members magnitude magnitudeUnassigned count unassigned taxon rank score 1778_72759.report 12631521 4164 29 739374 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xAcidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 0 superkingdom 119362 2157 232 1783275 47 0 clade 4009 51967 1 8 0 phylum 1 498845 genus 0 8 1 498846 Candidatus Korarchaeum cryptofilum 8 species 0 10 651137 phylum 0 67 4 1643678 53 class 0 2 1033996 29 order 0 2 1033997 29 family 0 genus 0 1 29 1 Nitrososphaera 2 497726 species 0 28 Nitrososphaera viennensis 1 1034015 2 1968909 24 order 0 Candidatus Nitrosocaldaceae 1 2 1968910 family 1 0 24 498374 1 23 0 genus 23 0 species 2045011 1 Candidatus Nitrosocaldus islandicus 651142 3 8 0 no rank 6 0 genus 1593364 1 6 0 species 1410606 1 Candidatus Nitrosopelagicus brevis genus 0 2 2 1825023 1846278 1 Candidatus Nitrosotenuis sp. AQ6f 1 0 species Candidatus Nitrosotenuis cloacae 1603555 1 0 species 1 31932 3 0 order 6 338190 3 0 family 6 1993653 1 0 genus 2 Candidatus Nitrosomarinus catalina 1 1898749 species 0 2 2 338191 4 genus 0 1580092 1 Candidatus Nitrosopumilus adriaticus 2 0 species 1 1229909 Candidatus Nitrosopumilus sediminis 2 species 0 3934 0 phylum 28889 36 36 183924 class 0 3934 33 0 order 871006 4 Acidilobaceae 1 3 871007 family 0 1 29 1 Acidilobus 105850 2 0 1 genus 28 Acidilobus saccharovorans 1 242703 species 0 27 255472 1 4 0 family 4 genus 0 1 200414 Caldisphaera lagunensis 1 200415 species 0 4 14 114380 Desulfurococcales 1 1587 order 1 0 5 2307 1565 family 0 1 54251 570 genus 0 species 0 570 Pyrolobus fumarii 1 54252 0 1 genus 992 4 Pyrodictium 2308 2 Pyrodictium delaneyi 1273541 1 0 species 988 3 1 0 genus 54247 2 1 Hyperthermus 0 species 2 Hyperthermus butylicus 54248 1 8 2272 Desulfurococcaceae 1 21 family 1 0 9 0 genus 477695 1 species 0 9 Thermogladius calderae 1 1200300 2 2273 genus 0 5 Desulfurococcus amylolyticus 1 94694 species 0 2 0 species 3 Desulfurococcus mucosus 2275 1 0 genus 4 54258 2 Ignicoccus hospitalis 1 160233 species 0 1 Ignicoccus islandicus 1 54259 species 0 3 2279 2 2 0 genus 0 species 1 Staphylothermus marinus 2280 1 84599 1 Staphylothermus hellenicus 1 0 species 0 order 426 2281 7 7 118883 426 family 0 41980 2 0 genus 399 1 43687 Metallosphaera sedula 1 species 0 Metallosphaera cuprina 1 1006005 species 0 398 1 69655 2 genus 0 species 0 2 Sulfolobus tokodaii 1 111955 0 genus 15 2284 2 1 2641160 7 no rank 0 7 0 species 1891280 1 Sulfolobus sp. A20 Sulfolobus islandicus 1 43080 species 0 8 6 genus 0 1 2100760 0 species 6 Sulfolobus solfataricus 2287 1 4 0 genus 12914 1 species 0 4 Acidianus hospitalis 1 563177 11 2266 3 Thermoproteales 1888 order 0 1 family 0 1833 6 2267 164450 2 210 0 genus species 0 209 Vulcanisaeta moutnovskia 1 985052 Vulcanisaeta distributa 164451 1 0 species 1 genus 0 1142 1 2276 2277 1 Pyrobaculum islandicum 1142 0 species 76886 1 0 genus 7 0 species 7 Caldivirga maquilingensis 76887 1 474 0 genus 2270 2 1 2271 Thermoproteus tenax 16 species 0 184117 1 Thermoproteus uzoniensis 458 0 species 4 114378 family 0 52 52 0 genus 2268 4 Thermofilum adornatus 1 1365176 species 0 3 species 0 2 Thermofilum carboxyditrophus 1 1483572 44 species 0 1 2269 Thermofilum pendens 0 species 3 Thermofilum uzonense 1550241 1 1783276 1 7 0 clade 1 1801631 7 phylum 0 genus 0 7 1 2490204 species 0 7 Candidatus Micrarchaeota archaeon Mia14 1 1920749 184 28890 phylum 0 115346 31 2283794 clade 0 24503 0 class 54 183939 11 2182 11 54 0 order family 0 23 7 196117 1 196119 3 genus 0 Methanotorris igneus 1 2189 species 0 3 1 Methanocaldococcus 6 196118 genus 1 0 20 species 0 5 Methanocaldococcus vulcanius 1 73913 no rank 0 1 1 2641196 Methanocaldococcus sp. FS406-22 1 644281 species 0 1 Methanocaldococcus jannaschii 2190 1 0 species 3 1301915 1 Methanocaldococcus bathoardescens 9 0 species species 0 1 Methanocaldococcus infernus 1 67760 4 2183 31 family 0 genus 0 2 1 155862 Methanothermococcus okinawensis 1 155863 species 0 2 3 2184 genus 0 29 Methanococcus aeolicus 1 42879 species 0 17 Methanococcus vannielii 1 2187 species 0 5 Methanococcus maripaludis 1 39152 species 0 7 class 0 24449 20 183925 24449 0 order 2158 20 family 0 24443 19 2159 4 145260 48 genus 0 9 0 species 145262 1 Methanothermobacter thermautotrophicus 24 species 0 1 145261 Methanothermobacter wolfeii 1 2631116 no rank 0 9 Methanothermobacter sp. CaT2 866790 1 0 species 9 0 species 6 Methanothermobacter marburgensis 145263 1 2160 8 Methanobacterium 3 20476 0 1 genus 868131 1 Methanobacterium paludis 3913 0 species 1 118062 Methanobacterium congolense 4905 species 0 2 2627676 no rank 0 620 Methanobacterium sp. MZ-A1 1 1911685 species 0 549 Methanobacterium sp. MB1 1 1379702 species 0 71 65 species 0 1 2162 Methanobacterium formicicum Methanobacterium lacus 1 877455 species 0 10420 550 species 0 1 59277 Methanobacterium subterraneum 2152 genus 0 6 2172 2 2638681 no rank 0 439 1609968 1 Methanobrevibacter sp. YE315 436 0 species 1 224719 Methanobrevibacter sp. AbM4 3 species 0 41 species 0 1 230361 Methanobrevibacter millerae 1661 0 species 294671 1 Methanobrevibacter olleyae species 0 9 Methanobrevibacter smithii 1 2173 Methanobrevibacter ruminantium 83816 1 0 species 2 genus 0 1767 1 2316 Methanosphaera stadtmanae 1 2317 species 0 1767 6 family 0 1 2178 6 0 genus 2179 1 6 0 species 2180 1 Methanothermus fervidus 3285 0 clade 2283796 14 183967 12 3015 0 class 1235850 4 Methanomassiliicoccales 1 2256 0 1 order family 0 1976 2 1577788 1080709 1 0 genus 1974 1 1406512 Candidatus Methanomassiliicoccus intestinalis 1974 species 0 1 1607807 genus 0 2 species 0 2 Candidatus Methanoplasma termitum 1 1577791 279 family 0 1 2517203 1 1291539 279 genus 0 Candidatus Methanomethylophilus alvus 1 1291540 species 0 279 1234666 1 21 0 no rank 1 1495144 methanogenic archaeon ISO4-H5 21 species 0 7 2301 order 0 738 0 family 4 1747776 1 1 1747777 genus 0 4 4 species 0 1 1673428 Cuniculiplasma divulgatum 46630 1 0 family 3 genus 0 3 1 46631 3 0 species 82076 1 Picrophilus torridus 22 no rank 0 1 1919231 1 1054217 Thermoplasmatales archaeon BRNA1 22 species 0 13 family 0 2 90142 13 genus 0 2 74968 Ferroplasma acidarmanus 97393 1 0 species 1 12 0 species 74969 1 Ferroplasma acidiphilum 696 family 0 2 46659 2 2302 696 genus 0 species 0 424 Thermoplasma acidophilum 1 2303 Thermoplasma volcanium 50339 1 0 species 272 0 clade 270 1803510 2 270 0 genus 379546 2 379547 1 Aciduliprofundum boonei 261 0 species 2633939 1 9 0 no rank 1 673860 Aciduliprofundum sp. MAR08-339 9 species 0 92 2290931 73745 clade 0 13539 1 0 class 224756 39 4 Methanomicrobia 0 order 1620 570264 3 570265 3 1620 0 family 1620 1 0 genus 570266 3 1 Methanocella Methanocella conradii 1 1175444 species 0 428 1175445 1 Methanocella arvoryzae 1191 0 species 24 94695 2 Methanosarcinales 6596 order 0 1 5245 1 0 family 2206 21 1 Methanosarcinaceae 2225 2 17 0 genus 2226 1 Methanococcoides methylutens 13 0 species 0 species 4 Methanococcoides burtonii 29291 1 0 genus 1356 196136 1 1356 0 species 39669 1 Methanosalsum zhilinae 2207 12 0 genus 3358 418008 1 Methanosarcina horonobensis 552 0 species 4 2644672 1409 no rank 0 species 0 50 Methanosarcina sp. Kolksee 1 1434099 species 0 778 Methanosarcina sp. MTP4 1 1434100 291 0 species 1434102 1 Methanosarcina sp. WH1 0 species 290 Methanosarcina sp. WWM596 1434103 1 170861 1 Methanosarcina lacustris 14 0 species Methanosarcina siciliae 38027 1 0 species 557 0 species 129 Methanosarcina barkeri 2208 1 species 0 106 Methanosarcina acetivorans 1 2214 1 2210 Methanosarcina thermophila 15 species 0 0 species 526 Methanosarcina mazei 2209 1 1 2215 Methanosarcina vacuolata 50 species 0 71 genus 0 2 2175 2176 1 Methanohalophilus mahii 5 0 species 66 species 0 1 2177 Methanohalophilus halophilus genus 0 14 1 101191 101192 1 Methanomethylovorans hollandica 14 0 species 1 2321 genus 0 2 1 2322 Methanohalobium evestigatum 2 species 0 2220 1 0 genus 426 426 species 0 1 420950 Methanolobus psychrophilus 143067 2 0 family 1349 1349 0 genus 2222 2 1328 species 0 1 301375 Methanosaeta harundinacea 21 species 0 1 2223 Methanothrix soehngenii order 1 0 5319 Methanomicrobiales 3 11 2191 2520 family 0 5 2194 230355 1 54 0 genus 54120 1 Methanolacinia petrolearia 54 0 species 2466 genus 0 1 4 45989 1 Methanoculleus 1 83986 Methanoculleus bourgensis 751 species 0 no rank 0 1512 1 2619537 species 0 1512 Methanoculleus sp. MAB1 1 86622 0 species 202 Methanoculleus marisnigri 2198 1 1198451 3 0 family 2105 395331 2 0 genus 461 359 species 0 1 358766 Methanoregula boonei 1 882104 Methanoregula formicica 102 species 0 475087 1 0 genus 1644 1644 0 species 475088 1 Methanosphaerula palustris 5 family 0 1 88404 1 2192 genus 0 5 0 species 5 Methanocorpusculum labreanum 83984 1 1 196137 family 0 686 686 0 genus 2202 1 Methanospirillum hungatei 2203 1 0 species 686 1 0 class 60206 176 Halobacteria 183963 53 order 1 0 16037 83 Haloferacales 15 1644055 1776 no rank 0 1 2678336 756883 1 halophilic archaeon DL31 1776 0 species 3669 family 1 0 7 1644056 Haloferacaceae 2 1 293431 5 genus 0 Haloquadratum walsbyi 293091 1 0 species 5 4 2251 Haloferax 2 3191 genus 1 0 2252 1 Haloferax mediterranei 87 0 species 2246 1 Haloferax volcanii 2780 0 species 322 0 species 35746 1 Haloferax gibbonsii 1 60846 471 genus 0 60847 1 Halogeometricum borinquense 471 0 species 0 family 10509 1963271 6 2614 0 1 genus 1644057 2 Salinigranum 1 0 species 2613 Salinigranum rubrum 755307 1 Halorubrum 2 56688 3 1 0 genus 2691 0 species 1584 Halorubrum trapanicum 29284 1 1105 species 0 1 2247 Halorubrum lacusprofundi 1209988 1 0 genus 5204 species 0 5204 Halopenitus persicus 1 1048396 22861 0 1 order 2235 21 412 Halobacteriales 7 2236 9137 family 0 113 0 genus 1656823 1 0 species 113 Halanaeroarchaeum sulfurireducens 1604004 1 1980514 1 37 0 genus 37 species 0 1 1873524 Halodesulfurarchaeum formicicum 1 332246 907 genus 0 species 0 907 Halalkalicoccus jeotgali 1 413810 Halobacterium 6 4 2239 genus 0 1 8080 Halobacterium hubeiense 1 1407499 species 0 1731 Halobacterium salinarum 2242 1 0 species 4040 no rank 0 2303 1 2668073 2303 species 0 1 751944 Halobacterium sp. DL1 Haloarculaceae 4 1963268 13 0 1 family 13312 2 146825 genus 0 1307 430914 1 Halorhabdus tiamatea 827 0 species species 0 480 Halorhabdus utahensis 1 146826 1 1073987 genus 0 958 958 no rank 0 1 2648975 Halorientalis sp. IM1011 1 1932360 species 0 958 2237 5 Haloarcula 9 5114 0 1 genus 51589 1 Haloarcula hispanica 1770 0 species no rank 0 2008 1 2624677 Haloarcula sp. CBA1115 1592728 1 0 species 2008 918 0 species 1932004 1 Haloarcula taiwanensis 1 2238 Haloarcula marismortui 409 species 0 1 0 genus 2996 Halomicrobium 4 203135 2 Halomicrobium mukohataei 1 57705 species 0 2992 63743 2 0 genus 2933 416273 1 Natronomonas moolapensis 334 0 species 1 2257 Natronomonas pharaonis 2599 species 0 1 0 order 21132 Natrialbales 554 1644060 16 1 0 family 20578 Natrialbaceae 11 1644061 15 0 1 genus 1745 Halobiforma 1 203193 2 0 species 1744 Halobiforma lacisalsi 229731 1 2 121871 genus 0 5420 Haloterrigena daqingensis 588898 1 0 species 1658 species 0 3762 Haloterrigena turkmenica 1 62320 88723 2 2544 0 genus species 0 710 Natrinema pellirubrum 1 69525 no rank 0 1834 1 2622230 species 0 1834 Natrinema sp. J7-2 1 406552 29287 1 879 0 genus 0 species 879 Natronococcus occultus 29288 1 2 387342 Halopiger 1 1430 genus 0 1 1429 species 0 1 387343 Halopiger xanaduensis 2256 1 769 0 genus species 0 769 Natronobacterium gregoryi 1 44930 63742 1 0 genus 2022 Natrialba magadii 1 13769 species 0 2022 4001 0 1 genus 1269201 2 1 Salinarchaeum 4000 0 no rank 2621923 1 1333523 1 Salinarchaeum sp. Harcht-Bsk1 4000 0 species 353799 1 1757 0 genus 1757 0 species 353800 1 Halostagnicola larsenii 0 class 11035 183968 40 1 0 order 11035 11 Thermococcales 2258 40 11024 0 1 family 2259 39 2 Thermococcaceae 318 0 1 genus 2260 8 Pyrococcus 1 287 0 species 1008460 1 Pyrococcus yayanosii Pyrococcus furiosus 2261 1 0 species 1 Pyrococcus kukulkanii 1 1609559 species 0 5 1 29292 Pyrococcus abyssi 2 species 0 Pyrococcus horikoshii 53953 1 0 species 11 2 2629106 11 no rank 0 1 342949 Pyrococcus sp. NA2 8 species 0 species 0 3 Pyrococcus sp. ST04 1 1183377 1315 genus 0 1 83867 1315 species 0 1 971279 Palaeococcus pacificus 1 0 genus 9389 1 Thermococcus 2263 29 1 277988 Thermococcus thioreducens 7 species 0 115 species 0 1 163003 Thermococcus cleftensis 0 species 6 Thermococcus barophilus 55802 1 Thermococcus gammatolerans 1 187878 species 0 661 Thermococcus litoralis 2265 1 0 species 7 693 0 species 53952 1 Thermococcus peptonophilus no rank 0 1891 6 2627626 1 246969 Thermococcus sp. AM4 405 species 0 0 species 495 Thermococcus sp. 4557 1042877 1 2008440 1 Thermococcus sp. 5-4 302 0 species 0 species 256 Thermococcus sp. P6 122420 1 Thermococcus sp. 2319x1 1 1674923 species 0 2 species 0 431 Thermococcus sp. EXT12c 1 2016361 1 2264 Thermococcus celer 379 species 0 Thermococcus barossii 1 54077 species 0 613 species 0 434 Thermococcus siculi 1 72803 195522 1 Thermococcus nautili 817 0 species Thermococcus piezophilus 1 1712654 species 0 524 species 0 573 Thermococcus profundus 1 49899 19 species 0 1 342948 Thermococcus onnurineus 9 0 species 582419 1 Thermococcus paralvinellae Thermococcus chitonophagus 54262 1 0 species 358 Thermococcus eurythermalis 1 1505907 species 0 860 Thermococcus sibiricus 1 172049 species 0 2 705 species 0 1 71998 Thermococcus pacificus 5 species 0 1 71997 Thermococcus gorgonarius 311400 1 Thermococcus kodakarensis 281 0 species 110164 1 Thermococcus guaymasensis 16 0 species Thermococcus radiotolerans 187880 1 0 species 413 0 class 2778 183980 7 2231 7 0 order 2778 2778 family 0 7 2232 1083 0 genus 2233 4 0 species 5 Archaeoglobus veneficus 58290 1 2 0 species 84156 1 Archaeoglobus profundus Archaeoglobus sulfaticallidus 1 1316941 species 0 3 2234 1 Archaeoglobus fulgidus 1073 0 species 0 genus 1066 54260 1 1066 species 0 1 54261 Ferroglobus placidus 629 genus 0 2 190818 Geoglobus acetivorans 565033 1 0 species 608 0 species 21 Geoglobus ahangari 113653 1 175 Bacteria 3902 2 superkingdom 1 0 11772785 0 clade 561 2498710 3 67814 3 561 0 phylum 561 class 0 1 3 693071 Caldisericia 1 560 1 0 order 693072 2 1 Caldisericales 559 0 family 693073 1 693074 1 559 0 genus 0 species 559 Caldisericum exile 693075 1 clade 0 5176497 1506 1783272 1 Tenericutes 84 544448 phylum 1 0 358914 7733 class 1 0 79 31969 Mollicutes 3 36 2085 4097 order 0 0 family 4097 2092 36 391 0 genus 2767358 10 2 species 0 1 29553 Mycoplasma bovirhinis 1 2107 Mycoplasma pulmonis 1 species 0 0 species 17 Mycoplasma agalactiae 2110 1 Mycoplasma arginini 1 2094 species 0 2 species 0 5 Mycoplasma canis 1 29555 1 species 0 1 2112 Mycoplasma bovigenitalium 4 species 0 1 2109 Mycoplasma synoviae 6 0 species 48003 1 Mycoplasma pullorum 1 2115 Mycoplasma fermentans 348 species 0 28903 1 Mycoplasma bovis 5 0 species 11 Mycoplasma 24 2093 genus 1 0 3702 species 0 6 Mycoplasma putrefaciens 1 2123 656088 3 0 species group 462 Mycoplasma mycoides 1 2102 species 0 454 Mycoplasma leachii 1 2105 species 0 3 Mycoplasma capricolum 1 2095 species 0 5 10 0 species 86660 1 Mycoplasma dispar Mycoplasma bovoculi 45362 1 0 species 3 0 species 366 Mycoplasma arthritidis 2111 1 1 species 0 1 2100 Mycoplasma hyorhinis Mycoplasma crocodyli 50052 1 0 species 2 3 species 0 1 2128 Mycoplasma flocculare 1 136241 Mycoplasma haemocanis 5 species 0 species 0 3 Mycoplasma wenyonii 1 65123 no rank 0 3 1 2683645 Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 1 0 species 3 species 0 972 Mycoplasma pneumoniae 1 2104 1 2097 Mycoplasma genitalium 2 species 0 2099 1 Mycoplasma hyopneumoniae 8 0 species species 0 1644 Mycoplasma penetrans 1 28227 species 0 4 Mycoplasma haemofelis 1 29501 Mycoplasma hominis 1 2098 species 0 4 1 2096 Mycoplasma gallisepticum 1 species 0 2118 1 Mycoplasma mobile 5 0 species 0 species 185 Mycoplasma yeatsii 51365 1 1 984991 Mycoplasma parvum 2 species 0 4 0 genus 2129 2 2 species 0 1 134821 Ureaplasma parvum Ureaplasma urealyticum 2130 1 0 species 2 0 order 3246 186328 33 33925 11 336 0 family 16 1 0 genus 46239 6 2 Mesoplasma 0 species 5 Mesoplasma tabanidae 219745 1 Mesoplasma chauliocola 1 216427 species 0 2 1 2151 Mesoplasma florum 2 species 0 1 225999 Mesoplasma syrphidae 1 species 0 species 0 4 Mesoplasma lactucae 1 138853 320 genus 1 0 5 46238 1 Entomoplasma 1 215578 Entomoplasma somnilux 2 species 0 Entomoplasma freundtii 1 74700 species 0 307 Entomoplasma melaleucae 81459 1 0 species 7 3 0 species 214888 1 Entomoplasma luminosum 2910 family 0 22 2131 2132 22 Spiroplasma 307 2910 1 0 genus 6 0 species 216944 1 Spiroplasma sabaudiense 216935 1 Spiroplasma culicicola 7 0 species 0 species 4 Spiroplasma litorale 216942 1 species 0 2 Spiroplasma eriocheiris 1 315358 species 0 548 Spiroplasma kunkelii 1 47834 species 0 3 Spiroplasma helicoides 1 216938 1 2133 Spiroplasma citri 16 species 0 2136 1 Spiroplasma monobiae 1 0 species 0 species 3 Spiroplasma apis 2137 1 Spiroplasma floricola 216937 1 0 species 3 species 0 2 Spiroplasma atrichopogonis 1 1114980 1821 species 0 1 216946 Spiroplasma turonicum Spiroplasma taiwanense 2145 1 0 species 168 2 2637901 4 no rank 0 2 0 species 1898044 1 Spiroplasma sp. TU-14 Spiroplasma sp. NBRC 100390 1914410 1 0 species 2 2 0 species 216945 1 Spiroplasma syrphidicola 2 species 0 1 216933 Spiroplasma chrysopicola Spiroplasma corruscae 216934 1 0 species 2 1 2144 Spiroplasma mirum 2 species 0 1 2139 Spiroplasma clarkii 1 species 0 6 0 species 216936 1 Spiroplasma diminutum 387 0 order 186329 9 family 0 387 9 2146 33926 5 343 0 genus 85632 1 0 species group 3 3 0 species 59748 1 Candidatus Phytoplasma australiense 333 species group 0 1 85630 Candidatus Phytoplasma mali 1 37692 species 0 333 species group 0 7 3 85620 species 0 3 Maize bushy stunt phytoplasma 1 202462 species 0 1 Aster yellows witches'-broom phytoplasma 1 229545 3 species 0 1 100379 Onion yellows phytoplasma 44 genus 0 4 2147 0 species 11 Acholeplasma laidlawii 2148 1 1 61635 Acholeplasma brassicae 5 species 0 1 35623 Acholeplasma oculi 14 species 0 Acholeplasma palmae 1 38986 species 0 14 no rank 0 9 2 2799557 9 genus 1 0 2 1912503 2 Candidatus Izimaplasma 7 no rank 0 1 2624196 7 species 0 1 1541959 Candidatus Izimaplasma sp. HR1 713063 2 351171 0 no rank Tenericutes bacterium MZ-XQ 1 1911683 species 0 1 Tenericutes bacterium MO-XQ 1 1911684 species 0 351170 1297 34 77768 0 phylum 188787 34 1688 Deinococci 77768 0 1 class 1 0 order 41555 Deinococcales 1645 118964 15 183710 14 Deinococcaceae 143 39910 1 0 family 39767 1 0 genus 1298 13 749 Deinococcus 0 species 1578 Deinococcus proteolyticus 55148 1 3677 0 species 1768108 1 Deinococcus actinosclerus 1309411 1 Deinococcus soli Cha et al. 2016 1678 0 species 1 502394 Deinococcus gobiensis 4032 species 0 1 2623546 5459 no rank 0 0 species 5459 Deinococcus sp. NW-56 2080419 1 species 0 2412 Deinococcus swuensis 1 1182571 1 309887 Deinococcus maricopensis 1815 species 0 Deinococcus peraridilitoris 432329 1 0 species 4003 310783 1 Deinococcus deserti 2919 0 species species 0 2110 Deinococcus puniceus 1 1182568 4571 species 0 1 1299 Deinococcus radiodurans 4764 0 species 68909 1 Deinococcus geothermalis 27270 0 1 order 68933 16 Thermales 208 0 1 family 27062 Thermaceae 19 188786 15 186191 1 0 genus 2187 Marinithermus hydrothermalis 1 186192 species 0 2187 65551 3 1 Meiothermus 6556 1 0 genus 0 species 3286 Meiothermus silvanus 52022 1 3269 0 species 277 1 Meiothermus ruber 15321 genus 1 0 8 270 Thermus 24 1 274 Thermus thermophilus 4477 species 0 456163 1 Thermus parvatiensis 2352 0 species species 0 725 Thermus aquaticus 1 271 0 species 1340 Thermus brockianus 56956 1 0 no rank 1488 2619321 1 1111069 1 Thermus sp. CCB_US3_UF1 1488 0 species species 0 2605 Thermus scotoductus 1 37636 0 species 2310 Thermus oshimai 56957 1 2979 genus 0 1 2 208447 3 Oceanithermus 0 species 2976 Oceanithermus profundus 187137 1 7255 0 order 2762275 2 2 332247 7255 family 0 332248 2 Truepera 366 7255 0 1 genus species 0 6889 Truepera radiovictrix 1 332249 1 Chloroflexi 200795 34 1 0 phylum 47551 6 301297 Dehalococcoidia 1 5134 class 0 1 670486 2 0 genus 3735 552810 1 Dehalogenimonas lykanthroporepellens 1166 0 species 1839801 1 Dehalogenimonas formicexedens 2569 0 species 3 1202465 1398 order 0 1398 0 family 1202464 3 0 1 genus 1398 Dehalococcoides 383 61434 3 Dehalococcoides mccartyi 61435 1 0 species 629 386 no rank 0 1 237581 species 0 386 Dehalococcoides sp. UCH007 1 1522671 5 292625 3816 class 0 5 292629 3816 order 0 1 Anaerolineaceae 292628 5 0 1 family 3816 1 233189 genus 0 943 Anaerolinea thermophila 1 167964 species 0 943 1 1324991 1838 no rank 0 Anaerolineaceae bacterium oral taxon 439 1 1889813 species 0 1838 genus 1 0 1034 Brevefilum 4 2 2019482 species 0 1030 Brevefilum fermentans 1 1986204 0 1 class 10288 1 Thermomicrobia 189775 7 4 85000 subclass 0 8951 85001 4 Sphaerobacterales 1 8951 0 1 order 8950 0 suborder 255728 3 2 Sphaerobacteraceae 85002 3 1 0 family 8950 8948 genus 1 0 2 2056 Sphaerobacter 2 8946 species 0 1 2057 Sphaerobacter thermophilus 189776 2 1336 0 order 1336 0 1 family 189777 2 1 Thermomicrobiaceae 1 499 genus 0 1335 500 1 Thermomicrobium roseum 1335 0 species 32061 8 15152 0 class 1 0 order 15152 1 Chloroflexales 32064 8 4 1508594 suborder 0 6900 6900 family 0 4 1106 6900 0 1 genus 1107 4 Chloroflexus 863 Chloroflexus aggregans 1 152260 species 0 1459 Chloroflexus aurantiacus 2289 2 1108 species 0 1 4578 Chloroflexus sp. Y-400-fl 480224 1 0 strain 2289 1508595 3 0 suborder 8251 family 0 8251 3 1508635 2 Roseiflexus 3 120961 genus 1 0 8251 Roseiflexus castenholzii 120962 1 0 species 3678 1 2609473 4571 no rank 0 4571 species 0 1 357808 Roseiflexus sp. RS-1 Ardenticatenia 3 5 1382928 class 0 1 9636 56 Ardenticatenales 4 1382929 order 0 1 9633 0 1 family 9577 5 Ardenticatenaceae 1382930 3 1988031 2 3 Candidatus Promineofilum 9572 1 0 genus 1806508 1 Candidatus Promineofilum breve 9569 0 species class 0 3524 2 475962 475963 2 Caldilineales 1 3524 1 0 order 1 475964 family 0 3523 1 233191 genus 0 3523 species 0 3523 Caldilinea aerophila 1 133453 201174 625 20 Actinobacteria 4262462 1 0 phylum no rank 0 1523 4 1752188 Actinobacteria bacterium IMCC19121 1848754 1 0 species 376 1848756 1 Actinobacteria bacterium IMCC26103 873 0 species Actinobacteria bacterium IMCC26077 1 1848755 species 0 218 species 0 56 Actinobacteria bacterium IMCC25003 1 1848255 class 1 0 4136254 10918 Actinobacteria 576 1760 Pseudonocardiales 100 85010 39 0 1 order 314716 314616 family 1 0 38 2070 Pseudonocardiaceae 8022 10391 genus 0 1 2029 0 species 10391 Kibdelosporangium phytohabitans 860235 1 7 1813 Amycolatopsis 776 85655 genus 0 1 17526 0 species 1814 1 Amycolatopsis methanolica 2618356 2 23764 0 no rank 15334 0 species 1896961 1 Amycolatopsis sp. AA4 species 0 8430 Amycolatopsis sp. BJA-103 1 1911175 Amycolatopsis japonica 1 208439 species 0 7876 Amycolatopsis orientalis 31958 1 0 species 20206 0 species 15507 Amycolatopsis mediterranei 33910 1 2 142577 1 Prauserella 7990 genus 1 0 7989 species 0 1 530584 Prauserella marina genus 0 4362 1 1851 Saccharomonospora viridis 1852 1 0 species 4362 14350 0 1 genus 1835 2 18 Saccharopolyspora Saccharopolyspora erythraea 1 1836 species 0 14332 2 43356 Kutzneria 9 10051 genus 0 1 0 species 10042 Kutzneria albida 43357 1 10790 genus 0 1 674734 10790 no rank 0 1 2636053 10790 species 0 1 1653480 Alloactinosynnema sp. L-07 609 Pseudonocardia 1847 8 1 0 genus 75279 1 240495 Pseudonocardia dioxanivorans 13467 species 0 no rank 0 61203 6 2619320 9948 species 0 1 