698 1 species 634 0 2626865 1 no rank 0 634 Achromobacter sp. AONIH1 1758194 1 species species 1 217203 0 Achromobacter spanius 1537 genus 2 1 1 1472344 Basilea 168 0 1472345 0 167 Basilea psittacipulmonis species 1 2 3 1 genus 945 Alcaligenes 0 507 1 species Alcaligenes faecalis 942 0 511 Castellaniella 651 0 359336 2 21 1 genus species 1 75697 0 630 Castellaniella defragrans 1553900 0 1581 Oligoflexia class 4 1 8 213481 0 Bdellovibrionales 1190 order 9 1 5 213483 1181 Bdellovibrionaceae 0 family 4 6 1 genus 3 1 2 958 1175 Bdellovibrio 0 453816 0 68 Bdellovibrio exovorus species 1 species 1 959 0 Bdellovibrio bacteriovorus 1105 order 2 2024979 387 0 family 1 263369 243 0 0 243 146784 1 genus 1 species 0 243 Bacteriovorax stolpii 960 family 1 1652132 144 0 1 genus 144 0 1652133 species 1 97084 0 Halobacteriovorax marinus 144 0 459 580370 4 class order 1 1 4 580371 0 459 Mariprofundales family 3 1 1 580372 458 Mariprofundaceae 0 377315 0 457 genus 2 0 Mariprofundus ferrinatatus 244 1921087 1 species 1921086 0 213 Mariprofundus aestuarium species 1 class 6 1807140 910 0 order 6 4 1 225057 910 Acidithiobacillales 0 family 5 1 5 225058 0 Acidithiobacillaceae 906 genus 1 2 4 119977 0 901 Acidithiobacillus species 1 160808 396 Acidithiobacillus ferrivorans 0 1 species 261 Acidithiobacillus caldus 0 33059 1 species Acidithiobacillus ferrooxidans 242 0 920 3574978 0 1783272 1630 clade 544448 0 9475 phylum 99 713063 0 712 no rank 2 1 species 0 300 Tenericutes bacterium MZ-XQ 1911683 Tenericutes bacterium MO-XQ 412 0 1911684 1 species 25 1 95 class 0 8424 Mollicutes 31969 0 3665 Mycoplasmatales 2085 2 1 43 order 2092 0 3663 Mycoplasmataceae family 1 7 42 genus 2 2129 146 0 Ureaplasma urealyticum 76 0 2130 1 species 70 Ureaplasma parvum 0 134821 1 species genus 1 19 27 2093 0 Mycoplasma 2218 28227 72 Mycoplasma penetrans 0 species 1 0 Mycoplasma yeatsii 156 51365 1 species 0 Mycoplasma flocculare 49 2128 1 species 1 species 87 Mycoplasma hyorhinis 0 2100 57 Mycoplasma arthritidis 0 2111 1 species 0 Mycoplasma hominis 106 2098 1 species Mycoplasma putrefaciens 238 0 2123 1 species 1 species 93 Mycoplasma crocodyli 0 50052 0 Mycoplasma wenyonii 17 65123 1 species 2683645 62 0 no rank 1 1749074 0 Mycoplasma sp. (ex Biomphalaria glabrata) 62 species 1 29501 79 Mycoplasma haemofelis 0 species 1 Mycoplasma hyopneumoniae 51 0 2099 1 species 1 species 0 49 Mycoplasma haemocanis 136241 21 Mycoplasma ovis 0 171632 1 species species 1 2118 0 42 Mycoplasma mobile 1 species 141 Mycoplasma genitalium 0 2097 0 Mycoplasma pneumoniae 105 2104 1 species species 1 45362 33 Mycoplasma bovoculi 0 3 species group 0 480 656088 species 1 2102 Mycoplasma mycoides 246 0 2095 Mycoplasma capricolum 117 0 species 1 2105 0 Mycoplasma leachii 117 species 1 0 87 Mycoplasma canadense 29554 1 species 86660 0 48 Mycoplasma dispar species 1 species 1 984991 0 Mycoplasma parvum 14 species 1 2096 52 Mycoplasma gallisepticum 0 1 species Mycoplasma suis 60 0 57372 2767358 0 1292 genus 12 29555 0 132 Mycoplasma canis species 1 species 1 2107 0 50 Mycoplasma pulmonis 48003 0 Mycoplasma pullorum 86 species 1 0 102 Mycoplasma agalactiae 2110 1 species species 1 2094 Mycoplasma arginini 126 0 1 species 0 445 Mycoplasma bovis 28903 species 1 2115 0 Mycoplasma fermentans 103 species 1 2113 34 Mycoplasma californicum 0 1 species 0 35 Mycoplasma bovirhinis 29553 Mycoplasma cynos 76 0 171284 1 species 2109 0 Mycoplasma synoviae 61 species 1 species 1 2112 Mycoplasma bovigenitalium 42 0 38 27 1 order Entomoplasmatales 3609 0 186328 0 Spiroplasmataceae 2460 2131 3 1 24 family 23 20 1 genus Spiroplasma 2457 0 2132 1 species 0 Spiroplasma floricola 172 216937 87 Spiroplasma chrysopicola 0 216933 1 species 1 species 0 Spiroplasma syrphidicola 92 216945 1 species 0 177 Spiroplasma turonicum 216946 species 1 216935 Spiroplasma culicicola 132 0 0 85 Spiroplasma apis 2137 1 species 1114980 0 124 Spiroplasma atrichopogonis species 1 1 species Spiroplasma citri 181 0 2133 315358 0 Spiroplasma eriocheiris 187 species 1 Spiroplasma corruscae 81 0 216934 1 species 1 species 0 124 Spiroplasma mirum 2144 142 0 2637901 2 no rank 1 species 71 Spiroplasma sp. TU-14 0 1898044 1914410 0 71 Spiroplasma sp. NBRC 100390 species 1 1 species 0 47 Spiroplasma monobiae 2136 1 species Spiroplasma taiwanense 103 0 2145 species 1 216936 49 Spiroplasma diminutum 0 species 1 2139 0 70 Spiroplasma clarkii 1 species 0 Spiroplasma sabaudiense 51 216944 0 Spiroplasma litorale 149 216942 1 species 1 species 0 Spiroplasma kunkelii 116 47834 362837 146 Spiroplasma cantharicola 0 species 1 species 1 216938 122 Spiroplasma helicoides 0 1122 0 33925 13 family Entomoplasma 237 0 46238 5 1 1 genus 0 37 Entomoplasma freundtii 74700 1 species 1 species 0 Entomoplasma luminosum 69 214888 0 49 Entomoplasma melaleucae 81459 1 species 1 species Entomoplasma somnilux 81 0 215578 Mesoplasma 885 0 46239 8 15 1 genus 0 Mesoplasma coleopterae 232 324078 1 species 1 species Mesoplasma florum 234 0 2151 Mesoplasma syrphidae 146 0 225999 1 species Mesoplasma tabanidae 42 0 219745 1 species 1 species 0 51 Mesoplasma entomophilum 2149 0 63 Mesoplasma chauliocola 216427 1 species species 1 138853 0 102 Mesoplasma lactucae 1125 Acholeplasmatales 0 186329 13 2 1 order family 3 1 12 2146 0 Acholeplasmataceae 1123 genus 6 5 1 33926 218 Candidatus Phytoplasma 0 species group 3 85620 110 0 1 species 0 27 Maize bushy stunt phytoplasma 202462 species 1 229545 44 Aster yellows witches'-broom phytoplasma 0 100379 0 39 Onion yellows phytoplasma species 1 85630 39 0 species group 1 Candidatus Phytoplasma mali 39 0 37692 1 species 1 species group 0 64 85632 59748 64 Candidatus Phytoplasma australiense 0 species 1 0 Acholeplasma 902 2147 1 11 5 genus 1 species 244 Acholeplasma palmae 0 38986 species 1 35623 0 Acholeplasma oculi 302 1 species 0 134 Acholeplasma laidlawii 2148 61635 Acholeplasma brassicae 211 0 species 1 no rank 2 2799557 0 339 0 Candidatus Izimaplasma 339 1912503 1 1 2 genus 2624196 338 0 no rank 1 0 Candidatus Izimaplasma sp. HR1 338 1541959 1 species 201174 Actinobacteria 690717 0 phylum 616 9 1 class 4 84992 0 344 order 2 1 4 84993 0 344 Acidimicrobiales family 1 84994 100 0 0 100 53634 1 genus 1 species 100 Acidimicrobium ferrooxidans 0 53635 2 family 0 242 2448023 682522 242 Ilumatobacter 0 genus 2 5 1 1 species 0 237 Ilumatobacter coccineus 467094 0 574 Thermoleophilia 1497346 2 1 5 class order 4 56 1 588673 Solirubrobacterales 572 0 family 3 7 1 320583 Conexibacteraceae 516 0 2 28 1 genus 509 Conexibacter 0 191494 1 species 0 481 Conexibacter woesei 191495 0 228 1752188 4 no rank species 1 1848255 121 Actinobacteria bacterium IMCC25003 0 species 1 1848755 0 Actinobacteria bacterium IMCC26077 16 species 1 1848754 0 Actinobacteria bacterium IMCC19121 53 species 1 1848756 Actinobacteria bacterium IMCC26103 38 0 class 567 1 2274 1760 Actinobacteria 649105 0 1643818 387 0 no rank 1 1 genus 387 0 147067 Thermobispora bispora 387 0 2006 1 species 20 9 1 order 6909 Micromonosporales 0 85008 19 91 1 family 6900 Micromonosporaceae 0 28056 4 24 1 genus Micromonospora 1504 0 1873 species 1 47850 443 Micromonospora aurantiaca 0 species 1 1003110 Verrucosispora maris 568 0 1 no rank 0 469 2617518 species 1 648999 469 Micromonospora sp. L5 0 673534 1802 Plantactinospora 0 genus 4 26 1 2631981 1776 0 no rank 3 species 1 2024580 0 Plantactinospora sp. KBS50 529 species 1 2071627 Plantactinospora sp. BB1 564 0 683 Plantactinospora sp. BC1 0 2108470 1 species 0 7 Verrucosispora 84593 1 genus 6 1 21 genus 2871 Actinoplanes 0 1865 1866 0 530 Actinoplanes missouriensis species 1 2626549 1525 0 no rank 3 Actinoplanes sp. N902-109 721 0 649831 1 species species 1 2033844 0 Actinoplanes sp. SE50 402 species 1 134676 0 Actinoplanes sp. SE50/110 402 196914 Actinoplanes friuliensis 795 0 species 1 genus 7 1 3 168694 0 625 Salinispora 1 species Salinispora arenicola 386 0 168697 168695 0 232 Salinispora tropica species 1 31 1 38 order Propionibacteriales 8454 0 85009 31957 0 Propionibacteriaceae 5712 family 105 1 19 1912215 389 0 genus 1 Acidipropionibacterium acidipropionici 389 0 1748 1 species genus 1 1 4 1912216 0 Cutibacterium 931 33011 Cutibacterium granulosum 206 0 species 1 species 1 33010 0 Cutibacterium avidum 378 0 346 Cutibacterium acnes 1747 1 species genus 1 1 2 29404 0 Microlunatus 249 29405 248 Microlunatus phosphovorus 0 species 1 203133 Propionimicrobium 826 0 genus 2 2 1 no rank 1 2633994 0 824 0 824 Propionimicrobium sp. Marseille-P3275 1871034 1 species 1743 1213 Propionibacterium 0 genus 3 1 6 no rank 1 2608905 0 236 671223 0 236 Propionibacterium sp. oral taxon 193 species 1 species 1 1744 Propionibacterium freudenreichii 971 0 0 332 2801844 1 genus 1750 0 Pseudopropionibacterium propionicum 332 species 1 72763 1667 Tessaracoccus 0 genus 5 1 6 357 Tessaracoccus flavescens 0 399497 1 species 1332264 Tessaracoccus aquimaris 456 0 species 1 no rank 1 2635419 566 0 1909732 0 566 Tessaracoccus sp. T2.5-30 species 1 Tessaracoccus flavus 282 0 1610493 1 species family 11 64 1 85015 2704 Nocardioidaceae 0 1 4 4 genus 0 Nocardioides 1014 1839 2045452 0 245 Nocardioides sp. 78 species 1 0 Nocardioides dokdonensis 290 450734 1 species 1 no rank 475 0 2615069 196162 475 Nocardioides sp. JS614 0 species 1 1 genus 487 0 2044 0 487 Pimelobacter simplex 2045 1 species 0 449 116071 1 genus 1 species 449 Micropruina glycogenica 0 75385 182639 Kribbella 445 0 genus 2 1 1 species 1 182640 Kribbella flavida 444 0 2040 Aeromicrobium 245 0 genus 2 1 4 1 species 241 Aeromicrobium erythreum 0 2041 156 1 25 order 0 475814 Bifidobacteriales 85004 family 1 1525 24 31953 0 475658 Bifidobacteriaceae 0 Bifidobacterium 473314 1678 263 1 19 genus species 1 1684 0 Bifidobacterium asteroides 296 655 Bifidobacterium animalis 0 28025 1 species 1 species 914 Bifidobacterium angulatum 0 1683 4275 Bifidobacterium catenulatum 0 1686 2 898 1 species 1 subspecies 3377 Bifidobacterium kashiwanohense 0 630129 species 1 1685 0 29575 Bifidobacterium breve Bifidobacterium pseudolongum 764 0 1694 1 species species 1 33905 Bifidobacterium thermophilum 1962 0 1 species Bifidobacterium scardovii 1023 0 158787 1680 0 Bifidobacterium adolescentis 1908 species 1 Bifidobacterium longum 423582 0 216816 1 species 1 species Bifidobacterium bifidum 4629 0 1681 0 Bifidobacterium pseudocatenulatum 1522 28026 1 species 1 species 143 Bifidobacterium coryneforme 0 1687 1 species 0 209 Bifidobacterium indicum 1691 638619 339 Bifidobacterium actinocoloniiforme 0 species 1 species 1 35760 Bifidobacterium choerinum 561 0 1689 694 Bifidobacterium dentium 0 species 1 1 genus 256 0 196081 78259 0 256 Scardovia inopinata species 1 1 genus 0 296 2701 1 species 0 296 Gardnerella vaginalis 2702 1 1 2 genus 0 Parascardovia 267 196082 78258 Parascardovia denticolens 266 0 species 1 0 808 2039638 11 order family 11 2162846 0 808 4 2 1 genus Candidatus Nanopelagicus 154 0 2039639 0 Candidatus Nanopelagicus hibericus 44 1884915 1 species species 1 1884634 Candidatus Nanopelagicus limnes 57 0 Candidatus Nanopelagicus abundans 51 0 1884916 1 species 0 Candidatus Planktophila 654 622681 5 1 7 genus 0 Candidatus Planktophila vernalis 83 1884907 1 species 1884914 0 146 Candidatus Planktophila dulcis species 1 573600 0 Candidatus Planktophila limnetica 38 species 1 1884905 0 122 Candidatus Planktophila versatilis species 1 Candidatus Planktophila sulfonica 64 0 1884904 1 species 196 Candidatus Planktophila lacus 0 1884913 1 species 3 order 0 719 1643684 0 Nakamurellaceae 719 85031 4 1 3 family 53460 Nakamurella 715 0 genus 2 1 5 1 species 0 Nakamurella multipartita 710 53461 Glycomycetales 539 0 85014 4 1 13 order 85034 Glycomycetaceae 526 0 family 3 34 1 3 1 2 genus 0 492 Stackebrandtia 283810 1 species 489 Stackebrandtia nassauensis 0 283811 order 7 17 1 85013 Frankiales 1776 0 74712 0 1759 Frankiaceae family 20 1 6 10 1 5 genus 0 1739 Frankia 1854 2632575 557 0 no rank 1 1 species 0 557 Frankia sp. EAN1pec 298653 0 Frankia alni 271 1859 1 species species 1 298654 0 Frankia inefficax 678 106370 Frankia casuarinae 223 0 species 1 2 order 0 579 622452 83778 0 579 Kineosporiaceae family 17 1 2 1 genus 562 0 33981 131568 0 Kineococcus radiotolerans 562 species 1 order 2 1643683 50 0 Acidothermaceae 50 0 85032 2 1 2 family 48 0 28048 1 genus 28049 48 Acidothermus cellulolyticus 0 species 1 23 1 37 order 0 15300 Pseudonocardiales 85010 0 15277 Pseudonocardiaceae 2070 205 1 36 family 0 445 142577 1 genus species 1 530584 445 Prauserella marina 0 43356 1035 Kutzneria 0 genus 2 1 5 Kutzneria albida 1030 0 43357 1 species 40566 0 Actinosynnema 1332 genus 1 45 3 1 species Actinosynnema pretiosum 635 0 42197 Actinosynnema mirum 652 0 40567 1 species 2071 492 0 genus 1 103731 Saccharothrix espanaensis 492 0 species 1 457 0 2029 1 genus 457 Kibdelosporangium phytohabitans 0 860235 1 species 7 55 1 genus 4083 Amycolatopsis 0 1813 species 1 208439 529 Amycolatopsis japonica 0 species 1 31958 1110 Amycolatopsis orientalis 0 1233 0 2618356 2 no rank species 1 1911175 749 Amycolatopsis sp. BJA-103 0 species 1 1896961 Amycolatopsis sp. AA4 484 0 1 species 0 Amycolatopsis methanolica 430 1814 1 species Amycolatopsis mediterranei 726 0 33910 1847 0 2950 Pseudonocardia genus 1 79 8 1 species 0 593 Pseudonocardia dioxanivorans 240495 2619320 2278 0 no rank 6 445576 Pseudonocardia sp. AL041005-10 445 0 species 1 466 Pseudonocardia sp. HH130629-09 0 1641402 1 species 339 Pseudonocardia sp. HH130630-07 0 1690815 1 species species 1 1688404 Pseudonocardia sp. EC080610-09 373 0 species 1 1096856 0 Pseudonocardia sp. EC080619-01 358 1096868 0 Pseudonocardia sp. EC080625-04 297 species 1 1835 Saccharopolyspora 592 0 genus 2 5 1 1836 0 587 Saccharopolyspora erythraea species 1 genus 1 165301 777 0 0 Lentzea guizhouensis 777 1586287 1 species genus 2 5 1 674734 490 Alloactinosynnema 0 2636053 0 485 no rank 1 1653480 485 Alloactinosynnema sp. L-07 0 species 1 genus 1 1851 0 328 1 species 328 Saccharomonospora viridis 0 1852 genus 6 1 35 65496 2091 Actinoalloteichus 0 0 355 Actinoalloteichus hymeniacidonis 340345 1 species 2644606 917 0 no rank 2 1612551 0 Actinoalloteichus sp. GBA129-24 560 species 1 species 1 2072503 0 Actinoalloteichus sp. AHMU CJ021 357 0 Actinoalloteichus hoggarensis 244 1470176 1 species species 1 1612552 0 Actinoalloteichus sp. ADI127-7 540 80 0 52018 1 no rank species 1 1650658 0 Actinobacteria bacterium IMCC26256 80 0 32151 Micrococcales 85006 217 1 134 order family 9 21 1 85020 2906 Dermabacteraceae 0 genus 1 472568 0 190 species 1 472569 0 Devriesea agamarum 190 43668 Brachybacterium 2540 0 genus 6 1 18 2017484 Brachybacterium sp. VM2412 723 0 species 1 species 1 2017485 Brachybacterium sp. VR2415 361 0 no rank 1 2623841 0 560 species 1 1903186 Brachybacterium sp. P6-10-X1 560 0 species 1 43669 409 Brachybacterium faecium 0 species 1 1331682 0 Brachybacterium ginsengisoli 469 36739 0 155 genus 1 1 species 0 Dermabacter vaginalis 155 1630135 family 9 71 1 85017 1726 Promicromonosporaceae 0 4 1 3 genus 0 Isoptericola 615 254250 139208 0 233 Isoptericola variabilis species 1 0 Isoptericola dokdonensis 378 372663 1 species 3 9 1 genus Cellulosimicrobium 484 0 157920 no rank 1 2624466 0 240 Cellulosimicrobium sp. TH-20 240 0 1980001 1 species Cellulosimicrobium cellulans 235 0 1710 1 species genus 2 1 1 186188 556 Xylanimonas 0 species 1 186189 Xylanimonas cellulosilytica 555 0 85021 0 Intrasporangiaceae 1584 family 1 39 9 53357 0 288 Intrasporangium genus 1 2 2 1 species 286 Intrasporangium calvum 0 53358 Janibacter 352 0 53457 2 1 12 genus 857417 Janibacter indicus 340 0 species 1 265976 0 Serinicoccus 487 genus 2 1 2 species 1 1758689 485 Serinicoccus sp. JLT9 0 genus 2 1 1 267408 418 Arsenicicoccus 0 no rank 1 2663846 0 417 1 species 417 Arsenicicoccus sp. oral taxon 190 0 1658671 3 2 1 family Dermatophilaceae 222 0 85018 0 220 Dermatophilus 1862 19 1 2 genus 0 201 Dermatophilus congolensis 1863 1 species 6 26 1 family Dermacoccaceae 858 0 145357 233 Luteipulveratus 0 745364 2 1 1 genus 1 species 0 Luteipulveratus mongoliensis 232 571913 0 299 57495 1 genus 1274 Dermacoccus nishinomiyaensis 299 0 species 1 1 5 2 genus 0 300 Kytococcus 57499 species 1 1276 0 295 Kytococcus sedentarius 3 1 1 family Brevibacteriaceae 515 0 85019 0 Brevibacterium 514 1696 4 1 2 genus 1703 510 Brevibacterium linens 0 species 1 85016 928 Cellulomonadaceae 0 family 6 15 1 1707 0 913 Cellulomonas genus 1 21 5 1 species 309 Cellulomonas flavigena 0 1711 1 species Cellulomonas fimi 280 0 1708 2620175 182 0 no rank 1 species 1 2003551 0 182 Cellulomonas sp. PSBB021 species 1 11 121 Cellulomonas gilvus 0 2 no rank 0 114 577468 2 1 1 genus Tropheryma 114 0 2038 0 Tropheryma whipplei 113 2039 1 species family 2 145360 0 395 5 1 2 genus 0 395 Sanguibacter 60919 species 1 60920 Sanguibacter keddieii 390 0 family 37 1 264 1268 12566 Micrococcaceae 0 genus 1 1645 44 0 species 1 1646 0 Renibacterium salmoninarum 44 1 1 2 genus 0 Micrococcus 434 1269 Micrococcus luteus 433 0 1270 1 species 156 0 2078575 1 genus 156 Arthrobacter sp. IHBB 11108 0 1618207 1 species 1868332 Neomicrococcus 158 0 genus 2 1 7 556325 0 151 Neomicrococcus aestuarii species 1 566 0 1742989 1 genus species 1 256701 0 Glutamicibacter arilaitensis 566 36 1 4 genus 0 1592 Pseudarthrobacter 1742993 0 Pseudarthrobacter chlorophenolicus 447 85085 1 species 1 species Pseudarthrobacter sulfonivorans 614 0 121292 361575 495 Pseudarthrobacter phenanthrenivorans 0 species 1 57493 Kocuria 954 0 genus 4 1 15 446860 0 Kocuria flava 302 species 1 72000 311 Kocuria rhizophila 0 species 1 71999 0 326 Kocuria palustris species 1 32207 0 1792 Rothia genus 1 17 3 1 species Rothia mucilaginosa 1553 0 43675 Rothia dentocariosa 222 0 2047 1 species 1742992 0 377 genus 1 1 species 0 Paenarthrobacter aurescens 377 43663 0 Arthrobacter 5915 1663 97 1 15 genus 1 species 0 402 Arthrobacter crystallopoietes 37928 656366 Arthrobacter alpinus 770 0 species 1 0 4646 235627 12 no rank species 1 1806905 308 Arthrobacter sp. ZXY-2 0 2020486 0 379 Arthrobacter sp. YN species 1 1 species 0 Arthrobacter sp. PGP41 466 2079227 1849032 0 254 Arthrobacter sp. U41 species 1 1 species Arthrobacter sp. LS16 641 0 1690248 Arthrobacter sp. QXT-31 424 0 1357915 1 species 1 species 0 Arthrobacter sp. ATCC 21022 208 1771959 290399 0 342 Arthrobacter sp. FB24 species 1 1494608 0 Arthrobacter sp. PAMC 25486 422 species 1 1 species Arthrobacter sp. Rue61a 342 0 1118963 1704044 0 311 Arthrobacter sp. ERGS1:01 species 1 species 1 1652545 0 549 Arthrobacter sp. YC-RL1 2 1 2 genus 0 Sinomonas 314 596707 37927 0 312 Sinomonas atrocyanea species 1 family 1 85022 0 109 genus 1 43673 0 109 1 species Jonesia denitrificans 109 0 43674 family 2 125316 314 0 84756 314 Beutenbergia 0 genus 2 1 3 species 1 84757 Beutenbergia cavernae 311 0 53 1 44 family 0 Microbacteriaceae 9697 85023 0 269 Microterricola 518733 1 1 2 genus 412690 268 Microterricola viridarii 0 species 1 33882 3446 Microbacterium 0 genus 14 40 1 162426 0 Microbacterium hominis 245 species 1 no rank 8 2609290 1974 0 0 176 Microbacterium sp. CGR1 1696072 1 species species 1 2103230 304 Microbacterium sp. str. 'China' 0 1 species 0 Microbacterium sp. No. 7 220 1714373 0 Microbacterium sp. 1.5R 180 1916917 1 species species 1 1938334 0 292 Microbacterium sp. TPU 3598 1795053 298 Microbacterium sp. PAMC 28756 0 species 1 0 322 Microbacterium sp. XT11 367477 1 species 1906742 182 Microbacterium sp. BH-3-3-3 0 species 1 1 species 265 Microbacterium chocolatum 0 84292 300019 397 Microbacterium paludicola 0 species 1 1 species 198 Microbacterium testaceum 0 2033 327 Microbacterium aurum 0 36805 1 species Frondihabitans 410 0 447237 2 2 1 genus 2626248 408 0 no rank 1 species 1 1795630 0 408 Frondihabitans sp. PAMC 28766 6 161 1 genus 1410 Clavibacter 0 1573 0 Clavibacter michiganensis 1249 28447 1 243 5 species 1 subspecies 243 Clavibacter capsici 0 1874630 subspecies 1 31963 280 Clavibacter nebraskensis 0 1 subspecies 0 303 Clavibacter insidiosus 33014 31964 0 Clavibacter sepedonicus 180 subspecies 1 genus 3 1 1 69578 1091 Cryobacterium 0 1 no rank 0 494 2649013 1978566 0 494 Cryobacterium sp. LW097 species 1 596 Cryobacterium arcticum 0 670052 1 species 1759331 0 328 genus 1 1619308 0 328 Cnuibacter physcomitrellae species 1 genus 19 1 4 2034 0 Curtobacterium 849 2 no rank 526 0 257496 1905847 0 Curtobacterium sp. BH-2-1-1 236 species 1 1 species 290 Curtobacterium sp. MR_MD2014 0 1561023 69373 304 Curtobacterium pusillum 0 species 1 1 genus 270 0 337004 0 Microcella alkaliphila 270 279828 1 species 2 genus 0 156 33886 59 Rathayibacter toxicus 0 145458 1 species 33888 0 Rathayibacter tritici 97 species 1 no rank 2 1655488 238 0 1655489 0 238 clade 2 genus 2 529883 238 0 0 80 Candidatus Rhodoluna planktonica 535712 1 species 1 species 158 Rhodoluna lacicola 0 529884 2 9 1 genus 711 Leifsonia 0 110932 1575 702 Leifsonia xyli 0 species 1 0 292 Agromyces 33877 1 1 2 genus 453304 0 Agromyces aureus 291 species 1 1434032 71 0 genus 1 1 species Pontimonas salivibrio 71 0 1159327 1 genus 0 103 1705353 1 species 0 103 Aurantimicrobium minutum 708131 85007 0 45728 Corynebacteriales order 1 342 161 1 114 52 family 0 15186 Corynebacteriaceae 1653 0 Corynebacterium 15072 1716 448 1 51 genus 421 0 2624378 2 no rank 1487956 198 Corynebacterium sp. ATCC 6931 0 species 1 0 Corynebacterium sp. NML98-0116 223 702967 1 species 258224 0 Corynebacterium resistens 224 species 1 1 species 196 Corynebacterium flavescens 0 28028 Corynebacterium aquilae 231 0 203263 1 species Corynebacterium uterequi 349 0 1072256 1 species Corynebacterium marinum 324 0 349751 1 species 1 species Corynebacterium phocae 167 0 161895 species 1 160386 270 Corynebacterium casei 0 108486 0 Corynebacterium falsenii 370 species 1 species 1 169292 0 Corynebacterium aurimucosum 188 161879 140 Corynebacterium kroppenstedtii 0 species 1 1404244 0 179 Corynebacterium glyciniphilum species 1 Corynebacterium urealyticum 368 0 43771 1 species species 1 1223514 0 563 Corynebacterium humireducens species 1 1727 218 Corynebacterium variabile 0 species 1 161899 0 Corynebacterium singulare 141 152794 0 460 Corynebacterium efficiens species 1 species 1 1408191 0 Corynebacterium deserti 306 1 species 0 Corynebacterium epidermidicanis 129 1050174 species 1 401472 0 270 Corynebacterium ureicelerivorans 194 Corynebacterium ulcerans 0 65058 1 species 35755 0 43 Corynebacterium kutscheri species 1 89154 123 Corynebacterium terpenotabidum 0 species 1 38305 0 Corynebacterium vitaeruminis 770 species 1 1 species 394 Corynebacterium frankenforstense 0 1230998 species 1 92706 260 [Brevibacterium] flavum 0 species 1 38289 587 Corynebacterium jeikeium 0 1 species 0 313 Corynebacterium stationis 1705 Corynebacterium lactis 322 0 1231000 1 species 1721 Corynebacterium callunae 209 0 species 1 0 Corynebacterium mustelae 95 571915 1 species species 1 575200 0 Corynebacterium maris 218 species 1 1717 0 514 Corynebacterium diphtheriae species 1 1121358 0 327 Corynebacterium doosanense 0 Corynebacterium imitans 409 156978 1 species species 1 1697 0 Corynebacterium ammoniagenes 183 species 1 1719 239 Corynebacterium pseudotuberculosis 0 species 1 1652495 122 Corynebacterium crudilactis 0 Corynebacterium halotolerans 389 0 225326 1 species 42817 0 278 Corynebacterium argentoratense species 1 1 species 0 318 Corynebacterium testudinoris 136857 191493 0 499 Corynebacterium sphenisci species 1 187491 Corynebacterium glaucum 301 0 species 1 species 1 191610 Corynebacterium atypicum 182 0 0 172 Corynebacterium camporealensis 161896 1 species 43770 0 Corynebacterium striatum 412 species 1 0 474 Corynebacterium simulans 146827 1 species Corynebacterium cystitidis 123 0 35757 1 species 1718 0 640 Corynebacterium glutamicum species 1 0 Segniliparaceae 270 316606 1 1 3 family 2 1 5 genus Segniliparus 269 0 286801 Segniliparus rotundus 264 0 286802 1 species 9 1 57 family Gordoniaceae 2196 0 85026 2053 0 Gordonia 2139 genus 1 25 8 Gordonia terrae 282 0 2055 1 species 354 Gordonia polyisoprenivorans 0 84595 1 species species 1 2054 Gordonia bronchialis 282 0 species 1 1004901 301 Gordonia iterans 0 0 Gordonia phthalatica 400 1136941 1 species 2657482 495 0 no rank 2 337191 0 292 Gordonia sp. KTR9 species 1 species 1 2059875 203 Gordonia sp. YC-JH1 0 86 0 697024 1 no rank 86 0 1847725 1 genus 0 Lawsonella clevelandensis 86 1528099 1 species 1762 0 16345 Mycobacteriaceae family 1 46 57 genus 34 732 1 1763 Mycobacterium 9302 0 804 0 77643 4 species group 78331 0 194 Mycobacterium canettii species 1 206 1 3 species 0 Mycobacterium tuberculosis 610 1773 33894 0 Mycobacterium africanum 201 biotype 1 1765 203 Mycobacterium bovis 0 biotype 1 0 3627 2642494 13 no rank 1 species 0 Mycobacterium sp. YC-RL4 231 1682113 1920667 276 Mycobacterium sp. WY10 0 species 1 0 Mycobacterium sp. VKM Ac-1817D 176 1273687 1 species 212767 0 Mycobacterium sp. JS623 298 species 1 species 1 189918 Mycobacterium sp. KMS 239 0 species 1 2051552 241 Mycobacterium sp. PYR15 0 Mycobacterium sp. QIA-37 244 0 1561223 1 species 336 Mycobacterium sp. NRRL B-3805 0 1570328 1 species 1879023 Mycobacterium sp. djl-10 425 0 species 1 Mycobacterium sp. MCS 235 0 164756 1 species 0 Mycobacterium sp. MOTT36Y 165 1168287 1 species 164757 0 Mycobacterium sp. JLS 280 species 1 1 species Mycobacterium sp. EPa45 481 0 1545728 1769 0 185 Mycobacterium leprae species 1 1 species 212 Mycobacterium kansasii 0 1768 29311 171 Mycobacterium haemophilum 0 species 1 0 289 2249310 1 species group 722731 0 Mycobacterium shigaense 289 species 1 482462 0 387 Mycobacterium dioxanotrophicus species 1 0 2120 120793 8 species group 0 601 Mycobacterium intracellulare 1767 183 1 4 species 1203599 0 Mycobacterium yongonense 79 subspecies 1 1 subspecies Mycobacterium chimaera 250 0 222805 subspecies 1 35617 0 89 Mycobacterium indicus pranii 101 Mycobacterium paraintracellulare 0 1138383 1 species 0 Mycobacterium marseillense 352 701042 1 species species 1 339268 409 Mycobacterium colombiense 0 species 1 1764 0 657 Mycobacterium avium 1 species 0 Mycobacterium marinum 351 1781 261524 0 202 Mycobacterium liflandii species 1 Mycobacterium ulcerans 222 0 1809 1 species 0 5063 1866885 13 genus 1810 Mycobacterium vaccae 501 0 species 1 36814 285 Mycobacterium rhodesiae 0 species 1 1795 336 Mycobacterium neoaurum 0 species 1 1 species 0 303 Mycobacterium litorale 758802 0 Mycobacterium phlei 432 1771 1 species 1791 Mycobacterium aurum 541 0 species 1 1 species 392 Mycobacterium vanbaalenii 0 110539 species 1 1766 219 Mycobacterium fortuitum 0 134601 501 Mycobacterium goodii 0 species 1 species 1 1800 0 Mycobacterium chubuense 376 1 species Mycobacterium thermoresistibile 443 0 1797 1 species 0 248 Mycobacterium gilvum 1804 1772 0 Mycobacterium smegmatis 486 species 1 115 Hoyosella 0 697025 2 1 1 genus 1 species 0 114 Hoyosella subflava 639313 2 genus 532 0 1073531 1788 0 Mycobacterium terrae 246 species 1 1 species 286 Mycobacterium sinense 0 875328 genus 5 670516 1287 0 1 species 0 Mycobacterium saopaulense 121 1578165 1 species Mycobacterium chelonae 162 0 1774 83262 136 Mycobacterium immunogenum 0 species 1 species 1 1520670 232 Mycobacterium stephanolepidis 0 36809 636 Mycobacterium abscessus 0 species 1 498 Tsukamurellaceae 0 85028 4 3 1 family genus 3 10 1 2060 Tsukamurella 495 0 Tsukamurella paurometabola 175 0 2061 1 species 57704 310 Tsukamurella tyrosinosolvens 0 species 1 family 3 85029 0 380 380 Dietzia 0 37914 3 1 2 genus 499555 Dietzia timorensis 157 0 species 1 1 no rank 221 0 2617939 1 species 0 221 Dietzia sp. oral taxon 368 712270 31 1 49 family 10425 Nocardiaceae 0 85025 1817 3745 Nocardia 0 genus 7 1 25 species 1 37326 Nocardia brasiliensis 726 0 Nocardia seriolae 543 0 37332 1 species 37330 406 Nocardia nova 0 species 1 981 Nocardia cyriacigeorgica 0 135487 1 species 0 Nocardia terpenica 488 455432 1 species 1 species Nocardia farcinica 576 0 37329 1827 0 Rhodococcus 6631 genus 1 254 23 species 1 132919 433 Rhodococcus jostii 0 1 species 198 Rhodococcus pyridinivorans 0 103816 no rank 12 192944 0 2754 0 Rhodococcus sp. p52 292 935199 1 species 1570939 Rhodococcus sp. 2G 118 0 species 1 679318 0 153 Rhodococcus sp. WMMA185 species 1 species 1 1807790 0 94 Rhodococcus sp. BH4 1 species Rhodococcus sp. MTM3W5.2 219 0 1805827 1 species 292 Rhodococcus sp. B7740 0 1564114 Rhodococcus sp. WB1 529 0 1033922 1 species 1653478 0 Rhodococcus sp. PBTS 1 281 species 1 0 208 Rhodococcus sp. H-CA8f 1727214 1 species 0 Rhodococcus sp. YL-1 99 1045808 1 species 1 species 0 Rhodococcus sp. PBTS 2 353 1653479 species 1 1723645 Rhodococcus sp. 008 116 0 species 1 1829 0 243 Rhodococcus rhodochrous species 1 43767 0 385 Rhodococcus hoagii 1828 0 294 Rhodococcus fascians species 1 1 species Rhodococcus ruber 339 0 1830 species 1 334542 0 87 Rhodococcus qingshengii species 1 1833 0 230 Rhodococcus erythropolis species 1 37919 Rhodococcus opacus 937 0 0 477 Rhodococcus aetherivorans 191292 1 species 4 1 1 order 827 Catenulisporales 0 414714 family 3 2 1 414877 826 Catenulisporaceae 0 414878 0 824 Catenulispora genus 4 1 2 species 1 304895 0 Catenulispora acidiphila 820 2037 6552 Actinomycetales 0 order 18 4 1 1 1158 17 family 0 Actinomycetaceae 6548 2049 0 1183 Mobiluncus 2050 39 1 2 genus 2051 Mobiluncus curtisii 1144 0 species 1 1 genus 0 663 1069494 1661 0 663 Trueperella pyogenes species 1 0 160 28263 1 genus species 1 28264 160 Arcanobacterium haemolyticum 0 genus 34 1 9 1654 0 Actinomyces 2852 1852377 186 Actinomyces pacaensis 0 species 1 species 1 1912795 0 Actinomyces sp. VUL4_3 81 0 Actinomyces oris 377 544580 1 species 3 no rank 0 1270 2609248 1851395 429 Actinomyces sp. Chiba101 0 species 1 species 1 712122 0 Actinomyces sp. oral taxon 414 476 1 species 0 Actinomyces sp. oral taxon 897 365 2081702 species 1 1960083 284 Actinomyces gaoshouyii 0 111015 0 Actinomyces radicidentis 620 species 1 1 genus 0 276 2529408 52773 Actinomyces meyeri 276 0 species 1 0 Actinotignum 256 1653174 1 1 2 genus species 1 59505 255 Actinotignum schaalii 0 85011 44133 Streptomycetales 0 order 82 65 1 2062 Streptomycetaceae 44068 0 family 81 1 197 13 1 5 genus 0 2488 Kitasatospora 2063 Kitasatospora setae 728 0 2066 1 species species 1 1894 593 Kitasatospora aureofaciens 0 687 0 2633591 1 no rank 2018025 0 Kitasatospora sp. MMS16-BH015 687 species 1 1 species Kitasatospora albolonga 467 0 68173 1883 0 41383 Streptomyces genus 1 1108 75 1912 1535 Streptomyces hygroscopicus 0 species 1 68202 0 Streptomyces fulvissimus 348 species 1 species 1 379067 0 841 Streptomyces bingchenggensis 760 0 1477431 2 species group species 1 1902 Streptomyces coelicolor 361 0 species 1 42239 Streptomyces sampsonii 399 0 67267 0 Streptomyces alboflavus 440 species 1 0 544 Streptomyces glaucescens 1907 1 species 0 470 Streptomyces leeuwenhoekii 1437453 1 species 0 Streptomyces lincolnensis 629 1915 1 species 1930 441 Streptomyces scabiei 0 species 1 species 1 1916 0 349 