1096868 Pseudonocardia sp. EC080625-04 9936 species 0 1 1096856 Pseudonocardia sp. EC080619-01 Pseudonocardia sp. AL041005-10 445576 1 0 species 10724 0 species 11173 Pseudonocardia sp. HH130629-09 1641402 1 species 0 9809 Pseudonocardia sp. EC080610-09 1 1688404 9613 species 0 1 1690815 Pseudonocardia sp. HH130630-07 Actinosynnema 797 3 40566 genus 1 0 25866 12085 species 0 1 40567 Actinosynnema mirum 12984 species 0 1 42197 Actinosynnema pretiosum 3 Saccharothrix 2071 2 1 0 genus 16710 Saccharothrix espanaensis 1 103731 species 0 16707 32419 genus 0 1 6 65496 Actinoalloteichus 1434 0 no rank 12328 2644606 2 Actinoalloteichus sp. GBA129-24 1612551 1 0 species 7734 1 2072503 Actinoalloteichus sp. AHMU CJ021 4594 species 0 species 0 7717 Actinoalloteichus sp. ADI127-7 1 1612552 3154 species 0 1 340345 Actinoalloteichus hymeniacidonis species 0 7786 Actinoalloteichus hoggarensis 1 1470176 12731 genus 0 1 2 165301 Lentzea 9 1586287 1 Lentzea guizhouensis 12722 0 species 1926 order 0 3 1643683 85032 3 1 Acidothermaceae 1926 1 0 family genus 1 0 1925 Acidothermus 4 2 28048 Acidothermus cellulolyticus 1 28049 species 0 1921 59430 0 1 order 85013 7 15 Frankiales 1 0 family 59415 Frankiaceae 965 74712 6 720 Frankia 1854 5 1 0 genus 58450 0 species 7259 Frankia casuarinae 106370 1 1 2632575 no rank 0 19852 19852 0 species 298653 1 Frankia sp. EAN1pec 18489 0 species 298654 1 Frankia inefficax 1 1859 Frankia alni 12130 species 0 order 0 22711 3 414714 414877 3 Catenulisporaceae 1440 22711 1 0 family Catenulispora 135 414878 2 1 0 genus 21271 21136 species 0 1 304895 Catenulispora acidiphila 2039638 11 0 order 487 11 2162846 487 family 0 Candidatus Nanopelagicus 1 4 2039639 genus 0 1 369 Candidatus Nanopelagicus limnes 1 1884634 species 0 19 Candidatus Nanopelagicus abundans 1884916 1 0 species 140 1884915 1 Candidatus Nanopelagicus hibericus 209 0 species 118 1 0 genus 622681 7 Candidatus Planktophila 8 1 1884913 Candidatus Planktophila lacus 57 species 0 12 0 species 1884904 1 Candidatus Planktophila sulfonica Candidatus Planktophila limnetica 1 573600 species 0 5 Candidatus Planktophila versatilis 1 1884905 species 0 10 Candidatus Planktophila dulcis 1 1884914 species 0 12 Candidatus Planktophila vernalis 1 1884907 species 0 14 10165 no rank 0 2 1643818 16 Thermobispora 147067 2 0 1 genus 10165 species 0 10149 Thermobispora bispora 1 2006 799 Streptosporangiales 85012 16 1 0 order 85504 Nocardiopsaceae 1312 7 83676 family 1 0 38807 6676 1 0 genus 83677 2 265 Thermobifida species 0 6411 Thermobifida fusca 1 2021 genus 0 1 30819 701 Nocardiopsis 4 2013 14222 species 0 1 2014 Nocardiopsis dassonvillei Nocardiopsis alba 1 53437 species 0 5811 0 species 10085 Nocardiopsis gilva 280236 1 2004 5 Streptosporangiaceae 924 33483 0 1 family 15 Streptosporangium 2000 2 1 0 genus 14568 1 2001 Streptosporangium roseum 14553 species 0 17991 0 1 genus 83681 2 Nonomuraea 5 no rank 0 17986 1 2593643 17986 species 0 1 1909395 Nonomuraea sp. ATCC 55076 1 0 family 12415 Thermomonosporaceae 7 2012 3 12408 0 1 genus 2019 2 Thermomonospora 411 11997 0 species 2020 1 Thermomonospora curvata 5499 1 0 order 622450 4 Actinopolysporales 1 5498 family 1 0 3 622451 Actinopolysporaceae 2 1849 2 Actinopolyspora 741 5496 0 1 genus 4755 0 species 414996 1 Actinopolyspora erythraea 0 1 order 459564 5591 Micrococcales 85006 138 993 Cellulomonadaceae 85016 6 0 1 family 26997 26004 1 0 genus 1707 5 268 Cellulomonas 1708 1 Cellulomonas fimi 8404 0 species 0 no rank 5872 2620175 1 Cellulomonas sp. PSBB021 1 2003551 species 0 5872 Cellulomonas gilvus 1 11 species 0 5279 Cellulomonas flavigena 1 1711 species 0 6181 536 Dermacoccaceae 7 145357 family 1 0 13043 2 57495 Dermacoccus 8 5407 genus 1 0 0 species 5399 Dermacoccus nishinomiyaensis 1274 1 57499 2 4 Kytococcus 2016 1 0 genus 2012 species 0 1 1276 Kytococcus sedentarius 745364 2 659 Luteipulveratus 5084 1 0 genus Luteipulveratus mongoliensis 1 571913 species 0 4425 2 85019 653 Brevibacteriaceae 11097 family 0 1 1696 1 10444 0 genus Brevibacterium linens 1 1703 species 0 10444 85017 9 Promicromonosporaceae 491 44565 1 0 family 7556 genus 1 0 2 186188 Xylanimonas 6 7550 0 species 186189 1 Xylanimonas cellulosilytica 23329 0 1 genus 157920 3 Cellulosimicrobium 1059 12150 species 0 1 1710 Cellulosimicrobium cellulans no rank 0 10120 1 2624466 10120 0 species 1980001 1 Cellulosimicrobium sp. TH-20 13189 genus 0 1 3 254250 1152 Isoptericola 6028 0 species 372663 1 Isoptericola dokdonensis 139208 1 Isoptericola variabilis 6009 0 species 172674 0 1 family 85023 48 Microbacteriaceae 2024 110932 2 455 Leifsonia 13458 0 1 genus Leifsonia xyli 1 1575 species 0 13003 genus 1 0 7873 Microterricola 1 2 518733 7872 0 species 412690 1 Microterricola viridarii 9613 genus 1 0 3 69578 Cryobacterium 3 Cryobacterium arcticum 670052 1 0 species 5976 2649013 1 0 no rank 3634 0 species 3634 Cryobacterium sp. LW097 1978566 1 6 1573 Clavibacter 937 18023 genus 0 1 28447 5 3736 Clavibacter michiganensis 17086 1 0 species Clavibacter insidiosus 1 33014 subspecies 0 4261 subspecies 0 3790 Clavibacter sepedonicus 1 31964 2451 subspecies 0 1 1874630 Clavibacter capsici subspecies 0 2848 Clavibacter nebraskensis 1 31963 2 447237 Frondihabitans 15 7295 genus 1 0 7280 no rank 0 1 2626248 0 species 7280 Frondihabitans sp. PAMC 28766 1795630 1 no rank 0 707 2 1655488 1655489 2 0 clade 707 707 0 genus 529883 2 Rhodoluna lacicola 1 529884 species 0 695 Candidatus Rhodoluna planktonica 535712 1 0 species 12 874 genus 0 1 1434032 874 0 species 1159327 1 Pontimonas salivibrio 4 2034 221 Curtobacterium 18832 genus 1 0 Curtobacterium pusillum 69373 1 0 species 6788 257496 2 11823 0 no rank Curtobacterium sp. BH-2-1-1 1905847 1 0 species 5890 1561023 1 Curtobacterium sp. MR_MD2014 5933 0 species 1 0 genus 5352 6 Agromyces 33877 2 453304 1 Agromyces aureus 5346 0 species 8027 genus 1 0 2 1759331 1 Cnuibacter 0 species 8026 Cnuibacter physcomitrellae 1619308 1 5830 0 1 genus 337004 2 5 Microcella 279828 1 Microcella alkaliphila 5825 0 species 1705353 2 Aurantimicrobium 1 1352 0 1 genus 1351 0 species 708131 1 Aurantimicrobium minutum 6098 genus 0 1 3 33886 Rathayibacter 6 2545 0 species 33888 1 Rathayibacter tritici Rathayibacter toxicus 145458 1 0 species 3547 0 1 genus 67316 2472 Microbacterium 33882 14 species 0 5717 Microbacterium chocolatum 1 84292 Microbacterium paludicola 300019 1 0 species 5701 1 2033 Microbacterium testaceum 3838 species 0 36805 1 Microbacterium aurum 6880 0 species 2609290 8 37236 0 no rank 1 1916917 Microbacterium sp. 1.5R 4142 species 0 1714373 1 Microbacterium sp. No. 7 5285 0 species 1795053 1 Microbacterium sp. PAMC 28756 4976 0 species 4200 0 species 1906742 1 Microbacterium sp. BH-3-3-3 1 1938334 Microbacterium sp. TPU 3598 6024 species 0 Microbacterium sp. XT11 1 367477 species 0 3543 5403 0 species 2103230 1 Microbacterium sp. str. 'China' 3663 0 species 1696072 1 Microbacterium sp. CGR1 162426 1 Microbacterium hominis 5472 0 species family 0 166 1 85018 1 1862 genus 0 166 0 species 166 Dermatophilus congolensis 1863 1 35595 family 1 0 11 85020 13 Dermabacteraceae 1481 1 0 genus 472568 2 Devriesea 1 Devriesea agamarum 1 472569 species 0 1480 genus 0 1 31477 Brachybacterium 204 6 43668 7749 0 species 1331682 1 Brachybacterium ginsengisoli 0 species 6767 Brachybacterium sp. VM2412 2017484 1 0 no rank 6424 2623841 1 Brachybacterium sp. P6-10-X1 1 1903186 species 0 6424 Brachybacterium faecium 1 43669 species 0 4370 species 0 5963 Brachybacterium sp. VR2415 1 2017485 1 Dermabacter 2 36739 genus 1 0 2624 Dermabacter vaginalis 1630135 1 0 species 2623 7 0 no rank 577468 1 1 2038 7 genus 0 7 0 species 2039 1 Tropheryma whipplei family 0 538 2 85022 538 1 0 genus 43673 2 Jonesia 12 1 43674 Jonesia denitrificans 526 species 0 0 1 family 100947 1478 Micrococcaceae 1268 36 596707 2 14 Sinomonas 8833 0 1 genus 0 species 8819 Sinomonas atrocyanea 37927 1 2504 genus 0 1 1868332 2504 species 0 1 556325 Neomicrococcus aestuarii 50357 genus 1 0 15 1663 390 Arthrobacter 39426 0 no rank 235627 12 1221 species 0 1 1118963 Arthrobacter sp. Rue61a 0 species 2046 Arthrobacter sp. YN 2020486 1 Arthrobacter sp. U41 1849032 1 0 species 4907 0 species 4105 Arthrobacter sp. ERGS1:01 1704044 1 3839 species 0 1 1771959 Arthrobacter sp. ATCC 21022 0 species 1851 Arthrobacter sp. LS16 1690248 1 species 0 5335 Arthrobacter sp. FB24 1 290399 0 species 1912 Arthrobacter sp. ZXY-2 1806905 1 1494608 1 Arthrobacter sp. PAMC 25486 2895 0 species species 0 3054 Arthrobacter sp. QXT-31 1 1357915 4081 species 0 1 1652545 Arthrobacter sp. YC-RL1 0 species 4180 Arthrobacter sp. PGP41 2079227 1 0 species 5326 Arthrobacter crystallopoietes 37928 1 0 species 5215 Arthrobacter alpinus 656366 1 0 genus 1949 32207 2 1 43675 Rothia mucilaginosa 1940 species 0 Rothia dentocariosa 2047 1 0 species 9 2 1742989 22 Glutamicibacter 2752 genus 0 1 Glutamicibacter arilaitensis 1 256701 species 0 2730 Micrococcus 12 2 1269 genus 0 1 5524 1 1270 Micrococcus luteus 5512 species 0 4 1742993 Pseudarthrobacter 454 8901 genus 1 0 121292 1 Pseudarthrobacter sulfonivorans 3138 0 species Pseudarthrobacter chlorophenolicus 1 85085 species 0 2089 3220 species 0 1 361575 Pseudarthrobacter phenanthrenivorans 1 2078575 genus 0 2449 species 0 2449 Arthrobacter sp. IHBB 11108 1 1618207 13701 genus 0 1 4 57493 24 Kocuria species 0 3784 Kocuria rhizophila 1 72000 species 0 5011 Kocuria flava 1 446860 species 0 4882 Kocuria palustris 1 71999 1742992 1 0 genus 1538 0 species 1538 Paenarthrobacter aurescens 43663 1 0 genus 961 1645 1 1646 1 Renibacterium salmoninarum 961 0 species 125316 2 0 family 8580 8580 0 1 genus 84756 2 234 Beutenbergia 8346 species 0 1 84757 Beutenbergia cavernae 145360 3 2 Sanguibacteraceae 8336 0 1 family 60919 2 Sanguibacter 7 8334 0 1 genus 0 species 8327 Sanguibacter keddieii 60920 1 family 0 1 31428 Intrasporangiaceae 250 9 85021 2 267408 Arsenicicoccus 1 5950 genus 1 0 no rank 0 5949 1 2663846 Arsenicicoccus sp. oral taxon 190 1658671 1 0 species 5949 9725 0 1 genus 53357 2 Intrasporangium 2 0 species 9723 Intrasporangium calvum 53358 1 5690 1 0 genus 53457 2 Janibacter 4 Janibacter indicus 1 857417 species 0 5686 18 Serinicoccus 265976 2 0 1 genus 9813 1758689 1 Serinicoccus sp. JLT9 9795 0 species 85004 24 Bifidobacteriales 521 44524 1 0 order 23 31953 Bifidobacteriaceae 604 44003 family 1 0 1 2701 1198 genus 0 Gardnerella vaginalis 2702 1 0 species 1198 0 genus 6 196081 1 6 species 0 1 78259 Scardovia inopinata 1678 19 299 Bifidobacterium 41830 0 1 genus 1691 1 Bifidobacterium indicum 737 0 species 1689 1 Bifidobacterium dentium 1910 0 species 1 28025 Bifidobacterium animalis 2657 species 0 1 638619 Bifidobacterium actinocoloniiforme 286 species 0 Bifidobacterium asteroides 1 1684 species 0 690 1079 Bifidobacterium catenulatum 1686 2 0 1 species 2157 subspecies 0 1078 Bifidobacterium kashiwanohense 1 630129 0 species 801 Bifidobacterium coryneforme 1687 1 4045 species 0 1 158787 Bifidobacterium scardovii Bifidobacterium bifidum 1 1681 species 0 3604 0 species 695 Bifidobacterium pseudocatenulatum 28026 1 species 0 6608 Bifidobacterium pseudolongum 1 1694 216816 1 Bifidobacterium longum 6201 0 species species 0 3223 Bifidobacterium breve 1 1685 Bifidobacterium angulatum 1 1683 species 0 410 2988 0 species 33905 1 Bifidobacterium thermophilum Bifidobacterium choerinum 1 35760 species 0 2024 Bifidobacterium adolescentis 1680 1 0 species 2495 196082 1 365 0 genus 1 78258 Parascardovia denticolens 365 species 0 33 85009 Propionibacteriales 543 142571 order 0 1 1752 Nocardioidaceae 85015 13 0 1 family 82050 9441 genus 1 0 2 2040 Aeromicrobium 1 Aeromicrobium erythreum 2041 1 0 species 9440 579 Kribbella 182639 2 1 0 genus 16233 182640 1 Kribbella flavida 15654 0 species genus 1 0 27217 195 Nocardioides 4 1839 Nocardioides dokdonensis 1 450734 species 0 9265 1 2615069 11223 no rank 0 11223 0 species 196162 1 Nocardioides sp. JS614 Nocardioides sp. 78 1 2045452 species 0 6534 2 2044 Pimelobacter 480 15520 genus 0 1 2045 1 Pimelobacter simplex 15040 0 species 793 Micropruina 2 116071 genus 0 1 11887 Micropruina glycogenica 1 75385 species 0 11094 59978 family 0 1 19 31957 1307 Propionibacteriaceae 107 Propionibacterium 1743 3 1 0 genus 5741 4507 0 species 1744 1 Propionibacterium freudenreichii no rank 0 1127 1 2608905 1127 species 0 1 671223 Propionibacterium sp. oral taxon 193 7394 genus 1 0 2 29404 Microlunatus 51 Microlunatus phosphovorus 1 29405 species 0 7343 2622 0 genus 2801844 1 0 species 2622 Pseudopropionibacterium propionicum 1750 1 5 Cutibacterium 1912216 4 0 1 genus 8282 Cutibacterium acnes 1747 1 0 species 3965 2870 0 species 33011 1 Cutibacterium granulosum 1442 0 species 33010 1 Cutibacterium avidum 1912215 2 1 Acidipropionibacterium 4868 0 1 genus 0 species 4867 Acidipropionibacterium acidipropionici 1748 1 Tessaracoccus 1172 5 72763 genus 1 0 28473 1332264 1 Tessaracoccus aquimaris 9169 0 species 8933 0 no rank 2635419 1 Tessaracoccus sp. T2.5-30 1909732 1 0 species 8933 species 0 2978 Tessaracoccus flavus 1 1610493 Tessaracoccus flavescens 399497 1 0 species 6221 genus 0 1291 1 203133 no rank 0 1291 1 2633994 species 0 1291 Propionimicrobium sp. Marseille-P3275 1 1871034 36183 0 1 order 2037 16 Actinomycetales 52 2049 15 Actinomycetaceae 184 36131 0 1 family 1 2050 559 genus 0 559 species 0 1 2051 Mobiluncus curtisii 0 genus 717 28263 1 species 0 717 Arcanobacterium haemolyticum 1 28264 1701 0 genus 1069494 1 0 species 1701 Trueperella pyogenes 1661 1 0 genus 1801 2529408 1 species 0 1801 Actinomyces meyeri 1 52773 1606 genus 0 1 1653174 Actinotignum schaalii 59505 1 0 species 1606 29563 genus 0 1 9 1654 442 Actinomyces species 0 7910 Actinomyces radicidentis 1 111015 10826 0 no rank 2609248 3 1 2081702 Actinomyces sp. oral taxon 897 2796 species 0 2839 species 0 1 1851395 Actinomyces sp. Chiba101 5191 0 species 712122 1 Actinomyces sp. oral taxon 414 Actinomyces sp. VUL4_3 1912795 1 0 species 30 5430 0 species 544580 1 Actinomyces oris 1852377 1 Actinomyces pacaensis 447 0 species species 0 4478 Actinomyces gaoshouyii 1 1960083 622452 3 8876 0 order 8876 family 1 0 3 83778 50 Kineosporiaceae 2 33981 5 Kineococcus 8826 genus 0 1 species 0 8821 Kineococcus radiotolerans 1 131568 1643684 4 8 Nakamurellales 11472 1 0 order 382 Nakamurellaceae 85031 3 0 1 family 11464 Nakamurella 103 2 53460 genus 1 0 11082 Nakamurella multipartita 1 53461 species 0 10979 72 Micromonosporales 85008 19 0 1 order 216360 0 1 family 216288 Micromonosporaceae 1560 28056 18 4 1873 66 Micromonospora 40828 genus 0 1 1003110 1 Verrucosispora maris 14391 0 species 47850 1 Micromonospora aurantiaca 10646 0 species 15725 0 no rank 2617518 1 15725 species 0 1 648999 Micromonospora sp. L5 514 Salinispora 3 168694 genus 0 1 11509 168695 1 Salinispora tropica 5795 0 species 1 168697 Salinispora arenicola 5200 species 0 6 1865 1314 Actinoplanes 79171 genus 0 1 2626549 3 49827 0 no rank 16514 species 0 1 134676 Actinoplanes sp. SE50/110 Actinoplanes sp. SE50 1 2033844 species 0 16514 0 species 16799 Actinoplanes sp. N902-109 649831 1 species 0 16133 Actinoplanes friuliensis 1 196914 11897 species 0 1 1866 Actinoplanes missouriensis 840 Plantactinospora 673534 4 1 0 genus 83220 2631981 3 0 no rank 82380 13869 0 species 2108470 1 Plantactinospora sp. BC1 1 2071627 Plantactinospora sp. BB1 55401 species 0 Plantactinospora sp. KBS50 1 2024580 species 0 13110 1 0 order 45477 Geodermatophilales 1 1643682 8 Geodermatophilaceae 1194 85030 7 0 1 family 45476 170 Geodermatophilus 1860 2 1 0 genus 11659 Geodermatophilus obscurus 1861 1 0 species 11489 2 88138 Modestobacter 224 16593 genus 0 1 0 species 16369 Modestobacter marinus 477641 1 genus 1 0 16030 Blastococcus 778 2 38501 15252 species 0 1 138336 Blastococcus saxobsidens order 1 0 1867420 4171 Corynebacteriales 159 85007 Corynebacteriaceae 980 1653 52 0 1 family 96227 51 1716 1322 Corynebacterium 95247 genus 1 0 0 species 274 Corynebacterium ammoniagenes 1697 1 1 136857 Corynebacterium testudinoris 2633 species 0 Corynebacterium callunae 1 1721 species 0 2183 4705 species 0 1 1223514 Corynebacterium humireducens 92706 1 [Brevibacterium] flavum 798 0 species 1 1230998 Corynebacterium frankenforstense 4482 species 0 1050174 1 Corynebacterium epidermidicanis 1410 0 species 161899 1 Corynebacterium singulare 944 0 species 1417 0 species 43770 1 Corynebacterium striatum Corynebacterium halotolerans 225326 1 0 species 1234 Corynebacterium doosanense 1 1121358 species 0 3473 191493 1 Corynebacterium sphenisci 4696 0 species 1 108486 Corynebacterium falsenii 623 species 0 1 89154 Corynebacterium terpenotabidum 3208 species 0 0 species 3368 Corynebacterium maris 575200 1 0 species 2281 Corynebacterium efficiens 152794 1 Corynebacterium kroppenstedtii 161879 1 0 species 958 species 0 274 Corynebacterium diphtheriae 1 1717 Corynebacterium aurimucosum 1 169292 species 0 151 Corynebacterium vitaeruminis 1 38305 species 0 3294 Corynebacterium atypicum 191610 1 0 species 325 species 0 4920 Corynebacterium variabile 1 1727 1539 species 0 1 1718 Corynebacterium glutamicum 0 species 3105 Corynebacterium uterequi 1072256 1 Corynebacterium casei 160386 1 0 species 172 187491 1 Corynebacterium glaucum 2574 0 species 1 161895 Corynebacterium phocae 585 species 0 0 species 574 Corynebacterium argentoratense 42817 1 species 0 1410 Corynebacterium flavescens 1 28028 4128 0 species 43771 1 Corynebacterium urealyticum 4622 0 species 1404244 1 Corynebacterium glyciniphilum Corynebacterium camporealensis 161896 1 0 species 1364 1 156978 Corynebacterium imitans 2002 species 0 0 species 1952 Corynebacterium aquilae 203263 1 1 35755 Corynebacterium kutscheri 3 species 0 2 2624378 2727 no rank 0 Corynebacterium sp. ATCC 6931 1 1487956 species 0 1937 702967 1 Corynebacterium sp. NML98-0116 790 0 species Corynebacterium crudilactis 1 1652495 species 0 41 Corynebacterium marinum 349751 1 0 species 6882 21 species 0 1 1719 Corynebacterium pseudotuberculosis species 0 1126 Corynebacterium deserti 1 1408191 species 0 3686 Corynebacterium jeikeium 1 38289 Corynebacterium simulans 1 146827 species 0 672 species 0 87 Corynebacterium resistens 1 258224 0 species 611 Corynebacterium cystitidis 35757 1 0 species 1056 Corynebacterium ulcerans 65058 1 1 1705 Corynebacterium stationis 211 species 0 1456 0 species 1231000 1 Corynebacterium lactis Corynebacterium ureicelerivorans 401472 1 0 species 3571 species 0 97 Corynebacterium mustelae 1 571915 0 1 family 1040800 3469 Nocardiaceae 85025 31 947498 genus 0 1 23 1827 6293 Rhodococcus 4718 0 species 1828 1 Rhodococcus fascians 4422 species 0 1 1833 Rhodococcus erythropolis 12 192944 55551 no rank 0 Rhodococcus sp. PBTS 1 1653478 1 0 species 5160 1 1033922 Rhodococcus sp. WB1 8953 species 0 species 0 3358 Rhodococcus sp. 2G 1 1570939 1723645 1 Rhodococcus sp. 008 4915 0 species 1 1807790 Rhodococcus sp. BH4 3779 species 0 species 0 3019 Rhodococcus sp. B7740 1 1564114 5232 species 0 1 679318 Rhodococcus sp. WMMA185 4271 0 species 1727214 1 Rhodococcus sp. H-CA8f Rhodococcus sp. p52 1 935199 species 0 4820 0 species 5337 Rhodococcus sp. MTM3W5.2 1805827 1 3852 0 species 1045808 1 Rhodococcus sp. YL-1 Rhodococcus sp. PBTS 2 1 1653479 species 0 2855 1 191292 Rhodococcus aetherivorans 11711 species 0 1829 1 Rhodococcus rhodochrous 6148 0 species 1 132919 Rhodococcus jostii 7340 species 0 0 species 825265 Rhodococcus opacus 37919 1 2431 species 0 1 334542 Rhodococcus qingshengii 6145 0 species 43767 1 Rhodococcus hoagii 7238 0 species 103816 1 Rhodococcus pyridinivorans 0 species 10236 Rhodococcus ruber 1830 1 Nocardia 351 1817 7 1 0 genus 89833 17217 0 species 135487 1 Nocardia cyriacigeorgica Nocardia nova 37330 1 0 species 14463 0 species 24779 Nocardia brasiliensis 37326 1 Nocardia terpenica 1 455432 species 0 10278 0 species 9495 Nocardia seriolae 37332 1 1 37329 Nocardia farcinica 13250 species 0 4 85028 6 Tsukamurellaceae 14524 family 0 1 Tsukamurella 227 3 2060 genus 1 0 14518 4297 species 0 1 2061 Tsukamurella paurometabola 57704 1 Tsukamurella tyrosinosolvens 9994 0 species 4014 family 0 1 316606 4014 0 genus 286801 1 4014 0 species 286802 1 Segniliparus rotundus 4 85029 Dietziaceae 2 10370 family 0 1 10368 0 1 genus 37914 3 Dietzia 608 species 0 4805 Dietzia timorensis 1 499555 0 no rank 4955 2617939 1 4955 0 species 712270 1 Dietzia sp. oral taxon 368 697024 1 315 0 no rank 1847725 1 0 genus 315 315 0 species 1528099 1 Lawsonella clevelandensis 642388 0 1 family 1762 56 1778 Mycobacteriaceae 132663 0 genus 1866885 13 0 species 8462 Mycobacterium rhodesiae 36814 1 6563 species 0 1 1772 Mycobacterium smegmatis 1791 1 Mycobacterium aurum 12760 0 species 13003 0 species 110539 1 Mycobacterium vanbaalenii 1 1766 Mycobacterium fortuitum 9129 species 0 species 0 15199 Mycobacterium phlei 1 1771 1804 1 Mycobacterium gilvum 9130 0 species 0 species 9107 Mycobacterium chubuense 1800 1 1 1810 Mycobacterium vaccae 9740 species 0 11451 0 species 134601 1 Mycobacterium goodii 0 species 7908 Mycobacterium neoaurum 1795 1 0 species 9985 Mycobacterium litorale 758802 1 species 0 10226 Mycobacterium thermoresistibile 1 1797 24456 0 genus 670516 5 9993 species 0 1 36809 Mycobacterium abscessus Mycobacterium immunogenum 1 83262 species 0 4877 Mycobacterium chelonae 1774 1 0 species 4276 species 0 2901 Mycobacterium stephanolepidis 1 1520670 species 0 2409 Mycobacterium saopaulense 1 1578165 25356 Mycobacterium 1763 34 1 0 genus 459345 13 2642494 no rank 0 116318 Mycobacterium sp. MCS 1 164756 species 0 8633 0 species 11280 Mycobacterium sp. JS623 212767 1 species 0 9008 Mycobacterium sp. PYR15 1 2051552 7908 species 0 1 1570328 Mycobacterium sp. NRRL B-3805 0 species 9694 Mycobacterium sp. EPa45 1545728 1 0 species 7698 Mycobacterium sp. MOTT36Y 1168287 1 Mycobacterium sp. QIA-37 1561223 1 0 species 4710 8990 species 0 1 1273687 Mycobacterium sp. VKM Ac-1817D Mycobacterium sp. YC-RL4 1 1682113 species 0 10634 1 1879023 Mycobacterium sp. djl-10 9999 species 0 Mycobacterium sp. WY10 1920667 1 0 species 10288 8733 0 species 189918 1 Mycobacterium sp. KMS Mycobacterium sp. JLS 1 164757 species 0 8743 13560 0 species 29311 1 Mycobacterium haemophilum 143969 species group 0 8 120793 26831 species 0 1 339268 Mycobacterium colombiense 60913 species 0 1 1764 Mycobacterium avium 1 1138383 Mycobacterium paraintracellulare 6774 species 0 12798 species 0 1 701042 Mycobacterium marseillense 0 1 species 36653 Mycobacterium intracellulare 9113 1767 4 Mycobacterium indicus pranii 35617 1 0 subspecies 4727 1 222805 Mycobacterium chimaera 16034 subspecies 0 Mycobacterium yongonense 1 1203599 subspecies 0 6779 53195 species group 0 4 77643 Mycobacterium canettii 1 78331 species 0 12878 40317 0 1 species 1773 3 Mycobacterium tuberculosis 13394 biotype 0 13556 Mycobacterium bovis 1 1765 Mycobacterium africanum 1 33894 biotype 0 13367 19102 species 0 1 1781 Mycobacterium marinum 26508 0 species group 2249310 1 26508 species 0 1 722731 Mycobacterium shigaense species 0 12373 Mycobacterium ulcerans 1 1809 Mycobacterium liflandii 261524 1 0 species 15608 1 482462 Mycobacterium dioxanotrophicus 9941 species 0 species 0 20274 Mycobacterium kansasii 1 1768 Mycobacterium leprae 1 1769 species 0 3141 697025 1 4910 0 genus 4910 0 species 639313 1 Hoyosella subflava 19236 genus 0 2 1073531 7787 0 species 875328 1 Mycobacterium sinense 1 1788 Mycobacterium terrae 11449 species 0 1 0 family 54611 Gordoniaceae 2163 85026 9 8 2053 Gordonia 1331 52448 genus 0 1 1 2054 Gordonia bronchialis 9479 species 0 0 no rank 15396 2657482 2 2059875 1 