Streptomyces lividans 38300 0 452 Streptomyces pristinaespiralis species 1 1616117 298 Streptomyces formicae 0 species 1 species 1 408015 0 353 Streptomyces xiamenensis 1 species 0 Streptomyces cyaneogriseus 524 68192 1 species 652 Streptomyces autolyticus 0 75293 0 Streptomyces gilvosporeus 701 553510 1 species 405 Streptomyces rubrolavendulae 0 285473 1 species 1 species 583 Streptomyces alfalfae 0 1642299 1 species 397 Streptomyces collinus 0 42684 33903 Streptomyces avermitilis 356 0 species 1 species 1 1901 0 495 Streptomyces clavuligerus 68280 0 Streptomyces violaceusniger 786 species 1 species 1 1926 Streptomyces reticuli 532 0 1 species 303 Streptomyces pluripotens 0 1355015 68249 991 Streptomyces pactum 0 species 1 species 1 1935 Streptomyces violaceoruber 512 0 12304 0 2593676 24 no rank 1 species 0 573 Streptomyces sp. Mg1 465541 Streptomyces sp. TN58 243 0 234612 1 species 1972846 0 Streptomyces sp. Sge12 616 species 1 0 439 Streptomyces sp. PAMC 26508 1265601 1 species species 1 1661694 496 Streptomyces sp. Tue 6075 0 2135430 512 Streptomyces sp. P3 0 species 1 1 species Streptomyces sp. 3211 322 0 1964449 616 Streptomyces sp. fd1-xmd 0 1812480 1 species 0 622 Streptomyces sp. 769 1262452 1 species species 1 1984801 0 Streptomyces sp. CLI2509 297 1 species 807 Streptomyces sp. CMB-StM0423 0 2059884 1 species 0 Streptomyces sp. SirexAA-E 350 862751 1 species 0 507 Streptomyces sp. CFMR 7 1649184 0 441 Streptomyces sp. S8 1837283 1 species 1 species 0 Streptomyces sp. FR-008 497 206662 1841249 Streptomyces sp. RTd22 691 0 species 1 species 1 2094021 795 Streptomyces sp. WAC00288 0 1725411 0 603 Streptomyces sp. CdTB01 species 1 0 Streptomyces sp. 4F 401 1751294 1 species 1495638 0 Streptomyces sp. M56 759 species 1 1961713 Streptomyces sp. MOE7 395 0 species 1 444103 0 449 Streptomyces sp. CNQ-509 species 1 1 species 0 Streptomyces sp. CCM_MD2014 346 1561022 species 1 1849967 527 Streptomyces sp. SAT1 0 species 1 2049881 0 292 Streptomyces sp. XZHG99 0 537 Streptomyces chartreusis 1969 1 species species 1 1038928 288 Streptomyces xinghaiensis 0 1 species 0 Streptomyces albulus 572 68570 1 species Streptomyces albus 1176 0 1888 928 0 629295 2 species group 1482558 0 440 species subgroup 1 1 species 0 Streptomyces globisporus 440 1908 1482596 0 488 species subgroup 1 1911 0 Streptomyces griseus 488 species 1 1 species Streptomyces peucetius 447 0 1950 species 1 146923 0 Streptomyces parvulus 475 68214 0 Streptomyces griseochromogenes 535 species 1 1914 Streptomyces lavendulae 467 0 species 1 1 species 0 Streptomyces puniciscabiei 573 164348 0 331 Streptomyces pratensis 1169025 1 species 1 species 0 Streptomyces lydicus 1301 47763 0 690 Streptomyces malaysiensis 92644 1 species 446 Streptomyces ambofaciens 0 1889 1 species 0 Streptomyces vietnamensis 591 362257 1 species Streptomyces sp. S10(2016) 616 0 1783515 1 species 1971 0 Streptomyces noursei 403 species 1 0 278 Streptomyces niveus 193462 1 species species 1 1940 Streptomyces albireticuli 509 0 species 1 29303 829 Streptomyces cattleya 0 1 species 0 Streptomyces venezuelae 990 54571 1643682 1293 Geodermatophilales 0 order 6 8 1 family 32 1 5 85030 0 Geodermatophilaceae 1285 0 348 1860 1 genus 1 species 348 Geodermatophilus obscurus 0 1861 0 208 38501 1 genus species 1 138336 Blastococcus saxobsidens 208 0 6 1 2 genus 0 Modestobacter 697 88138 1 species 691 Modestobacter marinus 0 477641 order 1 622450 0 258 622451 0 258 family 1 1 genus 258 0 1849 1 species 0 Actinopolyspora erythraea 258 414996 85012 0 Streptosporangiales 4474 order 28 1 16 16 1 7 family 0 Nocardiopsaceae 1965 83676 genus 3 1 2 83677 0 281 Thermobifida 2021 0 Thermobifida fusca 278 species 1 genus 4 12 1 2013 Nocardiopsis 1668 0 species 1 280236 559 Nocardiopsis gilva 0 Nocardiopsis alba 380 0 53437 1 species 2014 717 Nocardiopsis dassonvillei 0 species 1 family 15 1 5 2004 0 1822 Streptosporangiaceae Streptosporangium 779 0 2000 2 4 1 genus 1 species Streptosporangium roseum 775 0 2001 0 Nonomuraea 1028 83681 1 12 2 genus 1016 0 2593643 1 no rank species 1 1909395 0 Nonomuraea sp. ATCC 55076 1016 0 Thermomonosporaceae 659 2012 1 2 3 family 2019 Thermomonospora 657 0 genus 2 1 7 Thermomonospora curvata 650 0 2020 1 species 5 class 0 749 84995 order 8 1 5 84996 0 749 Rubrobacterales 84997 0 Rubrobacteraceae 741 family 4 1 4 42255 737 Rubrobacter 0 genus 3 4 1 1 species Rubrobacter radiotolerans 211 0 42256 49319 0 Rubrobacter xylanophilus 522 species 1 84998 Coriobacteriia 39708 0 class 30 570 1 1643822 0 29719 Eggerthellales order 1 708 17 1643826 0 Eggerthellaceae 29011 family 2332 1 16 0 3548 Gordonibacter 644652 7 1 3 genus 1335613 0 Gordonibacter urolithinfaciens 1840 species 1 1701 Gordonibacter massiliensis 0 1841863 1 species 84111 16437 Eggerthella 0 genus 3 110 1 1 no rank 0 2811 2648737 1 species 0 2811 Eggerthella sp. YY7918 502558 species 1 84112 13516 Eggerthella lenta 0 genus 1 1 2 447020 0 2626 Adlercreutzia 1 species 2625 Adlercreutzia equolifaciens 0 446660 genus 2 1 2 1981050 0 Phoenicibacter 1615 1944646 1613 Phoenicibacter massiliensis 0 species 1 genus 1 84162 0 406 84163 0 406 Cryptobacterium curtum species 1 2 8 1 genus 1421 Slackia 0 84108 0 Slackia heliotrinireducens 1413 84110 1 species 3 1 2 genus 0 626 Denitrobacterium 79603 623 Denitrobacterium detoxificans 0 79604 1 species order 1 450 12 84999 0 9419 Coriobacteriales 84107 0 Coriobacteriaceae 4639 family 106 1 5 1 no rank 0 848 84113 848 Coriobacteriaceae bacterium 68-1-3 0 1531429 1 species 33870 0 802 genus 1 0 802 Coriobacterium glomerans 33871 1 species genus 2 75 1 102106 Collinsella 2883 0 species 1 74426 0 2808 Collinsella aerofaciens 4330 Atopobiaceae 0 1643824 6 92 1 family 2767353 322 0 genus 1 1 species Atopobium parvulum 322 0 1382 genus 4 1 59 133925 3916 Olsenella 0 133926 0 1211 Olsenella uli species 1 2638792 800 0 no rank 1 0 Olsenella sp. oral taxon 807 800 712411 1 species Olsenella sp. Marseille-P2300 1846 0 1805478 1 species 3 phylum 311 0 67819 1663419 Fimbriimonadia 311 0 class 3 1 1 1663425 Fimbriimonadales 310 0 order 2 8 1 family 1 1663426 0 302 genus 1 1005038 0 302 species 1 1005039 0 Fimbriimonas ginsengisoli 302 100 0 1859062 2 no rank 262406 0 Thermobaculum 100 genus 8 1 2 166501 Thermobaculum terrenum 92 0 species 1 26622 0 1798711 138 clade 1 21 138 phylum 0 26622 Cyanobacteria 1117 37 subclass 0 7343 1301283 order 16 43 1 1150 2519 Oscillatoriales 0 1 1 4 family 0 540 Microcoleaceae 1892252 1205 327 0 genus 1 species 1 1206 327 Trichodesmium erythraeum 0 genus 2 1 1 44471 Microcoleus 212 0 no rank 1 2642155 211 0 1 species 0 Microcoleus sp. PCC 7113 211 1173027 1892251 376 0 family 1 1 genus 0 376 63132 0 376 2648775 1 no rank species 1 1173025 0 376 Geitlerinema sp. PCC 7407 family 2 3 1 1892255 Gomontiellaceae 241 0 0 238 241421 1 genus 241425 0 Crinalium epipsammum 238 species 1 1 1 3 family 0 Cyanothecaceae 152 1892249 43988 0 Cyanothece 151 genus 1 8 2 1 no rank 143 0 2649277 species 1 395961 143 Cyanothece sp. PCC 7425 0 1892254 1167 Oscillatoriaceae 0 family 5 1 1 0 483 1155738 1 genus 0 483 Moorea producens 1155739 1 species 1158 683 Oscillatoria 0 genus 3 1 2 1 species 0 433 Oscillatoria nigro-viridis 482564 1 species 0 248 Oscillatoria acuminata 118323 21 3 1 order 4824 Chroococcales 0 1118 1890452 495 0 family 1 genus 1 102234 495 0 1 species 0 Cyanobacterium aponinum 495 379064 1890450 Aphanothecaceae 1705 0 family 8 2 1 genus 1 1453359 81 0 0 81 Candidatus Atelocyanobacterium thalassa 713887 1 species 172 0 92682 1 no rank 172 0 76023 1 genus 172 0 2632878 1 no rank 172 Halothece sp. PCC 7418 0 65093 1 species 2 genus 0 762 2546365 2 species 762 0 2546366 1 strain 0 388 Cyanothece sp. PCC 8801 41431 0 374 Cyanothece sp. PCC 8802 395962 1 strain 1 genus 0 157 263510 species 1 2546360 157 0 157 Cyanothece sp. ATCC 51142 0 43989 1 strain 0 531 28070 2 genus 2546359 0 266 species 1 497965 266 Cyanothece sp. PCC 7822 0 strain 1 species 1 2546356 265 0 strain 1 65393 Cyanothece sp. PCC 7424 265 0 family 7 10 1 1890464 Chroococcaceae 1706 0 1173 Geminocystis 0 669357 3 2 1 genus 1171 0 2625037 2 no rank 0 Geminocystis sp. NIES-3708 548 1615909 1 species 1 species 0 Geminocystis sp. NIES-3709 623 1617448 102231 0 199 Gloeocapsa genus 1 1 2 0 198 2623012 1 no rank 1 species Gloeocapsa sp. PCC 7428 198 0 1173026 genus 1 268175 324 0 0 324 2648896 1 no rank 1 species 324 Chondrocystis sp. NIES-4102 0 2005460 1 1 4 family 0 Microcystaceae 915 1890449 Microcystis 914 0 1125 3 1 1 genus Microcystis aeruginosa 410 0 1126 1 species no rank 1 2643300 503 0 species 1 1967666 0 Microcystis sp. MC19 503 52604 0 Pleurocapsales 768 order 1 5 5 2 family 514 0 1890498 2 genus 0 514 102115 species 1 102116 315 Stanieria cyanosphaera 0 2642663 0 199 no rank 1 1 species 0 199 Stanieria sp. NIES-3757 1807358 0 249 Hyellaceae 1890500 5 1 2 family 244 0 44474 1 genus 54308 0 244 Pleurocapsa minor species 1 1890505 0 187 order 3 187 Chroococcidiopsidaceae 0 1890528 3 1 1 family 1 2 2 genus 0 186 Chroococcidiopsis 54298 Chroococcidiopsis thermalis 184 0 54299 1 species 307596 0 680 Gloeobacteria class 6 1 6 8 1 5 order 0 674 Gloeobacterales 307595 4 1 7 family Gloeobacteraceae 666 0 1890422 0 Gloeobacter 659 33071 10 1 3 genus species 1 1416614 Gloeobacter kilaueensis 415 0 1 species Gloeobacter violaceus 234 0 33072 1161 6308 Nostocales 0 order 30 1 5 1185 0 393 Rivulariaceae family 1 2 3 373984 391 Rivularia 0 genus 2 16 1 no rank 1 2676603 375 0 373994 0 375 Rivularia sp. PCC 7116 species 1 10 1 16 family 0 3636 Nostocaceae 1162 genus 2 264688 0 427 species 1 1164 215 Trichormus azollae 0 264691 0 212 Trichormus variabilis species 1 Nostoc 2125 0 1177 10 1 28 genus Nostoc flagelliforme 387 0 1306274 1 species 2593658 1447 0 no rank 7 317936 0 Nostoc sp. PCC 7107 134 species 1 species 1 28072 0 Nostoc sp. PCC 7524 263 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 223 0 1618022 1 species species 1 1261031 0 225 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species 1 1751286 0 353 Nostoc sp. NIES-3756 1869241 Nostoc sp. CENA543 110 0 species 1 species 1 103690 139 Nostoc sp. PCC 7120 0 species 1 272131 Nostoc punctiforme 263 0 1163 0 1074 genus 3 2619674 0 750 no rank 2 0 344 Anabaena sp. WA102 1647413 1 species species 1 46234 0 Anabaena sp. 90 406 1165 0 324 Anabaena cylindrica species 1 no rank 1 1219117 313 0 Nostocales cyanobacterium HT-58-2 313 0 1940762 1 species family 1 1892263 314 0 1 genus 0 314 1190 1 no rank 314 0 494603 1752063 0 Fischerella sp. NIES-3754 314 species 1 family 8 2661849 1647 0 8 29 1 genus 1647 Calothrix 0 1186 species 1 32054 0 Calothrix parietina 287 1331 0 2619626 6 no rank species 1 99598 126 Calothrix sp. PCC 7507 0 2005461 0 287 Calothrix sp. NIES-4101 species 1 1 species Calothrix sp. NIES-3974 174 0 2005462 1954171 154 Calothrix sp. NIES-2098 0 species 1 0 151 Calothrix sp. 336/3 1337936 1 species 2005469 Calothrix sp. NIES-4071 439 0 species 1 1 no rank 0 125 1983111 718217 cyanobacterium endosymbiont of Epithemia turgida 125 0 species 1 order 55 73 1 1890424 Synechococcales 11190 0 4 family 0 1323 1213 1218 1323 Prochlorococcus 0 genus 4 1 3 1 species 0 Prochlorococcus marinus 1078 1219 no rank 2 2627481 0 242 1501268 62 Prochlorococcus sp. MIT 0604 0 species 1 1501269 0 180 Prochlorococcus sp. MIT 0801 species 1 2 family 159 0 2303730 170610 0 Halomicronema 159 genus 1 1 2 1209493 158 Halomicronema hongdechloris 0 species 1 11 1 5 family 0 Merismopediaceae 1307 1890428 1142 0 1296 Synechocystis genus 1 21 4 0 1275 2640012 3 no rank 1 species Synechocystis sp. PCC 6803 407 0 1148 1 species 0 Synechocystis sp. PCC 6714 461 1147 Synechocystis sp. IPPAS B-1465 407 0 2116702 1 species Pseudanabaenaceae 228 0 1890436 2 5 1 family 1152 223 0 genus 1 1 no rank 0 223 2593292 1 species 223 Pseudanabaena sp. PCC 7367 0 82654 1890438 967 Leptolyngbyaceae 0 family 6 5 1 962 Leptolyngbya 0 47251 5 2 1 genus species 1 1184 225 Leptolyngbya boryana 0 no rank 3 2650499 735 0 1080068 0 385 Leptolyngbya sp. O-77 species 1 1752064 Leptolyngbya sp. NIES-3755 192 0 species 1 0 Leptolyngbya sp. PCC 7376 158 111781 1 species 3 5 1 family Acaryochloridaceae 331 0 1890429 0 326 Acaryochloris 155977 1 1 2 genus 0 Acaryochloris marina 325 155978 1 species 32 35 1 family 6802 Synechococcaceae 0 1890426 13034 158 0 genus 1 species 1 292566 0 Dactylococcopsis salina 158 4980 Synechococcus 0 1129 26 1 97 genus 1 species 0 Synechococcus elongatus 213 32046 0 Synechococcus lividus 154 33070 1 species 0 4516 2626047 23 no rank 1 species 142 Synechococcus sp. KORDI-100 0 1280380 316279 Synechococcus sp. CC9902 98 0 species 1 species 1 110662 0 338 Synechococcus sp. CC9605 species 1 374982 0 Synechococcus sp. PCC 73109 115 1 species 90 Synechococcus sp. PCC 8807 0 195248 277 Synechococcus sp. WH 7803 0 32051 1 species species 1 64471 0 Synechococcus sp. CC9311 166 29410 0 Synechococcus sp. WH 8103 165 species 1 234 Synechococcus sp. UTEX 2973 0 1350461 1 species species 1 32049 0 Synechococcus sp. PCC 7002 101 1 species Synechococcus sp. SynAce01 261 0 1916956 1 species 184 Synechococcus sp. PCC 7502 0 1173263 Synechococcus sp. PCC 7117 31 0 195498 1 species 0 Synechococcus sp. RCC307 118 316278 1 species 1 species 0 149 Synechococcus sp. PCC 6312 195253 Synechococcus sp. WH 8109 274 0 166314 1 species species 1 585423 Synechococcus sp. KORDI-49 205 0 1827144 0 Synechococcus sp. NIES-970 131 species 1 321327 0 Synechococcus sp. JA-3-3Ab 459 species 1 1 species Synechococcus sp. WH 8102 159 0 84588 0 458 Synechococcus sp. JA-2-3B'a(2-13) 321332 1 species 374981 0 Synechococcus sp. PCC 7003 117 species 1 1 species 0 244 Synechococcus sp. KORDI-52 585425 22 1 3 genus 0 Cyanobium 1540 167375 species 1 59930 0 Cyanobium gracile 772 1 no rank 746 0 2627006 1851505 Cyanobium sp. NIES-981 746 0 species 1 1 genus 0 89 146785 89 Thermosynechococcus elongatus 0 146786 1 species phylum 43 1 1 200795 Chloroflexi 6148 0 0 Ardenticatenia 897 1382928 1 10 5 class 1382929 887 Ardenticatenales 0 order 4 1 4 1 1 3 family 0 883 Ardenticatenaceae 1382930 1988031 0 Candidatus Promineofilum 882 genus 1 21 2 0 861 Candidatus Promineofilum breve 1806508 1 species 0 1443 292625 6 class 292629 Anaerolineales 1443 0 order 6 1 4 0 1439 Anaerolineaceae 292628 2 1 5 family 2019482 276 Brevefilum 0 genus 2 1 1 0 Brevefilum fermentans 275 1986204 1 species 233189 513 0 genus 1 167964 0 Anaerolinea thermophila 513 species 1 1324991 0 648 no rank 1 Anaerolineaceae bacterium oral taxon 439 648 0 1889813 1 species 475962 0 565 class 4 475963 0 565 Caldilineales order 3 1 4 475964 Caldilineaceae 562 0 family 3 1 4 genus 2 4 1 233191 Caldilinea 558 0 1 species 554 Caldilinea aerophila 0 133453 0 Dehalococcoidia 1103 301297 2 1 9 class order 5 2 1 1202465 607 Dehalococcoidales 0 0 605 Dehalococcoidaceae 1202464 3 1 4 family genus 3 2 1 61434 602 Dehalococcoides 0 no rank 1 237581 0 82 1 species 0 82 Dehalococcoides sp. UCH007 1522671 Dehalococcoides mccartyi 518 0 61435 1 species 670486 494 Dehalogenimonas 0 genus 3 1 1 206 Dehalogenimonas formicexedens 0 1839801 1 species species 1 552810 287 Dehalogenimonas lykanthroporepellens 0 0 Thermomicrobia 423 189775 2 1 8 class 4 subclass 249 0 85000 order 2 1 4 85001 0 Sphaerobacterales 249 247 0 255728 3 suborder 3 3 1 family Sphaerobacteraceae 247 0 85002 0 244 Sphaerobacter 2056 10 1 2 genus species 1 2057 0 234 Sphaerobacter thermophilus 3 1 1 order 172 Thermomicrobiales 0 189776 171 