Gordonia sp. YC-JH1 5903 0 species 9493 0 species 337191 1 Gordonia sp. KTR9 1136941 1 Gordonia phthalatica 8414 0 species 84595 1 Gordonia polyisoprenivorans 7530 0 species species 0 4161 Gordonia iterans 1 1004901 2055 1 Gordonia terrae 6137 0 species 0 no rank 4338 52018 1 1650658 1 Actinobacteria bacterium IMCC26256 4338 0 species order 1 0 778543 Streptomycetales 1338 82 85011 family 1 0 777205 Streptomycetaceae 4180 81 2062 Streptomyces 27396 75 1883 genus 0 1 720410 Streptomyces niveus 193462 1 0 species 7595 2593676 24 0 no rank 221384 1849967 1 Streptomyces sp. SAT1 6878 0 species 7685 0 species 1751294 1 Streptomyces sp. 4F 1961713 1 Streptomyces sp. MOE7 6362 0 species 1561022 1 Streptomyces sp. CCM_MD2014 11588 0 species Streptomyces sp. 769 1262452 1 0 species 8613 Streptomyces sp. P3 2135430 1 0 species 8628 7823 species 0 1 2094021 Streptomyces sp. WAC00288 Streptomyces sp. FR-008 206662 1 0 species 10714 11122 0 species 1972846 1 Streptomyces sp. Sge12 465541 1 Streptomyces sp. Mg1 9794 0 species 1 1649184 Streptomyces sp. CFMR 7 7097 species 0 Streptomyces sp. 3211 1964449 1 0 species 8063 5551 0 species 862751 1 Streptomyces sp. SirexAA-E 234612 1 Streptomyces sp. TN58 9190 0 species species 0 9034 Streptomyces sp. S8 1 1837283 Streptomyces sp. RTd22 1 1841249 species 0 9139 7083 species 0 1 1661694 Streptomyces sp. Tue 6075 Streptomyces sp. CNQ-509 1 444103 species 0 8930 15514 0 species 1725411 1 Streptomyces sp. CdTB01 0 species 8709 Streptomyces sp. CLI2509 1984801 1 0 species 12586 Streptomyces sp. fd1-xmd 1812480 1 Streptomyces sp. CMB-StM0423 1 2059884 species 0 14074 1495638 1 Streptomyces sp. M56 11344 0 species 1 1265601 Streptomyces sp. PAMC 26508 5863 species 0 Streptomyces xiamenensis 1 408015 species 0 5859 Streptomyces cattleya 29303 1 0 species 14545 7295 0 species 164348 1 Streptomyces puniciscabiei 7394 0 species 1935 1 Streptomyces violaceoruber 10814 species 0 1 379067 Streptomyces bingchenggensis Streptomyces scabiei 1930 1 0 species 6909 0 species 6893 Streptomyces sp. XZHG99 2049881 1 1 1907 Streptomyces glaucescens 7176 species 0 629295 2 0 species group 12995 1 1482596 7182 species subgroup 0 Streptomyces griseus 1 1911 species 0 7182 5813 0 species subgroup 1482558 1 Streptomyces globisporus 1 1908 species 0 5813 11028 0 species 92644 1 Streptomyces malaysiensis Streptomyces lavendulae 1 1914 species 0 10817 1 1916 Streptomyces lividans 4781 species 0 Streptomyces pactum 68249 1 0 species 14329 Streptomyces venezuelae 1 54571 species 0 16175 7290 0 species 1169025 1 Streptomyces pratensis Streptomyces clavuligerus 1901 1 0 species 9094 5909 species 0 1 1950 Streptomyces peucetius 6584 0 species 1355015 1 Streptomyces pluripotens 15299 species 0 1 1915 Streptomyces lincolnensis 8865 0 species 68192 1 Streptomyces cyaneogriseus 10001 species 0 1 67267 Streptomyces alboflavus 8712 species 0 1 1437453 Streptomyces leeuwenhoekii 10230 0 species 75293 1 Streptomyces autolyticus 8566 species 0 1 38300 Streptomyces pristinaespiralis 1 1642299 Streptomyces alfalfae 7744 species 0 1 68570 Streptomyces albulus 8702 species 0 10333 species 0 1 42684 Streptomyces collinus 1 1971 Streptomyces noursei 9698 species 0 1 1616117 Streptomyces formicae 13026 species 0 6926 0 species 1038928 1 Streptomyces xinghaiensis 5258 0 species 285473 1 Streptomyces rubrolavendulae Streptomyces chartreusis 1 1969 species 0 7301 1926 1 Streptomyces reticuli 11828 0 species 0 species 5708 Streptomyces gilvosporeus 553510 1 Streptomyces parvulus 1 146923 species 0 9338 species 0 5313 Streptomyces avermitilis 1 33903 1783515 1 Streptomyces sp. S10(2016) 9185 0 species 1 1912 Streptomyces hygroscopicus 23649 species 0 0 species group 19522 1477431 2 Streptomyces sampsonii 1 42239 species 0 10084 Streptomyces coelicolor 1 1902 species 0 9438 species 0 7871 Streptomyces ambofaciens 1 1889 0 species 10174 Streptomyces violaceusniger 68280 1 Streptomyces fulvissimus 68202 1 0 species 4630 8061 0 species 68214 1 Streptomyces griseochromogenes Streptomyces albireticuli 1940 1 0 species 7337 0 species 18562 Streptomyces lydicus 47763 1 Streptomyces albus 1888 1 0 species 16107 1 362257 Streptomyces vietnamensis 10202 species 0 52615 1 0 genus 2063 5 Kitasatospora 1339 1 68173 Kitasatospora albolonga 8549 species 0 Kitasatospora setae 2066 1 0 species 15421 species 0 12285 Kitasatospora aureofaciens 1 1894 0 no rank 15021 2633591 1 0 species 15021 Kitasatospora sp. MMS16-BH015 2018025 1 85014 3 9570 0 order 9570 0 1 family 85034 3 6 Glycomycetaceae 9564 genus 0 1 2 283810 2 Stackebrandtia 0 species 9562 Stackebrandtia nassauensis 283811 1 84992 6 0 class 44892 44892 order 1 0 6 84993 856 Acidimicrobiales 0 family 23286 2448023 2 23286 genus 1 0 2 682522 15 Ilumatobacter Ilumatobacter coccineus 467094 1 0 species 23271 84994 3 11 Acidimicrobiaceae 20750 0 1 family 20739 genus 0 1 2 53634 Acidimicrobium 170 20569 species 0 1 53635 Acidimicrobium ferrooxidans 4 Thermoleophilia 1497346 5 1 0 class 19101 521 Solirubrobacterales 4 588673 order 0 1 19097 18576 family 0 1 3 320583 Conexibacteraceae 198 18378 0 1 genus 191494 2 Conexibacter 7 18371 species 0 1 191495 Conexibacter woesei 49019 1 0 class 84998 29 Coriobacteriia 1008 Eggerthellales 1525 15 1643822 order 0 1 30988 14 1643826 Eggerthellaceae 172 29463 family 1 0 Adlercreutzia 1243 447020 2 1 0 genus 5386 1 446660 Adlercreutzia equolifaciens 4143 species 0 genus 0 237 1 1981050 237 species 0 1 1944646 Phoenicibacter massiliensis Eggerthella 252 84111 3 1 0 genus 8738 7215 0 species 84112 1 Eggerthella lenta 1271 no rank 0 1 2648737 1271 species 0 1 502558 Eggerthella sp. YY7918 2 84162 Cryptobacterium 1 74 genus 1 0 0 species 73 Cryptobacterium curtum 84163 1 3164 0 genus 79603 1 Denitrobacterium detoxificans 1 79604 species 0 3164 1 84108 1685 genus 0 1 84110 Slackia heliotrinireducens 1685 species 0 genus 1 0 10007 3 Gordonibacter 3 644652 Gordonibacter massiliensis 1 1841863 species 0 5273 0 species 4731 Gordonibacter urolithinfaciens 1335613 1 17023 0 1 order 84999 13 85 Coriobacteriales 8509 0 1 family 1643824 6 3 Atopobiaceae 10 genus 0 1 2767353 1 1382 Atopobium parvulum 10 species 0 8496 0 1 genus 133925 4 91 Olsenella species 0 4139 Olsenella uli 1 133926 Olsenella sp. Marseille-P2300 1 1805478 species 0 4029 2638792 1 0 no rank 237 1 712411 Olsenella sp. oral taxon 807 237 species 0 Coriobacteriaceae 10 84107 6 0 1 family 8429 2 102106 8 Collinsella 2117 genus 1 0 1 74426 Collinsella aerofaciens 2109 species 0 33870 2 3 Coriobacterium 1020 0 1 genus 0 species 1017 Coriobacterium glomerans 33871 1 1 84113 5282 no rank 0 0 species 5282 Coriobacteriaceae bacterium 68-1-3 1531429 1 4 84995 class 0 11653 11653 0 1 order 84996 4 64 Rubrobacterales 11589 0 family 84997 3 genus 1 0 11589 4 Rubrobacter 3 42255 Rubrobacter xylanophilus 1 49319 species 0 6371 Rubrobacter radiotolerans 42256 1 0 species 5214 1859062 1 0 no rank 647 647 0 genus 262406 1 1 166501 Thermobaculum terrenum 647 species 0 clade 0 120039 120 1798711 0 phylum 120039 1117 120 2923 0 order 52604 3 1890498 2 0 family 828 102115 2 828 0 genus 1 102116 Stanieria cyanosphaera 824 species 0 0 no rank 4 2642663 1 species 0 4 Stanieria sp. NIES-3757 1 1807358 2095 family 0 1 1890500 1 44474 2095 genus 0 species 0 2095 Pleurocapsa minor 1 54308 subclass 0 29398 32 1301283 Oscillatoriales 6 1150 14 0 1 order 18324 Coleofasciculaceae 72 1892251 3 0 1 family 2668 genus 1 0 2596 Geitlerinema 1 2 63132 2595 0 no rank 2648775 1 2595 0 species 1173025 1 Geitlerinema sp. PCC 7407 11526 family 0 1 5 1892254 Oscillatoriaceae 11 2 Oscillatoria 1158 3 1 0 genus 3486 1996 0 species 482564 1 Oscillatoria nigro-viridis 1488 0 species 118323 1 Oscillatoria acuminata 8029 0 genus 1155738 1 1 1155739 Moorea producens 8029 species 0 0 family 3276 1892249 2 3276 1 0 genus 43988 2 6 Cyanothece 0 no rank 3270 2649277 1 3270 0 species 395961 1 Cyanothece sp. PCC 7425 0 family 13 1892255 1 13 0 genus 241421 1 13 species 0 1 241425 Crinalium epipsammum 835 0 family 1892252 2 1 1205 356 genus 0 356 species 0 1 1206 Trichodesmium erythraeum 1 44471 479 genus 0 479 0 no rank 2642155 1 479 0 species 1173027 1 Microcoleus sp. PCC 7113 0 1 order 11074 1318 Chroococcales 1118 18 8 1890450 1 Aphanothecaceae 4543 family 0 1 1 1453359 595 genus 0 713887 1 Candidatus Atelocyanobacterium thalassa 595 0 species 28070 2 1959 0 genus 0 species 463 2546356 1 65393 1 Cyanothece sp. PCC 7424 463 0 strain 2546359 1 1496 0 species 1 497965 Cyanothece sp. PCC 7822 1496 strain 0 1 92682 1546 no rank 0 genus 0 1546 1 76023 2632878 1 0 no rank 1546 1546 0 species 65093 1 Halothece sp. PCC 7418 2546365 2 403 0 genus 403 species 0 2 2546366 52 strain 0 1 395962 Cyanothece sp. PCC 8802 strain 0 351 Cyanothece sp. PCC 8801 1 41431 263510 1 0 genus 39 39 0 species 2546360 1 1 43989 Cyanothece sp. ATCC 51142 39 strain 0 1890449 2 0 family 2089 2 1125 2089 genus 0 no rank 0 42 1 2643300 Microcystis sp. MC19 1 1967666 species 0 42 Microcystis aeruginosa 1 1126 species 0 2047 5 1890464 1448 family 0 3 669357 297 Geminocystis 323 genus 0 1 26 no rank 0 2 2625037 species 0 6 Geminocystis sp. NIES-3709 1 1617448 1 1615909 Geminocystis sp. NIES-3708 20 species 0 268175 1 270 0 genus 270 0 no rank 2648896 1 270 species 0 1 2005460 Chondrocystis sp. NIES-4102 0 genus 855 102231 1 855 0 no rank 2623012 1 855 species 0 1 1173026 Gloeocapsa sp. PCC 7428 2 1890452 1676 family 0 0 1 genus 1676 Cyanobacterium 1 102234 2 Cyanobacterium aponinum 379064 1 0 species 1675 62 no rank 0 1 1983111 62 0 species 718217 1 cyanobacterium endosymbiont of Epithemia turgida 1715 Synechococcales 46 1890424 order 1 0 46410 1890436 1 0 family 12 1152 1 0 genus 12 0 no rank 12 2593292 1 82654 1 Pseudanabaena sp. PCC 7367 12 0 species 26 family 0 1 1890429 26 0 genus 155977 1 0 species 26 Acaryochloris marina 155978 1 1890438 4 5790 0 family 47251 4 0 genus 5790 no rank 0 4996 3 2650499 75 species 0 1 1752064 Leptolyngbya sp. NIES-3755 1080068 1 Leptolyngbya sp. O-77 4244 0 species Leptolyngbya sp. PCC 7376 111781 1 0 species 677 794 species 0 1 1184 Leptolyngbya boryana 0 family 318 1890428 3 318 0 genus 1142 3 2640012 3 0 no rank 318 1 1147 Synechocystis sp. PCC 6714 268 species 0 25 species 0 1 1148 Synechocystis sp. PCC 6803 25 species 0 1 2116702 Synechocystis sp. IPPAS B-1465 2303730 1 0 family 1212 170610 1 0 genus 1212 1212 0 species 1209493 1 Halomicronema hongdechloris 1148 0 family 1213 4 2 Prochlorococcus 1218 4 0 1 genus 1148 2627481 2 0 no rank 101 Prochlorococcus sp. MIT 0801 1501269 1 0 species 80 species 0 21 Prochlorococcus sp. MIT 0604 1 1501268 0 species 1045 Prochlorococcus marinus 1219 1 family 0 1 36189 454 Synechococcaceae 31 1890426 genus 0 1536 1 13034 0 species 1536 Dactylococcopsis salina 292566 1 genus 0 9499 2 167375 2627006 1 4698 0 no rank Cyanobium sp. NIES-981 1 1851505 species 0 4698 Cyanobium gracile 59930 1 0 species 4801 1129 26 769 Synechococcus 24258 0 1 genus Synechococcus lividus 1 33070 species 0 43 263 0 species 32046 1 Synechococcus elongatus 23 2626047 no rank 0 23183 species 0 1397 Synechococcus sp. WH 8102 1 84588 Synechococcus sp. WH 8103 29410 1 0 species 1362 0 species 735 Synechococcus sp. UTEX 2973 1350461 1 1 110662 Synechococcus sp. CC9605 459 species 0 Synechococcus sp. WH 7803 32051 1 0 species 1983 0 species 1692 Synechococcus sp. KORDI-100 1280380 1 0 species 308 Synechococcus sp. PCC 73109 374982 1 1 32049 Synechococcus sp. PCC 7002 614 species 0 1 321327 Synechococcus sp. JA-3-3Ab 3098 species 0 462 0 species 166314 1 Synechococcus sp. WH 8109 0 species 1376 Synechococcus sp. PCC 7003 374981 1 Synechococcus sp. NIES-970 1827144 1 0 species 7 12 species 0 1 195253 Synechococcus sp. PCC 6312 species 0 1538 Synechococcus sp. JA-2-3B'a(2-13) 1 321332 Synechococcus sp. PCC 7502 1 1173263 species 0 69 Synechococcus sp. KORDI-52 1 585425 species 0 1366 1 316279 Synechococcus sp. CC9902 561 species 0 Synechococcus sp. PCC 8807 195248 1 0 species 473 3095 0 species 1916956 1 Synechococcus sp. SynAce01 species 0 557 Synechococcus sp. PCC 7117 1 195498 Synechococcus sp. CC9311 64471 1 0 species 8 0 species 1424 Synechococcus sp. KORDI-49 585423 1 species 0 587 Synechococcus sp. RCC307 1 316278 146785 1 442 0 genus 442 0 species 146786 1 Thermosynechococcus elongatus 1890505 1 0 order 951 1890528 1 951 0 family 54298 1 951 0 genus Chroococcidiopsis thermalis 1 54299 species 0 951 0 1 order 24222 1 Nostocales 1161 31 family 0 382 1 1892263 1190 1 382 0 genus 382 0 no rank 494603 1 Fischerella sp. NIES-3754 1 1752063 species 0 382 2 1185 Rivulariaceae 2 1204 family 0 1 1 373984 genus 0 1202 1 2676603 no rank 0 1202 Rivularia sp. PCC 7116 1 373994 species 0 1202 0 family 6881 2661849 8 Calothrix 10 1186 8 1 0 genus 6881 6822 0 no rank 2619626 6 Calothrix sp. NIES-4101 1 2005461 species 0 3432 1954171 1 Calothrix sp. NIES-2098 1030 0 species 1337936 1 Calothrix sp. 336/3 35 0 species Calothrix sp. NIES-3974 2005462 1 0 species 29 1 2005469 Calothrix sp. NIES-4071 911 species 0 99598 1 Calothrix sp. PCC 7507 1385 0 species 32054 1 Calothrix parietina 49 0 species family 0 1 14270 2 Nostocaceae 18 1162 10520 0 1 genus 1177 10 19 Nostoc 9519 0 no rank 2593658 7 2810 0 species 1751286 1 Nostoc sp. NIES-3756 Nostoc sp. PCC 7120 103690 1 0 species 915 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1261031 1 0 species 954 Nostoc sp. PCC 7524 1 28072 species 0 935 species 0 160 Nostoc sp. PCC 7107 1 317936 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1 1618022 species 0 2664 species 0 1081 Nostoc sp. CENA543 1 1869241 1 272131 Nostoc punctiforme 38 species 0 1306274 1 Nostoc flagelliforme 944 0 species 318 0 1 genus 264688 3 2 Trichormus 0 species 246 Trichormus variabilis 264691 1 Trichormus azollae 1164 1 0 species 70 3430 genus 1 0 4 1163 18 Anabaena 2051 0 no rank 2619674 2 46234 1 Anabaena sp. 90 610 0 species 1647413 1 Anabaena sp. WA102 1441 0 species 0 species 1361 Anabaena cylindrica 1165 1 1484 0 no rank 1219117 1 1 1940762 Nostocales cyanobacterium HT-58-2 1484 species 0 3 Gloeobacteria 6 307596 class 0 1 16073 order 0 1 16070 Gloeobacterales 7 5 307595 1 0 family 16063 Gloeobacteraceae 157 1890422 4 3 33071 Gloeobacter 36 15906 genus 1 0 1 1416614 Gloeobacter kilaueensis 8635 species 0 7235 0 species 33072 1 Gloeobacter violaceus phylum 0 4291 3 67819 3 1663419 Fimbriimonadia 1 4291 class 0 1 1663425 2 0 order 4290 2 1663426 1 Fimbriimonadaceae 4290 family 1 0 0 genus 4289 1005038 1 4289 0 species 1005039 1 Fimbriimonas ginsengisoli 605 1239 5 Firmicutes 304825 phylum 0 1 1363 class 0 8 1737404 no rank 0 2 1 1737407 genus 0 2 1 1582879 2 0 species 1852374 1 Ezakiella massiliensis 7 1737405 1361 order 0 1570339 6 0 family 1199 genus 0 4 1 150022 Finegoldia magna 1260 1 0 species 4 371 0 genus 543311 1 371 species 0 1 33033 Parvimonas micra 813 genus 0 1 1161127 1 1852373 Murdochiella vaginalis 813 species 0 6 0 genus 165779 2 2 0 species 1870984 1 Anaerococcus mediterraneensis species 0 4 Anaerococcus prevotii 1 33034 0 genus 5 162289 1 1 2637196 5 no rank 0 species 0 5 Peptoniphilus sp. ING2-D1G 1 1912856 0 family 162 2042895 1 1 1505664 genus 0 162 1 1556 Gottschalkia acidurici 162 species 0 5 526524 2507 class 0 2507 0 order 526525 5 5 128827 family 0 2507 0 genus 742 1647 2 0 species 8 Erysipelothrix rhusiopathiae 1648 1 1 1514105 Erysipelothrix larvae 734 species 0 1729679 1 0 genus 638 1702221 1 Faecalibaculum rodentium 638 0 species 415 genus 0 1 191303 no rank 0 415 1 2638206 1 1712675 Turicibacter sp. H121 415 species 0 544447 1 712 0 no rank Erysipelotrichaceae bacterium I46 1834207 1 0 species 712 909932 18 0 class 18181 2284 0 order 1843489 5 2284 family 0 5 31977 39948 1 2 0 genus 2 0 species 39950 1 Dialister pneumosintes 0 genus 785 906 1 species 0 785 Megasphaera elsdenii 1 907 339 0 genus 29465 2 1 248315 Veillonella rodentium 335 species 0 1 29466 Veillonella parvula 4 species 0 909928 1 1158 0 genus 0 species 1158 Negativicoccus massiliensis 1702287 1 14128 1 0 order 909929 11 Selenomonadales 3 1 0 family 11709 8 Selenomonadaceae 1843491 8 5 genus 0 1 158846 0 species 5 Megamonas hypermegale 158847 1 11696 genus 0 1 6 970 Selenomonas 15 2637378 3 7797 0 no rank species 0 1584 Selenomonas sp. oral taxon 478 1 712538 1 1884263 Selenomonas sp. oral taxon 920 2983 species 0 Selenomonas sp. oral taxon 136 1 713030 species 0 3230 573 0 species 971 1 Selenomonas ruminantium Selenomonas sputigena 69823 1 0 species 3311 0 family 2416 1843490 2 2 365348 genus 0 2416 1 365349 Pelosinus fermentans 1574 species 0 0 no rank 842 2629460 1 Pelosinus sp. UFO1 484770 1 0 species 842 1769 order 0 2 1843488 1769 0 family 909930 2 0 genus 1769 904 2 Acidaminococcus intestini 1 187327 species 0 24 1745 0 species 905 1 Acidaminococcus fermentans 40 Clostridia 186801 176 1 0 class 110334 order 0 10 1 485256 family 0 10 1 485255 10 genus 0 1 375928 Natranaerobius thermophilus 375929 1 0 species 10 12961 0 1 order 68295 32 Thermoanaerobacterales 3 3136 family 1 0 12 543371 Thermoanaerobacterales Family III. Incertae Sedis 12 1407 genus 0 2 28895 1 1517 Thermoanaerobacterium thermosaccharolyticum 77 species 0 0 species 1330 Thermoanaerobacterium xylanolyticum 29329 1 Caldicellulosiruptor 1 9 44000 genus 1 0 1717 Caldicellulosiruptor kronotskyensis 413889 1 0 species 10 19 0 species 52765 1 Caldicellulosiruptor kristjanssonii Caldicellulosiruptor bescii 1 31899 species 0 360 1 44001 Caldicellulosiruptor saccharolyticus 8 species 0 Caldicellulosiruptor obsidiansis 1 717609 species 0 4 1151 species 0 1 413888 Caldicellulosiruptor hydrothermalis Caldicellulosiruptor owensensis 1 55205 species 0 9 1 52766 Caldicellulosiruptor lactoaceticus 155 species 0 0 1 family 9053 Thermoanaerobacteraceae 13 186814 16 1 129957 473 genus 0 Carboxydothermus hydrogenoformans 129958 1 0 species 473 14 Thermoanaerobacter 9 1754 genus 0 1 2675 617 0 no rank 2636821 2 308 0 species 399726 1 Thermoanaerobacter sp. X514 Thermoanaerobacter sp. X513 573062 1 0 species 309 108150 1 Thermoanaerobacter italicus 348 0 species species 0 307 Thermoanaerobacter wiegelii 1 46354 29323 1 Thermoanaerobacter brockii 520 0 species 2 0 species 2325 1 Thermoanaerobacter kivui Thermoanaerobacter pseudethanolicus 496866 1 0 species 520 347 0 species 583357 1 Thermoanaerobacter mathranii no rank 0 4721 3 42857 42837 1 0 genus 588 Ammonifex degensii 1 42838 species 0 588 Moorella 2 44260 2 0 1 genus 4133 1 1525 Moorella thermoacetica 4131 species 0 126 0 genus 249529 1 1 911092 Caldanaerobacter subterraneus 126 species 0 0 genus 1045 140458 1 1 85874 Thermacetogenium phaeum 1045 species 0 family 0 761 2 227387 761 0 1 genus 227388 2 Thermodesulfobium 1 Thermodesulfobium narugense 1 184064 species 0 760 1 543372 8 family 0 1 252965 8 genus 0 8 species 0 1 252966 Mahella australiensis 8 53433 1559 order 0 53434 3 1139 0 family 57 0 1 genus 28186 2 Acetohalobium 1 Acetohalobium arabaticum 1 28187 species 0 56 42417 1 0 genus 1082 1082 species 0 1 42422 Halobacteroides halobius 5 972 family 0 420 16 Halothermothrix 32636 2 1 0 genus 326 310 species 0 1 31909 Halothermothrix orenii Halanaerobium 1 2330 3 1 0 genus 94 Halanaerobium praevalens 2331 1 0 species 27 species 0 66 Halanaerobium hydrogeniformans 1 656519 2770089 3 0 order 256 2 2770093 family 0 245 genus 1 0 245 1 Thermosediminibacter 2 291988 244 0 species 291990 1 Thermosediminibacter oceani 1 2770092 11 family 0 11 0 genus 499228 1 0 species 11 Tepidanaerobacter acetatoxydans 499229 1 Clostridiales 123 131 186802 order 0 1 95508 538999 7 14226 0 no rank 0 genus 636 2717089 1 2086584 1 Mordavella sp. Marseille-P3756 636 0 species family 0 593 2 543314 1 86331 585 genus 0 0 species 585 Mogibacterium diversum 114527 1 8 0 species 143393 1 [Eubacterium] sulci 539000 3 2 Clostridiales Family XVII. Incertae Sedis 7785 1 0 family 6 Thermaerobacter 2 73918 genus 1 0 7783 0 species 7777 Thermaerobacter marianensis 73919 1 1 1392389 genus 0 5212 1 1297617 Intestinimonas butyriciproducens 5212 species 0 1 0 family 8133 255 Symbiobacteriaceae 543349 3 7878 1 0 genus 2733 2 Symbiobacterium 3 1 2734 Symbiobacterium thermophilum 7875 species 0 0 family 2586 186806 3 1 33951 genus 0 740 species 0 740 Acetobacterium woodii 1 33952 1 0 genus 1846 Eubacterium 2 1730 2 Eubacterium limosum 1 1736 species 0 1844 1 216572 230 family 0 459786 1 230 0 genus 1 351091 Oscillibacter valericigenes 230 species 0 2 68298 family 0 297 38 0 genus 129001 1 Syntrophothermus lipocalidus 86170 1 0 species 38 259 0 genus 862 1 1 863 Syntrophomonas wolfei 259 species 0 family 0 397 2 990719 genus 1 0 397 Christensenella 15 2 990721 1805714 1 Christensenella massiliensis 382 0 species 186804 7 1627 0 family genus 0 210 1 44259 species 0 210 Filifactor alocis 1 143361 0 no rank 34 1411023 1 species 0 34 Peptostreptococcaceae bacterium oral taxon 929 1 2081703 genus 0 199 1 1870884 199 species 0 1 1496 Clostridioides difficile 0 genus 212 186831 1 0 species 212 Acetoanaerobium sticklandii 1511 1 1481960 2 Peptoclostridium 9 930 1 0 genus 1 1731 Peptoclostridium acidaminophilum 921 species 0 42 0 genus 1849828 1 1505 1 Paeniclostridium sordellii 42 0 species Peptococcaceae 247 27 186807 family 0 1 20508 genus 0 7607 3 79206 0 species 550 Desulfosporosinus orientis 1563 1 Desulfosporosinus acidiphilus 1 885581 species 0 963 79209 1 Desulfosporosinus meridiei 6094 0 species 5 36853 Desulfitobacterium 2 1028 genus 0 1 550 species 0 1 49338 Desulfitobacterium hafniense 142 0 species 36854 1 Desulfitobacterium dehalogenans species 0 11 Desulfitobacterium dichloroeliminans 1 233055 323 species 0 1 142877 Desulfitobacterium metallireducens genus 1 0 2971 279 Desulfotomaculum 5 1562 0 species 870 Desulfotomaculum nigrificans 1565 1 Desulfotomaculum reducens 59610 1 0 species 353 Desulfotomaculum ruminis 1 1564 species 0 1031 0 species 438 Desulfotomaculum ferrireducens 1833852 1 4149 0 1 genus 471826 2 1 Candidatus Desulforudis 4148 0 species 471827 1 Candidatus Desulforudis audaxviator 1 Thermincola 2 278993 genus 0 1 581 580 species 0 1 863643 Thermincola potens 4 56112 Dehalobacter 2 1151 genus 1 0 1 55583 Dehalobacter restrictus 37 species 0 no rank 0 1112 2 2635733 557 0 species 1131462 1 Dehalobacter sp. CF 555 species 0 1 1147129 Dehalobacter sp. DCA 1 2282740 genus 0 1186 0 species 1186 Desulfotomaculum gibsoniae 102134 1 Dehalobacterium 1 51514 2 1 0 genus 256 Dehalobacterium formicoaceticum 1 51515 species 0 255 0 genus 1061 2282742 1 Desulfotomaculum acetoxidans 1 58138 species 0 1061 1 51196 271 genus 0 271 0 species 51197 1 Syntrophobotulus glycolicus 1 31984 3176 family 0 1 2697 3176 genus 0 3176 species 0 1 35701 Heliobacterium modesticaldum family 0 1 15160 Ruminococcaceae 3 10 541000 2638 0 genus 1263 2 1 1264 Ruminococcus albus 667 species 0 1971 0 species 1160721 1 Ruminococcus bicirculans 988 no rank 0 1 2305133 1 1572656 Ruminococcaceae bacterium CPB6 988 species 0 genus 1 0 2947 1 Ethanoligenens 2 253238 2946 species 0 1 253239 Ethanoligenens harbinense 6626 0 genus 946234 1 Flavonifractor plautii 1 292800 species 0 6626 2 216851 1 Faecalibacterium 1953 genus 0 1 853 1 Faecalibacterium prausnitzii 1952 0 species 5 no rank 0 1 552397 species 0 5 [Clostridium] cellulosi 1 29343 Lachnospiraceae 5 21 186803 family 1 0 8324 genus 0 416 2 572511 Blautia hansenii 1 1322 species 0 310 2648079 1 0 no rank 106 106 species 0 1 1796616 Blautia sp. YL58 2 186928 2782 no rank 0 1 712991 Lachnospiraceae bacterium oral taxon 500 1461 species 0 1321 0 species 39491 1 [Eubacterium] rectale 698776 1 0 genus 7 species 0 7 Cellulosilyticum lentocellum 1 29360 2719231 1 179 0 genus [Clostridium] saccharolyticum 1 84030 species 0 179 7 genus 0 1 207244 species 0 7 Anaerostipes hadrus 1 649756 0 1 genus 3139 1 Butyrivibrio 830 3 Butyrivibrio hungatei 1 185008 species 0 557 1 43305 Butyrivibrio proteoclasticus 2581 species 0 0 genus 326 841 1 326 species 0 1 301301 Roseburia hominis 48 genus 0 1 2569097 39488 1 [Eubacterium] hallii 48 0 species 1 1663717 genus 0 6 Herbinix luporum 1 1679721 species 0 6 2719313 1 0 genus 162 1 208479 [Clostridium] bolteae 162 species 0 1 2039240 31 genus 0 species 0 31 Anaerotignum propionicum 1 28446 1 0 genus 1214 Lachnoclostridium 2 1506553 4 Lachnoclostridium phocaeense 1 1871021 species 0 729 447 0 no rank 2608895 1 Lachnoclostridium sp. YL32 1 1834196 species 0 447 36 species 0 1 66219 Lachnoclostridium phytofermentans genus 0 2 1 28050 species 0 2 [Eubacterium] eligens 1 39485 0 family 16333 31979 36 17 genus 0 3 49082 no rank 0 17 3 2638829 6 species 0 1 1508644 Candidatus Arthromitus sp. SFB-mouse-NL 49118 1 Candidatus Arthromitus sp. SFB-mouse 7 0 species Candidatus Arthromitus sp. SFB-rat-Yit 1 1041504 species 0 4 3 Clostridium 30 1485 genus 1 0 15136 0 species 6 Clostridium bornimense 1216932 1 343 species 0 1 36745 Clostridium saccharoperbutylacetonicum 1 1497 Clostridium formicaceticum 1148 species 0 102 0 species 29341 1 Clostridium argentinense species 0 550 Clostridium pasteurianum 1 1501 1 1492 Clostridium butyricum 387 species 0 1542 1 Clostridium novyi 7 0 species Clostridium estertheticum 238834 1 0 species 1391 Clostridium acetobutylicum 1 1488 species 0 9 4 species 0 1 1494 Clostridium cochlearium Clostridium baratii 1 1561 species 0 17 Clostridium beijerinckii 1520 1 0 species 271 210 0 species 1538 1 Clostridium ljungdahlii species 0 16 Clostridium tyrobutyricum 1 1519 38 0 species 46867 1 Clostridium chauvoei Clostridium sporogenes 1 1509 species 0 1314 species 0 1081 Clostridium kluyveri 1 1534 1 1502 Clostridium perfringens 22 species 0 18 species 0 1 1513 Clostridium tetani Clostridium saccharobutylicum 1 169679 species 0 11 84022 1 Clostridium aceticum 1488 0 species 211 species 0 1 84023 Clostridium autoethanogenum 5599 0 species 1491 1 Clostridium botulinum 172 species 0 1 394958 Clostridium taeniosporum no rank 0 148 2 2614128 Clostridium sp. BNL1100 1 755731 species 0 9 Clostridium sp. SY8519 1042156 1 0 species 139 1 1493 Clostridium cellulovorans 6 species 0 114 species 0 1 1548 Clostridium scatologenes 450 species 0 1 217159 Clostridium carboxidivorans 390805 1 607 0 genus Geosporobacter ferrireducens 1 1424294 species 0 607 0 genus 573 114627 2 species 0 567 Alkaliphilus metalliredigens 1 208226 0 species 6 Alkaliphilus oremlandii 461876 1 10 2304686 4388 family 0 0 genus 464 1637257 1 464 0 species 884684 1 Mageeibacillus indolicus 881 0 genus 2304691 1 881 species 0 1 1510 [Clostridium] stercorarium 0 genus 571 2304693 1 0 species 571 [Clostridium] thermosuccinogenes 84032 1 4 0 1 genus 1508657 2 1 Ruminiclostridium 3 species 0 1 1521 [Clostridium] cellulolyticum 2305130 1 1025 0 no rank Ruminiclostridium sp. KB18 1 1834198 species 0 1025 1 236752 4 genus 0 1 236753 Fastidiosipila sanguinis 4 species 0 genus 0 1439 3 2304692 288965 1 [Clostridium] clariflavum 785 0 species Herbivorax saccincola 1 1677857 species 0 626 0 species 28 Ruminiclostridium thermocellum 1515 1 84086 1 0 no rank 5 species 0 5 endosymbiont 'TC1' of Trimyema compressum 1 243899 33974 1 843 0 no rank 1930845 1 0 genus 843 843 0 species 1871025 1 Ndongobacter massiliensis 4931 class 1 0 5 1676648 Limnochordia 2 0 1 order 4929 3 Limnochordales 1676649 4 1676650 3 3 Limnochordaceae 4926 0 1 family Limnochorda 73 2 1676651 genus 1 0 4923 1555112 1 Limnochorda pilosa 4850 0 species class 1 0 166656 Bacilli 33 390 91061 148 186826 3 Lactobacillales 23592 order 1 0 1563 0 family 186828 7 0 genus 1003 2747 3 257487 2 0 no rank 997 Carnobacterium sp. 17-4 208596 1 0 species 1 species 0 996 Carnobacterium sp. CP1 1 1564681 Carnobacterium maltaromaticum 2751 1 0 species 6 548 0 genus 191769 1 1 2632303 548 no rank 0 0 species 548 Marinilactibacillus sp. 15R 1911586 1 12 genus 0 1 3 1470540 Jeotgalibaca 1 species 0 3 Jeotgalibaca dankookensis 1 708126 no rank 0 8 1 2621505 8 species 0 1 1903686 Jeotgalibaca sp. PTS2502 0 family 1640 81850 14 genus 0 677 5 46255 9 0 species 1631871 1 Weissella jogaejeotgali species 0 326 Weissella cibaria 1 137591 species 0 7 Weissella ceti 1 759620 0 species 332 Weissella paramesenteroides 1249 1 species 0 3 Weissella koreensis 1 165096 0 genus 937 1243 8 no rank 0 5 1 2685106 Leuconostoc sp. C2 979982 1 0 species 5 1 33964 Leuconostoc citreum 630 species 0 3 species 0 1 255248 Leuconostoc garlicum Leuconostoc carnosum 1 1252 species 0 270 4 0 species 1244 1 Leuconostoc gelidum 0 species 12 Leuconostoc kimchii 136609 1 Leuconostoc mesenteroides 1245 1 0 species 8 5 0 species 1246 1 Leuconostoc lactis 0 genus 26 46254 1 species 0 26 Oenococcus oeni 1 1247 0 family 1678 186827 7 0 1 genus 1678 Aerococcus 241 1375 7 species 0 1006 Aerococcus christensenii 1 87541 16 species 0 1 119206 Aerococcus sanguinicola Aerococcus urinae 1 1376 species 0 5 1 1377 Aerococcus viridans 3 species 0 2 species 0 1 128944 Aerococcus urinaehominis Aerococcus urinaeequi 51665 1 0 species 405 4 no rank 0 1 263855 0 species 4 Lactobacillales bacterium 1993866 1 81852 16 678 0 family 51668 1 0 genus 18 18 0 species 51669 1 Tetragenococcus halophilus 2 0 genus 2737 2 Vagococcus penaei 633807 1 0 species 1 1 0 species 519472 1 Vagococcus teuberi 313 genus 0 1 33969 0 species 313 Melissococcus plutonius 33970 1 12 1350 Enterococcus 56 345 genus 0 1 10 species 0 1 1354 Enterococcus hirae 0 no rank 23 2608891 3 1 2060306 Enterococcus sp. FDAARGOS_163 7 species 0 0 species 8 Enterococcus sp. FDAARGOS_375 2060307 1 species 0 8 Enterococcus sp. CR-Ec1 1 2057791 15 species 0 1 1351 Enterococcus faecalis 0 species 2 Enterococcus mundtii 53346 1 Enterococcus casseliflavus 37734 1 0 species 5 5 species 0 1 2005703 Enterococcus wangshanyuanii Enterococcus faecium 1 1352 species 0 15 417368 1 Enterococcus thailandicus 7 0 species 207 0 species 53345 1 Enterococcus durans 33958 57 Lactobacillaceae 1 9608 0 1 family 2767842 3 1057 0 genus 1026 0 species 1589 1 Lactobacillus pentosus 7 species 0 1 60520 Lactobacillus paraplantarum Lactobacillus plantarum 1 1590 species 0 24 genus 0 16 2 2767881 4 0 species 53444 1 Lactobacillus lindneri 12 0 species 1625 1 Lactobacillus sanfranciscensis 1678 genus 0 3 2767886 0 species 147 Lactobacillus brevis 1580 1 0 species 902 Lactobacillus zymae 267363 1 629 species 0 1 637971 Lactobacillus koreensis genus 0 55 4 2767887 0 species 3 Lactobacillus acidipiscis 89059 1 34 0 species 1624 1 Lactobacillus salivarius 1 species 0 1 1601 Lactobacillus agilis 1 1623 Lactobacillus ruminis 17 species 0 genus 0 3 1 2767877 3 0 species 148814 1 Lactobacillus kunkeei 0 genus 8 2767892 1 240427 1 Lactobacillus paracollinoides 8 0 species 2767876 1 114 0 genus 1603 1 Lactobacillus amylophilus 114 0 species 121 0 genus 2759736 3 10 0 species 47715 1 Lactobacillus rhamnosus 74 species 0 1 1582 Lactobacillus casei 37 0 species 1597 1 Lactobacillus paracasei 1 genus 0 1 2767890 1 species 0 1 1193095 Lactobacillus hokkaidonensis 0 genus 14 2767885 2 1 1599 Lactobacillus sakei 4 species 0 10 0 species 28038 1 Lactobacillus curvatus 2742598 3 0 genus 2824 Lactobacillus reuteri 1598 1 0 species 11 1613 1 Lactobacillus fermentum 2746 0 species 97478 1 Lactobacillus mucosae 67 0 species 0 genus 32 2767879 6 15 species 0 1 392416 Lactobacillus crustorum Lactobacillus allii 1 1847728 species 0 8 species 0 3 Lactobacillus heilongjiangensis 1 1074467 0 species 2 Lactobacillus alimentarius 1602 1 Lactobacillus farciminis 1612 1 0 species 2 species 0 2 Lactobacillus ginsenosidimutans 1 1007676 genus 0 10 2 2767889 0 species 2 Lactobacillus backii 375175 1 Lactobacillus coryniformis 1 1610 species 0 8 0 1 genus 2864 Lactobacillus 256 1578 16 species 0 13 Lactobacillus amylovorus 1 1604 1 1584 Lactobacillus delbrueckii 854 species 0 Lactobacillus acidophilus 1 1579 species 0 4 0 no rank 338 2620435 4 species 0 5 Lactobacillus sp. D1501 1 2108362 species 0 8 Lactobacillus sp. CBA3606 1 2099789 314 0 species 1545702 1 Lactobacillus sp. wkB8 Lactobacillus sp. CBA3605 1 2099788 species 0 11 species 0 42 Lactobacillus kefiranofaciens 1 267818 52242 1 Lactobacillus gallinarum 1 0 species Lactobacillus amylolyticus 83683 1 0 species 15 species 0 3 Lactobacillus gasseri 1 1596 15 species 0 1 1587 Lactobacillus helveticus Lactobacillus johnsonii 33959 1 0 species 1030 species 0 291 Lactobacillus acetotolerans 1 1600 Lactobacillus jensenii 1 109790 species 0 2 2767893 3 0 genus 727 1581 1 Lactobacillus buchneri 719 0 species 1 species 0 1 1138822 Lactobacillus curieae 7 0 species 152331 1 Lactobacillus parabuchneri 1253 5 83 0 genus Pediococcus damnosus 51663 1 0 species 5 Pediococcus inopinatus 114090 1 0 species 6 1 1670797 65 species group 0 1 1254 Pediococcus acidilactici 65 species 0 187452 1 Pediococcus claussenii 4 0 species 1 1255 Pediococcus pentosaceus 3 species 0 0 family 8418 1300 45 genus 0 1 8164 Streptococcus 2 41 1301 Streptococcus pseudopneumoniae 1 257758 species 0 8 175 0 species 1318 1 Streptococcus parasanguinis 0 species 9 Streptococcus merionis 400065 1 3 671232 species group 0 934 Streptococcus anginosus 1328 1 0 species 867 1 1338 Streptococcus intermedius 64 species 0 0 species 3 Streptococcus constellatus 76860 1 Streptococcus iniae 1346 1 0 species 20 6 2608887 1501 no rank 0 0 species 563 Streptococcus sp. oral taxon 431 712633 1 Streptococcus sp. I-G2 1 1156431 species 0 406 species 0 125 Streptococcus sp. 'group B' 1 1319 405 0 species 1156433 1 Streptococcus sp. I-P16 0 species 1 Streptococcus sp. A12 1759399 1 1839799 1 Streptococcus sp. FDAARGOS_192 1 0 species 1314 1 Streptococcus pyogenes 6 0 species 197614 1 Streptococcus pasteurianus 5 0 species species 0 2617 Streptococcus suis 1 1307 Streptococcus pantholopis 1811193 1 0 species 17 1 1309 Streptococcus mutans 1 species 0 17 0 species 1303 1 Streptococcus oralis 315405 1 Streptococcus gallolyticus 3 0 species species 0 8 Streptococcus gordonii 1 1302 1349 1 Streptococcus uberis 2 0 species 0 species 3 Streptococcus acidominimus 1326 1 species 0 6 Streptococcus marmotae 1 1825069 1814128 1 Streptococcus halotolerans 51 0 species 2 0 species 102684 1 Streptococcus infantarius 1 1311 Streptococcus agalactiae 132 species 0 Streptococcus pneumoniae 1313 1 0 species 240 Streptococcus lutetiensis 150055 1 0 species 1 4 species 0 1 45634 Streptococcus cristatus 1 28037 Streptococcus mitis 809 species 0 1348 1 Streptococcus parauberis 2 0 species Streptococcus pluranimalium 1 82348 species 0 6 species 0 6 Streptococcus equinus 1 1335 species 0 2 Streptococcus sanguinis 1 1305 111 species 0 1 1888195 Streptococcus himalayensis 412 species group 0 2 119603 8 0 species 1334 1 Streptococcus dysgalactiae Streptococcus equi 1 1336 species 0 404 1 1308 Streptococcus thermophilus 422 species 0 0 species 630 Streptococcus salivarius 1304 1 0 genus 254 1357 4 Lactococcus lactis 1 1358 species 0 103 0 species 49 Lactococcus piscium 1364 1 1 1366 Lactococcus raffinolactis 6 species 0 Lactococcus garvieae 1363 1 0 species 96 order 0 1 143031 898 Bacillales 241 1385 19088 family 0 1 8 186823 2 Alicyclobacillaceae 8041 1 0 genus 29330 2 Alicyclobacillus 60 405212 1 Alicyclobacillus acidocaldarius 7981 0 species Tumebacillus 1 3 432330 genus 0 1 7205 1 1214604 Tumebacillus algifaecis 1552 species 0 Tumebacillus avium 1 1903704 species 0 5652 0 genus 3840 1129704 2 0 species 1145 Kyrpidia sp. EA-1 2055160 1 Kyrpidia tusciae 1 33943 species 0 2695 131 0 family 186824 1 genus 0 131 1 1677050 Novibacillus thermophilus 1 1471761 species 0 131 539002 8 0 no rank 610 9 no rank 0 1 539738 1378 1 9 0 genus 0 no rank 9 2624949 1 9 0 species 1785995 1 Gemella sp. oral taxon 928 539742 7 601 0 no rank Exiguobacterium 4 33986 7 1 0 genus 601 15 species 0 1 332410 Exiguobacterium sibiricum Exiguobacterium antarcticum 1 132920 species 0 15 4 2644629 no rank 0 567 Exiguobacterium sp. U13-1 1 1849031 species 0 1 1 species 0 1 1224749 Exiguobacterium sp. ZWU0009 Exiguobacterium sp. AT1b 1 360911 species 0 561 species 0 4 Exiguobacterium sp. MH3 1 1399115 Staphylococcaceae 1 90964 39 0 1 family 5207 10 0 genus 2005363 1 Auricoccus indicus 1 1849491 species 0 10 3 69965 534 genus 0 1 1855823 Macrococcus canis 525 species 0 69966 1 Macrococcus caseolyticus 3 0 species no rank 0 6 1 2619255 1898474 1 Macrococcus sp. IME1552 6 0 species 2053 genus 0 1 45669 0 species 2053 Salinicoccus halodurans 407035 1 Staphylococcus 1 33 1279 genus 0 1 2609 1295 1 Staphylococcus schleiferi 2 0 species Staphylococcus piscifermentans 70258 1 0 species 59 12 0 species 1283 1 Staphylococcus haemolyticus 25 0 species 214473 1 Staphylococcus nepalensis Staphylococcus muscae 1294 1 0 species 17 species 0 4 Staphylococcus lutrae 1 155085 species 0 2 Staphylococcus capitis 1 29388 985002 1 Staphylococcus argenteus 2 0 species 11 species 0 1 1290 Staphylococcus hominis Staphylococcus condimenti 1 70255 species 0 12 species 0 5 Staphylococcus simiae 1 308354 Staphylococcus sciuri 1296 1 0 species 3 Staphylococcus pettenkoferi 170573 1 0 species 6 Staphylococcus equorum 246432 1 0 species 25 985762 1 Staphylococcus agnetis 5 0 species 283734 1 Staphylococcus pseudintermedius 2 0 species Staphylococcus cohnii 1 29382 species 0 72 1281 1 Staphylococcus carnosus 9 0 species 11 species 0 1 28035 Staphylococcus lugdunensis 726 species 0 1 1280 Staphylococcus aureus no rank 0 12 1 91994 0 species 12 Staphylococcus sp. AntiMn-1 1715860 1 1 643214 Staphylococcus stepanovicii 2 species 0 14 species 0 1 46127 Staphylococcus felis 1 species 0 1 1284 Staphylococcus hyicus Staphylococcus pasteuri 1 45972 species 0 12 666 0 species 1286 1 Staphylococcus simulans 1 1282 Staphylococcus epidermidis 6 species 0 1 29385 Staphylococcus saprophyticus 30 species 0 4 species 0 1 61015 Staphylococcus succinus 1292 1 Staphylococcus warneri 1 0 species 1 29384 Staphylococcus kloosii 4 species 0 1288 1 Staphylococcus xylosus 846 0 species 58902 0 1 family 186822 44 Paenibacillaceae 108 3 55080 genus 0 972 936 0 species 1465 1 Brevibacillus laterosporus 1 1393 Brevibacillus brevis 18 species 0 0 species 18 Brevibacillus formosus 54913 1 Paenibacillus 20 44249 36 0 1 genus 51707 159743 1 Paenibacillus terrae 155 0 species 365617 1 Paenibacillus sabinae 2686 0 species 172713 1 Paenibacillus kribbensis 572 0 species 1576 0 species 1126833 1 Paenibacillus beijingensis 1 162209 Paenibacillus naphthalenovorans 388 species 0 Paenibacillus durus 1 44251 species 0 2096 Paenibacillus odorifer 189426 1 0 species 320 Paenibacillus stellifer 169760 1 0 species 3826 2062 species 0 1 189425 Paenibacillus graminis 1 2044880 2778 species group 0 483937 1 Paenibacillus riograndensis 2778 0 species 1 1464 Paenibacillus larvae 13 species 0 species 0 404 Paenibacillus yonginensis 1 1462996 Paenibacillus bovis 1616788 1 0 species 18 128 species 0 1 1763538 Paenibacillus crassostreae Paenibacillus polymyxa 1 1406 species 0 1886 2455 species 0 1 528191 Paenibacillus xylanexedens Paenibacillus mucilaginosus 61624 1 0 species 7890 290 species 0 1 59893 Paenibacillus peoriae Paenibacillus swuensis 1178515 1 0 species 1305 1 1870820 Paenibacillus ihbetae 2015 species 0 414771 1 Paenibacillus donghaensis 2520 0 species 0 species 1832 Paenibacillus borealis 160799 1 14472 0 no rank 185978 13 Paenibacillus sp. FSL P4-0081 1536769 1 0 species 546 species 0 1488 Paenibacillus sp. lzh-N1 1 2069255 Paenibacillus sp. BIHB4019 1870819 1 0 species 2627 1536775 1 Paenibacillus sp. FSL H7-0737 1663 0 species 1 1536773 Paenibacillus sp. FSL R7-0331 839 species 0 Paenibacillus sp. FSL H7-0357 1 1536774 species 0 287 1536770 1 Paenibacillus sp. FSL R5-0345 16 0 species Paenibacillus sp. FSL R7-0273 1 1536772 species 0 703 species 0 252 Paenibacillus sp. JDR-2 1 324057 species 0 592 Paenibacillus sp. IHBB 10380 1 1566358 3758 0 species 1695218 1 Paenibacillus sp. 32O-W Paenibacillus sp. FSL R5-0912 1 1536771 species 0 202 481743 1 Paenibacillus sp. Y412MC10 1499 0 species 4964 genus 1 0 2 76632 1 Thermobacillus 4963 0 species 377615 1 Thermobacillus composti 1151 no rank 0 2 85151 55079 2 0 genus 1151 0 species 15 Aneurinibacillus soli 1500254 1 1 2642329 1136 no rank 0 Aneurinibacillus sp. XH2 1 1450761 species 0 1136 788 0 family 186820 7 6 genus 1 0 2 2755 Brochothrix 1 Brochothrix thermosphacta 1 2756 species 0 5 1637 5 782 0 genus species 0 2 Listeria innocua 1 1642 Listeria welshimeri 1643 1 0 species 110 103 0 species 1638 1 Listeria ivanovii 1640 1 Listeria seeligeri 6 0 species Listeria monocytogenes 1 1639 species 0 561 6063 0 family 186818 21 1 Planococcus 12 1372 genus 1 0 3846 192421 1 Planococcus maritimus 828 0 species Planococcus plakortidis 1 1038856 species 0 185 Planococcus rifietoensis 200991 1 0 species 36 2662419 2 931 0 no rank 1 1526927 Planococcus sp. PAMC 21323 404 species 0 Planococcus sp. MB-3u-03 1 2058136 species 0 527 Planococcus sp. L10.15 1302659 1 0 species 948 species 0 214 Planococcus faecalis 1 1598147 55 species 0 1 1374 Planococcus kocurii Planococcus donghaensis 414778 1 0 species 1 1 161360 Planococcus antarcticus 637 species 0 1215089 1 Planococcus halocryophilus 10 0 species 4 1569 897 genus 0 Sporosarcina psychrophila 1476 1 0 species 745 2647733 2 0 no rank 15 Sporosarcina sp. P37 1 1930546 species 0 7 1930764 1 Sporosarcina sp. P33 8 0 species 137 species 0 1 1571 Sporosarcina ureae 1275 0 genus 1649 1 1 2644826 no rank 0 1275 1750719 1 Kurthia sp. 11kri321 1275 0 species 648800 2 0 genus 31 1 2637870 13 no rank 0 species 0 13 Solibacillus sp. R5-41 1 2048654 species 0 18 Solibacillus silvestris 1 76853 9 genus 0 1 648802 Rummeliibacillus stabekisii 1 241244 species 0 9 genus 0 5 1 157226 Jeotgalibacillus malaysiensis 1508404 1 0 species 5 1 0 family 50194 Bacillaceae 26 186817 111 2675234 5 53 0 genus Bacillus halodurans 86665 1 0 species 4 300825 1 Bacillus lehensis 8 0 species species 0 7 Bacillus krulwichiae 1 199441 Bacillus pseudofirmus 79885 1 0 species 9 25 0 species 79880 1 Bacillus clausii 2 2675230 genus 0 26 6 species 0 1 859143 Bacillus kochii 665099 1 Bacillus oceanisediminis 20 0 species 1101 genus 0 1 1906945 1101 0 species 1426 1 Parageobacillus thermoglucosidasius 22951 1 0 genus 1386 58 1829 Bacillus 0 species 9 Bacillus smithii 1479 1 1 1547283 Bacillus weihaiensis 6 species 0 species 0 827 Bacillus megaterium 1 1404 1 324767 Bacillus infantis 667 species 0 1 412384 Bacillus aryabhattai 21 species 0 1 1413 Bacillus cellulosilyticus 10 species 0 1 1792192 species group 0 8 293387 1 Bacillus altitudinis 8 0 species species 0 2629 Bacillus beveridgei 1 632773 19 185979 3695 no rank 0 0 species 1 Bacillus sp. JS 1127744 1 1 1409 Bacillus sp. (in: Bacteria) 187 species 0 species 0 10 Bacillus sp. IHB B 7164 1 1827146 1446792 1 Bacillus sp. Pc3 5 0 species 8 species 0 1 563169 Bacillus sp. SJ-10 94 species 0 1 98228 Bacillus sp. OxB-1 1 1628753 Bacillus sp. LM 4-2 187 species 0 80 0 species 1774743 1 Bacillus sp. SDLI1 2 species 0 1 2009331 Bacillus sp. MD-5 1941347 1 Bacillus sp. 275 10 0 species Bacillus sp. WP8 1 756828 species 0 5 13 species 0 1 1570330 Bacillus sp. BH072 4 species 0 1 2049935 Bacillus sp. Lzh-5 Bacillus sp. FJAT-14266 1 1837130 species 0 14 186 species 0 1 1574141 Bacillus sp. YP1 666686 1 Bacillus sp. 1NLA3E 1384 0 species species 0 739 Bacillus sp. 1s-1 1 2026248 Bacillus sp. H15-1 1856406 1 0 species 739 27 0 species 1565991 1 Bacillus sp. X1(2014) 1 86664 Bacillus flexus 9 species 0 Bacillus xiamenensis 1 1178537 species 0 250 1 1664069 Bacillus glycinifermentans 455 species 0 1 1408 Bacillus pumilus 588 species 0 1 79881 Bacillus gibsonii 185 species 0 6 species 0 1 1471 Bacillus methanolicus Bacillus horikoshii 1 79883 species 0 1262 23 species 0 1 561879 Bacillus safensis Bacillus endophyticus 135735 1 0 species 98 species 0 3 Bacillus cohnii 1 33932 10 86661 4391 species group 0 Bacillus cereus 1 1396 species 0 1293 Bacillus toyonensis 1 155322 species 0 2 49 0 species 1405 1 Bacillus mycoides Bacillus anthracis 1 1392 species 0 645 Bacillus thuringiensis 1428 1 0 species 1479 0 no rank 893 2750818 3 10 0 species 1839798 1 Bacillus sp. FDAARGOS_235 1892404 1 Bacillus sp. ABP14 240 0 species 1 2053832 Bacillus sp. HBCD-sjtu 643 species 0 species 0 27 Bacillus bombysepticus 1 658666 3 species 0 1 580165 Bacillus cytotoxicus 3320 0 species group 653685 9 0 species 1179 Bacillus paralicheniformis 1648923 1 species 0 736 Bacillus licheniformis 1 1402 472 species 0 1 119858 Bacillus sonorensis 493 0 species subgroup 1938374 3 0 species 282 Bacillus velezensis 492670 1 659243 1 Bacillus siamensis 80 0 species Bacillus amyloliquefaciens 1390 1 0 species 131 3 0 species 72361 1 Bacillus vallismortis 17 0 species 1452 1 Bacillus atrophaeus 420 0 species 1423 1 Bacillus subtilis 2660 species 0 1 1398 Bacillus coagulans 1163 genus 0 1 7 84406 2 Virgibacillus species 0 4 Virgibacillus pantothenticus 1 1473 2620237 2 15 0 no rank 13 species 0 1 1911587 Virgibacillus sp. 6R 2 species 0 1 403957 Virgibacillus sp. SK37 163877 1 Virgibacillus necropolis 1111 0 species 2017483 1 Virgibacillus phasianinus 26 0 species 5 species 0 1 1482 Virgibacillus halodenitrificans 1055323 1 10 0 genus Aeribacillus pallidus 1 33936 species 0 10 3 0 genus 29331 1 1 1449 Amphibacillus xylanus 3 species 0 1329200 2 1159 0 genus Fictibacillus arsenicus 255247 1 0 species 565 594 species 0 1 1221500 Fictibacillus phosphorivorans 0 genus 21 45667 2 species 0 16 Halobacillus halophilus 1 1570 5 0 species 402384 1 Halobacillus mangrovi 194 0 genus 175304 1 194 species 0 1 1472767 Lentibacillus amyloliquefaciens genus 1 0 18886 Geobacillus 1619 15 129337 species 0 492 Geobacillus subterraneus 1 129338 0 species group 7108 1505648 4 Geobacillus thermoleovorans 33941 1 0 species 3551 Geobacillus lituanicus 169283 1 0 species 2344 0 species 1207 Geobacillus thermocatenulatus 33938 1 Geobacillus kaustophilus 1 1462 species 0 6 6 2642459 4279 no rank 0 Geobacillus sp. GHH01 1 1233873 species 0 488 0 species 1618 Geobacillus sp. Y412MC61 544556 1 0 species 1269 Geobacillus sp. C56-T3 691437 1 213 species 0 1 471223 Geobacillus sp. WCH70 31 species 0 1 581103 Geobacillus sp. Y4.1MC1 species 0 660 Geobacillus sp. Y412MC52 1 550542 species 0 105 Geobacillus genomosp. 