Thermomicrobiaceae 0 189777 2 1 1 family 1 genus 0 170 499 species 1 500 Thermomicrobium roseum 170 0 32061 1716 Chloroflexia 0 class 10 1 1 order 9 4 1 32064 1715 Chloroflexales 0 4 suborder 0 659 1508594 5 1 4 family 0 Chloroflexaceae 659 1106 genus 3 1107 0 654 128 Chloroflexus aggregans 0 152260 1 species 1108 0 Chloroflexus aurantiacus 526 species 1 265 2 strain 1 480224 0 Chloroflexus sp. Y-400-fl 261 suborder 4 1508595 0 1052 family 4 15 1 1508635 1052 Roseiflexaceae 0 120961 0 1037 Roseiflexus genus 3 1 3 species 1 120962 428 Roseiflexus castenholzii 0 0 606 2609473 1 no rank 357808 Roseiflexus sp. RS-1 606 0 species 1 1297 0 11078 phylum 35 35 37 1 class Deinococci 11078 0 188787 3 order 0 366 2762275 0 Trueperaceae 366 332247 1 2 3 family genus 2 1 24 332248 Truepera 364 0 species 1 332249 0 340 Truepera radiovictrix order 1 34 15 118964 0 7418 Deinococcales family 14 1 35 183710 Deinococcaceae 7384 0 13 105 1 genus 7349 Deinococcus 0 1298 0 Deinococcus proteolyticus 528 55148 1 species 432329 465 Deinococcus peraridilitoris 0 species 1 no rank 1 2623546 0 608 species 1 2080419 608 Deinococcus sp. NW-56 0 552 Deinococcus puniceus 0 1182568 1 species 310783 0 400 Deinococcus deserti species 1 640 Deinococcus soli Cha et al. 2016 0 1309411 1 species 1 species 476 Deinococcus geothermalis 0 68909 969 Deinococcus gobiensis 0 502394 1 species species 1 1299 0 546 Deinococcus radiodurans 0 477 Deinococcus maricopensis 309887 1 species 1182571 841 Deinococcus swuensis 0 species 1 1 species 0 Deinococcus actinosclerus 742 1768108 1 81 16 order 0 3257 Thermales 68933 15 1 13 family Thermaceae 3176 0 188786 0 Thermus 1668 270 1 37 8 genus 0 Thermus oshimai 259 56957 1 species 0 Thermus scotoductus 158 37636 1 species 456163 175 Thermus parvatiensis 0 species 1 Thermus thermophilus 540 0 274 1 species 1 species 0 Thermus aquaticus 217 271 1 no rank 0 139 2619321 1 species 0 Thermus sp. CCB_US3_UF1 139 1111069 1 species 0 Thermus brockianus 143 56956 Marinithermus 152 0 186191 2 3 1 genus Marinithermus hydrothermalis 149 0 186192 1 species genus 3 23 1 65551 Meiothermus 705 0 species 1 52022 226 Meiothermus silvanus 0 Meiothermus ruber 456 0 277 1 species genus 1 208447 638 0 1 species 0 Oceanithermus profundus 638 187137 1239 0 Firmicutes 2830527 phylum 57 1 694 no rank 2 33974 541 0 Ndongobacter 541 0 1930845 2 2 1 genus 1871025 Ndongobacter massiliensis 539 0 species 1 91061 Bacilli 218339 0 class 424 1 157 97842 Lactobacillales 0 186826 163 1 2449 order family 8 3 1 186827 Aerococcaceae 1869 0 genus 7 1 23 1375 Aerococcus 1866 0 128944 0 341 Aerococcus urinaehominis species 1 1 species 311 Aerococcus urinaeequi 0 51665 1 species Aerococcus sanguinicola 199 0 119206 0 Aerococcus viridans 251 1377 1 species species 1 1376 0 356 Aerococcus urinae species 1 87541 385 Aerococcus christensenii 0 58 119 1 family 21060 Lactobacillaceae 0 33958 2767879 0 1575 genus 6 species 1 1847728 290 Lactobacillus allii 0 species 1 392416 0 Lactobacillus crustorum 178 1 species 336 Lactobacillus ginsenosidimutans 0 1007676 species 1 1602 211 Lactobacillus alimentarius 0 1612 243 Lactobacillus farciminis 0 species 1 0 Lactobacillus heilongjiangensis 317 1074467 1 species 0 620 2767889 2 genus 257 Lactobacillus backii 0 375175 1 species 1610 0 Lactobacillus coryniformis 363 species 1 genus 577 1 16 1578 0 Lactobacillus 6154 1 species 0 Lactobacillus kefiranofaciens 196 267818 Lactobacillus acidophilus 194 0 1579 1 species Lactobacillus jensenii 263 0 109790 1 species species 1 1596 609 Lactobacillus gasseri 0 1 species 773 Lactobacillus delbrueckii 0 1584 1 species 989 Lactobacillus johnsonii 0 33959 Lactobacillus acetotolerans 328 0 1600 1 species 662 Lactobacillus amylovorus 0 1604 1 species 52242 333 Lactobacillus gallinarum 0 species 1 species 1 1587 458 Lactobacillus helveticus 0 0 115 Lactobacillus amylolyticus 83683 1 species no rank 4 2620435 0 657 1 species 120 Lactobacillus sp. wkB8 0 1545702 Lactobacillus sp. CBA3606 205 0 2099789 1 species 0 175 Lactobacillus sp. CBA3605 2099788 1 species 1 species 0 157 Lactobacillus sp. D1501 2108362 1 genus 0 126 2767877 1 species 0 Lactobacillus kunkeei 126 148814 0 154 2767890 1 genus Lactobacillus hokkaidonensis 154 0 1193095 1 species 2767887 0 2177 genus 4 1094 Lactobacillus salivarius 0 1624 1 species 89059 0 291 Lactobacillus acidipiscis species 1 0 496 Lactobacillus ruminis 1623 1 species species 1 1601 0 Lactobacillus agilis 296 0 Pediococcus 1257 1253 1 1 6 genus 1 species 0 Pediococcus inopinatus 218 114090 1 species Pediococcus damnosus 268 0 51663 1 species 0 280 Pediococcus pentosaceus 1255 169 Pediococcus claussenii 0 187452 1 species species group 1 1670797 321 0 1 species 321 Pediococcus acidilactici 0 1254 2767876 1531 0 genus 1 1 species 0 Lactobacillus amylophilus 1531 1603 genus 2 2767881 246 0 1 species 129 Lactobacillus lindneri 0 53444 1 species 0 117 Lactobacillus sanfranciscensis 1625 2767893 0 680 genus 3 1 species Lactobacillus curieae 293 0 1138822 1581 0 Lactobacillus buchneri 254 species 1 133 Lactobacillus parabuchneri 0 152331 1 species genus 3 2767886 804 0 267363 161 Lactobacillus zymae 0 species 1 1 species 164 Lactobacillus koreensis 0 637971 species 1 1580 0 479 Lactobacillus brevis 0 1344 2742598 3 genus species 1 1598 0 Lactobacillus reuteri 668 species 1 97478 0 Lactobacillus mucosae 376 300 Lactobacillus fermentum 0 1613 1 species 2767842 1155 0 genus 3 Lactobacillus paraplantarum 191 0 60520 1 species 1590 670 Lactobacillus plantarum 0 species 1 0 Lactobacillus pentosus 294 1589 1 species 3 genus 2060 0 2759736 1 species Lactobacillus paracasei 878 0 1597 47715 0 286 Lactobacillus rhamnosus species 1 1582 896 Lactobacillus casei 0 species 1 2 genus 0 823 2767885 species 1 28038 297 Lactobacillus curvatus 0 1599 0 526 Lactobacillus sakei species 1 genus 1 2767892 0 235 species 1 240427 0 Lactobacillus paracollinoides 235 Streptococcaceae 50247 0 1300 49 1109 1 family Streptococcus 46793 0 1301 43 1494 1 genus 1 species 0 Streptococcus suis 10022 1307 Streptococcus parauberis 813 0 1348 1 species 0 1180 Streptococcus salivarius 1304 1 species species 1 1349 166 Streptococcus uberis 0 257 Streptococcus pantholopis 0 1811193 1 species 671232 7717 0 species group 3 1 species Streptococcus constellatus 1935 0 76860 1 species Streptococcus intermedius 620 0 1338 1 species 5162 Streptococcus anginosus 0 1328 0 Streptococcus cristatus 259 45634 1 species species 1 400065 0 331 Streptococcus merionis species 1 1308 Streptococcus thermophilus 590 0 species 1 1302 Streptococcus gordonii 742 0 0 Streptococcus agalactiae 2456 1311 1 species 746 Streptococcus pyogenes 0 1314 1 species 1313 0 Streptococcus pneumoniae 836 species 1 1147 Streptococcus oralis 0 1303 1 species 119603 992 0 species group 2 species 1 1334 Streptococcus dysgalactiae 363 0 1336 0 629 Streptococcus equi species 1 0 Streptococcus mutans 390 1309 1 species 102684 0 Streptococcus infantarius 895 species 1 315405 0 931 Streptococcus gallolyticus species 1 1 species 662 Streptococcus lutetiensis 0 150055 species 1 1814128 0 251 Streptococcus halotolerans 257758 275 Streptococcus pseudopneumoniae 0 species 1 1346 0 Streptococcus iniae 220 species 1 1305 0 796 Streptococcus sanguinis species 1 no rank 7 2608887 7722 0 280 Streptococcus sp. NPS 308 0 1902136 1 species species 1 1156431 Streptococcus sp. I-G2 2401 0 Streptococcus sp. 'group B' 214 0 1319 1 species 391 Streptococcus sp. FDAARGOS_192 0 1839799 1 species species 1 1156433 0 2639 Streptococcus sp. I-P16 712633 659 Streptococcus sp. oral taxon 431 0 species 1 1759399 1138 Streptococcus sp. A12 0 species 1 0 281 Streptococcus pluranimalium 82348 1 species 1318 0 Streptococcus parasanguinis 508 species 1 59310 0 Streptococcus macedonicus 254 species 1 1 species 223 Streptococcus marmotae 0 1825069 1 species 0 168 Streptococcus himalayensis 1888195 Streptococcus acidominimus 951 0 1326 1 species 0 1053 Streptococcus mitis 28037 1 species 197614 0 1154 Streptococcus pasteurianus species 1 1335 0 Streptococcus equinus 311 species 1 0 2345 Lactococcus 1357 5 1 5 genus 1364 0 Lactococcus piscium 286 species 1 species 1 1358 1320 Lactococcus lactis 0 1366 196 Lactococcus raffinolactis 0 species 1 Lactococcus garvieae 538 0 1363 1 species 16 family 2733 0 81850 46255 Weissella 787 0 genus 6 1 3 1 species 0 218 Weissella koreensis 165096 137591 157 Weissella cibaria 0 species 1 1 species 0 Weissella jogaejeotgali 126 1631871 759620 0 123 Weissella ceti species 1 1 species 0 160 Weissella paramesenteroides 1249 Leuconostoc 1866 0 1243 9 1 7 genus species 1 1245 Leuconostoc mesenteroides 426 0 255248 Leuconostoc garlicum 149 0 species 1 136609 327 Leuconostoc kimchii 0 species 1 2685106 158 0 no rank 1 0 158 Leuconostoc sp. C2 979982 1 species 1246 0 160 Leuconostoc lactis species 1 species 1 1244 0 317 Leuconostoc gelidum 145 Leuconostoc carnosum 0 1252 1 species 177 Leuconostoc citreum 0 33964 1 species 46254 0 80 genus 1 species 1 1247 Oenococcus oeni 80 0 263855 0 153 no rank 1 1 species 153 Lactobacillales bacterium 0 1993866 family 11 1 3 186828 2490 Carnobacteriaceae 0 genus 2 1 13 191769 494 Marinilactibacillus 0 0 481 2632303 1 no rank 1911586 0 481 Marinilactibacillus sp. 15R species 1 1 1 5 genus 0 1187 Carnobacterium 2747 species 1 147709 Carnobacterium inhibens 283 0 564 0 257487 2 no rank species 1 1564681 296 Carnobacterium sp. CP1 0 species 1 208596 0 Carnobacterium sp. 17-4 268 2751 Carnobacterium maltaromaticum 339 0 species 1 0 806 Jeotgalibaca 1470540 8 1 3 genus 708126 0 317 Jeotgalibaca dankookensis species 1 2621505 0 481 no rank 1 481 Jeotgalibaca sp. PTS2502 0 1903686 1 species 81852 16841 Enterococcaceae 0 family 19 96 1 51668 0 774 Tetragenococcus genus 1 3 2 1 species Tetragenococcus halophilus 771 0 51669 1350 Enterococcus 15031 0 genus 12 1 597 53345 0 Enterococcus durans 450 species 1 species 1 1354 Enterococcus hirae 283 0 Enterococcus thailandicus 312 0 417368 1 species Enterococcus faecium 8372 0 1352 1 species species 1 53346 Enterococcus mundtii 300 0 0 Enterococcus wangshanyuanii 264 2005703 1 species 1 species 0 Enterococcus casseliflavus 870 37734 3 no rank 1303 0 2608891 371 Enterococcus sp. FDAARGOS_163 0 2060306 1 species 2057791 Enterococcus sp. CR-Ec1 336 0 species 1 Enterococcus sp. FDAARGOS_375 596 0 2060307 1 species 1351 0 2280 Enterococcus faecalis species 1 2 1 1 genus Melissococcus 445 0 33969 1 species 444 Melissococcus plutonius 0 33970 2 genus 0 495 2737 519472 0 279 Vagococcus teuberi species 1 species 1 633807 Vagococcus penaei 216 0 260 212 1 order Bacillales 120340 0 1385 101 1 115 family 0 52702 Bacillaceae 186817 0 1316 2675229 2 genus 264697 0 Bacillus muralis 429 species 1 species 1 1478 0 887 Bacillus simplex genus 2 1329200 0 918 species 1 1221500 Fictibacillus phosphorivorans 558 0 0 360 Fictibacillus arsenicus 255247 1 species 2675234 0 1742 genus 5 1 species 419 Bacillus lehensis 0 300825 79880 Bacillus clausii 471 0 species 1 1 species 0 262 Bacillus pseudofirmus 79885 86665 0 235 Bacillus halodurans species 1 1 species 0 Bacillus krulwichiae 355 199441 2 2 1 genus 358 Amphibacillus 0 29331 species 1 1449 Amphibacillus xylanus 356 0 genus 5 1 2 182709 0 532 Oceanobacillus 182710 Oceanobacillus iheyensis 527 0 species 1 1 genus 555 0 1906945 1426 0 555 Parageobacillus thermoglucosidasius species 1 0 1177 2675230 2 genus 1 species Bacillus kochii 600 0 859143 1 species 0 Bacillus oceanisediminis 577 665099 2 1 6 genus 0 1735 Anoxybacillus 150247 species 1 294699 0 387 Anoxybacillus amylolyticus 1 species 0 Anoxybacillus flavithermus 447 33934 2639704 533 0 no rank 2 1490052 0 269 Anoxybacillus sp. B2M1 species 1 264 Anoxybacillus sp. B7M1 0 1490057 1 species 0 Anoxybacillus gonensis 366 198467 1 species 2 genus 0 749 45667 0 345 Halobacillus halophilus 1570 1 species 0 Halobacillus mangrovi 404 402384 1 species Salimicrobium 455 0 351195 2 1 1 genus 1 species Salimicrobium jeotgali 454 0 1230341 400634 Lysinibacillus 2081 0 genus 5 15 1 1 species 0 722 Lysinibacillus fusiformis 28031 730 Lysinibacillus sphaericus 0 1421 1 species 1145276 0 341 Lysinibacillus varians species 1 no rank 1 2636778 273 0 2072025 0 Lysinibacillus sp. YS11 273 species 1 84406 0 Virgibacillus 2122 genus 7 1 7 1 species 0 Virgibacillus necropolis 365 163877 2 no rank 633 0 2620237 species 1 403957 0 Virgibacillus sp. SK37 314 species 1 1911587 0 Virgibacillus sp. 6R 319 species 1 1473 Virgibacillus pantothenticus 377 0 2017483 359 Virgibacillus phasianinus 0 species 1 0 Virgibacillus halodenitrificans 381 1482 1 species 1386 0 34300 Bacillus genus 1 1134 58 1 species 0 64 Bacillus gibsonii 79881 1 species 0 Bacillus pumilus 1486 1408 0 615 Bacillus endophyticus 135735 1 species species 1 632773 0 Bacillus beveridgei 606 1 species 0 569 Bacillus weihaiensis 1547283 species 1 1471 308 Bacillus methanolicus 0 species 1 1178537 371 Bacillus xiamenensis 0 species 1 561879 0 566 Bacillus safensis 1398 1162 Bacillus coagulans 0 species 1 86664 0 Bacillus flexus 315 species 1 79883 Bacillus horikoshii 580 0 species 1 1 species 0 761 Bacillus glycinifermentans 1664069 396 Bacillus aryabhattai 0 412384 1 species 0 671 Bacillus infantis 324767 1 species 1 species 242 Bacillus cellulosilyticus 0 1413 9 species group 0 6839 653685 0 Bacillus subtilis 2610 1423 1 species 1648923 Bacillus paralicheniformis 643 0 species 1 1402 Bacillus licheniformis 641 0 species 1 species subgroup 3 1938374 2014 0 0 301 Bacillus siamensis 659243 1 species 0 Bacillus amyloliquefaciens 954 1390 1 species 1 species 759 Bacillus velezensis 0 492670 1 species 0 Bacillus vallismortis 66 72361 1452 522 Bacillus atrophaeus 0 species 1 1 species 0 343 Bacillus sonorensis 119858 no rank 19 185979 4727 0 0 Bacillus sp. 1NLA3E 287 666686 1 species species 1 2026248 Bacillus sp. 1s-1 512 0 0 Bacillus sp. H15-1 512 1856406 1 species 0 40 Bacillus sp. LM 4-2 1628753 1 species species 1 2009331 0 Bacillus sp. MD-5 159 species 1 1827146 0 Bacillus sp. IHB B 7164 508 1 species Bacillus sp. X1(2014) 516 0 1565991 species 1 1409 82 Bacillus sp. (in: Bacteria) 0 0 335 Bacillus sp. FJAT-14266 1837130 1 species 1 species 0 117 Bacillus sp. YP1 1574141 1 species 129 Bacillus sp. SJ-10 0 563169 1127744 0 108 Bacillus sp. JS species 1 98228 0 Bacillus sp. OxB-1 281 species 1 species 1 1570330 0 Bacillus sp. BH072 37 species 1 2049935 54 Bacillus sp. Lzh-5 0 species 1 1774743 0 Bacillus sp. SDLI1 301 Bacillus sp. Pc3 169 0 1446792 1 species 1941347 Bacillus sp. 275 357 0 species 1 0 Bacillus sp. WP8 223 756828 1 species 1 species 322 Bacillus cohnii 0 33932 10 species group 10634 0 86661 1 species 1662 Bacillus mycoides 0 1405 1 species 0 289 Bacillus anthracis 1392 1 species Bacillus bombysepticus 263 0 658666 no rank 3 2750818 0 1104 1839798 0 427 Bacillus sp. FDAARGOS_235 species 1 2053832 0 Bacillus sp. HBCD-sjtu 341 species 1 1892404 0 336 Bacillus sp. ABP14 species 1 0 Bacillus cereus 3704 1396 1 species 1 species Bacillus cytotoxicus 338 0 580165 1 species 3076 Bacillus thuringiensis 0 1428 155322 Bacillus toyonensis 198 0 species 1 1792192 0 257 species group 1 293387 0 Bacillus altitudinis 257 species 1 0 394 Bacillus smithii 1479 1 species species 1 1404 0 Bacillus megaterium 1281 175304 338 0 genus 1 1 species 0 338 Lentibacillus amyloliquefaciens 1472767 genus 1 1055323 391 0 33936 391 Aeribacillus pallidus 0 species 1 442 0 459532 1 genus species 1 586416 442 Terribacillus aidingensis 0 genus 15 137 1 129337 Geobacillus 3390 0 4 species group 0 1020 1505648 33941 0 Geobacillus thermoleovorans 418 species 1 1 species 0 Geobacillus lituanicus 338 169283 0 108 Geobacillus kaustophilus 1462 1 species 33938 Geobacillus thermocatenulatus 156 0 species 1 1921421 Geobacillus genomosp. 