3 1 1921421 0 species 3655 Geobacillus stearothermophilus 1422 1 33940 1 Geobacillus thermodenitrificans 1628 0 species genus 0 145 1 351195 1230341 1 Salimicrobium jeotgali 145 0 species 919 genus 0 1 459532 1 586416 Terribacillus aidingensis 919 species 0 150247 6 1 Anoxybacillus 1234 1 0 genus Anoxybacillus flavithermus 33934 1 0 species 1204 294699 1 Anoxybacillus amylolyticus 7 0 species Anoxybacillus gonensis 198467 1 0 species 4 0 no rank 18 2639704 2 Anoxybacillus sp. B7M1 1490057 1 0 species 11 1 1490052 Anoxybacillus sp. B2M1 7 species 0 2 2675229 genus 0 1089 0 species 568 Bacillus muralis 264697 1 1478 1 Bacillus simplex 521 0 species 7 genus 0 1 182709 Oceanobacillus iheyensis 1 182710 species 0 7 genus 0 1207 4 400634 Lysinibacillus varians 1 1145276 species 0 13 Lysinibacillus fusiformis 28031 1 0 species 23 species 0 163 Lysinibacillus sphaericus 1 1421 1008 0 no rank 2636778 1 0 species 1008 Lysinibacillus sp. YS11 2072025 1 1150 0 family 186821 1 1150 0 no rank 663587 1 species 0 1150 [Bacillus] selenitireducens 1 85683 2049 phylum 0 2 200938 2049 class 0 2 118001 2 189769 order 0 2049 2 189770 family 0 2049 2049 genus 0 1 2 393029 Desulfurispirillum 3 Desulfurispirillum indicum 936456 1 0 species 2046 4939 0 phylum 32066 18 4939 class 0 18 203490 4939 order 1 0 18 203491 1 Fusobacteriales 9 203492 4059 family 0 848 8 3875 0 genus 1712 species 0 1 860 Fusobacterium periodonticum 0 species 4 Fusobacterium mortiferum 850 1 17 species 0 1 859 Fusobacterium necrophorum 1 856 Fusobacterium varium 20 species 0 Fusobacterium hwasookii 1 1583098 species 0 514 0 species 850 Fusobacterium ulcerans 861 1 Fusobacterium gonidiaformans 849 1 0 species 30 728 0 species 851 1 Fusobacterium nucleatum 0 genus 184 167639 1 1 167642 Ilyobacter polytropus 184 species 0 family 0 879 8 1129771 34104 1 2 0 genus Streptobacillus moniliformis 1 34105 species 0 2 5 32067 Leptotrichia 10 864 genus 0 1 2633022 3 22 0 no rank 15 species 0 1 712357 Leptotrichia sp. oral taxon 212 1 712368 Leptotrichia sp. oral taxon 498 4 species 0 species 0 3 Leptotrichia sp. oral taxon 847 1 1785996 832 0 species 40542 1 Leptotrichia buccalis 1 168808 genus 0 7 Sneathia amnii 187101 1 0 species 7 1 32068 genus 0 6 Sebaldella termitidis 826 1 0 species 6 0 phylum 20270 40117 12 12 Nitrospira 203693 12 1 0 class 20270 0 1 order 20258 Nitrospirales 12 189778 11 1 0 family 20246 1 Nitrospiraceae 189779 10 1 0 genus 19152 2 Nitrospira 1234 5 0 species 4713 Nitrospira japonica 1325564 1 0 species 8144 Nitrospira moscoviensis 42253 1 species 0 4151 Candidatus Nitrospira inopinata 1 1715989 2142 species 0 1 330214 Nitrospira defluvii 354 genus 0 1 28261 Thermodesulfovibrio yellowstonii 28262 1 0 species 354 179 3 0 genus 739 243 0 species group 655606 1 Leptospirillum ferrooxidans 180 1 0 species 243 135 species group 0 1 261386 135 0 species 178606 1 Leptospirillum ferriphilum 0 species group 361 261385 1 361 0 species 1660083 1 Leptospirillum sp. Group II 'CF-1' 3928 0 no rank 2323 2 1783234 2 3928 0 clade 95818 1 0 phylum 1229 1895827 1 1229 0 no rank 0 species 1229 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 1 1 95901 clade 0 2699 class 0 2699 1 2497643 2497644 1 2699 0 order 1 2497645 family 0 2699 genus 0 2699 1 1551504 0 species 2699 Candidatus Babela massiliensis 673862 1 1783270 282 0 clade 210501 1005 0 phylum 65842 2 1 Fibrobacteria 204430 2 1 0 class 1005 1 218872 1004 order 0 1004 family 0 1 204431 1 832 genus 0 1004 0 species 1004 Fibrobacter succinogenes 833 1 181367 clade 0 270 68336 156207 phylum 0 1 246 976 Bacteroidetes 2 117747 17 0 class 9922 200666 17 1 Sphingobacteriales 9922 0 1 order 9921 family 0 16 84566 2735 genus 0 5 84567 Pedobacter cryoconitis 1 188932 species 0 1556 430522 1 Pedobacter steynii 497 0 species 206 species 0 1 984 Pedobacter heparinus 466 0 no rank 2628915 1 Pedobacter sp. PACM 27299 1727164 1 0 species 466 363852 1 Pedobacter ginsengisoli 10 0 species 1649482 1 94 0 genus Pseudopedobacter saltans 151895 1 0 species 94 88 0 no rank 84568 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1986952 1 0 species 88 1177 genus 0 5 28453 4 2609468 1169 no rank 0 19 0 species 1538644 1 Sphingobacterium sp. ML3W Sphingobacterium sp. 21 1 743722 species 0 1140 0 species 4 Sphingobacterium sp. B29 1933220 1 species 0 6 Sphingobacterium sp. G1-14 1 2003121 8 species 0 1 1010 Sphingobacterium mizutaii 5817 genus 0 3 423349 Mucilaginibacter sp. BJC16-A31 1234841 1 0 species 1320 1958 0 no rank 2617802 1 1300914 1 Mucilaginibacter sp. PAMC 26640 1958 0 species 2539 0 species 1550579 1 Mucilaginibacter gotjawali 929509 1 10 0 genus Solitalea canadensis 995 1 0 species 10 19639 order 1 0 7 1100069 1681 Bacteroidetes Order II. Incertae sedis 17958 0 1 family 563843 6 Rhodothermaceae 4 Salinibacter 166 146918 2 0 1 genus 5119 146919 1 Salinibacter ruber 4953 0 species 1196022 1 6904 0 no rank Rhodothermaceae bacterium RA 1779382 1 0 species 6904 Rhodothermus 1163 2 29548 genus 1 0 5931 species 0 4768 Rhodothermus marinus 1 29549 1937959 3 0 class 821 821 0 order 1936988 3 0 family 814 1937961 1 2349 1 814 0 genus 814 species 0 1 2350 Haliscomenobacter hydrossis 7 family 0 2 89374 2 1007 Saprospira 1 7 genus 1 0 0 species 6 Saprospira grandis 1008 1 class 1 0 36106 2 Flavobacteriia 117 117743 36104 0 1 order 200644 116 1321 Flavobacteriales 353 0 family 1853230 2 353 genus 1 0 2 332102 Fluviicola 32 Fluviicola taffensis 1 191579 species 0 321 family 0 5719 17 2762318 1 34084 genus 0 13 13 0 species 34085 1 Riemerella anatipestifer 2414 genus 0 1 6 308865 1 Elizabethkingia Elizabethkingia genomosp. 4 1756150 1 0 species 42 1 172045 Elizabethkingia miricola 954 species 0 species 0 972 Elizabethkingia anophelis 1 1117645 439 species 0 1 238 Elizabethkingia meningoseptica Elizabethkingia genomosp. 3 1756149 1 0 species 6 genus 0 687 1 28250 Ornithobacterium rhinotracheale 1 28251 species 0 687 0 no rank 2605 2782232 9 8 59732 2550 genus 0 no rank 0 1994 3 2593645 2015076 1 Chryseobacterium sp. T16E-39 40 0 species species 0 13 Chryseobacterium sp. IHB B 17019 1 1721091 878220 1 Chryseobacterium sp. StRB126 1941 0 species 5 0 species 1324352 1 Chryseobacterium gallinarum 83 0 species 1685010 1 Chryseobacterium glaciei 12 0 species 558152 1 Chryseobacterium piperi 228 0 species 1265445 1 Chryseobacterium camelliae 228 species 0 1 253 Chryseobacterium indologenes 2782228 1 55 0 genus Chryseobacterium taklimakanense 1 536441 species 0 55 family 0 1386 9 39782 1386 genus 0 1 9 34098 1 Blattabacterium Blattabacterium punctulatus 1 164514 species 0 1 1368 no rank 0 6 2647581 Blattabacterium sp. (Mastotermes darwiniensis) 39768 1 0 species 1342 species 0 1 Blattabacterium sp. (Blaberus giganteus) 1 1186051 6 species 0 1 367806 Blattabacterium sp. (Blatta orientalis) 1 1316444 Blattabacterium sp. (Nauphoeta cinerea) 5 species 0 1 624186 Blattabacterium sp. (Blattella germanica) 11 species 0 Blattabacterium sp. (Periplaneta americana) 1 367488 species 0 3 Blattabacterium cuenoti 1653831 1 0 species 16 83 49546 Flavobacteriaceae 2 26785 family 0 1 0 genus 14 336276 1 1 2615019 14 no rank 0 species 0 14 Olleya sp. Bg11-27 1 2058135 3 326319 genus 0 47 27 no rank 0 2 2615033 13 0 species 313590 1 Dokdonia sp. MED134 species 0 14 Dokdonia sp. 4H-3-7-5 1 983548 20 0 species 326320 1 Dokdonia donghaensis 225842 2 0 genus 11 2644710 2 0 no rank 11 1336795 1 Formosa sp. Hel3_A1_48 7 0 species 0 species 4 Formosa sp. Hel1_33_131 1336794 1 458 0 genus 417127 1 Zunongwangia profunda 1 398743 species 0 458 2 Flavobacterium 9 237 genus 1 0 6709 996 1 Flavobacterium columnare 45 0 species species 0 877 Flavobacterium commune 1 1306519 1 312277 Flavobacterium indicum 4 species 0 species 0 305 Flavobacterium crassostreae 1 1763534 96345 1 Flavobacterium psychrophilum 745 0 species 4291 species 0 1 986 Flavobacterium johnsoniae 0 species 431 Flavobacterium gilvum 1492737 1 1 55197 Flavobacterium branchiophilum 9 species 0 112040 1 249 0 genus 1 63186 Zobellia galactanivorans 249 species 0 1 1209327 genus 0 2 1803846 1 Flavivirga eckloniae 2 0 species 1 153265 901 genus 0 1 101385 Aequorivita sublithincola 901 species 0 genus 0 50 1 143222 1 2633436 no rank 0 50 Salegentibacter sp. T436 1 1729720 species 0 50 genus 0 779 4 76831 Myroides odoratimimus 76832 1 0 species 255 10 0 species 480520 1 Myroides profundi 514 0 no rank 2642485 2 Myroides sp. ZB35 1458492 1 0 species 256 1 1583100 Myroides sp. A21 258 species 0 0 genus 7 1204360 1 762954 1 Siansivirga zeaxanthinifaciens 7 0 species 61432 2 0 no rank 25 Flavobacteriaceae bacterium 3519-10 531844 1 0 species 18 1 1150389 Flavobacteriaceae bacterium UJ101 7 species 0 1050 genus 0 1 252306 Robiginitalea biformata 1 252307 species 0 1050 7 0 genus 1649495 1 7 0 no rank 2622645 1 1936081 1 Seonamhaeicola sp. S2-3 7 0 species genus 0 675 5 52959 3 196858 no rank 0 618 species 0 596 Polaribacter sp. BM10 1 1529069 species 0 6 Polaribacter sp. MED152 1 313598 16 species 0 1 2058137 Polaribacter sp. ALD11 species 0 25 Polaribacter vadi 1 1774273 Polaribacter reichenbachii 996801 1 0 species 32 3395 genus 1 0 14 1016 Capnocytophaga 1 0 species 2 Capnocytophaga leadbetteri 327575 1 1 1017 Capnocytophaga gingivalis 250 species 0 species 0 6 Capnocytophaga ochracea 1 1018 Capnocytophaga canimorsus 1 28188 species 0 22 1230 no rank 0 6 2640652 Capnocytophaga sp. oral taxon 864 1316593 1 0 species 606 Capnocytophaga sp. ChDC OS43 209053 1 0 species 601 4 species 0 1 1705617 Capnocytophaga sp. oral taxon 323 Capnocytophaga sp. oral taxon 878 1 1316596 species 0 6 Capnocytophaga sp. H4358 1945658 1 0 species 3 0 species 10 Capnocytophaga sp. H2931 1945657 1 598 0 species 28189 1 Capnocytophaga cynodegmi Capnocytophaga sputigena 1019 1 0 species 231 1055 0 species 45243 1 Capnocytophaga haemolytica 0 genus 3 216431 1 1 313588 Croceibacter atlanticus 3 species 0 2034 0 genus 252356 4 3 2615042 no rank 0 1599 958 species 0 1 1836467 Maribacter sp. T28 Maribacter sp. HTCC2170 313603 1 0 species 235 Maribacter sp. 1_2014MBL_MicDiv 1644130 1 0 species 406 Maribacter cobaltidurans 1178778 1 0 species 435 0 genus 272 1176327 1 2636237 1 272 0 no rank 0 species 272 Aureitalea sp. RR4-38 2094025 1 4 104267 genus 0 870 6 0 species 669041 1 Tenacibaculum dicentrarchi 9 0 species 107401 1 Tenacibaculum maritimum 26 0 species 1850252 1 Tenacibaculum todarodis Tenacibaculum jejuense 1 584609 species 0 829 1 358023 genus 0 7 7 0 species 1622118 1 Lutibacter profundi 3482 0 genus 292691 4 12 species 0 1 1913577 Gramella sp. LPB0144 Gramella sp. SH35 1 2126553 species 0 832 1669 0 species 411153 1 Gramella forsetii 969 species 0 1 1486245 Gramella flava 83612 1 18 0 genus 57029 1 Psychroflexus torquis 18 0 species 286104 2 0 genus 24 24 0 no rank 2615021 2 754409 1 Winogradskyella sp. PG-2 5 0 species 0 species 19 Winogradskyella sp. J14-2 1936080 1 0 genus 1054 104264 3 Cellulophaga lytica 979 1 0 species 342 76594 1 Cellulophaga baltica 692 0 species Cellulophaga algicola 59600 1 0 species 20 0 genus 182 389486 1 2648869 1 0 no rank 182 182 0 species 1453352 1 Sediminicola sp. YIK13 genus 0 351 1 393005 species 0 351 Tamlana sp. UJ94 1 2069432 3 291183 genus 0 1278 1258 0 species 1486034 1 Lacinutrix venerupis 2 2647285 20 no rank 0 0 species 2 Lacinutrix sp. 5H-3-7-4 983544 1 0 species 18 Lacinutrix sp. Bg11-31 2057808 1 1293 genus 0 2 111500 species 0 12 Muricauda ruestringensis 1 111501 Muricauda lutaonensis 516051 1 0 species 1281 1 261827 genus 0 16 1736674 1 Algibacter alginicilyticus 16 0 species genus 0 1045 2 363408 1 328515 Nonlabens dokdonensis 1044 species 0 1 no rank 0 1 2615035 0 species 1 Nonlabens sp. MB-3u-79 2058134 1 2700084 1 1 0 genus 1 0 species 1850246 1 Lutibacter sp. LPB0138 178469 1 472 0 genus species 0 472 Arenibacter algicola 1 616991 1518147 1 0 genus 2 2 0 species 1790137 1 Wenyingzhuangia fucanilytica 1755828 1 0 family 19 genus 0 19 1 1755829 19 species 0 1 242600 Ichthyobacterium seriolicida 2 313602 no rank 0 5 1940138 1 0 genus 2 species 0 2 Candidatus Walczuchella monophlebidarum 1 1415657 3 genus 0 1 336809 Candidatus Sulcia muelleri 336810 1 0 species 3 1 1333713 516 family 0 1 267986 genus 0 516 0 species 516 Owenweeksia hongkongensis 253245 1 Bacteroidia 1 200643 49 0 1 class 23158 655 0 order 1970189 4 0 family 186 558415 1 1 1193324 186 genus 0 Alkalitalea saponilacus 889453 1 0 species 186 1 1970190 8 family 0 0 genus 8 1970191 1 8 0 species 1307839 1 Salinivirga cyanobacteriivorans 1 1573805 family 0 9 9 0 genus 2060722 1 0 species 9 Marinifilaceae bacterium SPP2 1717717 1 0 family 452 1471398 1 0 genus 452 1471399 1 452 species 0 1 1168034 Draconibacterium orientale 22502 1 0 order 171549 44 Bacteroidales 236 family 0 4139 6 2005525 3 375288 Parabacteroides 1 70 genus 1 0 0 species 28 Parabacteroides distasonis 823 1 41 0 no rank 2649774 1 species 0 41 Parabacteroides sp. CT06 1 2025876 Tannerella 1 3 195950 genus 0 1 4069 2620507 1 2630 0 no rank 1 712710 Tannerella sp. oral taxon HOT-286 2630 species 0 1438 0 species 28112 1 Tannerella forsythia 3079 family 0 3 171550 0 genus 619 1611681 1 1433126 1 Mucinivorans hirudinis 619 0 species 239759 2 245 Alistipes 2460 0 1 genus 2215 species 0 1 214856 Alistipes finegoldii 1631 0 no rank 333046 4 0 genus 5 511434 1 5 species 0 1 511435 Candidatus Azobacteroides pseudotrichonymphae 3 909656 genus 0 1626 19 0 species 821 1 Bacteroides vulgatus Bacteroides salanitronis 1 376805 species 0 1576 0 species 31 Bacteroides dorei 357276 1 family 0 5230 10 171552 5230 0 1 genus 838 10 249 Prevotella 325 species 0 1 1177574 Prevotella jejuni 354 species 0 1 589436 Prevotella fusca 22 species 0 1 839 Prevotella ruminicola 0 species 1310 Prevotella denticola 28129 1 species 0 531 Prevotella intermedia 1 28131 2096 species 0 1 76123 Prevotella enoeca Prevotella dentalis 1 52227 species 0 321 20 no rank 0 1 2638335 0 species 20 Prevotella sp. oral taxon 299 652716 1 Prevotella melaninogenica 28132 1 0 species 2 3 2005520 309 family 0 78 0 genus 1784836 1 78 0 species 1562970 1 Fermentimonas caenicola 294702 1 146 0 genus species 0 146 Proteiniphilum saccharofermentans 1 1642647 85 0 genus 307628 1 1642646 1 Petrimonas mucosa 85 0 species 815 11 Bacteroidaceae 3 4382 0 1 family 4379 genus 0 1 10 816 Bacteroides 2 5 0 species 28116 1 Bacteroides ovatus 1 246787 Bacteroides cellulosilyticus 1070 species 0 Bacteroides thetaiotaomicron 818 1 0 species 34 Bacteroides zoogleoformans 1 28119 species 0 19 species 0 1553 Bacteroides fragilis 1 817 species 0 8 Bacteroides caecimuris 1 1796613 1 28113 Bacteroides heparinolyticus 545 species 0 0 species 1065 Bacteroides caccae 47678 1 78 0 species 290053 1 Bacteroides helcogenes family 0 556 1 1853231 283168 1 556 0 genus 0 species 556 Odoribacter splanchnicus 28118 1 879 family 0 2 171551 2 836 genus 0 879 0 species 168 Porphyromonas asaccharolytica 28123 1 1 837 Porphyromonas gingivalis 711 species 0 family 0 22 1 2005523 22 0 genus 346096 1 1 185300 Paludibacter propionicigenes 22 species 0 0 family 1681 2005519 1 397864 1 1681 0 genus 0 species 1681 Barnesiella viscericola 397865 1 1 185291 no rank 0 358 358 0 species 1400053 1 Bacteroidales bacterium CF 0 class 2741 1853228 9 9 1853229 1 Chitinophagales 2741 order 1 0 2740 0 family 563835 8 379899 2 272 0 genus 0 species 60 Niabella ginsenosidivorans 1176587 1 212 0 species 446683 1 Niabella soli 1769012 1 0 genus 58 58 0 no rank 2636138 1 Arachidicoccus sp. BS20 1850526 1 0 species 58 79328 2 824 0 genus 79329 1 Chitinophaga pinensis 412 0 species 1 2029983 Chitinophagaceae bacterium 13 412 species 0 1 649460 399 genus 0 species 0 399 Filimonas lacunae 1 477680 0 genus 9 398041 1 Flavisolibacter tropicus 1492898 1 0 species 9 1 354354 1178 genus 0 Niastella koreensis 1 354356 species 0 1178 63818 class 0 1 43 768503 Cytophagia 2 42 768507 9 Cytophagales 63816 order 1 0 1 1853234 238 family 0 59740 1 238 0 genus 238 no rank 0 1 2664020 0 species 238 Persicobacter sp. JZB09 1085624 1 family 0 19 2 1501348 1 273135 genus 0 2 2641185 1 0 no rank 2 Cardinium endosymbiont of Encarsia pergandiella 249402 1 0 species 2 genus 0 17 1 281119 17 0 species 281120 1 Candidatus Amoebophilus asiaticus 11035 family 1 0 14 89373 Cytophagaceae 246 1 319458 42 genus 0 42 0 species 316068 1 Leadbetterella byssophila 978 1 5 0 genus Cytophaga hutchinsonii 1 985 species 0 5 genus 1 0 710 1 Runella 2 105 0 species 709 Runella slithyformis 106 1 6817 genus 1 0 6 107 Spirosoma 8 1344 0 species 1211326 1 Spirosoma aerolatum 1178516 1 Spirosoma montaniterrae 2809 0 species Spirosoma sp. HA7 1 2057025 species 0 900 1355 species 0 1 1379870 Spirosoma radiotolerans 401 0 species 564064 1 Spirosoma rigui 2 120831 321 Dyadobacter 2171 genus 0 1 0 species 1850 Dyadobacter fermentans 94254 1 genus 0 1044 1 861914 1 2620963 1044 no rank 0 Fibrella sp. ES10-3-2-2 1 1834519 species 0 1044 200667 2 3506 0 family 340671 1 649 0 no rank 649 species 0 1 1257021 Flammeovirgaceae bacterium 311 0 genus 2857 59739 1 2857 no rank 0 1 2637820 2857 species 0 1 1191459 Flammeovirga sp. MY04 2 1937968 1 Bernardetiaceae 501 family 1 0 1 1937972 genus 0 500 999 1 Bernardetia litoralis 500 0 species 2762301 1 14 0 family 869806 1 0 genus 14 14 0 species 1006 1 Marivirga tractuosa 291 Hymenobacteraceae 14 1853232 family 0 1 47235 2023 0 genus 323449 2 0 species 1124 Pontibacter korlensis 400092 1 899 species 0 1 388950 Pontibacter akesuensis 1877 0 genus 1379908 3 1624 0 no rank 2639626 2 Rufibacter sp. DG31D 1379910 1 0 species 1546 78 species 0 1 1379909 Rufibacter sp. DG15C 253 0 species 512763 1 Rufibacter tibetensis 8 89966 450 Hymenobacter 43044 genus 0 1 0 species 6195 Hymenobacter swuensis 1446467 1 5 2615202 no rank 0 31822 1385663 1 Hymenobacter sp. DG25A 8471 0 species Hymenobacter sp. PAMC 26628 1 1484118 species 0 5371 1 1484116 Hymenobacter sp. PAMC 26554 7198 species 0 1 1356852 Hymenobacter sp. APR13 5940 species 0 species 0 4842 Hymenobacter sp. DG25B 1 1385664 1411621 1 Hymenobacter sedentarius 4577 0 species 563798 5 1259 0 family 1 390846 genus 0 49 1 390884 Echinicola vietnamensis 49 species 0 genus 0 58 2 68288 51 0 species 104 1 Cyclobacterium marinum Cyclobacterium amurskyense 1 320787 species 0 7 5 genus 0 1 232244 species 0 5 Belliella baltica 1 232259 1147 genus 0 1 246875 1727163 1 Algoriphagus sp. M8-2 1147 0 species 20 1090 24162 phylum 0 24162 1 0 class 191410 20 Chlorobia 203 19 191411 30 Chlorobiales 23959 order 1 0 1 0 family 23929 12 Chlorobiaceae 191412 18 100715 1 0 genus 1073 Chloroherpeton thalassium 100716 1 0 species 1073 3 Prosthecochloris 5 1101 genus 0 1 4397 384 species 0 1 1102 Prosthecochloris aestuarii 4010 no rank 0 3 2632826 0 species 2469 Prosthecochloris sp. CIB 2401 1868325 1 Prosthecochloris sp. GSB1 1 281093 species 0 1478 63 species 0 1 1974213 Prosthecochloris sp. HL-130-GSB 10878 1 0 genus 256319 4 1 Chlorobaculum Chlorobaculum tepidum 1 1097 species 0 2227 species 0 3467 Chlorobaculum parvum 1 274539 274537 1 Chlorobaculum limnaeum 5183 0 species 0 no rank 7569 274493 7 1765 genus 0 2 1099 0 species 1650 Pelodictyon luteolum 1100 1 Pelodictyon phaeoclathratiforme 34090 1 0 species 115 Chlorobium 1 5 1091 genus 1 0 5804 1094 1 Chlorobium phaeovibrioides 340 0 species 1192 0 species 337090 1 Chlorobium chlorochromatii species 0 1106 Chlorobium limicola 1 1092 Chlorobium phaeobacteroides 1 1096 species 0 3165 0 phylum 998 1134404 4 998 class 0 1 4 795747 Ignavibacteria 1 order 1 0 997 Ignavibacteriales 1 3 795748 795749 1 88 0 family 795750 1 0 genus 88 Ignavibacterium album 1 591197 species 0 88 family 0 908 1 1334117 1134403 1 908 0 genus Melioribacter roseus 1 1134405 species 0 908 0 phylum 28102 142182 8 28102 1 0 class 219685 8 23 Gemmatimonadetes 28079 1 0 order 219686 7 Gemmatimonadales 6 6 219687 345 Gemmatimonadaceae 28073 family 1 0 1706036 2 Gemmatirosa 294 16390 0 1 genus 861299 1 Gemmatirosa kalamazoonesis 16096 0 species 1 0 genus 11338 Gemmatimonas 5 173479 3 8152 0 species 173480 1 Gemmatimonas aurantiaca Gemmatimonas phototrophica 1379270 1 0 species 3181 27 0 phylum 456828 2 27 genus 0 1 2 456826 1 Candidatus Cloacimonas species 0 26 Candidatus Cloacimonas acidaminovorans 1 456827 1731 phylum 0 1 5 74152 1 Elusimicrobia class 0 1691 2 447830 1783344 2 0 order 1691 1783343 2 1691 0 family 1408194 2 0 genus 1691 Candidatus Endomicrobium trichonymphae 1 1408204 species 0 23 1408281 1 Endomicrobium proavitum 1668 0 species 641853 1 16 0 class order 0 16 1 641854 641876 1 16 0 family 423604 1 16 0 genus 16 species 0 1 423605 Elusimicrobium minutum 0 no rank 23 99260 1 uncultured Termite group 1 bacterium 1 167965 species 0 23 0 phylum 332 68297 2 332 class 0 2 203486 332 0 order 203487 2 203488 2 332 0 family 13 2 0 genus 332 0 species 315 Dictyoglomus turgidum 513050 1 Dictyoglomus thermophilum 1 14 species 0 17 3610 0 phylum 200930 4 4 68337 3610 class 0 4 191393 3610 order 0 3610 family 0 4 191394 117999 1 311 0 genus 118000 1 Denitrovibrio acetiphilus 311 0 species 53572 1 0 genus 700 197162 1 Deferribacter desulfuricans 700 0 species 702 0 genus 545865 1 species 0 702 Calditerrivibrio nitroreducens 1 477976 0 genus 1897 2351 1 1897 0 species 2352 1 Flexistipes sinusarabici 1 2138240 phylum 0 49 49 0 class 2138243 1 2138246 1 0 order 49 1 2138247 family 0 49 0 genus 49 68335 1 0 species 49 Coprothermobacter proteolyticus 35786 1 clade 0 147360 76 1783257 0 phylum 3738 204428 18 7 Chlamydiia 204429 18 0 1 class 3738 4 1963360 2108 order 0 31 0 family 92712 1 34093 1 0 genus 31 Simkania negevensis 1 83561 species 0 31 92713 2 0 family 1737 83551 1 0 genus 442 1 83552 Parachlamydia acanthamoebae 442 species 0 1295 0 genus 282132 1 1295 0 species 389348 1 Candidatus Protochlamydia naegleriophila 0 family 340 92714 1 71666 1 340 0 genus 340 species 0 1 71667 Waddlia chondrophila order 0 1623 13 51291 Chlamydiaceae 1 809 13 0 1 family 1623 1113537 12 1622 0 no rank 1 0 genus 1622 224 Chlamydia 810 12 Chlamydia psittaci 83554 1 0 species 2 1 83557 Chlamydia caviae 2 species 0 1 1457141 Chlamydia avium 5 species 0 1 813 Chlamydia trachomatis 23 species 0 0 species 2 Chlamydia felis 83556 1 1 1457153 Chlamydia gallinacea 1 species 0 Chlamydia muridarum 83560 1 0 species 17 0 species 17 Chlamydia suis 83559 1 species 0 24 Chlamydia pneumoniae 1 83558 83555 1 Chlamydia abortus 1 0 species 0 species 1304 Chlamydia pecorum 85991 1 74201 24 11 Verrucomicrobia 61089 0 1 phylum 3 1955630 class 0 2308 3 717963 2308 order 0 2308 0 1 family 717964 3 Methylacidiphilaceae 1 0 genus 2307 511745 2 1 591154 Methylacidiphilum fumariolicum 2083 species 0 Methylacidiphilum infernorum 511746 1 0 species 224 203494 6 1 Verrucomicrobiae 5189 0 1 class 1 0 order 5188 15 Verrucomicrobiales 48461 5 1 0 family 5173 Akkermansiaceae 2 1647988 4 1 Akkermansia 239934 3 0 1 genus 5171 species 0 1467 Akkermansia muciniphila 1 239935 Akkermansia glycaniphila 1 1679444 species 0 3703 414999 10 Opitutae 183 36509 0 1 class order 0 1 35518 244 Opitutales 6 415000 35274 0 1 family 134623 5 Opitutaceae 28 Lacunisphaera 3 2 1961799 genus 0 1 10067 1838286 1 Lacunisphaera limnophila 10064 0 species 1 278955 no rank 0 12719 Opitutaceae bacterium TAV5 1 794903 species 0 12719 12460 genus 0 1 178440 Opitutus terrae 1 107709 species 0 12460 3 415001 1 Puniceicoccales 808 order 1 0 807 family 0 2 415002 genus 1 0 807 52 Coraliomargarita 2 442430 395922 1 Coraliomargarita akajimensis 755 0 species 134549 2 10 Spartobacteria 2907 0 1 class 1 134550 genus 0 2897 2648876 1 2897 0 no rank 2897 species 0 1 1704307 Candidatus Xiphinematobacter sp. Idaho Grape 14165 0 no rank 417295 2 1 2026799 Verrucomicrobia bacterium 7761 species 0 Verrucomicrobia bacterium IMCC26134 1637999 1 0 species 6404 203682 30 0 phylum 73302 1 0 class 61907 12 Planctomycetia 203683 21 0 order 22780 2691356 6 22780 0 1 family 1763524 6 58 Isosphaeraceae 2 127 Isosphaera 479 3271 genus 0 1 0 species 2792 Isosphaera pallida 128 1 466152 1 8089 0 genus 8089 species 0 1 466153 Singulisphaera acidiphila 11362 genus 1 0 2 1763521 Paludisphaera 3 11359 species 0 1 1387353 Paludisphaera borealis 5995 order 0 2 2691355 0 family 5995 1914233 2 Gemmata 1 113 2 0 1 genus 5995 2622970 1 5994 0 no rank 5994 0 species 1630693 1 Gemmata sp. SH-PL17 3 2691354 order 0 6588 3128 family 0 1 2691358 1676125 1 0 genus 3128 3128 species 0 1 1331910 Thermogutta terrifontis 2691357 2 0 family 3460 1479 genus 0 1 123 species 0 1479 Pirellula staleyi 1 125 265488 1 1981 0 genus 0 species 1981 Rhodopirellula baltica 265606 1 112 9 Planctomycetales 799 26532 1 0 order 126 8 465 Planctomycetaceae 25733 0 1 family Planctomyces 1775 118 3 0 1 genus 18790 no rank 0 17015 2 2648843 1632864 1 Planctomyces sp. SH-PL14 6453 0 species 1 1636152 Planctomyces sp. SH-PL62 10562 species 0 1 1936111 genus 0 1877 species 0 1877 Fuerstia marisgermanicae 1 1891926 2957 genus 1 0 2 1649490 Rubinisphaera 66 Rubinisphaera brasiliensis 1 119 species 0 2891 1644 genus 0 1 1649480 Planctopirus limnophila 120 1 0 species 1644 2 2517206 68 class 0 order 0 68 2 1127829 68 0 family 1127830 2 genus 0 1 68 1 Candidatus Kuenenia 2 380738 67 species 0 1 174633 Candidatus Kuenenia stuttgartiensis 11327 0 1 class 666505 7 3 Phycisphaerae 0 order 3579 2483366 2 3579 family 0 2 2483367 2483368 2 0 genus 3579 2333 species 0 1 1941349 Phycisphaerae bacterium ST-PulAB-D4 Phycisphaerae bacterium L21-RPul-D3 1940790 1 0 species 1246 7745 order 0 1 4 666506 Phycisphaerales 4 666507 3 Phycisphaeraceae 6 7741 1 0 family 1 0 genus 7735 Phycisphaera 669 666508 2 species 0 7066 Phycisphaera mikurensis 1 547188 134625 3 0 phylum 3205 class 1 0 3205 Kiritimatiellae 2 3 1921781 Kiritimatiellales 352 2 1921782 order 0 1 3203 1921783 1 2851 0 family 1921784 1 0 genus 2851 2851 0 species 1307763 1 Kiritimatiella glycovorans 6026 0 phylum 256845 1 1 1313211 class 0 6026 6026 order 0 1 278082 1 1674876 6026 no rank 0 6026 0 species 2094242 1 Victivallales bacterium CCUG 44730 1307 0 phylum 200940 7 Thermodesulfobacteria 1 7 67799 class 1 0 1307 1306 order 0 6 188710 1306 1 0 family 188711 6 Thermodesulfobacteriaceae 1 2 1740 110 genus 0 0 species 14 Thermodesulfobacterium commune 1741 1 96 species 0 1 1295609 Thermodesulfobacterium geofontis 1179 genus 0 1 2 241192 Thermodesulfatator 1168 1 171695 Thermodesulfatator indicus 11 species 0 0 genus 16 444090 1 1 1653476 Caldimicrobium thiodismutans 16 species 0 1224 1850 Proteobacteria 1945 5575832 1 0 phylum 580370 4 0 class 829 829 0 1 order 580371 4 Mariprofundales 11 818 0 family 580372 3 3 377315 Mariprofundus 2 818 genus 1 0 Mariprofundus aestuarium 1 1921086 species 0 144 672 species 0 1 1921087 Mariprofundus ferrinatatus 1793957 class 1 0 806 1236 Gammaproteobacteria 2188 order 0 1 15826 Acidiferrobacterales 42 6 1692040 15784 family 0 1 5 1692041 147 Acidiferrobacteraceae 0 1 genus 9807 Sulfuricaulis 5 1744881 2 9802 species 0 1 1620215 Sulfuricaulis limicola 1692042 2 Sulfurifustis 1 5830 0 1 genus 5829 species 0 1 1675686 Sulfurifustis variabilis order 1 0 215427 26 Aeromonadales 27 135624 215401 family 1 0 26 84642 Aeromonadaceae 657 0 genus 1833 225143 2 1 1416627 Oceanisphaera profunda 1002 species 0 species 0 831 Oceanisphaera sp. AMac2203 1 1903694 genus 1 0 3536 Oceanimonas 1 2 129577 3535 no rank 0 1 2636315 0 species 3535 Oceanimonas sp. GK1 511062 1 18 642 3605 Aeromonas 205030 genus 0 1 1 558964 Aeromonas aquatica 2512 species 0 14398 no rank 0 8 257493 1 1636606 Aeromonas sp. ASNIH1 1913 species 0 Aeromonas sp. CA23 1 2033032 species 0 1143 species 0 3045 Aeromonas sp. ASNIH4 1 1636609 Aeromonas sp. ASNIH2 1636607 1 0 species 1460 1 1758179 Aeromonas sp. ASNIH5 894 species 0 0 species 1882 Aeromonas sp. CU5 2033033 1 Aeromonas sp. ASNIH7 1920107 1 0 species 1412 Aeromonas sp. ASNIH3 1 1636608 species 0 2649 723 species 0 1 648 Aeromonas caviae 0 species 2086 Aeromonas dhakensis 196024 1 Aeromonas veronii 654 1 0 species 6320 1 652 Aeromonas schubertii 326 species 0 0 species 2297 Aeromonas salmonicida 645 1 species 0 1302 Aeromonas rivipollensis 1 948519 171284 0 species 644 1 Aeromonas hydrophila 1 651 Aeromonas media 177 species 0 genus 0 270 1 43947 species 0 270 Tolumonas auensis 1 43948 4 Zobellella 2 347533 genus 1 0 4075 Zobellella denitrificans 347534 1 0 species 4071 Cellvibrionales 79 1706369 25 1 0 order 13797 family 1 0 129 Spongiibacteraceae 1 4 1706375 16 0 genus 1434050 1 Zhongshania aliphaticivorans 1470434 1 0 species 16 genus 0 89 1 1084558 Oceanicoccus sagamiensis 1 716816 species 0 89 23 genus 0 1 630749 1 2631504 no rank 0 23 1 1620392 Spongiibacter sp. IMCC21906 23 species 0 0 1 family 2627 229 Halieaceae 1706372 4 1 0 genus 2398 Halioglobus 1 1217416 3 0 species 1272 Halioglobus pacificus 930806 1 species 0 1125 Halioglobus japonicus 1 930805 305 Cellvibrionaceae 11 1706371 family 1 0 5189 1 0 genus 3272 7 Cellvibrio 10 4 155077 1 Cellvibrio japonicus 2246 0 species 2 2624793 no rank 0 1019 335 0 species 1945512 1 Cellvibrio sp. PSBB023 684 species 0 1 1987723 Cellvibrio sp. PSBB006 447467 2 1 Simiduia 1386 1 0 genus 0 species 1385 Simiduia agarivorans 447471 1 0 genus 13 316625 1 1 86304 Saccharophagus degradans 13 species 0 2 2425 11 Teredinibacter 37 genus 1 0 1 2426 Teredinibacter turnerae 26 species 0 genus 0 176 1 2036021 1 1737490 Agarilytica rhodophyticola 176 species 0 1706373 5 3 Microbulbiferaceae 5773 1 0 family genus 0 1 5770 2 Microbulbifer 4 48073 252514 1 Microbulbifer thermotolerans 2350 0 species species 0 1200 Microbulbifer agarilyticus 1 260552 2218 species 0 1 1769779 Microbulbifer aggregans order 0 1 5738 3 Nevskiales 4 1775403 0 family 5 Sinobacteraceae 568386 1 2689614 2 5730 0 family 5730 genus 1 0 2 469322 13 Steroidobacter 465721 1 Steroidobacter denitrificans 5717 0 species order 0 139 2 1240482 139 family 0 2 1240483 1 1335631 7 genus 0 Frischella perrara 1 1267021 species 0 7 1193503 1 0 genus 132 species 0 132 Gilliamella apicola 1 1196095 91347 221 Enterobacterales 2297 330656 0 1 order no rank 0 47 1 451511 47 0 genus 702 1 Plesiomonas shigelloides 703 1 0 species 47 36 1903411 Yersiniaceae 371 74109 family 0 1 3520 0 1 genus 629 13 3 Yersinia 1 2653513 11 no rank 0 1839800 1 Yersinia sp. FDAARGOS_228 11 0 species 0 species 10 Yersinia ruckeri 29486 1 Yersinia intermedia 1 631 species 0 11 Yersinia rohdei 1 29485 species 0 71 Yersinia kristensenii 1 28152 species 0 11 species 0 236 Yersinia aldovae 1 29483 Yersinia frederiksenii 1 29484 species 0 276 1799 species 0 1 630 Yersinia enterocolitica 0 species group 1080 1649845 3 632 1 Yersinia pestis 808 0 species 15 species 0 1 367190 Yersinia similis Yersinia pseudotuberculosis 633 1 0 species 257 Yersinia aleksiciae 263819 1 0 species 12 64173 genus 0 1 16 613 1388 Serratia 503 0 species 61652 1 Serratia rubidaea 0 species 47 Serratia proteamaculans 28151 1 0 species 14130 Serratia marcescens 615 1 Serratia ficaria 1 61651 species 0 3378 3715 0 species 614 1 Serratia liquefaciens 1 82996 Serratia plymuthica 3896 species 0 Serratia fonticola 47917 1 0 species 23661 2647522 8 13455 0 no rank 1350 species 0 1 2033438 Serratia sp. MYb239 0 species 86 Serratia sp. ATCC 39006 104623 1 Serratia sp. AS13 768493 1 0 species 969 0 species 1380 Serratia sp. FGI94 671990 1 768490 1 Serratia sp. AS12 969 0 species 1327989 1 Serratia sp. FS14 2229 0 species 4326 species 0 1 488142 Serratia sp. SCBI Serratia sp. SSNIH1 1758196 1 0 species 2146 3610 0 1 genus 34037 4 Rahnella 1 2635087 2 1977 0 no rank Rouxiella sp. ERMR1:05 1805933 1 0 species 341 1636 species 0 1 741091 Rahnella sp. Y9602 1 34038 Rahnella aquatilis 1632 species 0 1745211 1 0 genus 1182 Chania multitudinisentens 1639108 1 0 species 1182 1253 0 genus 929812 1 Gibbsiella quercinecans 929813 1 0 species 1253 Pectobacteriaceae 6 1903410 20 0 1 family 26012 6 204037 24 Dickeya 14994 genus 0 1 204039 1 Dickeya dianthicola 2803 0 species 1 204038 Dickeya dadantii 4328 species 0 4471 0 species 1778540 1 Dickeya fangzhongdai species 0 759 Dickeya zeae 1 204042 0 species 2609 Dickeya solani 1089444 1 5780 genus 1 0 6 122277 2 Pectobacterium 1 1905730 Pectobacterium parmentieri 1013 species 0 species 0 127 Pectobacterium polaris 1 2042057 554 1 Pectobacterium carotovorum 2071 0 species 1184 species 0 1 29471 Pectobacterium atrosepticum Pectobacterium wasabiae 1 55208 species 0 1383 genus 0 1 3300 Sodalis 23 5 84565 0 species 1397 Sodalis glossinidius 63612 1 Sodalis endosymbiont of Henestaris halophilus 1 1929246 species 0 162 1337 0 species 1486991 1 Candidatus Sodalis pierantonius Sodalis praecaptivus 1 1239307 species 0 381 1932 1 0 genus 71655 2 7 Brenneria 0 species 1925 Brenneria goodwinii 1109412 1 181250 0 1 family 543 107 Enterobacteriaceae 2105 3 620 genus 0 1416 729 species 0 1 622 Shigella dysenteriae 1 2629414 20 no rank 0 Shigella sp. PAMC 28760 1813821 1 0 species 20 Shigella flexneri 623 1 0 species 667 25094 genus 1 0 14 544 Citrobacter 297 0 species 599 Citrobacter rodentium 67825 1 0 species 465 Citrobacter koseri 545 1 species 0 879 Citrobacter farmeri 1 67824 Citrobacter amalonaticus 1 35703 species 0 4526 14909 0 species group 1344959 7 1 2066049 Citrobacter freundii complex sp. CFNIH2 685 species 0 Citrobacter werkmanii 1 67827 species 0 2322 Citrobacter freundii complex sp. CFNIH3 2077147 1 0 species 2448 2077149 1 Citrobacter freundii complex sp. CFNIH9 1222 0 species Citrobacter freundii complex sp. CFNIH4 2077148 1 0 species 980 0 species 3846 Citrobacter freundii 546 1 1 57706 Citrobacter braakii 3406 species 0 0 no rank 3419 2644389 2 459 0 species 1702170 1 Citrobacter sp. FDAARGOS_156 Citrobacter sp. CFNIH10 1 1920110 species 0 2960 3 590 2 Salmonella 6455 genus 1 0 1 54736 Salmonella bongori 327 species 0 Salmonella enterica 1 28901 species 0 6126 1330547 4 0 genus 4556 1 208223 Kosakonia cowanii 922 species 0 535 species 0 1 1158459 Kosakonia sacchari 1 283686 Kosakonia radicincitans 1084 species 0 2015 0 species 497725 1 Kosakonia oryzae 0 no rank 1186 191675 14 1186 0 clade 84563 14 genus 0 467 1 1906659 species 0 467 Candidatus Hoaglandella endobia 1 1778263 20 clade 0 6 84564 6 203804 20 genus 0 2 711328 10 no rank 0 1 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 species 0 species 0 9 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1 1505597 species 0 5 Candidatus Blochmannia vafer 1 251535 0 species 2 Candidatus Blochmannia pennsylvanicus 101534 1 2 0 species 251542 1 Candidatus Blochmannia chromaiodes species 0 1 Candidatus Blochmannia floridanus 1 203907 1 1906661 665 genus 0 0 species 665 Candidatus Gullanella endobia 1070130 1 1906660 1 0 genus 3 Candidatus Mikella endobia 1778264 1 0 species 3 1906657 1 5 0 genus 1 1778262 Candidatus Doolittlea endobia 5 species 0 3 146507 clade 0 15 1 568987 genus 0 13 1 138072 Candidatus Hamiltonella defensa 13 species 0 134287 1 secondary endosymbiont of Heteropsylla cubana 1 0 species secondary endosymbiont of Ctenarytaina eucalypti 1 1199245 species 0 1 11 genus 0 1 1682492 0 species 11 Candidatus Tachikawaea gelatinosa 1410383 1 10 570 Klebsiella 719 41337 genus 1 0 1 571 Klebsiella oxytoca 8045 species 0 0 species 1990 Klebsiella quasipneumoniae 1463165 1 species 0 7073 Klebsiella variicola 1 244366 2 2608929 3292 no rank 0 1206 0 species 1905288 1 Klebsiella sp. LTGPAF-6F Klebsiella sp. M5al 1 1934254 species 0 2086 species 0 5255 Klebsiella michiganensis 1 1134687 9345 0 species 573 1 Klebsiella pneumoniae species 0 1549 Klebsiella quasivariicola 1 2026240 Klebsiella aerogenes 1 548 species 0 4069 genus 1 0 15209 Cronobacter 14 8 413496 1670 species 0 1 413501 Cronobacter muytjensii 1042 0 species 535744 1 Cronobacter universalis Cronobacter malonaticus 1 413503 species 0 1595 Cronobacter turicensis 1 413502 species 0 4308 0 species 1340 Cronobacter dublinensis 413497 1 1 28141 Cronobacter sakazakii 4565 species 0 species 0 675 Cronobacter condimenti 1 1163710 22 547 1063 Enterobacter 31452 genus 0 1 2608935 9 0 no rank 10861 species 0 2069 Enterobacter sp. SA187 1 1914861 Enterobacter sp. FY-07 1 1692238 species 0 1224 Enterobacter sp. 638 1 399742 species 0 375 0 species 3069 Enterobacter sp. CRENT-193 2051905 1 533 0 species 1827481 1 Enterobacter sp. ODB01 Enterobacter sp. Crenshaw 1 1977566 species 0 1435 1 1166130 Enterobacter sp. R4-368 382 species 0 0 species 763 Enterobacter sp. HK169 1868135 1 1011 species 0 1 1560339 Enterobacter sp. E20 12 354276 19528 species group 0 species 0 376 Enterobacter ludwigii 1 299767 1067 0 species 69218 1 Enterobacter cancerogenus Enterobacter asburiae 1 61645 species 0 3477 8486 species 0 1 550 Enterobacter cloacae Enterobacter kobei 1 208224 species 0 187 1 1812935 Enterobacter cloacae complex 'Hoffmann cluster IV' 886 species 0 3 158836 Enterobacter hormaechei 2887 3746 species 1 0 0 subspecies 420 Enterobacter xiangfangensis 1296536 1 1812934 1 Enterobacter cloacae complex 'Hoffmann cluster III' 439 0 subspecies 3 2757714 1303 no rank 0 Enterobacter cloacae complex sp. ECNIH7 1 1915310 species 0 914 Enterobacter cloacae complex bacterium 2027919 1 0 species 59 330 species 0 1 2077137 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 160674 3 2 Raoultella 5464 1 0 genus 1 575 Raoultella planticola 1744 species 0 Raoultella ornithinolytica 54291 1 0 species 3718 genus 0 2550 3 1330545 1 1907578 Lelliottia jeotgali 779 species 0 1 61646 Lelliottia amnigena 147 species 0 1624 species 0 1 69220 Lelliottia nimipressuralis 36866 5 0 no rank 5665 1 891974 Plautia stali symbiont 3422 species 0 Enterobacteriaceae bacterium ENNIH1 2066051 1 0 species 1882 Enterobacteriaceae bacterium ENNIH2 1920109 1 0 species 73 211 0 species 1920128 1 Enterobacteriaceae bacterium ENNIH3 species 0 77 Enterobacteriaceae bacterium strain FGI 57 1 693444 1838 0 genus 579 1 Kluyvera intermedia 61648 1 0 species 1838 1 0 genus 8829 3 Pluralibacter 1330546 3 2253 0 species 1334193 1 [Enterobacter] lignolyticus Pluralibacter gergoviae 1 61647 species 0 6573 0 1 genus 4451 5 Leclercia 83654 4 83655 1 Leclercia adecarboxylata 1163 0 species 3283 0 no rank 2627398 2 1920116 1 Leclercia sp. LSNIH3 932 0 species 1920114 1 Leclercia sp. LSNIH1 2351 0 species 630 0 genus 1335483 1 0 species 630 Shimwellia blattae 563 1 561 5 Escherichia 1 17083 0 1 genus 1303 species 0 1 208962 Escherichia albertii Escherichia coli 562 1 0 species 15271 Escherichia fergusonii 1 564 species 0 148 Escherichia marmotae 1499973 1 0 species 360 17 Cedecea 2 158483 genus 0 1 5929 0 species 5912 Cedecea neteri 158822 1 1 0 genus 401618 1 401619 1 Candidatus Riesia pediculicola 1 0 species 1903414 17 9041 0 family 626 5 5052 0 genus Xenorhabdus hominickii 1 351679 species 0 1693 40576 1 Xenorhabdus bovienii 2606 0 species Xenorhabdus nematophila 1 628 species 0 105 Xenorhabdus poinarii 40577 1 0 species 564 351671 1 Xenorhabdus doucetiae 84 0 species 3 29487 genus 0 524 322 0 species 291112 1 Photorhabdus asymbiotica 29488 1 Photorhabdus luminescens 128 0 species 74 0 species 574560 1 Photorhabdus temperata 3 586 genus 0 228 Providencia stuartii 1 588 species 0 6 587 1 Providencia rettgeri 11 0 species 1 126385 Providencia alcalifaciens 211 species 0 1367 1 0 genus 581 2 1 Morganella 1366 species 0 1 582 Morganella morganii Proteus 1 583 3 0 1 genus 1851 Proteus mirabilis 1 584 species 0 1539 0 species 311 Proteus vulgaris 585 1 637 1 0 genus 19 19 species 0 1 634113 Arsenophonus symbiont of Lipoptena fortisetosa family 0 215 1 1903416 1 82984 215 genus 0 species 0 215 Pragia fontium 1 82985 350 Hafniaceae 13 1903412 family 1 0 14655 12 genus 1 0 2 82982 Obesumbacterium 2 1 82983 Obesumbacterium proteus 10 species 0 0 1 genus 13655 Edwardsiella 860 635 8 Edwardsiella piscicida 1 1263550 species 0 2272 1 1821960 Edwardsiella anguillarum 1018 species 0 2942 0 no rank 2676541 2 0 species 1019 Edwardsiella sp. LADL05-105 1650654 1 species 0 1923 Edwardsiella sp. EA181011 1 1578828 67780 1 Edwardsiella ictaluri 796 0 species 3977 0 species 636 1 Edwardsiella tarda 1790 0 species 93378 1 Edwardsiella hoshinae genus 0 638 2 568 0 no rank 6 2621980 1 Hafnia sp. CBA7124 1848580 1 0 species 6 632 0 species 569 1 Hafnia alvei 8 Erwiniaceae 25 1903409 family 1 0 23030 1 0 genus 13903 125 Pantoea 53335 11 6007 0 no rank 2630326 3 Pantoea sp. PSNIH2 1 1484157 species 0 2874 0 species 2589 Pantoea sp. PSNIH1 1484158 1 Pantoea sp. At-9b 1 592316 species 0 544 315 0 species 1076550 1 Pantoea rwandensis species 0 2027 Pantoea stewartii 1 66269 1770 species 0 1 553 Pantoea ananatis 1 1654067 species group 0 1943 1943 species 0 1 549 Pantoea agglomerans Candidatus Pantoea carbekii 1235990 1 0 species 13 250 species 0 1 1891675 Pantoea alhagi Pantoea vagans 1 470934 species 0 1453 Erwinia 19 8 551 genus 1 0 3278 Erwinia amylovora 552 1 0 species 111 1 182337 Erwinia billingiae 549 species 0 0 species 3 Candidatus Erwinia sp. ErCipseudotaxifoliae 1922217 1 1132 0 species 1619313 1 Erwinia gerundensis 2622719 1 287 0 no rank species 0 287 Erwinia sp. Ejp617 1 215689 338565 1 Erwinia tasmaniensis 754 0 species 79967 1 Erwinia pyrifoliae 423 0 species 1 32199 861 genus 0 Buchnera aphidicola 9 1 0 species 861 genus 0 14 1 82986 species 0 14 Tatumella citrea 1 53336 2100764 2 0 genus 4785 Pantoea gaviniae 1 665914 species 0 2108 Pantoea calida 665913 1 0 species 2677 genus 0 181 1 51228 181 0 species 51229 1 Wigglesworthia glossinidia 8280 order 0 25 72273 135616 11 Piscirickettsiaceae 66 1770 1 0 family 403 1 0 genus 28884 2 Hydrogenovibrio 304 0 species 99 Hydrogenovibrio crunogenus 39765 1 genus 0 1227 2 933 Thiomicrospira cyclica 1 147268 species 0 346 1 92245 Thiomicrospira aerophila 881 species 0 34067 3 0 genus 30 12 0 species 1329899 1 Cycloclasticus zancles no rank 0 18 2 2621467 728003 1 Cycloclasticus sp. PY97N 13 0 species 5 0 species 385025 1 Cycloclasticus sp. P1 40222 2 0 genus 37 Methylophaga frappieri 1 754477 species 0 27 Methylophaga nitratireducenticrescens 754476 1 0 species 10 7 genus 0 1 1237 1238 1 Piscirickettsia salmonis 7 0 species 34064 12 6340 0 family 1 1869285 2 genus 0 2 species 0 1 594679 Allofrancisella guangzhouensis 11 262 genus 0 6338 10 0 no rank 2610885 2 1 1547445 Francisella sp. FSC1006 3 species 0 7 species 0 1 475375 Francisella sp. MA067296 28110 1 Francisella philomiragia 1934 0 species 1 species 0 1 954 Francisella persica 525 0 species 573569 1 Francisella sp. TX077308 3 species 0 1 573570 Francisella sp. TX077310 species 0 1409 Francisella tularensis 1 263 0 species 1923 Francisella noatunensis 657445 1 0 species 3 Francisella hispaniensis 622488 1 1542390 1 Francisella sp. CA97-1460 6 0 species species 0 524 Francisella halioticida 1 549298 135617 2 170 0 family 5 0 genus 1021 1 0 species 5 Beggiatoa leptomitoformis 288004 1 1 40751 165 genus 0 40754 1 Thioploca ingrica 165 0 species 19400 order 0 16 118969 13 444 19335 family 0 465 1 1424 0 genus 1424 species 0 1 451 Tatlockia micdadei 12 445 Legionella 1 17911 genus 1 0 Legionella spiritensis 452 1 0 species 1146 1 2005262 Legionella endosymbiont of Polyplax serrata 1 species 0 1 45067 Legionella lansingensis 1242 species 0 species 0 717 Legionella longbeachae 1 450 0 species 876 Legionella clemsonensis 1867846 1 96230 1 Legionella fallonii 2913 0 species 0 species 3745 Legionella waltersii 66969 1 0 species 20 Legionella hackeliae 449 1 2438 species 0 1 28087 Legionella sainthelensi 0 species 4500 Legionella pneumophila 446 1 312 0 species 29423 1 Legionella oakridgensis family 0 65 3 118968 60 genus 0 2 776 0 no rank 47 2676648 1 0 species 47 Coxiella endosymbiont of Amblyomma americanum 325775 1 13 0 species 777 1 Coxiella burnetii no rank 0 5 1 134284 0 species 5 Coxiella-like endosymbiont 1592897 1 107224 0 1 order 135613 50 Chromatiales 2220 18 72276 249 Ectothiorhodospiraceae 46421 family 1 0 2 1051 Ectothiorhodospira 3 2069 genus 1 0 1 2684909 2066 no rank 0 1442136 1 Ectothiorhodospira sp. BSL-9 2066 0 species 4474 1 0 genus 85108 2 3 Halorhodospira species 0 4471 Halorhodospira halophila 1 1053 7 Acidihalobacter 1765964 2 1 0 genus 4746 Acidihalobacter prosperus 1 160660 species 0 4739 1 0 genus 2930 Spiribacter 92 1335745 3 1335757 1 Spiribacter curvatus 2100 0 species 0 species 738 Spiribacter salinus 1335746 1 0 1 genus 26471 Thioalkalivibrio 177 106633 6 species 0 6032 Thioalkalivibrio nitratireducens 1 186931 7457 species 0 1 1033854 Thioalkalivibrio sulfidiphilus 0 no rank 4044 2621013 1 Thioalkalivibrio sp. K90mix 1 396595 species 0 4044 108010 1 Thioalkalivibrio paradoxus 5979 0 species 2782 0 species 106634 1 Thioalkalivibrio versutus 133193 2 8 Alkalilimnicola 5482 0 1 genus 5474 0 species 351052 1 Alkalilimnicola ehrlichii 2544 1 0 family 1738654 2 Woeseiaceae 1 2543 genus 0 1 1738655 Woeseia oceani 1548547 1 0 species 2543 1 Halothiobacillaceae 255526 4 0 1 family 4985 4984 genus 0 1 3 109262 Halothiobacillus 1 no rank 0 2550 1 2636392 1 1860122 Halothiobacillus sp. LS2 2550 species 0 Halothiobacillus neapolitanus 927 1 0 species 2433 2 1676141 family 0 3050 2 1676142 Wenzhouxiangella 2 3050 genus 1 0 0 species 3048 Wenzhouxiangella marina 1579979 1 no rank 0 5214 2 451214 5214 genus 1 0 2 1273155 386 Thiohalobacter 1 585455 Thiohalobacter thiocyanaticus 4828 species 0 1 Granulosicoccaceae 449719 3 1 0 family 4038 437504 2 305 Granulosicoccus 4037 0 1 genus Granulosicoccus antarcticus 1 437505 species 0 3732 18 1046 507 Chromatiaceae 38752 family 0 1 53392 2 12 Thiodictyon 7600 1 0 genus 7588 0 species 1166950 1 Candidatus Thiodictyon syntrophicum 13724 2 Thiocystis 443 7574 1 0 genus 0 species 7131 Thiocystis violascens 73141 1 Marichromatium 147 2 85076 genus 1 0 7504 species 0 7357 Marichromatium purpuratum 1 37487 0 1 genus 2427 Allochromatium 390 85072 2 1 1049 Allochromatium vinosum 2037 species 0 4120 no rank 0 1 82569 0 species 4120 Chromatiaceae bacterium 2141T.STBD.0c.01a 1978339 1 Thioflavicoccus 11 2 156885 genus 0 1 8165 Thioflavicoccus mobilis 1 80679 species 0 8154 1 Candidatus Nitrosoglobus 2 1980513 genus 1 0 16 1 1630141 Candidatus Nitrosoglobus terrae 15 species 0 0 1 genus 839 1 Nitrosococcus 1227 4 species 0 41 Nitrosococcus watsonii 1 473531 133539 1 Nitrosococcus halophilus 563 0 species 1 1229 Nitrosococcus oceani 234 species 0 2 33811 no rank 0 7445 gamma proteobacterium HdN1 1 83406 species 0 455 species 0 6990 endosymbiont of unidentified scaly snail isolate Monju 1 1248727 72274 127 Pseudomonadales 2617 613183 0 1 order 10413 1 0 family 468 41 263 Moraxellaceae 1 0 genus 7422 Acinetobacter 3 469 25 5 909768 3857 species group 0 1755 species 0 1 470 Acinetobacter baumannii Acinetobacter nosocomialis 1 106654 species 0 12 0 species 915 Acinetobacter calcoaceticus 471 1 520 0 species 1785128 1 Acinetobacter lactucae Acinetobacter pittii 1 48296 species 0 655 12 0 species 1789224 1 Acinetobacter larvae 12 species 0 1 29430 Acinetobacter haemolyticus 1 202950 species 0 7 1 62977 Acinetobacter sp. ADP1 7 strain 0 23 0 species 1148157 1 Acinetobacter oleivorans 8 species 0 1 1324350 Acinetobacter equi 1 756892 Acinetobacter indicus 1119 species 0 111 0 species 108981 1 Acinetobacter schindleri 1121 species 0 1 487316 Acinetobacter soli 587 0 no rank 196816 7 2 species 0 1 1407071 Acinetobacter sp. TGL-Y2 1 species 0 1 2079596 Acinetobacter sp. SWBY1 1 0 species 1758189 1 Acinetobacter sp. ACNIH2 Acinetobacter sp. NCu2D-2 1608473 1 0 species 201 1646498 1 Acinetobacter sp. TTH0-4 5 0 species 371 0 species 1636603 1 Acinetobacter sp. ACNIH1 6 0 species 1808001 1 Acinetobacter sp. LoGeW2-3 4 0 species 106648 1 Acinetobacter bereziniae species 0 381 Acinetobacter junii 1 40215 Acinetobacter johnsonii 40214 1 0 species 97 40216 1 Acinetobacter radioresistens 80 0 species 971 0 1 genus 497 11 1 Psychrobacter 196806 6 646 0 no rank Psychrobacter sp. P11G5 1 1699624 species 0 49 species 0 86 Psychrobacter sp. AntiMn-1 1 1720344 species 0 28 Psychrobacter sp. DAB_AL43B 1 1028416 1699622 1 Psychrobacter sp. P2G3 48 0 species 423 0 species 349106 1 Psychrobacter sp. PRwf-1 0 species 12 Psychrobacter sp. G 571800 1 10 species 0 1 330922 Psychrobacter cryohalolentis 266 species 0 1 334543 Psychrobacter arcticus 45610 1 Psychrobacter urativorans 4 0 species Psychrobacter alimentarius 261164 1 0 species 44 0 genus 1757 475 4 0 species 20 Moraxella ovis 29433 1 0 species 1707 Moraxella osloensis 34062 1 480 1 Moraxella catarrhalis 5 0 species Moraxella bovoculi 1 386891 species 0 25 family 0 1 600153 3605 Pseudomonadaceae 85 135621 genus 0 126 1 1849530 1 1697053 Oblitimonas alkaliphila 126 species 0 0 subfamily 17337 351 3 17337 genus 1 0 3 352 9 Azotobacter 10568 species 0 1 353 Azotobacter chroococcum 354 1 Azotobacter vinelandii 6760 0 species 579085 0 1 genus 286 80 15902 Pseudomonas 1 198620 Pseudomonas koreensis 6807 species 0 species 0 8368 Pseudomonas frederiksbergensis 1 104087 Pseudomonas lurida 1 244566 species 0 2721 0 species group 20623 136846 2 species 0 3337 Pseudomonas balearica 1 74829 1 578833 17286 species subgroup 0 17286 0 species 316 1 Pseudomonas stutzeri 312306 1 Pseudomonas entomophila 4839 0 species 1 1788301 Pseudomonas versuta 1128 species 0 930166 1 Pseudomonas brassicacearum 4877 0 species Pseudomonas knackmussii 65741 1 0 species 3178 0 no rank 90101 196821 30 4211 0 species 2049589 1 Pseudomonas sp. HLS-6 species 0 3889 Pseudomonas sp. MYb193 1 1827300 0 species 1242 Pseudomonas sp. LG1D9 2083054 1 Pseudomonas sp. Os17 1 1500686 species 0 2250 3736 species 0 1 2083052 Pseudomonas sp. SWI36 1503 0 species 2018067 1 Pseudomonas sp. FDAARGOS_380 2726 0 species 2083053 1 Pseudomonas sp. SWI44 Pseudomonas sp. JY-Q 1338689 1 0 species 2177 4071 0 species 1207075 1 Pseudomonas sp. UW4 1659194 1 Pseudomonas sp. GR 6-02 2887 0 species species 0 3128 Pseudomonas sp. NC02 1 2067572 species 0 797 Pseudomonas sp. CCOS 191 1 1649877 2900 0 species 1534110 1 Pseudomonas sp. DR 5-09 69328 1 Pseudomonas sp. VLB120 3973 0 species 4563 species 0 1 1294143 Pseudomonas sp. ATCC 13867 Pseudomonas sp. M30-35 1981174 1 0 species 983 Pseudomonas sp. SWI6 2083051 1 0 species 3220 0 species 2263 Pseudomonas sp. S-6-2 1931241 1 species 0 4106 Pseudomonas sp. CC6-YY-74 1 1930532 0 species 4904 Pseudomonas sp. StFLB209 1028989 1 1 1636610 Pseudomonas sp. PONIH3 1519 species 0 1 1259844 Pseudomonas sp. FGI182 3890 species 0 1283291 1 Pseudomonas sp. URMO17WK12:I11 3979 0 species 1415630 1 Pseudomonas sp. TKP 3520 0 species 1898684 1 Pseudomonas sp. LPH1 4553 0 species Pseudomonas sp. LH1G9 2083055 1 0 species 2568 1335 species 0 1 2069256 Pseudomonas sp. XWY-1 Pseudomonas sp. MRSN12121 1 1611770 species 0 3450 1500687 1 Pseudomonas sp. St29 2514 0 species 1 1856685 Pseudomonas sp. TCU-HL1 3244 species 0 6 136841 species group 0 70428 1232139 1 0 species subgroup 6475 species 0 6475 Pseudomonas furukawaii 1 1149133 0 species 8290 Pseudomonas resinovorans 53412 1 Pseudomonas aeruginosa 1 287 species 0 21773 species 0 4218 Pseudomonas alcaligenes 1 43263 0 species 14567 Pseudomonas citronellolis 53408 1 1 300 Pseudomonas mendocina 15105 species 0 3845 0 species 216142 1 Pseudomonas rhizosphaerae 2560 species 0 1 1583341 Pseudomonas cerasi 136849 8 37872 0 species group Pseudomonas viridiflava 33069 1 0 species 3283 1 2775504 1601 no rank 0 Pseudomonas sp. Lz4W 1 1206777 species 0 1601 Pseudomonas syringae group genomosp. 