3 244 0 species 1 1 species 0 197 Geobacillus subterraneus 129338 species 1 1422 286 Geobacillus stearothermophilus 0 no rank 6 2642459 1280 0 species 1 581103 0 561 Geobacillus sp. Y4.1MC1 691437 0 70 Geobacillus sp. C56-T3 species 1 1 species 65 Geobacillus sp. Y412MC61 0 544556 1 species Geobacillus sp. Y412MC52 67 0 550542 1233873 0 116 Geobacillus sp. GHH01 species 1 Geobacillus sp. WCH70 401 0 471223 1 species species 1 33940 0 226 Geobacillus thermodenitrificans 2783 Listeriaceae 0 186820 8 5 1 family 1 genus 243 0 2755 species 1 2756 Brochothrix thermosphacta 243 0 6 18 1 genus Listeria 2535 0 1637 1639 0 1303 Listeria monocytogenes species 1 Listeria seeligeri 228 0 1640 1 species 1 species 0 279 Listeria welshimeri 1643 1642 0 Listeria innocua 272 species 1 species 1 1638 435 Listeria ivanovii 0 1 10 9 family 0 Alicyclobacillaceae 2640 186823 1129704 0 749 Kyrpidia genus 19 1 3 2055160 0 Kyrpidia sp. EA-1 353 species 1 33943 377 Kyrpidia tusciae 0 species 1 genus 1 39 2 29330 0 564 Alicyclobacillus 405212 Alicyclobacillus acidocaldarius 525 0 species 1 3 1 4 genus Tumebacillus 1317 0 432330 1 species 455 Tumebacillus algifaecis 0 1214604 species 1 1903704 0 Tumebacillus avium 858 0 Paenibacillaceae 34855 186822 83 1 46 family no rank 3 85151 854 0 genus 1 1 3 55079 0 854 Aneurinibacillus species 1 1500254 411 Aneurinibacillus soli 0 1 no rank 442 0 2642329 species 1 1450761 0 Aneurinibacillus sp. XH2 442 genus 1 254 36 44249 0 Paenibacillus 31562 1 species 0 1449 Paenibacillus donghaensis 414771 162209 593 Paenibacillus naphthalenovorans 0 species 1 1 species 476 Paenibacillus yonginensis 0 1462996 species 1 1763538 0 263 Paenibacillus crassostreae species 1 189426 Paenibacillus odorifer 777 0 species 1 159743 0 Paenibacillus terrae 727 1870820 0 892 Paenibacillus ihbetae species 1 1 species Paenibacillus sabinae 684 0 365617 species 1 44251 0 Paenibacillus durus 1405 1 species 0 Paenibacillus peoriae 703 59893 Paenibacillus graminis 983 0 189425 1 species 172713 0 394 Paenibacillus kribbensis species 1 528191 0 418 Paenibacillus xylanexedens species 1 0 Paenibacillus larvae 478 1464 1 species 169760 858 Paenibacillus stellifer 0 species 1 1178515 Paenibacillus swuensis 451 0 species 1 species 1 160799 0 1373 Paenibacillus borealis 1406 0 Paenibacillus polymyxa 2127 species 1 61624 0 1672 Paenibacillus mucilaginosus species 1 1 species 741 Paenibacillus bovis 0 1616788 1126833 0 Paenibacillus beijingensis 614 species 1 no rank 13 185978 0 12035 456 Paenibacillus sp. IHBB 10380 0 1566358 1 species 1536772 1030 Paenibacillus sp. FSL R7-0273 0 species 1 1 species 0 460 Paenibacillus sp. FSL R5-0345 1536770 Paenibacillus sp. 32O-W 696 0 1695218 1 species 1 species 0 Paenibacillus sp. Y412MC10 812 481743 727 Paenibacillus sp. lzh-N1 0 2069255 1 species Paenibacillus sp. FSL H7-0737 493 0 1536775 1 species 0 Paenibacillus sp. FSL P4-0081 1678 1536769 1 species 1 species 0 Paenibacillus sp. FSL R7-0331 1153 1536773 species 1 1870819 864 Paenibacillus sp. BIHB4019 0 0 985 Paenibacillus sp. JDR-2 324057 1 species 1 species 1660 Paenibacillus sp. FSL R5-0912 0 1536771 0 1021 Paenibacillus sp. FSL H7-0357 1536774 1 species 2044880 1195 0 species group 1 Paenibacillus riograndensis 1195 0 483937 1 species 2 1 2 genus 0 Thermobacillus 932 76632 1 species 930 Thermobacillus composti 0 377615 genus 3 1 4 55080 0 1424 Brevibacillus Brevibacillus laterosporus 544 0 1465 1 species 54913 0 316 Brevibacillus formosus species 1 species 1 1393 Brevibacillus brevis 561 0 547 Sporolactobacillaceae 0 186821 2 1 1 family 0 546 663587 1 no rank 1 species 0 546 [Bacillus] selenitireducens 85683 0 3760 539002 8 no rank 7 no rank 3292 0 539742 45 1 7 genus 0 3292 Exiguobacterium 33986 2644629 2528 0 no rank 4 1 species 509 Exiguobacterium sp. U13-1 0 1849031 1 species 402 Exiguobacterium sp. MH3 0 1399115 1 species Exiguobacterium sp. AT1b 1129 0 360911 1 species 488 Exiguobacterium sp. ZWU0009 0 1224749 0 370 Exiguobacterium sibiricum 332410 1 species 132920 Exiguobacterium antarcticum 349 0 species 1 539738 0 468 no rank 1 1 genus 468 0 1378 1 no rank 0 468 2624949 0 Gemella sp. oral taxon 928 468 1785995 1 species 186818 0 8209 Planococcaceae family 36 1 26 648800 1151 Solibacillus 0 genus 3 3 1 2637870 537 0 no rank 1 2048654 Solibacillus sp. R5-41 537 0 species 1 species 1 76853 611 Solibacillus silvestris 0 1 2 5 genus 0 2281 Sporosarcina 1569 no rank 2 2647733 0 1122 1 species 0 558 Sporosarcina sp. P37 1930546 1930764 Sporosarcina sp. P33 564 0 species 1 1476 0 289 Sporosarcina psychrophila species 1 0 868 Sporosarcina ureae 1571 1 species 0 Rummeliibacillus 316 648802 1 1 2 genus species 1 241244 Rummeliibacillus stabekisii 315 0 1649 Kurthia 533 0 genus 2 1 1 no rank 1 2644826 0 532 1 species 532 Kurthia sp. 11kri321 0 1750719 157226 0 446 genus 1 1508404 0 Jeotgalibacillus malaysiensis 446 species 1 0 3446 Planococcus 1372 1 22 12 genus 1302659 Planococcus sp. L10.15 256 0 species 1 species 1 192421 0 850 Planococcus maritimus 1 species 0 229 Planococcus faecalis 1598147 species 1 200991 Planococcus rifietoensis 350 0 species 1 1215089 0 201 Planococcus halocryophilus 1374 0 Planococcus kocurii 261 species 1 161360 275 Planococcus antarcticus 0 species 1 209 Planococcus donghaensis 0 414778 1 species species 1 1038856 0 327 Planococcus plakortidis 2662419 0 466 no rank 2 species 1 1526927 0 Planococcus sp. PAMC 21323 220 1 species 0 246 Planococcus sp. MB-3u-03 2058136 41 540 1 family 14215 Staphylococcaceae 0 90964 1279 12005 Staphylococcus 0 genus 33 290 1 214473 0 343 Staphylococcus nepalensis species 1 1 species 0 Staphylococcus xylosus 636 1288 1 species 0 Staphylococcus pasteuri 492 45972 1352 Staphylococcus aureus 0 1280 1 species 0 Staphylococcus kloosii 196 29384 1 species 1 species 0 256 Staphylococcus warneri 1292 no rank 1 91994 283 0 1 species Staphylococcus sp. AntiMn-1 283 0 1715860 0 169 Staphylococcus agnetis 985762 1 species 581 Staphylococcus pseudintermedius 0 283734 1 species Staphylococcus hyicus 298 0 1284 1 species Staphylococcus equorum 519 0 246432 1 species 1 species Staphylococcus capitis 423 0 29388 1 species 0 Staphylococcus succinus 220 61015 species 1 29385 Staphylococcus saprophyticus 283 0 1286 0 Staphylococcus simulans 458 species 1 307 Staphylococcus stepanovicii 0 643214 1 species species 1 308354 297 Staphylococcus simiae 0 species 1 1296 0 Staphylococcus sciuri 342 1 species 0 Staphylococcus muscae 231 1294 species 1 1282 0 Staphylococcus epidermidis 377 Staphylococcus hominis 336 0 1290 1 species 1 species 0 222 Staphylococcus condimenti 70255 species 1 170573 0 Staphylococcus pettenkoferi 175 1 species 0 426 Staphylococcus argenteus 985002 1295 0 405 Staphylococcus schleiferi species 1 1 species 0 269 Staphylococcus cohnii 29382 0 242 Staphylococcus haemolyticus 1283 1 species species 1 46127 0 Staphylococcus felis 350 species 1 1281 0 Staphylococcus carnosus 273 1 species Staphylococcus lutrae 345 0 155085 species 1 70258 Staphylococcus piscifermentans 319 0 28035 290 Staphylococcus lugdunensis 0 species 1 2005363 0 360 genus 1 1 species 0 Auricoccus indicus 360 1849491 69965 870 Macrococcus 0 genus 4 5 1 0 Macrococcus caseolyticus 440 69966 1 species 1855823 0 198 Macrococcus canis species 1 0 227 2619255 1 no rank 1 species 0 227 Macrococcus sp. IME1552 1898474 45669 Salinicoccus 440 0 genus 2 1 2 438 Salinicoccus halodurans 0 407035 1 species family 1 1 4 186824 0 417 Thermoactinomycetaceae 0 Laceyella 71 292635 1 genus 2 14 1 genus Novibacillus 345 0 1677050 0 Novibacillus thermophilus 331 1471761 1 species class 17 1 1 1737404 Tissierellia 5754 0 1737405 Tissierellales 5414 0 order 14 51 1 1570339 4676 Peptoniphilaceae 0 family 10 729 1 165779 Anaerococcus 743 0 genus 3 3 1 1870984 Anaerococcus mediterraneensis 288 0 species 1 Anaerococcus prevotii 452 0 33034 1 species 150022 0 616 Finegoldia genus 5 1 2 1 species 0 611 Finegoldia magna 1260 genus 1 543311 0 684 species 1 33033 0 Parvimonas micra 684 genus 2 1 1 162289 477 Peptoniphilus 0 0 476 2637196 1 no rank 1 species 0 Peptoniphilus sp. ING2-D1G 476 1912856 1161127 0 1427 genus 1 1 species 0 1427 Murdochiella vaginalis 1852373 family 3 2 1 2042895 687 Gottschalkiaceae 0 Gottschalkia 685 0 1505664 2 52 1 genus 1556 Gottschalkia acidurici 633 0 species 1 0 339 1737407 2 no rank genus 2 1 1 1582879 339 Ezakiella 0 1 species 0 338 Ezakiella massiliensis 1852374 7 1 11 class 0 Erysipelotrichia 11525 526524 6 1 10 order 0 Erysipelotrichales 11518 526525 1 22 9 family 0 11512 Erysipelotrichaceae 128827 544447 7623 0 no rank 1 1834207 Erysipelotrichaceae bacterium I46 7623 0 species 1 1 4 2 genus 0 2265 Faecalibaculum 1729679 1 species 0 Faecalibaculum rodentium 2261 1702221 191303 1044 Turicibacter 0 genus 2 3 1 1041 0 2638206 1 no rank species 1 1712675 Turicibacter sp. H121 1041 0 genus 3 4 1 1647 558 Erysipelothrix 0 1648 Erysipelothrix rhusiopathiae 246 0 species 1 1514105 0 Erysipelothrix larvae 308 species 1 0 49383 Negativicutes 909932 17 1 29 class 13 1 57 order 11974 Selenomonadales 0 909929 4 1 1 family 1968 Sporomusaceae 0 1843490 3 15 1 genus Pelosinus 1967 0 365348 798 Pelosinus fermentans 0 365349 1 species no rank 1 2629460 1154 0 484770 0 1154 Pelosinus sp. UFO1 species 1 family 8 1 20 1843491 9949 Selenomonadaceae 0 8742 Selenomonas 0 970 6 1 40 genus 1 species 0 Selenomonas sputigena 1843 69823 species 1 971 0 Selenomonas ruminantium 2978 no rank 3 2637378 3881 0 1243 Selenomonas sp. oral taxon 478 0 712538 1 species 713030 0 Selenomonas sp. oral taxon 136 1754 species 1 species 1 1884263 Selenomonas sp. oral taxon 920 884 0 1 genus 1187 0 158846 species 1 158847 0 1187 Megamonas hypermegale order 10 250 1 1843489 31579 Veillonellales 0 0 Veillonellaceae 31329 31977 458 1 9 family genus 2 1 10 39948 Dialister 17204 0 17194 Dialister pneumosintes 0 39950 1 species 0 Veillonella 6015 29465 1 70 3 genus 248315 0 Veillonella rodentium 1524 species 1 species 1 29466 4421 Veillonella parvula 0 906 Megasphaera 3808 0 genus 2 13 1 907 0 3795 Megasphaera elsdenii species 1 genus 1 909928 0 3844 Negativicoccus massiliensis 3844 0 1702287 1 species 1843488 Acidaminococcales 5813 0 order 5 20 1 0 5793 Acidaminococcaceae 909930 1 14 4 family 904 0 5779 Acidaminococcus genus 1 71 3 905 0 Acidaminococcus fermentans 2766 species 1 1 species Acidaminococcus intestini 2942 0 187327 class 1 3 5 1676648 0 Limnochordia 683 1676649 Limnochordales 680 0 order 4 15 1 family 3 4 1 1676650 Limnochordaceae 665 0 2 4 1 genus Limnochorda 661 0 1676651 0 Limnochorda pilosa 657 1555112 1 species 186801 0 Clostridia 2543800 class 1 105 204 485256 0 317 order 1 family 1 485255 317 0 375928 0 317 genus 1 species 1 375929 0 Natranaerobius thermophilus 317 3932 1 156 order 0 Clostridiales 2529925 186802 family 2 216572 0 8150 17 1 2 genus 0 Oscillibacter 8150 459786 1 species Oscillibacter valericigenes 8133 0 351091 11 family 0 16801 2304686 2304693 0 1139 genus 1 species 1 84032 [Clostridium] thermosuccinogenes 1139 0 genus 3 2304692 3204 0 Ruminiclostridium thermocellum 1297 0 1515 1 species 1 species 0 [Clostridium] clariflavum 1281 288965 1677857 0 Herbivorax saccincola 626 species 1 1 no rank 8092 0 2305130 species 1 1834198 8092 Ruminiclostridium sp. KB18 0 1119 0 1637257 1 genus 1 species 0 1119 Mageeibacillus indolicus 884684 236752 0 745 Fastidiosipila genus 1 3 2 236753 742 Fastidiosipila sanguinis 0 species 1 68 1 2 genus 0 Ruminiclostridium 1627 1508657 1 species 1559 [Clostridium] cellulolyticum 0 1521 875 0 2304691 1 genus 1 species 0 [Clostridium] stercorarium 875 1510 1 291 13 family 0 1449175 Ruminococcaceae 541000 1 no rank 0 2448 2305133 1 species 0 2448 Ruminococcaceae bacterium CPB6 1572656 1890281 Herbivorax 1 0 genus 1 253238 Ethanoligenens 3467 0 genus 2 1 10 Ethanoligenens harbinense 3457 0 253239 1 species genus 267 1 2 216851 0 1285719 Faecalibacterium 1285452 Faecalibacterium prausnitzii 0 853 1 species 0 149230 Flavonifractor 946234 36 1 2 genus 1 species 0 149194 Flavonifractor plautii 292800 552397 0 999 no rank 1 29343 0 [Clostridium] cellulosi 999 species 1 1263 0 7020 Ruminococcus genus 1 8 3 1 species Ruminococcus albus 2516 0 1264 1 species Ruminococcus bicirculans 4496 0 1160721 family 3 9 1 31984 Heliobacteriaceae 1114 0 genus 2 2 1 2697 1105 Heliobacterium 0 Heliobacterium modesticaldum 1103 0 35701 1 species 50799 Clostridiaceae 0 31979 41 212 1 family 30 1 205 genus 46919 Clostridium 0 1485 0 Clostridium perfringens 2079 1502 1 species 238834 0 827 Clostridium estertheticum species 1 1 species 0 1245 Clostridium kluyveri 1534 0 Clostridium argentinense 886 29341 1 species 1 species 874 Clostridium ljungdahlii 0 1538 2 no rank 10841 0 2614128 1 species 0 Clostridium sp. BNL1100 1292 755731 Clostridium sp. SY8519 9549 0 1042156 1 species 217159 Clostridium carboxidivorans 1158 0 species 1 1 species 0 Clostridium botulinum 5678 1491 1 species Clostridium tetani 1366 0 1513 1 species 0 2239 Clostridium beijerinckii 1520 species 1 1519 0 Clostridium tyrobutyricum 918 0 1119 Clostridium cellulovorans 1493 1 species species 1 1542 Clostridium novyi 554 0 1492 Clostridium butyricum 1763 0 species 1 1 species 0 Clostridium baratii 1381 1561 species 1 394958 0 952 Clostridium taeniosporum 1488 0 Clostridium acetobutylicum 797 species 1 species 1 169679 0 1465 Clostridium saccharobutylicum species 1 1509 Clostridium sporogenes 790 0 1 species Clostridium autoethanogenum 1194 0 84023 46867 0 753 Clostridium chauvoei species 1 596 Clostridium cochlearium 0 1494 1 species 1 species 580 Clostridium formicaceticum 0 1497 1 species 0 1825 Clostridium saccharoperbutylacetonicum 36745 1 species Clostridium pasteurianum 1889 0 1501 1548 1282 Clostridium scatologenes 0 species 1 species 1 1216932 0 904 Clostridium bornimense 0 759 Clostridium aceticum 84022 1 species 1981033 0 Mordavella 61 genus 1 0 1475 Geosporobacter 390805 1 2 2 genus 1424294 0 1473 Geosporobacter ferrireducens species 1 4 1 6 genus Candidatus Arthromitus 963 0 49082 3 no rank 0 957 2638829 species 1 1041504 0 Candidatus Arthromitus sp. SFB-rat-Yit 374 0 Candidatus Arthromitus sp. SFB-mouse-NL 285 1508644 1 species 49118 298 Candidatus Arthromitus sp. SFB-mouse 0 species 1 3 2 1 genus Alkaliphilus 1169 0 114627 Alkaliphilus oremlandii 369 0 461876 1 species 798 Alkaliphilus metalliredigens 0 208226 1 species 5 4 1 family Eubacteriaceae 7584 0 186806 Eubacterium 6760 0 1730 2 1 74 genus 6686 Eubacterium limosum 0 1736 1 species genus 2 1 3 33951 820 Acetobacterium 0 1 species Acetobacterium woodii 817 0 33952 1 143 3 family 0 Christensenellaceae 7894 990719 1 168 2 genus 0 Christensenella 7751 990721 species 1 1805714 7583 Christensenella massiliensis 0 1 3 3 family 0 1079 Symbiobacteriaceae 543349 genus 4 1 2 2733 0 1076 Symbiobacterium species 1 2734 Symbiobacterium thermophilum 1072 0 family 27 77 1 186807 14881 Peptococcaceae 0 genus 1 2282742 0 1061 0 Desulfotomaculum acetoxidans 1061 58138 1 species 2 3 1 genus 861 Thermincola 0 278993 863643 0 858 Thermincola potens species 1 579 0 51196 1 genus species 1 51197 0 Syntrophobotulus glycolicus 579 5 1 11 genus 2288 Desulfotomaculum 0 