3 1 251701 species 0 7503 3221 species subgroup 0 2 251698 47877 1 Pseudomonas amygdali 1783 0 species 29438 1 Pseudomonas savastanoi 1438 0 species 781 0 species 36746 1 Pseudomonas cichorii 16577 0 species subgroup 251695 1 317 1 Pseudomonas syringae 16577 0 species 46257 1 Pseudomonas avellanae 4906 0 species 136842 2 0 species group 22093 Pseudomonas fragi 1 296 species 0 3725 18368 species 0 1 587753 Pseudomonas chlororaphis 0 species 2572 Pseudomonas cremoricolorata 157783 1 6 136845 72854 species group 0 0 species 46313 Pseudomonas putida 303 1 76759 1 Pseudomonas monteilii 11178 0 species Pseudomonas mosselii 1 78327 species 0 5155 1 47880 Pseudomonas fulva 4409 species 0 species 0 3706 Pseudomonas plecoglossicida 1 70775 2093 species 0 1 47885 Pseudomonas oryzihabitans 1 237610 Pseudomonas psychrotolerans 5302 species 0 Pseudomonas alkylphenolica 1 237609 species 0 1712 Pseudomonas antarctica 219572 1 0 species 2219 species 0 6426 Pseudomonas silesiensis 1 1853130 3747 species 0 1 157782 Pseudomonas parafulva Pseudomonas alcaliphila 101564 1 0 species 1537 0 species group 187374 136843 9 species 0 2383 Pseudomonas corrugata 1 47879 2827 species 0 1 75612 Pseudomonas mandelii 1 47878 Pseudomonas azotoformans 4440 species 0 2495 species 0 1 76761 Pseudomonas veronii 2602 species 0 1 76758 Pseudomonas orientalis 3302 species 0 1 200450 Pseudomonas trivialis 380021 1 Pseudomonas protegens 7605 0 species 1190 0 species 200451 1 Pseudomonas poae 160530 species 0 1 294 Pseudomonas fluorescens order 1 0 20504 304 Methylococcales 12 135618 Methylococcaceae 12 11 403 family 1 0 20200 762296 1 0 genus 1222 Methylovulum psychrotolerans 1704499 1 0 species 1222 genus 0 1 119 Methylomicrobium 1 2 39773 Methylomicrobium alcaliphilum 271065 1 0 species 118 Methylomonas 12 5 416 genus 0 1 13959 0 species 738 Methylomonas methanica 421 1 6140 no rank 0 1 2608980 0 species 6140 Methylomonas sp. DH-1 1727196 1 1720 species 0 1 1538553 Methylomonas denitrificans species 0 5349 Methylomonas koyamae 1 702114 2 413 Methylococcus 19 4888 genus 0 1 4869 0 species 414 1 Methylococcus capsulatus 34989 order 1 0 40 135623 2 Vibrionales family 1 0 34987 Vibrionaceae 19 39 641 42 genus 0 1 2042066 Paraphotobacterium marinum 1 1755811 species 0 42 0 genus 2709 657 3 462 0 species 1295392 1 Photobacterium gaetbulicola 0 species 1291 Photobacterium profundum 74109 1 1 38293 Photobacterium damselae 956 species 0 30469 0 1 genus 662 30 Vibrio 16 2025808 1 Vibrio qinghaiensis 818 0 species 8180 species group 0 10 717610 2 2315253 39 species subgroup 0 37 0 species 50719 1 Vibrio diabolicus Vibrio antiquarius 1 150340 species 0 2 1 190895 Vibrio rotiferianus 14 species 0 Vibrio alginolyticus 663 1 0 species 423 273 species 0 1 691 Vibrio natriegens 5184 species 0 1 680 Vibrio campbellii 15 species 0 1 669 Vibrio harveyi Vibrio parahaemolyticus 670 1 0 species 1615 1 696485 Vibrio owensii 569 species 0 766224 1 Vibrio jasicida 48 0 species Vibrio breoganii 553239 1 0 species 125 Vibrio coralliilyticus 190893 1 0 species 2039 Vibrio scophthalmi 45658 1 0 species 242 1 1534743 Vibrio hyugaensis 2082 species 0 1255 species 0 1 29494 Vibrio furnissii 0 species 1290 Vibrio vulnificus 672 1 0 species 159 Vibrio tapetis 52443 1 2 2614977 no rank 0 1188 142 species 0 1 1116375 Vibrio sp. EJY3 0 species 1046 Vibrio sp. 2521-89 2014742 1 species 0 4479 Vibrio anguillarum 1 55601 1421 species 0 1 676 Vibrio fluvialis 1615 species 0 1 674 Vibrio mimicus 2810 0 species 666 1 Vibrio cholerae 1050 0 species 28173 1 Vibrio nigripulchritudo Vibrio tasmaniensis 1 212663 species 0 22 0 species 986 Vibrio tritonius 1435069 1 0 species group 22 1891919 1 species 0 22 Vibrio tubiashii 1 29498 Vibrio gazogenes 687 1 0 species 670 511678 3 0 genus 17 Aliivibrio wodanis 1 80852 species 0 10 species 0 6 Aliivibrio fischeri 1 668 Aliivibrio salmonicida 40269 1 0 species 1 246861 1 0 genus 1731 Grimontia hollisae 1 673 species 0 1731 6280 order 0 24 135625 Pasteurellaceae 1 712 24 1 0 family 6280 1 697331 genus 0 1182 157673 1 [Mannheimia] succiniciproducens 1182 0 species 214906 1 0 genus 342 0 species 342 Histophilus somni 731 1 Actinobacillus 14 713 5 0 1 genus 2630 1 67854 Actinobacillus succinogenes 1038 species 0 1 0 species 718 1 Actinobacillus equuli 0 species 788 Actinobacillus pleuropneumoniae 715 1 1 716 Actinobacillus suis 789 species 0 2 745 genus 0 116 Pasteurella multocida 747 1 0 species 115 0 species 1 Pasteurella dagmatis 754 1 5 genus 0 1 476528 Bibersteinia trehalosi 47735 1 0 species 5 201 0 genus 75984 3 0 species 24 Mannheimia haemolytica 75985 1 16 no rank 0 1 2645054 1 1432056 Mannheimia sp. USDA-ARS-USMARC-1261 16 species 0 161 0 species 85404 1 Mannheimia varigena 977 genus 0 1 3 416916 Aggregatibacter 14 430 0 species 714 1 Aggregatibacter actinomycetemcomitans Aggregatibacter aphrophilus 732 1 0 species 533 5 724 342 genus 0 2 0 species 729 1 Haemophilus parainfluenzae [Haemophilus] ducreyi 730 1 0 species 4 22 species 0 1 727 Haemophilus influenzae 1 2609962 300 no rank 0 712310 1 Haemophilus sp. oral taxon 036 300 0 species 1 249188 Haemophilus pittmaniae 14 species 0 2094023 1 0 genus 7 Glaesserella parasuis 1 738 species 0 7 155493 1 477 0 genus Gallibacterium anatis 750 1 0 species 477 10 118884 4867 no rank 0 32036 3 1043 0 clade 113267 1 Bathymodiolus septemdierum thioautotrophic gill symbiont 1040 0 species 2 species 0 1 410330 Calyptogena okutanii thioautotrophic gill symbiont 1 1541743 genus 0 1 0 species 1 Candidatus Ruthia magnifica 386487 1 clade 0 1 1 198346 Candidatus Baumannia cicadellinicola 186490 1 0 species 1 genus 0 2156 1 1608298 Thiolapillus brandeum 1076588 1 0 species 2156 1 1524249 genus 0 16 Pseudohongiella spirulinae 1 1249552 species 0 16 655184 2 0 genus 4 1 1427364 Candidatus Thioglobus singularis 2 species 0 species 0 2 Candidatus Thioglobus autotrophicus 1 1705394 341 Sedimenticola 2 349742 genus 1 0 1647 species 0 1306 Sedimenticola thiotaurini 1 1543721 1934945 4 Immundisolibacterales 6 7515 1 0 order 7509 0 1 family 1934946 3 6 Immundisolibacteraceae 0 1 genus 7503 Immundisolibacter 12 1934947 2 7491 0 species 1810504 1 Immundisolibacter cernigliae 1 0 order 72278 Oceanospirillales 1460 135619 62 1 0 family 3026 194 Oceanospirillaceae 135620 11 Bacterioplanes 1 2 1537406 genus 1 0 714 0 species 713 Bacterioplanes sanyensis 1249553 1 1 Thalassolituus 187492 2 0 1 genus 414 Thalassolituus oleivorans 1 187493 species 0 413 Marinobacterium 1 2 48075 genus 1 0 1635 1634 species 0 1 1821621 Marinobacterium aestuarii 1 188907 40 genus 0 Oleispira antarctica 1 188908 species 0 40 29 0 genus 28253 3 no rank 0 17 1 196814 species 0 17 Marinomonas sp. MWYL1 1 400668 0 species 10 Marinomonas posidonica 936476 1 1 119864 Marinomonas mediterranea 2 species 0 54360 family 1 0 30 28256 1339 Halomonadaceae 2 42054 2 Chromohalobacter 2590 genus 1 0 2588 species 0 1 158080 Chromohalobacter salexigens Halomonas 11 2745 15 1 0 genus 29932 1074 species 0 1 213554 Halomonas campaniensis 1 507626 Halomonas chromatireducens 1651 species 0 1 1897729 Halomonas aestuarii 4509 species 0 1269 species 0 1 1178482 Halomonas huangheensis 14410 0 no rank 2609666 8 940 species 0 1 1610576 Halomonas sp. R57-5 Halomonas sp. GT 1 1971364 species 0 423 4840 0 species 1883416 1 Halomonas sp. 1513 1952 species 0 1 1118153 Halomonas sp. GFAJ-1 1130 species 0 1 1962264 Halomonas sp. 'Soap Lake #7' Halomonas sp. 'Soap Lake #6' 1949203 1 0 species 1130 1051 species 0 1 1504981 Halomonas sp. KO116 0 species 2944 Halomonas sp. SF2003 2136172 1 311 0 species 115561 1 Halomonas hydrothermalis 475662 1 Halomonas beimenensis 6697 0 species Halotalea 6 376488 2 0 1 genus 5698 1 376489 Halotalea alkalilenta 5692 species 0 3 114403 668 no rank 0 3 genus 0 1 1495768 species 0 3 Candidatus Evansia muelleri 1 1495769 663 genus 0 1 235572 663 species 0 1 91844 Candidatus Portiera aleyrodidarum 1 114185 2 genus 0 2 0 species 114186 1 Candidatus Carsonella ruddii 204286 2 Cobetia 4 2594 1 0 genus Cobetia marina 1 28258 species 0 2590 3 504090 1 Kushneria 3740 genus 0 1 698828 1 Kushneria konosiri 2656 0 species 157779 1 Kushneria marisflavi 1083 0 species 2 404432 7 Salinicola 7799 genus 0 1 Salinicola tamaricis 1 1771309 species 0 7792 family 0 320 2 191033 Oleiphilus 304 141450 2 0 1 genus 320 species 0 16 Oleiphilus messinensis 1 141451 0 family 1641 1920240 4 6 Kangiella 4 261963 genus 1 0 1641 16 species 0 1 261964 Kangiella koreensis 1092 species 0 1 1561924 Kangiella profundi Kangiella sediminilitoris 1 1144748 species 0 527 20 Alcanivoracaceae 8 224372 family 1 0 7706 6525 genus 0 1 6 59753 Alcanivorax 258 0 species 1025 Alcanivorax pacificus 1306787 1 Alcanivorax xenomutans 1094342 1 0 species 1701 416 0 species 59754 1 Alcanivorax borkumensis 2619 species 0 1 285091 Alcanivorax dieselolei 506 0 no rank 2638842 1 506 species 0 1 1113728 Alcanivorax sp. NBRC 101098 2025617 1 1161 0 genus 0 species 1161 Ketobacter alkanivorans 1917421 1 0 1 family 1930 Saccharospirillaceae 1 255527 4 2 Reinekea 230494 2 1 0 genus 1917 Reinekea forsetii 1 1336806 species 0 1915 0 genus 12 1445504 1 species 0 12 Gynuella sunshinyii 1 1445505 224379 2 1835 0 family 7 Hahella 2 158481 genus 1 0 1835 Hahella chejuensis 158327 1 0 species 1828 order 1 0 266198 Xanthomonadales 3041 53 135614 210031 family 0 1 38 32033 2865 Xanthomonadaceae Stenotrophomonas 1298 40323 9 1 0 genus 64277 4 196198 21114 no rank 0 0 species 3293 Stenotrophomonas sp. KCTC 12332 1793721 1 4679 0 species 2005046 1 Stenotrophomonas sp. WZN-1 5963 species 0 1 1827305 Stenotrophomonas sp. MYb57 0 species 7179 Stenotrophomonas sp. LM091 1904944 1 1 83617 Stenotrophomonas nitritireducens 3202 species 0 1 216778 Stenotrophomonas rhizophila 4306 species 0 1 995085 27683 species group 0 Stenotrophomonas maltophilia 40324 1 0 species 27683 Stenotrophomonas acidaminiphila 1 128780 species 0 6674 Xanthomonas 5118 17 338 genus 0 1 80811 2083 0 species 366650 1 Xanthomonas alfalfae 0 species 3794 Xanthomonas hortorum 56454 1 1 56460 Xanthomonas vesicatoria 3827 species 0 1 48664 Xanthomonas fragariae 2884 species 0 Xanthomonas campestris 1 339 species 0 10676 0 species 11957 Xanthomonas translucens 343 1 3462 species 0 1 53413 Xanthomonas axonopodis Xanthomonas vasicola 1 56459 species 0 2303 species 0 3061 Xanthomonas perforans 1 442694 species 0 3364 Xanthomonas albilineans 1 29447 12478 0 species group 643453 2 366648 1 Xanthomonas fuscans 3639 0 species species 0 8839 Xanthomonas citri 1 346 0 species 6565 Xanthomonas oryzae 347 1 Xanthomonas sacchari 56458 1 0 species 6052 species 0 944 Xanthomonas euvesicatoria 1 456327 1985254 1 Xanthomonas phaseoli 2243 0 species 1 2370 genus 0 860 0 species 860 Xylella fastidiosa 2371 1 29076 genus 0 1 5 68 Lysobacter 280 species 0 7643 Lysobacter antibioticus 1 84531 0 species 7539 Lysobacter capsici 435897 1 Lysobacter enzymogenes 1 69 species 0 7177 species 0 6437 Lysobacter gummosus 1 262324 0 1 genus 23946 Pseudoxanthomonas 80 83618 3 415229 1 Pseudoxanthomonas spadix 7395 0 species Pseudoxanthomonas suwonensis 1 314722 species 0 16471 83614 2 Luteimonas 3 8196 1 0 genus 0 species 8193 Luteimonas sp. 100111 2006110 1 1 0 family 53126 Rhodanobacteraceae 119 1775411 14 4396 genus 1 0 2 242605 7 Luteibacter 4389 0 species 242606 1 Luteibacter rhizovicinus 2 323413 Dokdonella 154 9771 genus 0 1 species 0 9617 Dokdonella koreensis 1 323415 0 genus 2053 2233801 1 species 0 2053 Xanthomonadales bacterium D13 1 2021234 29 Rhodanobacter 2 75309 genus 0 1 7994 7965 species 0 1 666685 Rhodanobacter denitrificans 25271 0 1 genus 231454 4 1919 Dyella 7390 0 species 445710 1 Dyella thiooxydans 0 species 8919 Dyella jiangningensis 1379159 1 1 231455 Dyella japonica 7043 species 0 70411 2 Frateuria 1 3522 0 1 genus Frateuria aurantia 81475 1 0 species 3521 order 1 0 42009 Alteromonadales 353 94 135622 3404 family 0 6 267889 5 28228 3214 genus 0 species 0 24 Colwellia beringensis 1 1967665 3 196834 no rank 0 3149 Colwellia sp. MT41 58049 1 0 species 2193 1 1816218 Colwellia sp. PAMC 20917 112 species 0 species 0 844 Colwellia sp. PAMC 21821 1 1816219 0 species 41 Colwellia psychrerythraea 28229 1 1518149 1 0 genus 190 species 0 190 Thalassotalea crassostreae 1 1763536 0 1 family 18828 204 Alteromonadaceae 72275 26 261825 1 0 genus 18 Agarivorans gilvus 680279 1 0 species 18 415 genus 0 1 1621534 415 0 species 326544 1 Paraglaciecola psychrophila 42 0 genus 89404 2 Glaciecola nitratireducens 300231 1 0 species 15 2618684 1 27 0 no rank 983545 1 Glaciecola sp. 4H-3-7+YE-5 27 0 species 13063 0 1 genus 2742 10 Marinobacter 334 2743 1 Marinobacter hydrocarbonoclasticus 795 0 species Marinobacter salarius 1 1420917 species 0 927 Marinobacter psychrophilus 330734 1 0 species 1059 6595 0 no rank 83889 3 1671721 1 Marinobacter sp. CP1 3150 0 species species 0 2334 Marinobacter sp. LQ44 1 1749259 1 490759 Marinobacter sp. BSs20148 1111 species 0 1420916 1 Marinobacter similis 1426 0 species 1265 0 species 1033846 1 Marinobacter adhaerens 662 0 species 1874317 1 Marinobacter salinus 1751872 1 626 0 genus 1526571 1 Lacimicrobium alkaliphilum 626 0 species 10 226 Alteromonas 9 4460 genus 0 1 Alteromonas macleodii 1 28108 species 0 121 Alteromonas stellipolaris 233316 1 0 species 279 Alteromonas mediterranea 1 314275 species 0 29 14 species 0 1 715451 Alteromonas naphthalenivorans Alteromonas australica 1 589873 species 0 698 no rank 0 2975 3 2614992 266 species 0 1 1777491 Alteromonas sp. Mac1 2058133 1 Alteromonas sp. MB-3u-76 2319 0 species Alteromonas sp. RW2A1 1 1917158 species 0 390 Alteromonas addita 1 287094 species 0 335 545 Pseudoalteromonadaceae 25 267888 family 0 1 6902 3 Pseudoalteromonas 53246 24 1 0 genus 6357 species 0 32 Pseudoalteromonas issachenkonii 1 152297 4 0 species 267375 1 Pseudoalteromonas marina 298657 1 Pseudoalteromonas spongiae 429 0 species 228 1 Pseudoalteromonas haloplanktis 14 0 species species 0 1228 Pseudoalteromonas atlantica 1 288 no rank 0 1303 5 194690 0 species 2 Pseudoalteromonas sp. SM9913 234831 1 4 species 0 1 1761891 Pseudoalteromonas sp. 13-15 463 species 0 1 1514074 Pseudoalteromonas sp. NC201 species 0 6 Pseudoalteromonas sp. Bsw20308 1 283699 828 species 0 1 1720343 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 0 45 Pseudoalteromonas arctica 1 394751 Pseudoalteromonas tunicata 314281 1 0 species 8 526 0 species 28109 1 Pseudoalteromonas nigrifaciens 1 166935 Pseudoalteromonas translucida 4 species 0 6 species 0 1 28107 Pseudoalteromonas espejiana 161398 1 Pseudoalteromonas phenolica 21 0 species 34 species 0 1 176102 Pseudoalteromonas agarivorans Pseudoalteromonas rubra 1 43658 species 0 268 1 247523 Pseudoalteromonas aliena 10 species 0 1017 species 0 1 1348114 Pseudoalteromonas piratica 798 species 0 1 43662 Pseudoalteromonas piscicida Pseudoalteromonas luteoviolacea 1 43657 species 0 606 1 species 0 1 43659 Pseudoalteromonas tetraodonis 267894 2 0 family 54 2 67572 genus 0 54 13 species 0 1 357794 Psychromonas ingrahamii 41 no rank 0 1 2614957 314282 1 Psychromonas sp. CNPT3 41 0 species 135 0 1 family 267893 6 Idiomarinaceae 64 3 Idiomarina 5 135575 genus 0 1 71 0 no rank 34 2614829 2 Idiomarina sp. OT37-5b 2100422 1 0 species 8 species 0 26 Idiomarina sp. X4 1 2055892 1096243 1 Idiomarina piscisalsi 31 0 species species 0 3 Idiomarina loihiensis 1 135577 267891 1 0 family 189 genus 0 189 1 58050 species 0 189 Moritella viscosa 1 80854 Ferrimonadaceae 1 267892 2 1 0 family 2517 2516 genus 0 1 44011 2516 0 species 44012 1 Ferrimonas balearica 9627 family 0 1 25 267890 29 Shewanellaceae 1 0 genus 9598 Shewanella 36 22 24 382 species 0 1 62322 Shewanella baltica 1 359303 Shewanella loihica 998 species 0 Shewanella putrefaciens 1 24 species 0 4372 225848 1 Shewanella psychrophila 265 0 species Shewanella pealeana 70864 1 0 species 9 Shewanella sediminis 1 271097 species 0 338 614 species 0 1 60961 Shewanella woodyi 1 192073 Shewanella denitrificans 237 species 0 1 260364 Shewanella marisflavi 232 species 0 196818 6 0 no rank 1236 14 species 0 1 94122 Shewanella sp. ANA-3 60480 1 Shewanella sp. MR-4 11 0 species 957 0 species 351745 1 Shewanella sp. W3-18-1 14 0 species 2029986 1 Shewanella sp. WE21 Shewanella sp. Pdp11 2059264 1 0 species 211 Shewanella sp. MR-7 1 60481 species 0 29 Shewanella japonica 93973 1 0 species 6 Shewanella frigidimarina 56812 1 0 species 9 50 species 0 1 2018305 Shewanella bicestrii 0 species 256 Shewanella halifaxensis 271098 1 0 species 235 Shewanella piezotolerans 404011 1 Shewanella oneidensis 70863 1 0 species 20 39 0 species 60217 1 Shewanella violacea 264 0 species 60478 1 Shewanella amazonensis 0 order 14 135615 1 1 868 14 family 0 genus 0 14 1 869 870 1 Dichelobacter nodosus 14 0 species 3632 Betaproteobacteria 330 28216 class 0 1 1398650 206389 21 Rhodocyclales 296 86082 1 0 order 5 75787 Rhodocyclaceae 521 16167 family 1 0 3723 0 no rank 75788 1 0 species 3723 Rhodocyclaceae bacterium 1898103 1 1 146937 genus 0 7302 1 146939 Azospira oryzae 7302 species 0 4621 0 1 genus 551759 2 Aromatoleum 13 1 551760 Aromatoleum aromaticum 4608 species 0 Azonexaceae 6 2008795 3 0 1 family 3006 3000 genus 1 0 2 73029 Dechloromonas 4 Dechloromonas aromatica 1 259537 species 0 2996 12 2008794 2528 Zoogloeaceae 66613 family 0 1 genus 0 1 35612 326 Thauera 6 33057 2 2609274 no rank 0 14340 Thauera sp. MZ1T 1 85643 species 0 7090 0 species 7250 Thauera sp. K11 2005884 1 1134435 1 Thauera humireducens 8481 0 species Thauera chlorobenzoica 1 96773 species 0 5940 1 59405 Thauera aromatica 6525 species 0 28473 genus 0 1 5 12960 Azoarcus 312 2067960 1 Azoarcus sp. SY39 3358 0 species Azoarcus olearius 1 418699 species 0 5396 2 2629479 no rank 0 19407 0 species 9607 Azoarcus sp. KH32C 748247 1 Azoarcus sp. CIB 1 198107 species 0 9800 119066 9 5156 0 no rank 1381133 1 8 0 genus 1 669502 Candidatus Profftella armatura 8 species 0 3809 0 1 genus 327159 2 2 Candidatus Accumulibacter 3807 species 0 1 327160 Candidatus Accumulibacter phosphatis 4 33055 2 Kinetoplastibacterium 1053 genus 1 0 1 233181 Kinetoplastibacterium blastocrithidii 272 species 0 1 33056 Candidatus Kinetoplastibacterium crithidii 767 species 0 species 0 12 Candidatus Kinetoplastibacterium oncopeltii 1 994696 genus 0 285 1 1301080 0 species 285 Candidatus Nasuia deltocephalinicola 1160784 1 1 0 genus 189384 1 Candidatus Tremblaya princeps 1 189385 species 0 1 35 206351 Neisseriales 32 62286 order 0 1 Neisseriaceae 9 481 21 0 1 family 22475 71 1 623 0 genus 1 72 Simonsiella muelleri 623 species 0 1 1193515 37 genus 0 37 0 species 1196083 1 Snodgrassella alvi 1 0 genus 2482 Eikenella 11 538 2 2471 species 0 1 539 Eikenella corrodens genus 1 0 2987 Vitreoscilla 3 3 59 species 0 2976 Vitreoscilla filiformis 1 63 8 0 no rank 2627922 1 0 species 8 Vitreoscilla sp. C1 96942 1 1 421605 no rank 0 9 Neisseriaceae bacterium DSM 100970 1 2052837 species 0 9 16328 0 1 genus 482 12 1090 Neisseria 0 no rank 1600 2623750 2 1476 species 0 1 655307 Neisseria sp. KEM232 0 species 124 Neisseria sp. 10022 1853276 1 Neisseria lactamica 486 1 0 species 255 2942 species 0 1 495 Neisseria elongata 3372 species 0 1 1853278 Neisseria sp. 10023 1 326523 Neisseria zoodegmatis 207 species 0 Neisseria mucosa 488 1 0 species 218 12 species 0 1 28091 Neisseria weaveri 0 species 4625 Neisseria meningitidis 487 1 species 0 1551 Neisseria gonorrhoeae 1 485 456 0 species 490 1 Neisseria sicca Chromobacteriaceae 2055 13 1499392 family 1 0 39779 2 168470 Laribacter 11 4262 genus 1 0 168471 1 Laribacter hongkongensis 4251 0 species 5222 0 1 genus 568394 2 Pseudogulbenkiania 1 5221 0 no rank 2642558 1 5221 species 0 1 748280 Pseudogulbenkiania sp. NH8B 1 Aquaspirillum 2 187 genus 0 1 5110 1 2620219 5109 no rank 0 5109 0 species 1938604 1 Aquaspirillum sp. LM1 0 1 genus 5449 Jeongeupia 3 885864 2 1 2619593 no rank 0 5446 Jeongeupia sp. USM3 1906741 1 0 species 5446 90153 4 17681 0 no rank 17681 genus 0 1 4 535 38 Chromobacterium 1 1108595 Chromobacterium vaccinii 5789 species 0 2641838 1 6059 0 no rank Chromobacterium sp. ATCC 53434 2059672 1 0 species 6059 536 1 Chromobacterium violaceum 5795 0 species 32003 37 881 Nitrosomonadales 45873 0 1 order 69 Nitrosomonadaceae 12 206379 family 1 0 7878 Nitrosomonas 5 7 914 genus 1 0 2604 12 species 0 1 915 Nitrosomonas europaea 0 species 1155 Nitrosomonas eutropha 916 1 2609265 2 0 no rank 1318 1276 0 species 261292 1 Nitrosomonas sp. Is79A3 Nitrosomonas sp. AL212 1 153948 species 0 42 36 0 species 