1562 1 species Desulfotomaculum reducens 345 0 59610 1 species 0 460 Desulfotomaculum nigrificans 1565 Desulfotomaculum ferrireducens 701 0 1833852 1 species 0 771 Desulfotomaculum ruminis 1564 1 species 0 483 471826 1 genus 471827 483 Candidatus Desulforudis audaxviator 0 species 1 2638 Dehalobacter 0 56112 4 51 1 genus 2635733 0 1757 no rank 2 1 species Dehalobacter sp. DCA 838 0 1147129 1131462 0 Dehalobacter sp. CF 919 species 1 0 830 Dehalobacter restrictus 55583 1 species genus 4 9 1 79206 Desulfosporosinus 1803 0 1563 Desulfosporosinus orientis 552 0 species 1 885581 Desulfosporosinus acidiphilus 789 0 species 1 species 1 79209 0 453 Desulfosporosinus meridiei genus 2 1 2 51514 Dehalobacterium 1164 0 1 species Dehalobacterium formicoaceticum 1162 0 51515 2282740 669 0 genus 1 species 1 102134 Desulfotomaculum gibsoniae 669 0 0 3258 Desulfitobacterium 36853 30 1 5 genus species 1 36854 738 Desulfitobacterium dehalogenans 0 1 species 530 Desulfitobacterium metallireducens 0 142877 555 Desulfitobacterium dichloroeliminans 0 233055 1 species species 1 49338 0 Desulfitobacterium hafniense 1405 68298 0 852 family 2 556 0 862 1 genus species 1 863 0 Syntrophomonas wolfei 556 0 296 129001 1 genus 1 species 0 Syntrophothermus lipocalidus 296 86170 0 89548 538999 9 no rank genus 1 2717089 0 62602 0 Mordavella sp. Marseille-P3756 62602 2086584 1 species 539000 739 0 family 2 2 1 1 genus Thermaerobacter 739 0 73918 73919 0 738 Thermaerobacter marianensis species 1 family 1 5 4 543314 0 1352 Clostridiales Family XIII. Incertae Sedis genus 1 8 2 86331 0 Mogibacterium 663 1 species 0 655 Mogibacterium diversum 114527 143393 0 [Eubacterium] sulci 684 species 1 0 Intestinimonas 24855 1392389 163 1 2 genus 0 Intestinimonas butyriciproducens 24692 1297617 1 species 186804 Peptostreptococcaceae 43907 0 family 10 469 1 Filifactor 854 0 44259 2 1 4 genus Filifactor alocis 850 0 143361 1 species 789 Peptoclostridium 0 1481960 2 1 1 genus 0 788 Peptoclostridium acidaminophilum 1731 1 species genus 1 186831 671 0 1511 0 671 Acetoanaerobium sticklandii species 1 1870884 Clostridioides 39912 0 genus 2 153 1 0 39759 Clostridioides difficile 1496 1 species 1 genus 0 762 1849828 1 species 0 Paeniclostridium sordellii 762 1505 450 0 1411023 1 no rank 1 species 0 450 Peptostreptococcaceae bacterium oral taxon 929 2081703 26 1 527 family Lachnospiraceae 834209 0 186803 410945 Roseburia 0 841 2 1 8 genus 0 410937 Roseburia hominis 301301 1 species genus 4 1 3 830 0 Butyrivibrio 8060 43305 4343 Butyrivibrio proteoclasticus 0 species 1 1 species 0 3713 Butyrivibrio hungatei 185008 207244 0 52942 Anaerostipes genus 1 137 2 1 species 0 52805 Anaerostipes hadrus 649756 Blautia 42046 0 572511 3 29 1 genus 1 species 26611 Blautia hansenii 0 1322 1 no rank 15406 0 2648079 1 species 0 Blautia sp. YL58 15406 1796616 28050 22763 0 genus 1 39485 22763 [Eubacterium] eligens 0 species 1 1 1 2 genus 0 1866 Cellulosilyticum 698776 Cellulosilyticum lentocellum 1865 0 29360 1 species 1 genus 0 11592 2719231 84030 [Clostridium] saccharolyticum 11592 0 species 1 2422 0 1663717 1 genus 1679721 0 Herbinix luporum 2422 species 1 genus 4 1 103 1506553 Lachnoclostridium 62769 0 0 21402 Lachnoclostridium phocaeense 1871021 1 species Lachnoclostridium phytofermentans 3907 0 66219 1 species 1 no rank 0 37357 2608895 1834196 37357 Lachnoclostridium sp. YL32 0 species 1 1 genus 86722 0 2719313 species 1 208479 86722 [Clostridium] bolteae 0 genus 2 6 1 2039240 Anaerotignum 1332 0 species 1 28446 1326 Anaerotignum propionicum 0 2 no rank 61887 0 186928 species 1 39491 0 [Eubacterium] rectale 55692 1 species 6195 Lachnospiraceae bacterium oral taxon 500 0 712991 2569097 0 68336 genus 1 1 species 0 [Eubacterium] hallii 68336 39488 53433 2020 0 order 9 972 0 Halanaerobiaceae 1001 family 3 1 5 genus 2 2330 643 0 2331 0 326 Halanaerobium praevalens species 1 1 species 0 Halanaerobium hydrogeniformans 317 656519 32636 355 Halothermothrix 0 genus 2 1 1 species 1 31909 0 354 Halothermothrix orenii 2 1 4 family 0 1019 Halobacteroidaceae 53434 1 genus 0 444 42417 42422 444 Halobacteroides halobius 0 species 1 0 573 Acetohalobium 28186 1 1 2 genus 1 species Acetohalobium arabaticum 572 0 28187 0 10305 Thermoanaerobacterales 68295 13 1 35 order 1 family 0 128 227387 1 genus 128 0 227388 species 1 184064 128 Thermodesulfobium narugense 0 3 2 1 family Thermoanaerobacterales Family IV. Incertae Sedis 384 0 543372 252965 Mahella 382 0 genus 2 2 1 252966 0 Mahella australiensis 380 species 1 18 1 13 family 0 5150 Thermoanaerobacterales Family III. Incertae Sedis 543371 44000 3442 Caldicellulosiruptor 0 genus 9 1 38 1 species 0 390 Caldicellulosiruptor bescii 31899 species 1 52765 0 634 Caldicellulosiruptor kristjanssonii 1 species 0 Caldicellulosiruptor lactoaceticus 645 52766 species 1 413888 0 Caldicellulosiruptor hydrothermalis 274 Caldicellulosiruptor obsidiansis 312 0 717609 1 species 0 Caldicellulosiruptor kronotskyensis 431 413889 1 species 0 387 Caldicellulosiruptor owensensis 55205 1 species 44001 331 Caldicellulosiruptor saccharolyticus 0 species 1 28895 1690 Thermoanaerobacterium 0 genus 3 1 1 0 559 Thermoanaerobacterium xylanolyticum 29329 1 species 1517 Thermoanaerobacterium thermosaccharolyticum 1130 0 species 1 10 1 17 family 0 4630 Thermoanaerobacteraceae 186814 129957 348 0 genus 1 129958 Carboxydothermus hydrogenoformans 348 0 species 1 genus 85 1 9 1754 0 Thermoanaerobacter 2659 0 Thermoanaerobacter kivui 289 2325 1 species Thermoanaerobacter pseudethanolicus 376 0 496866 1 species 654 0 2636821 2 no rank 573062 285 Thermoanaerobacter sp. X513 0 species 1 1 species Thermoanaerobacter sp. X514 369 0 399726 328 Thermoanaerobacter italicus 0 108150 1 species 1 species 0 291 Thermoanaerobacter mathranii 583357 species 1 46354 260 Thermoanaerobacter wiegelii 0 1 species 0 376 Thermoanaerobacter brockii 29323 0 Thermacetogenium 439 140458 1 5 2 genus 85874 0 Thermacetogenium phaeum 434 species 1 674 0 42857 2 no rank 44260 459 0 genus 1 1 species Moorella thermoacetica 459 0 1525 genus 1 42837 215 0 species 1 42838 215 Ammonifex degensii 0 249529 Caldanaerobacter 500 0 genus 2 1 1 species 1 911092 499 Caldanaerobacter subterraneus 0 2 order 0 1128 2770089 437 0 2770093 1 family 1 genus 0 437 291988 291990 0 437 Thermosediminibacter oceani species 1 family 1 2770092 0 691 genus 1 499228 0 691 499229 0 Tepidanaerobacter acetatoxydans 691 species 1 no rank 1 84086 445 0 0 445 endosymbiont 'TC1' of Trimyema compressum 243899 1 species 0 10150827 1783270 344 clade 0 635 65842 3 phylum 3 class 635 0 204430 1 1 3 order 0 635 Fibrobacterales 218872 0 634 Fibrobacteraceae 204431 1 1 2 family 1 genus 0 633 832 833 633 Fibrobacter succinogenes 0 species 1 1 phylum 269 0 456828 genus 1 456826 269 0 species 1 456827 0 Candidatus Cloacimonas acidaminovorans 269 332 clade 10148700 0 68336 304 13 1 phylum Bacteroidetes 10142250 0 976 Chitinophagia 7266 0 1853228 15 1 12 class 14 1 8 order 7254 Chitinophagales 0 1853229 563835 0 Chitinophagaceae 7246 family 9 1 13 1769012 0 465 genus 1 2636138 465 0 no rank 1 1850526 0 465 Arachidicoccus sp. BS20 species 1 3 1 6 genus 1398 Niabella 0 379899 species 1 446683 602 Niabella soli 0 1176587 0 790 Niabella ginsenosidivorans species 1 398041 0 565 Flavisolibacter genus 1 1 2 0 Flavisolibacter tropicus 564 1492898 1 species 1 genus 0 1057 354354 species 1 354356 Niastella koreensis 1057 0 2386 Chitinophaga 0 79328 3 1 1 genus 1 species 0 1655 Chitinophaga pinensis 79329 0 Chitinophagaceae bacterium 13 730 2029983 1 species 0 Filimonas 1366 649460 6 1 2 genus 477680 0 Filimonas lacunae 1360 species 1 class 69 1 51 768503 0 28807 Cytophagia order 50 1 74 768507 28738 Cytophagales 0 family 8 4 1 563798 3177 Cyclobacteriaceae 0 68288 0 Cyclobacterium 1449 genus 2 1 3 1 species Cyclobacterium amurskyense 696 0 320787 0 Cyclobacterium marinum 751 104 1 species 246875 393 0 genus 1 species 1 1727163 0 393 Algoriphagus sp. M8-2 genus 2 2 1 390846 Echinicola 728 0 0 726 Echinicola vietnamensis 390884 1 species 1 genus 603 0 232244 232259 Belliella baltica 603 0 species 1 family 16 1 16 1853232 Hymenobacteraceae 13900 0 323449 0 Pontibacter 1807 genus 1 1 3 species 1 400092 Pontibacter korlensis 1042 0 764 Pontibacter akesuensis 0 388950 1 species 1379908 0 2182 Rufibacter genus 1 5 4 512763 747 Rufibacter tibetensis 0 species 1 2639626 0 1430 no rank 2 species 1 1379910 655 Rufibacter sp. DG31D 0 1379909 775 Rufibacter sp. DG15C 0 species 1 Hymenobacter 9895 0 89966 8 1 24 genus 5 no rank 0 6578 2615202 1385664 0 984 Hymenobacter sp. DG25B species 1 1 species 0 1551 Hymenobacter sp. APR13 1356852 1 species Hymenobacter sp. DG25A 821 0 1385663 species 1 1484116 0 Hymenobacter sp. PAMC 26554 1496 1484118 1726 Hymenobacter sp. PAMC 26628 0 species 1 1446467 Hymenobacter swuensis 1690 0 species 1 species 1 1411621 0 Hymenobacter sedentarius 1603 family 3 1 3 1853234 0 Persicobacteraceae 937 1 2 2 genus 0 Persicobacter 934 59740 932 0 2664020 1 no rank species 1 1085624 932 Persicobacter sp. JZB09 0 1 70 15 family 0 Cytophagaceae 7849 89373 3799 Spirosoma 0 107 6 1 5 genus species 1 1379870 664 Spirosoma radiotolerans 0 564064 Spirosoma rigui 716 0 species 1 species 1 1178516 Spirosoma montaniterrae 789 0 species 1 2057025 1003 Spirosoma sp. HA7 0 species 1 1211326 0 622 Spirosoma aerolatum genus 1 1 2 319458 0 Leadbetterella 560 0 559 Leadbetterella byssophila 316068 1 species 1136 Runella 0 105 2 1 1 genus species 1 106 0 Runella slithyformis 1135 1 genus 0 709 978 985 0 Cytophaga hutchinsonii 709 species 1 1 genus 0 913 120831 0 913 Dyadobacter fermentans 94254 1 species genus 2 1 1 861914 Fibrella 662 0 no rank 1 2620963 661 0 species 1 1834519 0 Fibrella sp. ES10-3-2-2 661 200667 1803 0 family 2 genus 1 59739 730 0 no rank 1 2637820 0 730 0 730 Flammeovirga sp. MY04 1191459 1 species 1 no rank 1073 0 340671 0 Flammeovirgaceae bacterium 311 1073 1257021 1 species 201 0 1501348 2 family genus 1 273135 0 90 2641185 0 90 no rank 1 1 species Cardinium endosymbiont of Encarsia pergandiella 90 0 249402 281119 0 111 genus 1 281120 Candidatus Amoebophilus asiaticus 111 0 species 1 2762301 363 0 family 2 0 Marivirga 363 869806 5 1 2 genus 358 Marivirga tractuosa 0 1006 1 species 1937968 0 434 family 1 1 genus 0 434 1937972 999 434 Bernardetia litoralis 0 species 1 200643 0 9994818 Bacteroidia class 106 1 66 0 9991235 Bacteroidales 171549 385 1 58 order 1 1 3 family 0 1829 Paludibacteraceae 2005523 346096 0 1828 Paludibacter genus 3 1 2 1 species Paludibacter propionicigenes 1825 0 185300 2005519 88115 Barnesiellaceae 0 family 3 4 1 0 88111 Barnesiella 397864 1 6 2 genus species 1 397865 88105 Barnesiella viscericola 0 1 49 11 family 0 Bacteroidaceae 4957483 815 0 4957434 Bacteroides 816 45602 1 10 genus species 1 817 0 Bacteroides fragilis 403981 28116 2478889 Bacteroides ovatus 0 species 1 1 species 0 Bacteroides zoogleoformans 97478 28119 0 Bacteroides helcogenes 153568 290053 1 species 1 species 0 616576 Bacteroides cellulosilyticus 246787 1796613 427514 Bacteroides caecimuris 0 species 1 28113 114229 Bacteroides heparinolyticus 0 species 1 0 Bacteroides caccae 284836 47678 1 species species 1 818 Bacteroides thetaiotaomicron 334761 0 2005520 0 13467 family 5 294702 Proteiniphilum 7794 0 genus 2 1 8 1 species 7786 Proteiniphilum saccharofermentans 0 1642647 genus 1 1784836 2627 0 2627 Fermentimonas caenicola 0 1562970 1 species 0 Petrimonas 3046 307628 1 5 2 genus species 1 1642646 0 Petrimonas mucosa 3041 3 3 1 family Odoribacteraceae 102670 0 1853231 102667 Odoribacter 0 283168 2 1 1 genus 28118 102666 Odoribacter splanchnicus 0 species 1 171550 Rikenellaceae 218920 0 family 4 1 11 1155 0 1611681 1 genus species 1 1433126 0 Mucinivorans hirudinis 1155 0 217754 Alistipes 239759 17 1 2 genus species 1 214856 0 217737 Alistipes finegoldii no rank 1 185291 948 0 1400053 0 948 Bacteroidales bacterium CF species 1 Porphyromonadaceae 5937 0 171551 4 5 1 family genus 3 1 9 836 5932 Porphyromonas 0 5137 Porphyromonas gingivalis 0 837 1 species 1 species 0 Porphyromonas asaccharolytica 786 28123 5 1 11 family 0 142656 Prevotellaceae 171552 genus 10 62 1 838 Prevotella 142651 0 no rank 1 2638335 0 695 0 695 Prevotella sp. oral taxon 299 652716 1 species 0 8488 Prevotella dentalis 52227 1 species 1 species Prevotella jejuni 2503 0 1177574 115466 Prevotella intermedia 0 28131 1 species 0 4064 Prevotella ruminicola 839 1 species 589436 2227 Prevotella fusca 0 species 1 species 1 76123 Prevotella enoeca 2316 0 1 species 0 3228 Prevotella denticola 28129 28132 0 Prevotella melaninogenica 3602 species 1 3914637 0 333046 5 no rank 909656 3914269 0 genus 3 species 1 376805 Bacteroides salanitronis 101777 0 Bacteroides dorei 511267 0 357276 1 species 1 species Bacteroides vulgatus 3301225 0 821 511434 0 368 Candidatus Azobacteroides genus 1 5 2 species 1 511435 Candidatus Azobacteroides pseudotrichonymphae 363 0 19 1 7 family 0 544188 Tannerellaceae 2005525 genus 3 47 1 195950 16586 Tannerella 0 1 no rank 0 4690 2620507 species 1 712710 4690 Tannerella sp. oral taxon HOT-286 0 0 11849 Tannerella forsythia 28112 1 species 527583 Parabacteroides 0 375288 3 37 1 genus no rank 1 2649774 0 349981 2025876 349981 Parabacteroides sp. CT06 0 species 1 0 177565 Parabacteroides distasonis 823 1 species 1970189 0 Marinilabiliales 3477 order 1 3 7 family 2 1 2 1471398 0 1557 Prolixibacteraceae genus 1 1471399 1555 0 species 1 1168034 Draconibacterium orientale 1555 0 family 1 1573805 849 0 1 genus 0 849 2060722 1717717 Marinifilaceae bacterium SPP2 849 0 species 1 family 1 1970190 0 332 1 genus 332 0 1970191 1307839 0 Salinivirga cyanobacteriivorans 332 species 1 1 1 2 family 0 736 Marinilabiliaceae 558415 1193324 0 735 genus 1 species 1 889453 0 Alkalitalea saponilacus 735 order 11 1 6 1100069 0 Bacteroidetes Order II. Incertae sedis 2685 0 Rhodothermaceae 2674 563843 20 1 5 family 1 no rank 967 0 1196022 1779382 0 Rhodothermaceae bacterium RA 967 species 1 2 1 2 genus 0 Rhodothermus 1140 29548 29549 Rhodothermus marinus 1138 0 species 1 1 genus 547 0 146918 0 547 Salinibacter ruber 146919 1 species class 39 1 136 117743 0 Flavobacteriia 93983 0 93944 Flavobacteriales 200644 25 1 135 order 1755828 103 0 family 1 1 genus 0 103 1755829 species 1 242600 103 Ichthyobacterium seriolicida 0 131 0 313602 2 no rank 336809 0 44 genus 1 1 species 44 Candidatus Sulcia muelleri 0 336810 1 genus 0 87 1940138 0 87 Candidatus Walczuchella monophlebidarum 1415657 1 species 2762318 0 38715 family 20 1 genus 0 1159 34084 34085 0 1159 Riemerella anatipestifer species 1 219 0 1013 1 genus species 1 1014 0 Weeksella virosa 219 308865 0 5795 Elizabethkingia genus 14 1 6 species 1 1117645 0 2012 Elizabethkingia anophelis 172045 Elizabethkingia miricola 1630 0 species 1 0 Elizabethkingia genomosp. 3 888 1756149 1 species species 1 1756150 539 Elizabethkingia genomosp. 4 0 1 species 0 Elizabethkingia meningoseptica 712 238 2 5 1 genus 21262 Ornithobacterium 0 28250 0 21257 Ornithobacterium rhinotracheale 28251 1 species 10 no rank 0 10280 2782232 genus 9 1 31 59732 Chryseobacterium 6472 0 0 1108 Chryseobacterium indologenes 253 1 species 558152 Chryseobacterium piperi 583 0 species 1 species 1 1685010 0 Chryseobacterium glaciei 738 1324352 Chryseobacterium gallinarum 913 0 species 1 1 species 0 Chryseobacterium camelliae 885 1265445 0 2214 2593645 3 no rank species 1 2015076 934 Chryseobacterium sp. T16E-39 0 1 species Chryseobacterium sp. StRB126 385 0 878220 895 Chryseobacterium sp. IHB B 17019 0 1721091 1 species 2782228 0 3808 genus 1 0 3808 Chryseobacterium taklimakanense 536441 1 species 1333713 530 0 family 2 genus 2 1 1 267986 530 Owenweeksia 0 1 species Owenweeksia hongkongensis 529 0 253245 1 385 98 family 0 Flavobacteriaceae 53313 49546 618 0 83612 1 genus species 1 57029 618 Psychroflexus torquis 0 336276 0 655 genus 1 1 no rank 0 655 2615019 species 1 2058135 655 Olleya sp. Bg11-27 0 292691 0 2410 genus 4 species 1 1486245 409 Gramella flava 0 1 species 0 Gramella sp. SH35 625 2126553 species 1 411153 843 Gramella forsetii 0 1913577 Gramella sp. LPB0144 533 0 species 1 1209327 773 0 genus 1 1 species 0 Flavivirga eckloniae 773 1803846 153265 0 211 genus 1 101385 Aequorivita sublithincola 211 0 species 1 291183 0 1364 Lacinutrix genus 1 11 4 1 species Lacinutrix venerupis 351 0 1486034 no rank 2 2647285 0 1002 1 species 274 Lacinutrix sp. 5H-3-7-4 0 983544 0 Lacinutrix sp. Bg11-31 728 2057808 1 species 15 25 1 genus Capnocytophaga 14429 0 1016 1019 Capnocytophaga sputigena 1036 0 species 1 species 1 28188 0 639 Capnocytophaga canimorsus 0 Capnocytophaga gingivalis 370 1017 1 species 1 species 0 Capnocytophaga stomatis 507 1848904 28189 361 Capnocytophaga cynodegmi 0 species 1 327575 0 Capnocytophaga leadbetteri 4282 species 1 0 6415 2640652 6 no rank 1 species 354 Capnocytophaga sp. H2931 0 1945657 species 1 1705617 641 Capnocytophaga sp. oral taxon 323 0 209053 679 Capnocytophaga sp. ChDC OS43 0 species 1 1 species 858 Capnocytophaga sp. oral taxon 864 0 1316593 1 species 0 Capnocytophaga sp. H4358 387 1945658 1 species 0 Capnocytophaga sp. oral taxon 878 3496 1316596 45243 0 388 Capnocytophaga haemolytica species 1 species 1 1018 0 Capnocytophaga ochracea 406 61432 826 0 no rank 2 0 350 Flavobacteriaceae bacterium UJ101 1150389 1 species species 1 531844 476 Flavobacteriaceae bacterium 3519-10 0 genus 1 1518147 0 369 1790137 369 Wenyingzhuangia fucanilytica 0 species 1 1649495 0 747 genus 1 1 no rank 747 0 2622645 species 1 1936081 0 747 Seonamhaeicola sp. S2-3 2702 0 104264 3 genus 76594 0 Cellulophaga baltica 1117 species 1 59600 1102 Cellulophaga algicola 0 species 1 979 0 Cellulophaga lytica 483 species 1 237 4941 Flavobacterium 0 genus 9 1 4 159 Flavobacterium crassostreae 0 1763534 1 species 55197 0 436 Flavobacterium branchiophilum species 1 Flavobacterium psychrophilum 291 0 96345 1 species 1 species 0 Flavobacterium gilvum 771 1492737 1306519 Flavobacterium commune 553 0 species 1 996 0 817 Flavobacterium columnare species 1 Flavobacterium johnsoniae 1610 0 986 1 species species 1 312277 Flavobacterium indicum 300 0 216431 0 207 genus 1 species 1 313588 0 207 Croceibacter atlanticus genus 4 1 1 326319 598 Dokdonia 0 no rank 2 2615033 0 410 1 species 0 203 Dokdonia sp. 4H-3-7-5 983548 313590 0 207 Dokdonia sp. MED134 species 1 species 1 326320 187 Dokdonia donghaensis 0 51 1 5 genus 0 Maribacter 1550 252356 0 Maribacter cobaltidurans 428 1178778 1 species 1071 0 2615042 3 no rank 1644130 0 442 Maribacter sp. 1_2014MBL_MicDiv species 1 1 species 0 Maribacter sp. HTCC2170 267 313603 1 species 0 Maribacter sp. T28 362 1836467 genus 1 2700084 0 696 1 species 696 Lutibacter sp. LPB0138 0 1850246 5 3 1 genus Tenacibaculum 1527 0 104267 472 Tenacibaculum jejuense 0 584609 1 species 107401 0 390 Tenacibaculum maritimum species 1 1 species 0 387 Tenacibaculum dicentrarchi 669041 species 1 1850252 0 275 Tenacibaculum todarodis 545 Robiginitalea 0 252306 2 2 1 genus 252307 543 Robiginitalea biformata 0 species 1 2 genus 0 450 286104 2 no rank 450 0 2615021 1936080 Winogradskyella sp. J14-2 242 0 species 1 754409 0 Winogradskyella sp. PG-2 208 species 1 0 6498 Myroides 76831 36 1 5 genus 480520 0 248 Myroides profundi species 1 2642485 0 881 no rank 2 species 1 1458492 0 468 Myroides sp. ZB35 Myroides sp. A21 413 0 1583100 1 species 76832 5333 Myroides odoratimimus 0 species 1 1 genus 0 139 1176327 0 139 2636237 1 no rank 0 139 Aureitalea sp. RR4-38 2094025 1 species 1 1 2 genus 0 480 Salegentibacter 143222 2633436 479 0 no rank 1 1729720 Salegentibacter sp. T436 479 0 species 1 178469 0 390 genus 1 Arenibacter algicola 390 0 616991 1 species 1 genus 0 610 1204360 species 1 762954 Siansivirga zeaxanthinifaciens 610 0 0 1577 Nonlabens 363408 1 5 5 genus 1 species 990 Nonlabens dokdonensis 0 328515 319236 0 Nonlabens sediminis 143 species 1 2 no rank 0 439 2615035 species 1 2058134 232 Nonlabens sp. MB-3u-79 0 1476901 207 Nonlabens sp. MIC269 0 species 1 0 Sediminicola 191 389486 1 1 2 genus no rank 1 2648869 190 0 species 1 1453352 Sediminicola sp. YIK13 190 0 3 1 1 genus Formosa 340 0 225842 2644710 339 0 no rank 2 1 species 219 Formosa sp. Hel1_33_131 0 1336794 1336795 Formosa sp. Hel3_A1_48 120 0 species 1 358023 1217 0 genus 1 1622118 Lutibacter profundi 1217 0 species 1 111500 Muricauda 1058 0 genus 3 1 4 species 1 111501 0 Muricauda ruestringensis 626 1 species 428 Muricauda lutaonensis 0 516051 393005 0 285 genus 1 1 species 0 Tamlana sp. UJ94 285 2069432 658 0 417127 1 genus 398743 658 Zunongwangia profunda 0 species 1 112040 0 671 genus 1 1 species 0 671 Zobellia galactanivorans 63186 261827 0 303 genus 1 1736674 303 Algibacter alginicilyticus 0 species 1 52959 2893 Polaribacter 0 genus 6 1 3 196858 1323 0 no rank 3 2058137 0 482 Polaribacter sp. ALD11 species 1 0 281 Polaribacter sp. BM10 1529069 1 species 313598 0 Polaribacter sp. MED152 560 species 1 0 Polaribacter reichenbachii 739 996801 1 species species 1 1774273 0 828 Polaribacter vadi 0 473 1853230 2 family genus 2 1 1 332102 Fluviicola 473 0 191579 472 Fluviicola taffensis 0 species 1 0 654 39782 9 family 34098 0 654 Blattabacterium genus 1 2 9 no rank 6 2647581 441 0 0 54 Blattabacterium sp. (Blatta orientalis) 367806 1 species 1 species 0 Blattabacterium sp. (Blattella germanica) 99 624186 1 species 0 60 Blattabacterium sp. (Mastotermes darwiniensis) 39768 92 Blattabacterium sp. (Periplaneta americana) 0 367488 1 species 0 75 Blattabacterium sp. (Nauphoeta cinerea) 1316444 1 species species 1 1186051 Blattabacterium sp. (Blaberus giganteus) 61 0 1 species 102 Blattabacterium punctulatus 0 164514 1653831 Blattabacterium cuenoti 109 0 species 1 class 6 1 1 1937959 Saprospiria 1706 0 0 1705 Saprospirales 1936988 1 2 5 order 89374 368 0 family 2 genus 2 1 3 1007 Saprospira 368 0 365 Saprospira grandis 0 1008 1 species 1937961 1335 Haliscomenobacteraceae 0 family 2 1 3 1 genus 0 1332 2349 1 species 0 Haliscomenobacter hydrossis 1332 2350 117747 12972 Sphingobacteriia 0 class 23 1 3 0 12969 Sphingobacteriales 200666 22 1 22 order 84566 12947 Sphingobacteriaceae 0 family 21 16 1 Mucilaginibacter 2221 0 423349 4 3 1 genus 1 species 0 Mucilaginibacter gotjawali 751 1550579 2617802 976 0 no rank 1 species 1 1300914 0 976 Mucilaginibacter sp. PAMC 26640 1234841 0 491 Mucilaginibacter sp. BJC16-A31 species 1 929509 0 Solitalea 744 genus 2 1 2 995 742 Solitalea canadensis 0 species 1 genus 1 7 6 84567 0 3744 Pedobacter species 1 363852 Pedobacter ginsengisoli 755 0 Pedobacter cryoconitis 422 0 188932 1 species 1 species 900 Pedobacter steynii 0 430522 2628915 0 915 no rank 1 915 Pedobacter sp. PACM 27299 0 1727164 1 species 0 745 Pedobacter heparinus 984 1 species 871 0 84568 1 no rank species 1 1986952 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 871 893 0 1649482 1 genus 151895 0 893 Pseudopedobacter saltans species 1 genus 6 1 15 28453 Sphingobacterium 4458 0 1010 0 853 Sphingobacterium mizutaii species 1 no rank 4 2609468 0 3590 743722 0 Sphingobacterium sp. 21 1143 species 1 1 species 921 Sphingobacterium sp. B29 0 1933220 2003121 Sphingobacterium sp. G1-14 825 0 species 1 0 701 Sphingobacterium sp. ML3W 1538644 1 species 1090 5653 0 phylum 21 21 1 57 class 5653 Chlorobia 0 191410 136 1 20 order 0 5596 Chlorobiales 191411 family 19 38 1 191412 Chlorobiaceae 5460 0 0 1467 Chlorobaculum 256319 6 1 4 genus 274539 0 445 Chlorobaculum parvum species 1 1 species 0 Chlorobaculum tepidum 421 1097 1 species 595 Chlorobaculum limnaeum 0 274537 7 no rank 2623 0 274493 genus 5 1 4 1091 Chlorobium 1607 0 1 species 0 734 Chlorobium phaeobacteroides 1096 178 Chlorobium chlorochromatii 0 337090 1 species 0 Chlorobium phaeovibrioides 207 1094 1 species species 1 1092 Chlorobium limicola 484 0 1099 1016 0 genus 2 Pelodictyon phaeoclathratiforme 375 0 34090 1 species species 1 1100 Pelodictyon luteolum 641 0 1101 Prosthecochloris 955 0 genus 5 1 1 2632826 651 0 no rank 3 281093 372 Prosthecochloris sp. GSB1 0 species 1 1974213 0 124 Prosthecochloris sp. HL-130-GSB species 1 0 155 Prosthecochloris sp. CIB 2401 1868325 1 species 1 species 0 303 Prosthecochloris aestuarii 1102 377 Chloroherpeton 0 100715 2 1 13 genus species 1 100716 0 Chloroherpeton thalassium 364 797 0 1134404 7 phylum class 7 1 1 795747 797 Ignavibacteria 0 order 6 1 1 795748 Ignavibacteriales 796 0 0 361 795749 2 family 2 1 2 genus 361 Ignavibacterium 0 795750 Ignavibacterium album 359 0 591197 1 species family 3 1 1 1334117 434 Melioribacteraceae 0 genus 2 1 13 1134403 Melioribacter 433 0 1 species 0 Melioribacter roseus 420 1134405 142182 0 1223 phylum 8 8 5 1 class Gemmatimonadetes 1223 0 219685 order 7 30 1 219686 1218 Gemmatimonadales 0 219687 1188 Gemmatimonadaceae 0 family 6 5 1 3 2 1 genus Gemmatimonas 633 0 173479 0 Gemmatimonas aurantiaca 325 173480 1 species 1 species 0 306 Gemmatimonas phototrophica 1379270 genus 2 1 2 1706036 Gemmatirosa 550 0 861299 548 Gemmatirosa kalamazoonesis 0 species 1 4 phylum 0 750 200940 4 class 750 0 67799 750 0 188710 4 order 750 0 188711 4 family genus 2 1740 0 511 1 species 0 Thermodesulfobacterium geofontis 448 1295609 1 species Thermodesulfobacterium commune 63 0 1741 1 genus 127 0 444090 species 1 1653476 Caldimicrobium thiodismutans 127 0 112 0 241192 1 genus 171695 0 Thermodesulfatator indicus 112 species 1 phylum 3 68297 336 0 203486 0 336 class 3 203487 336 0 order 3 336 Dictyoglomaceae 0 203488 3 1 1 family genus 2 13 0 335 513050 0 Dictyoglomus turgidum 155 species 1 14 0 180 Dictyoglomus thermophilum species 1 508458 0 2332 phylum 9 0 2332 Synergistia 649775 1 5 9 class 1 1 8 order 0 2327 Synergistales 649776 649777 0 Synergistaceae 2326 family 1 14 7 1 genus 0 256 336260 1 species Thermovirga lienii 256 0 336261 81461 155 0 genus 1 155 Thermanaerovibrio acidaminovorans 0 81462 1 species 0 175 81466 1 genus 1 species 0 Aminobacterium colombiense 175 81468 508459 1641 Cloacibacillus 0 genus 2 2 1 1 species 1639 Cloacibacillus porcorum 0 1197717 0 85 49894 1 genus 0 85 Acetomicrobium mobile 97477 1 species 40117 2777 0 phylum 13 0 Nitrospira 2777 203693 8 1 13 class order 6 1 12 189778 0 2769 Nitrospirales 9 1 11 family 0 2763 Nitrospiraceae 189779 1 genus 262 0 28261 1 species Thermodesulfovibrio yellowstonii 262 0 28262 genus 5 1 37 1234 Nitrospira 1962 0 1 species 497 Candidatus Nitrospira inopinata 0 1715989 species 1 330214 190 Nitrospira defluvii 0 42253 Nitrospira moscoviensis 625 0 species 1 species 1 1325564 Nitrospira japonica 613 0 179 Leptospirillum 530 0 genus 4 1 1 655606 0 147 species group 1 1 species 147 Leptospirillum ferrooxidans 0 180 208 0 261386 1 species group 0 208 Leptospirillum ferriphilum 178606 1 species species group 1 261385 174 0 species 1 1660083 Leptospirillum sp. Group II 'CF-1' 174 0 clade 75 1783257 18276 0 134625 307 0 phylum 4 4 1 1 class 307 Kiritimatiellae 0 1921781 306 0 1921782 3 order 0 Kiritimatiellaceae 306 1921783 1 1 3 family 2 39 1 genus 305 Kiritimatiella 0 1921784 1307763 0 266 Kiritimatiella glycovorans species 1 27 phylum 6491 0 203682 30 1 19 class 0 Planctomycetia 4294 203683 1 order 273 0 2691355 273 0 1914233 1 family 113 0 273 genus 1 no rank 1 2622970 273 0 0 273 Gemmata sp. SH-PL17 1630693 1 species 0 2111 Planctomycetales 112 27 1 9 order Planctomycetaceae 2084 0 126 8 13 1 family 0 Planctopirus 367 1649480 1 1 2 genus 1 species Planctopirus limnophila 366 0 120 genus 1 1936111 387 0 1 species 387 Fuerstia marisgermanicae 0 1891926 genus 1 1649490 0 256 species 1 119 256 Rubinisphaera brasiliensis 0 3 1 5 genus Planctomyces 1061 0 118 0 1056 2648843 2 no rank 1636152 0 621 Planctomyces sp. SH-PL62 species 1 species 1 1632864 0 435 Planctomyces sp. SH-PL14 2691356 1321 0 order 5 5 family 1321 0 1763524 Paludisphaera 733 0 1763521 2 7 1 genus 1387353 0 726 Paludisphaera borealis species 1 1 genus 0 204 127 0 204 Isosphaera pallida 128 1 species 0 384 Singulisphaera 466152 6 1 2 genus species 1 466153 Singulisphaera acidiphila 378 0 order 3 2691354 559 0 2691357 0 367 family 2 123 238 0 genus 1 125 0 238 Pirellula staleyi species 1 0 129 265488 1 genus species 1 265606 129 Rhodopirellula baltica 0 family 1 2691358 192 0 1676125 0 192 genus 1 1331910 0 192 Thermogutta terrifontis species 1 class 5 4 1 666505 Phycisphaerae 1934 0 2483366 0 1582 order 2 family 2 2483367 1582 0 genus 2 2483368 0 1582 1 species Phycisphaerae bacterium ST-PulAB-D4 759 0 1941349 0 823 Phycisphaerae bacterium L21-RPul-D3 1940790 1 species 348 Phycisphaerales 0 666506 2 8 1 order 1 family 0 340 666507 0 340 666508 1 genus 340 Phycisphaera mikurensis 0 547188 1 species 2517206 0 263 class 3 1127829 263 Candidatus Brocadiales 0 order 3 8 1 255 0 1127830 2 family genus 1 1 2 380738 0 255 Candidatus Kuenenia 254 Candidatus Kuenenia stuttgartiensis 0 174633 1 species 3541 0 256845 3 phylum 0 Lentisphaeria 3541 1313211 6 1 3 class order 2 1156 1 278082 3535 Victivallales 0 1 no rank 0 2379 1674876 species 1 2094242 Victivallales bacterium CCUG 44730 2379 0 23 1 3 phylum Verrucomicrobia 6894 0 74201 1 class 36 0 134549 1 genus 36 0 134550 1 no rank 36 0 2648876 0 36 Candidatus Xiphinematobacter sp. Idaho Grape 1704307 1 species 11 1 39 class Opitutae 2005 0 414999 4 2 1 order 199 Puniceicoccales 0 415001 0 197 Puniceicoccaceae 415002 4 1 3 family 0 Coraliomargarita 193 442430 1 1 2 genus 395922 0 192 Coraliomargarita akajimensis species 1 Opitutales 1767 0 415000 6 14 1 order 9 1 5 family 0 1753 Opitutaceae 134623 178440 396 Opitutus 0 genus 2 1 1 species 1 107709 0 Opitutus terrae 395 1 no rank 697 0 278955 1 species 0 Opitutaceae bacterium TAV5 697 794903 genus 1 1961799 0 651 1838286 0 Lacunisphaera limnophila 651 species 1 2 no rank 0 868 417295 species 1 1637999 243 Verrucomicrobia bacterium IMCC26134 0 2026799 Verrucomicrobia bacterium 625 0 species 1 3 class 278 0 1955630 order 3 717963 0 278 717964 278 0 family 3 511745 0 278 Methylacidiphilum genus 1 1 3 0 193 Methylacidiphilum infernorum 511746 1 species 591154 0 84 Methylacidiphilum fumariolicum species 1 3704 Verrucomicrobiae 0 203494 5 22 1 class 48461 0 3682 Verrucomicrobiales order 1 22 4 0 3660 1647988 3 family 0 Akkermansia 3660 239934 1 1 3 genus 0 1257 Akkermansia glycaniphila 1679444 1 species 1 species 0 2402 Akkermansia muciniphila 239935 phylum 18 204428 0 1043 18 10 1 class 1043 Chlamydiia 0 204429 order 1 1 13 51291 0 Chlamydiales 476 475 0 809 12 family no rank 12 1113537 475 0 810 475 Chlamydia 0 genus 12 11 1 species 1 83558 0 18 Chlamydia pneumoniae 1 species 43 Chlamydia gallinacea 0 1457153 1 species 0 24 Chlamydia caviae 83557 83560 29 Chlamydia muridarum 0 species 1 813 Chlamydia trachomatis 18 0 species 1 83554 0 101 Chlamydia psittaci species 1 1 species 0 26 Chlamydia avium 1457141 85991 0 Chlamydia pecorum 75 species 1 30 Chlamydia suis 0 83559 1 species 83556 Chlamydia felis 80 0 species 1 1 species 20 Chlamydia abortus 0 83555 557 0 1963360 4 order 1 family 0 85 92712 0 85 34093 1 genus 0 Simkania negevensis 85 83561 1 species 2 family 0 306 92713 282132 0 200 genus 1 0 Candidatus Protochlamydia naegleriophila 200 389348 1 species genus 1 83551 0 106 1 species Parachlamydia acanthamoebae 106 0 83552 166 0 92714 1 family genus 1 71666 166 0 species 1 71667 0 166 Waddlia chondrophila 32066 0 12501 phylum 24 0 Fusobacteriia 12501 203490 12 1 24 class order 1 14 23 203491 0 12489 Fusobacteriales 0 Fusobacteriaceae 9331 203492 2 1 12 family 848 Fusobacterium 8876 0 genus 9 13 1 Fusobacterium ulcerans 554 0 861 1 species 444 Fusobacterium necrophorum 0 859 1 species 1 species Fusobacterium varium 1721 0 856 species 1 849 0 347 Fusobacterium gonidiaformans 1 species 0 Fusobacterium hwasookii 715 1583098 species 1 860 0 1886 Fusobacterium periodonticum species 1 851 2692 Fusobacterium nucleatum 0 1 species Fusobacterium mortiferum 504 0 850 453 Ilyobacter 0 167639 2 1 1 genus 0 Ilyobacter polytropus 452 167642 1 species 1129771 0 3144 Leptotrichiaceae family 5 1 10 0 1866 Leptotrichia 32067 3 1 5 genus 2633022 1367 0 no rank 3 species 1 1785996 0 Leptotrichia sp. oral taxon 847 358 1 species 0 Leptotrichia sp. oral taxon 498 398 712368 712357 0 Leptotrichia sp. oral taxon 212 611 species 1 0 Leptotrichia buccalis 496 40542 1 species 34104 0 285 genus 1 Streptobacillus moniliformis 285 0 34105 1 species 1 1 2 genus 0 Sneathia 276 168808 species 1 187101 0 Sneathia amnii 275 genus 1 32068 0 712 826 0 Sebaldella termitidis 712 species 1 20618 0 2157 236 superkingdom 1783276 24 0 clade 1 phylum 1 1801631 0 24 1 genus 24 0 2490204 species 1 1920749 0 Candidatus Micrarchaeota archaeon Mia14 24 1783275 1992 0 clade 44 2 0 51967 1 phylum 1 genus 0 2 498845 species 1 498846 2 Candidatus Korarchaeum cryptofilum 0 34 phylum 0 1521 28889 183924 1521 0 class 34 2266 Thermoproteales 375 0 order 13 1 5 114378 0 225 family 4 2268 225 0 genus 4 species 1 1483572 0 105 Thermofilum carboxyditrophus 1 species 106 Thermofilum adornatus 0 1365176 0 Thermofilum pendens 7 2269 1 species species 1 1550241 Thermofilum uzonense 7 0 family 8 2 1 2267 Thermoproteaceae 145 0 164450 58 Vulcanisaeta 0 genus 3 1 2 985052 47 Vulcanisaeta moutnovskia 0 species 1 1 species 0 9 Vulcanisaeta distributa 164451 2270 37 0 genus 2 184117 0 8 Thermoproteus uzoniensis species 1 2271 0 29 Thermoproteus tenax species 1 genus 1 2276 15 0 1 species 0 15 Pyrobaculum islandicum 2277 1 genus 0 33 76886 species 1 76887 Caldivirga maquilingensis 33 0 2281 0 749 order 8 8 family 749 0 118883 2284 479 0 genus 3 no rank 1 2641160 115 0 1891280 0 Sulfolobus sp. A20 115 species 1 43080 0 293 Sulfolobus islandicus species 1 Sulfolobus acidocaldarius 71 0 2285 1 species 12914 0 30 genus 1 species 1 563177 0 30 Acidianus hospitalis 0 103 69655 1 genus species 1 111955 0 Sulfolobus tokodaii 103 2 genus 0 98 41980 species 1 43687 Metallosphaera sedula 53 0 1006005 0 45 Metallosphaera cuprina species 1 2100760 0 39 genus 1 0 Sulfolobus solfataricus 39 2287 1 species 0 303 114380 11 order 8 family 0 226 2272 1 genus 25 0 54253 species 1 54254 25 Thermosphaera aggregans 0 1 genus 4 0 477695 1 species 0 Thermogladius calderae 4 1200300 2279 63 0 genus 2 species 1 2280 29 Staphylothermus marinus 0 species 1 84599 0 34 Staphylothermus hellenicus 54258 0 43 genus 2 species 1 160233 0 Ignicoccus hospitalis 32 54259 Ignicoccus islandicus 11 0 species 1 91 0 2273 2 genus species 1 94694 Desulfurococcus amylolyticus 43 0 1 species 0 48 Desulfurococcus mucosus 2275 family 3 2307 0 77 0 21 54251 1 genus species 1 54252 21 Pyrolobus fumarii 0 genus 1 54247 6 0 Hyperthermus butylicus 6 0 54248 1 species genus 1 2308 50 0 1273541 0 Pyrodictium delaneyi 50 species 1 871006 94 0 order 2 871007 41 0 family 1 1 genus 0 41 105850 41 Acidilobus saccharovorans 0 242703 1 species 1 family 53 0 255472 1 genus 53 0 200414 species 1 200415 0 53 Caldisphaera lagunensis 9 phylum 469 0 651137 0 126 651142 3 no rank 1593364 0 43 genus 1 1410606 0 43 Candidatus Nitrosopelagicus brevis species 1 genus 2 1825023 0 83 1603555 0 63 Candidatus Nitrosotenuis cloacae species 1 1 species Candidatus Nitrosotenuis sp. AQ6f 20 0 1846278 3 order 0 144 31932 3 family 144 0 338190 0 41 1993653 1 genus 0 41 Candidatus Nitrosomarinus catalina 1898749 1 species genus 2 338191 0 103 1 species 68 Candidatus Nitrosopumilus adriaticus 0 1580092 1229909 0 35 Candidatus Nitrosopumilus sediminis species 1 3 class 0 199 1643678 order 1 1 2 1033996 0 174 Nitrososphaerales family 1 1033997 173 0 genus 1 497726 0 173 species 1 1034015 Nitrososphaera viennensis 173 0 1968909 25 0 order 1 1968910 25 0 family 1 0 25 498374 1 genus 2045011 0 25 Candidatus Nitrosocaldus islandicus species 1 18602 0 28890 191 phylum 3503 0 2283794 32 clade 2086 0 183925 20 class 0 2086 2158 20 order 0 1847 2159 19 family 126 0 145260 4 genus 16 Methanothermobacter wolfeii 0 145261 1 species 41 Methanothermobacter marburgensis 0 145263 1 species 2631116 0 47 no rank 1 866790 0 47 Methanothermobacter sp. CaT2 species 1 Methanothermobacter thermautotrophicus 22 0 145262 1 species 0 738 2160 7 genus Methanobacterium subterraneum 158 0 59277 1 species species 1 868131 106 Methanobacterium paludis 0 1 species 0 Methanobacterium lacus 91 877455 0 Methanobacterium formicicum 73 2162 1 species 118062 85 Methanobacterium congolense 0 species 1 0 225 2627676 2 no rank 1379702 0 98 Methanobacterium sp. MB1 species 1 1911685 Methanobacterium sp. MZ-A1 127 0 species 1 1 1 7 genus 0 853 Methanobrevibacter 2172 83816 Methanobrevibacter ruminantium 161 0 species 1 no rank 2 2638681 221 0 species 1 1609968 0 114 Methanobrevibacter sp. YE315 species 1 224719 0 Methanobrevibacter sp. AbM4 107 1 species 0 204 Methanobrevibacter smithii 2173 0 136 Methanobrevibacter olleyae 294671 1 species 0 Methanobrevibacter millerae 130 230361 1 species 1 genus 130 0 2316 2317 130 Methanosphaera stadtmanae 0 species 1 1 family 0 239 2178 0 239 2179 1 genus 239 Methanothermus fervidus 0 2180 1 species 12 class 1417 0 183939 2182 1417 0 order 12 0 815 2183 5 family 0 77 155862 1 genus 0 Methanothermococcus okinawensis 77 155863 1 species 4 genus 0 738 2184 1 species 28 Methanococcus voltae 0 2188 1 species 566 Methanococcus maripaludis 0 39152 Methanococcus aeolicus 67 0 42879 1 species 1 species Methanococcus vannielii 77 0 2187 602 0 196117 7 family 196118 0 559 genus 6 0 54 2641196 1 no rank species 1 644281 Methanocaldococcus sp. FS406-22 54 0 73913 Methanocaldococcus vulcanius 81 0 species 1 species 1 1301915 143 Methanocaldococcus bathoardescens 0 1 species 0 73 Methanocaldococcus infernus 67760 1 species 0 98 Methanocaldococcus fervens 83171 2190 0 110 Methanocaldococcus jannaschii species 1 196119 0 43 genus 1 1 species 0 43 Methanotorris igneus 2189 39 3 1 class 1983 Thermococci 0 183968 order 38 2258 0 1980 family 38 1 5 2259 1980 Thermococcaceae 0 478 0 2260 7 genus species 1 53953 Pyrococcus horikoshii 107 0 114 Pyrococcus furiosus 0 2261 1 species 37 Pyrococcus yayanosii 0 1008460 1 species species 1 29292 0 26 Pyrococcus abyssi 1 species 0 122 Pyrococcus kukulkanii 1609559 no rank 2 2629106 0 72 48 Pyrococcus sp. ST04 0 1183377 1 species 24 Pyrococcus sp. NA2 0 342949 1 species genus 1 83867 23 0 0 23 Palaeococcus pacificus 971279 1 species Thermococcus 1474 0 2263 29 1 5 genus 82 Thermococcus barophilus 0 55802 1 species 1 species 0 Thermococcus pacificus 48 71998 34 Thermococcus guaymasensis 0 110164 1 species 0 Thermococcus siculi 24 72803 1 species 1 species 0 Thermococcus radiotolerans 34 187880 172049 0 Thermococcus sibiricus 100 species 1 species 1 277988 0 70 Thermococcus thioreducens 54262 72 Thermococcus chitonophagus 0 species 1 1 species 0 52 Thermococcus profundus 49899 1 species 0 29 Thermococcus eurythermalis 1505907 species 1 71997 0 57 Thermococcus gorgonarius 1 species 0 69 Thermococcus onnurineus 342948 73 Thermococcus barossii 0 54077 1 species species 1 311400 0 Thermococcus kodakarensis 71 1712654 35 Thermococcus piezophilus 0 species 1 Thermococcus celer 29 0 2264 1 species 57 Thermococcus nautili 0 195522 1 species 1 species 0 46 Thermococcus peptonophilus 53952 2627626 0 312 no rank 6 species 1 122420 Thermococcus sp. P6 11 0 species 1 246969 0 121 Thermococcus sp. AM4 Thermococcus sp. 5-4 37 0 2008440 1 species 1 species Thermococcus sp. 4557 43 0 1042877 1 species Thermococcus sp. EXT12c 47 0 2016361 species 1 1674923 0 Thermococcus sp. 2319x1 53 1 species 0 Thermococcus gammatolerans 57 187878 1 species Thermococcus litoralis 58 0 2265 163003 0 Thermococcus cleftensis 27 species 1 0 33 Thermococcus paralvinellae 582419 1 species 2283796 0 1350 clade 15 class 23 1 13 183967 0 1255 Thermoplasmata 0 285 1235850 4 order 0 110 2517203 1 family 1 genus 0 110 1291539 1291540 0 110 Candidatus Methanomethylophilus alvus species 1 family 3 1 1 1577788 Methanomassiliicoccaceae 175 0 genus 1 1080709 87 0 87 Candidatus Methanomassiliicoccus intestinalis 0 1406512 1 species 87 0 1607807 1 genus 1577791 Candidatus Methanoplasma termitum 87 0 species 1 7 order 0 723 2301 1 family 178 0 46630 genus 1 46631 178 0 Picrophilus torridus 178 0 82076 1 species family 2 46659 66 0 2302 66 0 genus 2 2303 22 Thermoplasma acidophilum 0 species 1 0 Thermoplasma volcanium 44 50339 1 species no rank 1 1919231 230 0 species 1 1054217 0 Thermoplasmatales archaeon BRNA1 230 0 42 1747776 1 family 0 42 1747777 1 genus 1673428 0 Cuniculiplasma divulgatum 42 species 1 207 0 90142 2 family 2 genus 207 0 74968 97393 Ferroplasma acidarmanus 127 0 species 1 1 species 0 Ferroplasma acidiphilum 80 74969 0 224 1234666 1 no rank species 1 1495144 0 224 methanogenic archaeon ISO4-H5 clade 2 1803510 95 0 genus 2 379546 0 95 2633939 0 48 no rank 1 species 1 673860 0 Aciduliprofundum sp. MAR08-339 48 379547 47 Aciduliprofundum boonei 0 species 1 class 7 183980 0 632 order 7 2231 0 632 632 0 2232 7 family 1 genus 123 0 54260 54261 Ferroglobus placidus 123 0 species 1 190818 0 167 genus 2 species 1 565033 Geoglobus acetivorans 117 0 50 Geoglobus ahangari 0 113653 1 species 2233 342 0 genus 4 96 Archaeoglobus veneficus 0 58290 1 species species 1 1316941 0 87 Archaeoglobus sulfaticallidus species 1 2234 Archaeoglobus fulgidus 122 0 species 1 84156 37 Archaeoglobus profundus 0 98 clade 11134 0 2290931 class 44 7 1 224756 Methanomicrobia 6124 0 order 26 1 5 94695 Methanosarcinales 4484 0 family 22 3 1 2206 4100 Methanosarcinaceae 0 2225 147 0 genus 2 29291 0 90 Methanococcoides burtonii species 1 57 Methanococcoides methylutens 0 2226 1 species 0 109 2220 1 genus 420950 109 Methanolobus psychrophilus 0 species 1 1 genus 171 0 196136 species 1 39669 0 Methanosalsum zhilinae 171 101191 192 0 genus 1 1 species 0 192 Methanomethylovorans hollandica 101192 2 genus 346 0 2175 2176 0 Methanohalophilus mahii 162 species 1 species 1 2177 0 Methanohalophilus halophilus 184 13 7 1 genus Methanosarcina 2948 0 2207 species 1 2214 267 Methanosarcina acetivorans 0 species 1 2215 Methanosarcina vacuolata 188 0 0 Methanosarcina barkeri 754 2208 1 species 2210 Methanosarcina thermophila 107 0 species 1 species 1 2209 0 242 Methanosarcina mazei species 1 38027 0 Methanosarcina siciliae 404 0 705 2644672 4 no rank 1434100 143 Methanosarcina sp. MTP4 0 species 1 1434102 0 97 Methanosarcina sp. WH1 species 1 species 1 1434099 Methanosarcina sp. Kolksee 278 0 0 187 Methanosarcina sp. WWM596 1434103 1 species 1 species 0 190 Methanosarcina horonobensis 418008 Methanosarcina lacustris 84 0 170861 1 species genus 1 2321 184 0 1 species 184 Methanohalobium evestigatum 0 2322 379 Methanosaetaceae 0 143067 3 31 1 family 2 genus 0 348 2222 1 species Methanothrix soehngenii 192 0 2223 301375 Methanosaeta harundinacea 156 0 species 1 4 9 1 order 241 Methanocellales 0 570264 3 1 2 family Methanocellaceae 232 0 570265 230 0 570266 2 genus species 1 1175445 0 Methanocella arvoryzae 200 30 Methanocella conradii 0 1175444 1 species 0 Methanomicrobiales 1392 2191 1 1 13 order family 1 88404 114 0 2192 114 0 genus 1 1 species 114 Methanocorpusculum labreanum 0 83984 family 1 1 5 1198451 0 438 Methanoregulaceae 0 Methanoregula 316 395331 20 1 3 genus 0 Methanoregula boonei 77 358766 1 species species 1 882104 Methanoregula formicica 219 0 121 0 475087 1 genus 475088 Methanosphaerula palustris 121 0 species 1 0 134 196137 1 family 1 genus 0 134 2202 2203 0 Methanospirillum hungatei 134 species 1 family 5 2194 705 0 1 1 4 genus 0 Methanoculleus 627 45989 0 151 Methanoculleus marisnigri 2198 1 species 83986 0 Methanoculleus bourgensis 329 species 1 0 146 2619537 1 no rank species 1 86622 0 146 Methanoculleus sp. MAB1 230355 78 0 genus 1 1 species Methanolacinia petrolearia 78 0 54120 54 1 58 class Halobacteria 5010 0 183963 6 1 17 order 0 1763 Natrialbales 1644060 family 1 8 16 1644061 0 1757 Natrialbaceae 0 242 Halostagnicola 353799 2 1 2 genus 1 species 0 240 Halostagnicola larsenii 353800 6 1 3 genus 0 Natrinema 268 88723 1 no rank 131 0 2622230 species 1 406552 Natrinema sp. J7-2 131 0 species 1 69525 0 131 Natrinema pellirubrum 1 1 2 genus 0 Halobiforma 154 203193 1 species 0 Halobiforma lacisalsi 153 229731 2256 57 0 genus 1 species 1 44930 57 Natronobacterium gregoryi 0 0 173 63742 1 genus Natrialba magadii 173 0 13769 1 species 115 Natronococcus 0 29287 2 5 1 genus 1 species 0 110 Natronococcus occultus 29288 2 genus 0 339 121871 0 Haloterrigena turkmenica 279 62320 1 species 588898 60 Haloterrigena daqingensis 0 species 1 1 genus 103 0 1269201 2621923 0 103 no rank 1 1333523 0 103 Salinarchaeum sp. Harcht-Bsk1 species 1 0 298 387342 1 genus Halopiger xanaduensis 298 0 387343 1 species order 13 1 13 1644055 0 1358 Haloferacales 468 Halorubraceae 0 1963271 6 1 1 family 1 genus 61 0 1209988 1 species 61 Halopenitus persicus 0 1048396 1644057 270 0 genus 1 1 species 270 Salinigranum rubrum 0 755307 56688 0 136 Halorubrum genus 4 1 3 84 Halorubrum trapanicum 0 29284 1 species 1 species 0 Halorubrum lacusprofundi 48 2247 5 family 0 649 1644056 0 71 293431 1 genus 293091 Haloquadratum walsbyi 71 0 species 1 genus 1 60846 0 49 60847 49 Halogeometricum borinquense 0 species 1 genus 3 2251 529 0 35746 163 Haloferax gibbonsii 0 species 1 2252 Haloferax mediterranei 149 0 species 1 species 1 2246 0 217 Haloferax volcanii no rank 1 2678336 228 0 228 halophilic archaeon DL31 0 756883 1 species 1831 Halobacteriales 0 2235 23 1 38 order 2236 0 Halobacteriaceae 589 family 2 1 8 2239 0 Halobacterium 401 genus 1 2 4 1 species 0 Halobacterium salinarum 134 2242 2668073 110 0 no rank 1 species 1 751944 0 110 Halobacterium sp. DL1 1 species 0 155 Halobacterium hubeiense 1407499 332246 79 0 genus 1 0 Halalkalicoccus jeotgali 79 413810 1 species 1656823 72 0 genus 1 1604004 Halanaeroarchaeum sulfurireducens 72 0 species 1 genus 1 1980514 0 35 species 1 1873524 35 Halodesulfurarchaeum formicicum 0 family 1 9 14 1963268 0 1204 Haloarculaceae 5 1 1 genus Haloarcula 383 0 2237 1932004 0 120 Haloarcula taiwanensis species 1 2624677 73 0 no rank 1 0 73 Haloarcula sp. CBA1115 1592728 1 species 1 species 98 Haloarcula marismortui 0 2238 0 91 Haloarcula hispanica 51589 1 species genus 2 146825 330 0 1 species 238 Halorhabdus utahensis 0 146826 species 1 430914 92 Halorhabdus tiamatea 0 2 1 3 genus 0 Natronomonas 108 63743 1 species 57 Natronomonas pharaonis 0 2257 species 1 416273 0 49 Natronomonas moolapensis 0 156 Halorientalis 1073987 1 6 2 genus 1 no rank 150 0 2648975 1 species 0 150 Halorientalis sp. IM1011 1932360 218 0 203135 1 genus 0 218 Halomicrobium mukohataei 57705 1 species name 1 0 0