44577 1 Nitrosomonas ureae 78 0 species 44574 1 Nitrosomonas communis 5205 0 1 genus 35798 4 8 Nitrosospira 0 species 3825 Nitrosospira briensis 35799 1 Nitrosospira lacus 1 1288494 species 0 1235 1231 1 Nitrosospira multiformis 137 0 species 32011 9 0 family 8853 81682 3 Methylovorus 1 6218 1 0 genus 2735 no rank 0 1 2634027 Methylovorus sp. MP688 1 887061 species 0 2735 3482 0 species 266009 1 Methylovorus glucosotrophus genus 0 915 2 359407 Methylotenera mobilis 1 359408 species 0 97 species 0 818 Methylotenera versatilis 1 1055487 genus 0 669 1 404 Methylobacillus flagellatus 405 1 0 species 669 408 genus 0 1 16 408 0 no rank 2630143 1 408 0 species 1662285 1 Methylophilus sp. TWE2 643 0 genus 1679002 2 Candidatus Methylopumilus turicensis 1 1581680 species 0 238 405 species 0 1 1581557 Candidatus Methylopumilus planktonicus family 1 0 7747 4 Gallionellaceae 4 90627 genus 0 5044 1 314343 Sideroxydans lithotrophicus 63745 1 0 species 5044 1 Gallionella 96 2 1 0 genus 2699 2698 species 0 1 370405 Gallionella capsiferriformans 7256 family 0 3 2772226 935200 2 1 Sulfuricella 4590 1 0 genus 0 species 4589 Sulfuricella denitrificans 649841 1 1 1778653 genus 0 2666 0 no rank 2666 2637784 1 1 1985873 Sulfuriferula sp. AH1 2666 species 0 549 Sterolibacteriaceae 2008793 5 1 0 family 9248 41 Sulfuritalea 1054211 2 1 0 genus 3614 3573 0 species 748811 1 Sulfuritalea hydrogenivorans Methyloversatilis 14 2 378210 genus 0 1 5085 no rank 0 5071 1 2639971 1 1842540 Methyloversatilis sp. RAC08 5071 species 0 3 2008790 22 Thiobacillaceae 4010 family 1 0 5 Thiobacillus 2 919 genus 0 1 3988 3983 0 species 36861 1 Thiobacillus denitrificans 1187708 order 1 0 225 80840 10314 Burkholderiales 80864 56 3483 Comamonadaceae 231964 0 1 family 0 1 genus 5843 Ottowia 2 219181 3 0 no rank 3393 2645081 1 Ottowia sp. oral taxon 894 1 1658672 species 0 3393 1 2109914 Ottowia sp. KADR8-3 2448 species 0 4142 genus 0 1 238749 1 1546149 Diaphorobacter polyhydroxybutyrativorans 4142 species 0 2 352450 Simplicispira 3 4745 genus 0 1 0 species 4742 Simplicispira sp. SC1-8 2109915 1 665874 2 0 genus 2265 0 no rank 2265 2626134 2 Limnohabitans sp. 63ED37-2 1678128 1 0 species 1050 1215 0 species 1678129 1 Limnohabitans sp. 103DPR2 13390 genus 0 1 2 174951 Ramlibacter 87 0 species 13303 Ramlibacter tataouinensis 94132 1 6 Verminephrobacter 2 364316 genus 0 1 8110 Verminephrobacter eiseniae 364317 1 0 species 8104 genus 1 0 14236 758 Hydrogenophaga 4 47420 1 1763535 Hydrogenophaga crassostreae 2645 species 0 2 2610897 no rank 0 10833 1842537 1 Hydrogenophaga sp. RAC07 6063 0 species 795665 1 Hydrogenophaga sp. PBC 4770 0 species genus 0 6544 1 2678886 1 2116657 Melaminivora sp. SC2-7 6544 species 0 5 80865 798 Delftia 17534 genus 1 0 7526 no rank 0 2 2613839 species 0 4638 Delftia sp. Cs1-4 1 742013 2888 species 0 1 1920191 Delftia sp. HK171 0 species 5188 Delftia tsuruhatensis 180282 1 0 species 4022 Delftia acidovorans 80866 1 283 4 1 Comamonas 15650 0 1 genus 1082851 1 Comamonas serinivorans 4836 0 species 2663 species 0 1 225992 Comamonas kerstersii Comamonas testosteroni 1 285 species 0 8150 44 Melaminivora 2 1649468 genus 0 1 2953 no rank 0 2909 1 2641902 0 species 2909 Melaminivora sp. SC2-9 2109913 1 2 2490452 genus 0 8568 Comamonadaceae bacterium A1 1458425 1 0 species 3429 0 species 5139 Comamonadaceae bacterium B1 1458426 1 genus 0 1 6704 Alicycliphilus 69 2 201096 Alicycliphilus denitrificans 1 179636 species 0 6635 888 genus 0 1 1436289 0 species 888 Candidatus Symbiobacter mobilis 1436290 1 genus 1 0 17329 47 Rhodoferax 5 28065 Rhodoferax saidenbachensis 1 1484693 species 0 1962 1 192843 Rhodoferax ferrireducens 2465 species 0 1 1842727 Rhodoferax koreense 8360 species 0 0 species 4495 Rhodoferax antarcticus 81479 1 14823 1 0 genus 52972 3 Polaromonas 3 1 2638319 no rank 0 9020 Polaromonas sp. JS666 1 296591 species 0 9020 Polaromonas naphthalenivorans 1 216465 species 0 5800 45405 genus 0 1 5 34072 Variovorax 1279 2 663243 no rank 0 16999 4796 0 species 1795631 1 Variovorax sp. PAMC 28711 Variovorax sp. PMC12 1 2126319 species 0 12203 Variovorax boronicumulans 436515 1 0 species 8618 18509 species 0 1 34073 Variovorax paradoxus 12916 9 Acidovorax 461 39352 0 1 genus species 0 4077 Acidovorax citrulli 1 80869 0 species 5290 Acidovorax ebreus 721785 1 species 0 4896 Acidovorax avenae 1 80867 no rank 0 19925 4 2684926 1 358220 Acidovorax sp. KKS102 4040 species 0 Acidovorax sp. RAC01 1 1842533 species 0 4587 species 0 5221 Acidovorax sp. T1 1 1858609 6077 species 0 1 232721 Acidovorax sp. JS42 0 species 4703 Acidovorax sp. NA3 553814 1 0 no rank 7472 80841 2 1608 0 species 1834205 1 Burkholderiales bacterium YL45 5864 species 0 1 1469502 Burkholderiales bacterium GJ-E10 17 224471 64860 no rank 0 316612 2 Methylibium 284 8822 1 0 genus 8538 species 0 1 105560 Methylibium petroleiphilum Rubrivivax 8 28067 2 1 0 genus 9401 9393 0 species 28068 1 Rubrivivax gelatinosus Leptothrix 4 88 2 1 0 genus 6123 Leptothrix cholodnii 34029 1 0 species 6119 212743 2 9 Rhizobacter 8678 1 0 genus species 0 8669 Rhizobacter gummiphilus 1 946333 7269 genus 1 0 2 65047 Mitsuaria 57 7212 no rank 0 1 2648776 Mitsuaria sp. 7 1658665 1 0 species 7212 2 32012 Thiomonas 128 7158 genus 0 1 species 0 7030 Thiomonas intermedia 1 926 1 0 genus 1557 365 Roseateles 93681 2 Roseateles depolymerans 1 76731 species 0 1192 1 0 genus 5340 Paucibacter 6 318147 2 no rank 0 5334 1 2642959 Paucibacter sp. KCTC 42545 1 1768242 species 0 5334 10512 species 0 1 413882 [Polyangium] brachysporum 28 75682 Oxalobacteraceae 47 112229 family 0 1 1 0 genus 18761 10 Collimonas 202907 4 7454 species 0 1 279058 Collimonas arenae 0 species 5032 Collimonas fungivorans 158899 1 6265 0 species 279113 1 Collimonas pratensis 846 1 0 genus 14 0 species 14 Oxalobacter formigenes 847 1 7 29580 Janthinobacterium 1180 27261 genus 1 0 7269 species 0 1 55508 Janthinobacterium agaricidamnosum 2610881 4 0 no rank 15827 species 0 4556 Janthinobacterium sp. LM6 1 1938606 0 species 7548 Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 1 Janthinobacterium sp. B9-8 1 1236179 species 0 897 0 species 2826 Janthinobacterium sp. Marseille 375286 1 0 species 2985 Janthinobacterium svalbardensis 368607 1 963 6 1553 Herbaspirillum 23127 1 0 genus 0 species 3279 Herbaspirillum hiltneri 341045 1 6767 0 species 92645 1 Herbaspirillum frisingense 0 species 5566 Herbaspirillum seropedicae 964 1 2624150 1 1780 0 no rank species 0 1780 Herbaspirillum sp. meg3 1 2025949 species 0 4182 Herbaspirillum rubrisubalbicans 1 80842 149698 6 Massilia 949 40665 1 0 genus Massilia sp. B2 1 2045208 species 0 7594 7963 0 species 1141883 1 Massilia putida 2 2609279 15324 no rank 0 species 0 9736 Massilia sp. WG5 1 1707785 5588 0 species 1678028 1 Massilia sp. NR 4-1 1 2072590 Massilia sp. ZMN-3 8835 species 0 genus 1 0 2354 Herminiimonas 499 3 303379 species 0 293 Herminiimonas arsenicoxydans 1 204773 Herminiimonas arsenitoxidans 1 1809410 species 0 1562 38 506 Alcaligenaceae 1364 190003 family 1 0 1 305976 genus 0 1751 2640016 1 1751 0 no rank 1 1007105 Pusillimonas sp. T7-7 1751 species 0 1472344 1 0 genus 821 821 species 0 1 1472345 Basilea psittacipulmonis 0 genus 196 90243 1 Oligella urethralis 1 90245 species 0 196 6 222 1898 Achromobacter 66273 genus 0 1 26485 0 species 85698 1 Achromobacter xylosoxidans 1 217203 Achromobacter spanius 9620 species 0 2626865 1 6600 0 no rank 0 species 6600 Achromobacter sp. AONIH1 1758194 1 Achromobacter denitrificans 32002 1 0 species 16860 0 species 4810 Achromobacter insolitus 217204 1 517 17 Bordetella 1469 100780 0 1 genus Bordetella hinzii 103855 1 0 species 8816 species 0 14471 Bordetella bronchiseptica 1 518 species 0 2945 Bordetella genomosp. 9 1 1416803 519 1 Bordetella parapertussis 13108 0 species Bordetella bronchialis 463025 1 0 species 9637 1 521 Bordetella avium 2517 species 0 5364 0 species 463014 1 Bordetella flabilis Bordetella trematum 1 123899 species 0 2813 1416806 1 Bordetella genomosp. 8 5439 0 species 6811 species 0 1 520 Bordetella pertussis Bordetella petrii 94624 1 0 species 3813 2016 species 0 1 35814 Bordetella holmesii 2630031 1 0 no rank 4521 4521 0 species 1697043 1 Bordetella sp. H567 1 1331258 Bordetella pseudohinzii 5535 species 0 Bordetella genomosp. 13 1 463040 species 0 5218 463024 1 Bordetella genomosp. 6 6287 0 species genus 0 3436 2 290425 species 0 1379 Advenella kashmirensis 1 310575 302406 1 Advenella mimigardefordensis 2057 0 species Castellaniella 3 2 359336 genus 0 1 6977 75697 1 Castellaniella defragrans 6974 0 species 2 507 2 Alcaligenes 2779 genus 1 0 Alcaligenes faecalis 1 511 species 0 2777 29574 2 0 genus 317 Taylorella equigenitalis 1 29575 species 0 313 Taylorella asinigenitalis 1 84590 species 0 4 4479 0 1 genus 1921582 2 Orrella 144 1 1851544 Orrella dioscoreae 4335 species 0 0 genus 830 1100891 1 643674 1 Paenalcaligenes hominis 830 0 species 570866 0 1 family 119060 83 3096 Burkholderiaceae 71505 genus 1 0 12 1822464 Paraburkholderia 743 Paraburkholderia phenoliruptrix 1 252970 species 0 5654 Paraburkholderia terrae 311230 1 0 species 5759 169430 1 Paraburkholderia hospita 5693 0 species 75105 1 Paraburkholderia caribensis 9647 0 species 5074 species 0 1 134537 Paraburkholderia fungorum 4578 0 species 36873 1 Paraburkholderia xenovorans Paraburkholderia phytofirmans 1 261302 species 0 7089 species 0 9141 Paraburkholderia sprentiae 1 948107 0 species 6892 Paraburkholderia phymatum 148447 1 0 no rank 4707 2615204 1 Paraburkholderia sp. SOS3 1926494 1 0 species 4707 6528 0 species 2026199 1 Paraburkholderia aromaticivorans 2571159 1 0 genus 1137 1137 0 species 412963 1 Paraburkholderia rhizoxinica 0 genus 164 44013 3 Polynucleobacter duraquae 1 1835254 species 0 5 576610 1 Polynucleobacter necessarius 146 0 species 13 species 0 1 576611 Polynucleobacter asymbioticus genus 1 0 326389 10956 Burkholderia 41 32008 159063 0 species group 87882 19 5093 species 0 1 1503055 Burkholderia territorii 1 488729 Burkholderia metallica 2608 species 0 95486 1 Burkholderia cenocepacia 23648 0 species 1 482957 Burkholderia lata 6747 species 0 1 101571 Burkholderia ubonensis 14577 species 0 488731 1 Burkholderia seminalis 4306 0 species 60550 1 Burkholderia pyrrocinia 1258 0 species 0 species 4631 Burkholderia latens 488446 1 87883 1 Burkholderia multivorans 14322 0 species 488447 1 Burkholderia contaminans 7389 0 species 6818 0 species 60552 1 Burkholderia vietnamiensis 28812 species 0 1 292 Burkholderia cepacia 6179 species 0 1 488732 Burkholderia diffusa species 0 3662 [Pseudomonas] mesoacidophila 1 265293 Burkholderia stabilis 95485 1 0 species 5408 Burkholderia pseudomultivorans 1 1207504 species 0 6914 Burkholderia dolosa 152500 1 0 species 4380 species 0 8230 Burkholderia ambifaria 1 152480 4081 0 species 1503054 1 Burkholderia stagnalis 111527 7 0 species group 56571 21257 species 0 1 28450 Burkholderia pseudomallei 0 species 5330 Burkholderia sp. MSMB0266 1637837 1 species 0 4485 Burkholderia oklahomensis 1 342113 Burkholderia sp. MSMB617WGS 1637831 1 0 species 3943 13373 1 Burkholderia mallei 6076 0 species species 0 10222 Burkholderia thailandensis 1 57975 0 species 5258 Burkholderia sp. MSMB0852 1637841 1 species 0 6893 Burkholderia plantarii 1 41899 0 no rank 67942 2613784 11 species 0 7727 Burkholderia sp. CCGE1001 1 640510 4202 species 0 1 1795043 Burkholderia sp. PAMC 26561 758796 1 Burkholderia sp. RPE67 9254 0 species Burkholderia sp. CCGE1003 640512 1 0 species 5533 8242 0 species 1097668 1 Burkholderia sp. YI23 0 species 6491 Burkholderia sp. HB1 1678678 1 5204 species 0 1 1795874 Burkholderia sp. PAMC 28687 Burkholderia sp. Bp5365 1740162 1 0 species 5998 5763 species 0 1 1468409 Burkholderia sp. 2002721687 Burkholderia sp. Bp7605 1740163 1 0 species 3833 5695 0 species 416344 1 Burkholderia sp. KJ006 10647 species 0 1 28095 Burkholderia gladioli Burkholderia glumae 1 337 species 0 14317 10 93217 Pandoraea 437 36841 genus 0 1 445709 1 Pandoraea thiooxydans 7649 0 species 2527 species 0 1 656178 Pandoraea vervacti 3362 0 species 93218 1 Pandoraea apista 5736 0 species 573737 1 Pandoraea oxalativorans Pandoraea pulmonicola 93221 1 0 species 3667 0 species 2773 Pandoraea norimbergensis 93219 1 1 656179 Pandoraea faecigallinarum 2717 species 0 0 species 6395 Pandoraea pnomenusa 93220 1 Pandoraea sputorum 93222 1 0 species 1578 106589 9 Cupriavidus 2537 73806 1 0 genus 7070 species 0 1 68895 Cupriavidus basilensis 0 species 6002 Cupriavidus metallidurans 119219 1 1 106590 Cupriavidus necator 11701 species 0 9775 species 0 1 82541 Cupriavidus gilardii no rank 0 20993 2 2640874 1389192 1 Cupriavidus sp. USMAHM13 13788 0 species species 0 7205 Cupriavidus sp. USMAA2-4 1 876364 9951 species 0 1 367825 Cupriavidus sp. USMAA1020 0 species 5777 Cupriavidus pinatubonensis 248026 1 6824 0 genus 1827195 1 0 species 6824 Burkholderia sp. RPE64 758793 1 48736 5 Ralstonia 682 51104 0 1 genus 6055 species 0 1 105219 Ralstonia mannitolilytica species 0 7988 Ralstonia pickettii 1 329 1 305 Ralstonia solanacearum 31347 species 0 0 species 5032 Ralstonia insidiosa 190721 1 7913 no rank 0 2 33809 1 543913 beta proteobacterium CB 28 species 0 7885 0 species 1904640 1 Betaproteobacteria bacterium GR16-43 180 68525 subphylum 0 472931 754 Deltaproteobacteria 28221 115 0 1 class 453091 3 213113 1202 order 0 1202 0 1 family 117942 3 1 Desulfurellaceae 1 84404 genus 0 1054 0 species 1054 Hippea maritima 84405 1 147 0 genus 33001 1 0 species 147 Desulfurella acetivorans 33002 1 214 Desulfovibrionales 213115 23 1 0 order 57817 1 0 family 50005 Desulfovibrionaceae 891 194924 17 0 genus 2238 2794998 1 0 species 2238 Desulfovibrio salexigens 880 1 9 genus 0 1 41707 9 species 0 1 29546 Lawsonia intracellularis 0 1 genus 10412 128 Pseudodesulfovibrio 2035811 4 0 species 4074 Pseudodesulfovibrio aespoeensis 182210 1 Pseudodesulfovibrio indicus 1 1716143 species 0 4975 Pseudodesulfovibrio profundus 1 57320 species 0 1235 1 2582840 4049 genus 0 873 1 Desulfovibrio africanus 4049 0 species 32406 0 1 genus 872 9 2191 Desulfovibrio 0 species 1418 Desulfovibrio alaskensis 58180 1 0 species 7945 Desulfovibrio magneticus 184917 1 3577 0 species 876 1 Desulfovibrio desulfuricans 0 species 8157 Desulfovibrio vulgaris 881 1 1307 species 0 1 1725232 Candidatus Desulfovibrio trichonymphae 1 44742 Desulfovibrio fairfieldensis 3064 species 0 no rank 0 1209 1 2593640 1209 species 0 1 631220 Desulfovibrio sp. G11 3538 species 0 1 901 Desulfovibrio piger 986 1 0 family 213117 2 1 Desulfohalobiaceae 985 0 genus 45662 1 985 species 0 1 45663 Desulfohalobium retbaense 213116 3 6612 0 family genus 0 1 6612 4 Desulfomicrobium 3 898 0 species 3050 Desulfomicrobium baculatum 899 1 1 132132 Desulfomicrobium orale 3558 species 0 8268 1 0 order 453227 4 6 Desulfarculales 1 0 family 8262 3 Desulfarculaceae 453228 3 Desulfarculus 1169 453229 2 0 1 genus 8259 Desulfarculus baarsii 1 453230 species 0 7090 15 213118 8 Desulfobacterales 15717 order 0 1 7158 family 0 1 6 213121 Desulfobulbaceae 2 0 genus 1994 893 1 0 species 1994 Desulfobulbus sp. ORNL 1986146 1 53318 1 986 0 genus 986 species 0 1 65555 Desulfocapsa sulfexigens Desulfurivibrio 1168 427922 2 1 0 genus 4129 2961 species 0 1 427923 Desulfurivibrio alkaliphilus 109168 1 0 genus 47 Desulfotalea psychrophila 84980 1 0 species 47 Desulfobacteraceae 246 213119 8 1 0 family 8551 1 218207 genus 0 3009 Desulfatibacillum alkenivorans 259354 1 0 species 3009 28222 1 16 0 genus species 0 16 Desulfobacula toluolica 1 28223 607 0 1 genus 2295 2 Desulfobacterium 2 Desulfobacterium autotrophicum 1 2296 species 0 605 4673 genus 0 1 3 896 5 Desulfococcus 2141 species 0 1 897 Desulfococcus multivorans 2527 0 species 181663 1 Desulfococcus oleovorans 273543 order 0 1 37 29 Myxococcales 2990 0 suborder 185209 80811 25 1 0 family 46140 154 Anaeromyxobacteraceae 1524215 5 1 0 genus 45986 Anaeromyxobacter 338 161492 4 2620896 2 23699 0 no rank Anaeromyxobacter sp. K 1 447217 species 0 12389 0 species 11310 Anaeromyxobacter sp. Fw109-5 404589 1 21949 species 0 1 161493 Anaeromyxobacter dehalogenans 31 9 1420 Myxococcaceae 81456 0 1 family genus 1 0 58316 1654 Myxococcus 5 32 0 species 8305 Myxococcus stipitatus 83455 1 1 34 Myxococcus xanthus 10731 species 0 Myxococcus fulvus 33 1 0 species 29217 1297742 1 Myxococcus hansupus 8409 0 species 83461 3 Corallococcus 361 21720 0 1 genus 1 35 Myxococcus macrosporus 11778 species 0 Corallococcus coralloides 1 184914 species 0 9581 Archangiaceae 1299 39 8 1 0 family 49426 11786 genus 1 0 2 44 Melittangium 1 11785 species 0 1 83453 Melittangium boletus 47 1 12358 0 genus 0 species 12358 Archangium gephyra 48 1 11045 genus 0 1 2 40 Stigmatella 4 Stigmatella aurantiaca 1 41 species 0 11041 genus 1 0 12938 1 Cystobacter 2 42 12937 0 species 43 1 Cystobacter fuscus 3 1524213 Vulgatibacteraceae 489 8187 family 0 1 Vulgatibacter 6 2 1524214 genus 1 0 7698 0 species 7692 Vulgatibacter incomptus 1391653 1 8 80812 suborder 0 69972 55218 family 0 1 5 49 9 Polyangiaceae Sorangium 13 2 39643 genus 0 1 42181 1 56 Sorangium cellulosum 42168 species 0 0 1 genus 13028 Chondromyces 13 50 2 species 0 13015 Chondromyces crocatus 1 52 14754 0 1 family 1055686 3 161 Sandaracinaceae 1055688 2 10 Sandaracinus 14593 1 0 genus Sandaracinus amylolyticus 927083 1 0 species 14583 0 suborder 15372 224462 3 232 Kofleriaceae 224464 3 0 1 family 15372 Haliangium 11 162027 2 0 1 genus 15140 80816 1 Haliangium ochraceum 15129 0 species order 1 0 12877 1 Syntrophobacterales 8 213462 3 213465 Syntrophobacteraceae 2 1848 family 1 0 1846 genus 1 0 2 29526 Syntrophobacter 1 1845 0 species 119484 1 Syntrophobacter fumaroxidans family 1 0 11028 1168 Syntrophaceae 4 213468 0 genus 1797 60892 1 0 species 1797 Desulfobacca acetoxidans 60893 1 0 genus 3015 2357 1 1 2358 Desulfomonile tiedjei 3015 species 0 43773 1 5048 0 genus 1 316277 Syntrophus aciditrophicus 5048 species 0 1 0 order 82913 Desulfuromonadales 920 69541 24 family 0 1 26149 182 Desulfuromonadaceae 9 213421 14460 0 1 genus 890 3 10 Desulfuromonas no rank 0 9103 1 2614637 species 0 9103 Desulfuromonas sp. DDH964 1 1823759 5347 0 species 1603606 1 Desulfuromonas soudanensis 11507 1 0 genus 18 5 3 Pelobacter 1021 0 species 29542 1 Pelobacter acetylenicus 3123 species 0 1 19 Pelobacter carbinolicus 2775 no rank 0 1 2620299 2775 species 0 1 1842532 Pelobacter sp. SFB93 Pelobacter propionicus 29543 1 0 species 4585 14 213422 Geobacteraceae 26 55844 family 1 0 1 0 genus 4244 Geoalkalibacter 3 392332 2 4241 0 species 483547 1 Geoalkalibacter subterraneus 0 1 genus 51574 Geobacter 79 28231 11 345632 1 Geobacter pickeringii 6304 0 species Geobacter lovleyi 1 313985 species 0 1685 Geobacter uraniireducens 1 351604 species 0 3871 Geobacter bemidjiensis 225194 1 0 species 8413 1203471 1 Geobacter daltonii 1523 0 species 35554 1 Geobacter sulfurreducens 2717 0 species 1 1340425 Geobacter anodireducens 4204 species 0 no rank 0 15121 2 2627627 Geobacter sp. M18 443143 1 0 species 9330 Geobacter sp. M21 443144 1 0 species 5791 Geobacter metallireducens 1 28232 species 0 7657 class 1 0 19840 Epsilonproteobacteria 14 65 29547 order 0 541 4 235899 2795691 2 0 family 502 1 0 genus 502 1 Nitratiruptor 269258 2 1 2624044 no rank 0 501 501 species 0 1 387092 Nitratiruptor sp. SB155-2 family 0 39 2 224467 191291 2 Nautilia 1 39 1 0 genus 0 species 38 Nautilia profundicola 244787 1 19285 order 0 1 60 213849 2 Campylobacterales 2 Campylobacteraceae 37 72294 family 0 1 11296 24 194 genus 0 7511 14 0 species 1244531 1 Campylobacter iguaniorum 0 species 8 Campylobacter hyointestinalis 198 1 Campylobacter insulaenigrae 260714 1 0 species 9 Campylobacter cuniculorum 374106 1 0 species 10 6 species 0 1 1031542 Campylobacter volucris 2232 species 0 1 76517 Campylobacter hominis 1 75658 Campylobacter lanienae 6 species 0 1 species 0 1 827 Campylobacter ureolyticus 201 1 Campylobacter lari 676 0 species 14 0 species 195 1 Campylobacter coli 2593542 4 0 no rank 1784 0 species 892 Campylobacter sp. RM8964 1660074 1 887 species 0 1 1660076 Campylobacter sp. RM12175 0 species 3 Campylobacter sp. RM16704 1500960 1 species 0 2 Campylobacter sp. RM6137 1 1660073 1 824 Campylobacter gracilis 711 species 0 199 1 Campylobacter concisus 5 0 species 1 28898 Campylobacter helveticus 3 species 0 species 0 7 Campylobacter subantarcticus 1 497724 0 species 1075 Campylobacter sputorum 206 1 1 200 Campylobacter curvus 5 species 0 897 0 species 196 1 Campylobacter fetus 0 species 38 Campylobacter jejuni 197 1 Campylobacter pinnipediorum 1 1965231 species 0 9 1 522485 Campylobacter avium 1 species 0 genus 1 0 3731 1 Sulfurospirillum 8 57665 0 no rank 1010 2618290 3 1001 0 species 1986224 1 Sulfurospirillum sp. SL2-1 6 species 0 1 220622 Sulfurospirillum sp. JPD-1 3 species 0 1 1581011 Sulfurospirillum sp. UCH001 66821 1 Sulfurospirillum multivorans 1291 0 species 0 species 1410 Sulfurospirillum halorespirans 194424 1 1 65553 Sulfurospirillum deleyianum 8 species 0 Sulfurospirillum cavolei 1 366522 species 0 11 no rank 0 52 4 2321108 5 0 genus 2321187 1 5 0 species 1850254 1 Arcobacter sp. LPB0137 16 no rank 0 1 2321207 Arcobacter sp. L 944547 1 0 species 16 31 0 genus 28196 2 28199 1 Arcobacter nitrofigilis 18 0 species 13 0 species 28197 1 Arcobacter butzleri family 0 360 5 2771472 2 269260 1 Nitratifractor 296 genus 1 0 295 species 0 1 269261 Nitratifractor salsuginis Sulfurovum 1 3 265570 genus 0 1 64 206403 1 Sulfurovum lithotrophicum 50 0 species 13 no rank 0 1 2646778 0 species 13 Sulfurovum sp. NBC37-1 387093 1 3 2771471 family 0 838 0 genus 468 202746 2 39766 1 Sulfurimonas denitrificans 451 0 species Sulfurimonas autotrophica 202747 1 0 species 17 370 0 genus 286130 1 370 species 0 1 148813 Sulfuricurvum kujiense family 0 1 6789 Helicobacteraceae 1 14 72293 6773 1 0 genus 209 12 Helicobacter 13 species 0 1172 Helicobacter mustelae 1 217 Helicobacter pylori 210 1 0 species 1434 Helicobacter cetorum 138563 1 0 species 1147 1 2593540 no rank 0 1145 1145 species 0 1 222136 Helicobacter sp. MIT 01-6242 Helicobacter hepaticus 1 32025 species 0 23 species 0 1 Helicobacter acinonychis 1 212 Helicobacter felis 214 1 0 species 1150 2 0 species 76936 1 Helicobacter typhlonius species 0 5 Helicobacter himalayensis 1 1591088 Helicobacter bilis 37372 1 0 species 661 Helicobacter cinaedi 1 213 species 0 20 1 843 genus 0 15 15 species 0 1 844 Wolinella succinogenes 6838 class 0 6 1553900 6044 1 0 order 213481 4 Bdellovibrionales 1 3 213483 3 Bdellovibrionaceae 6043 family 0 1 0 genus 6040 958 2 Bdellovibrio exovorus 453816 1 0 species 13 Bdellovibrio bacteriovorus 959 1 0 species 6027 794 0 order 2024979 2 127 0 family 1652132 1 1652133 1 0 genus 127 Halobacteriovorax marinus 97084 1 0 species 127 667 family 0 1 263369 667 0 genus 146784 1 species 0 667 Bacteriovorax stolpii 1 960 517 28211 4678 Alphaproteobacteria 1894627 class 1 0 216238 1 0 order 204455 82 1554 Rhodobacterales 214684 family 0 1 81 31989 1549 Rhodobacteraceae genus 0 1145 1 1759396 2622455 1 1145 0 no rank 1920883 1 Marivivens sp. JLT3646 1145 0 species 1 2211641 genus 0 1428 1428 species 0 1 245188 Loktanella vestfoldensis Confluentimicrobium 1 2 1609958 genus 1 0 2701 2643318 1 2700 0 no rank 2700 0 species 1609966 1 Confluentimicrobium sp. EMB200-NS6 1763 0 genus 53945 3 species 0 733 Octadecabacter antarcticus 1 1217908 species 0 27 Octadecabacter temperatus 1 1458307 Octadecabacter arcticus 1 53946 species 0 1003 1 Leisingera 191028 2 0 1 genus 2388 species 0 2387 Leisingera methylohalidivorans 1 133924 1 299261 genus 0 3814 Tateyamaria omphalii 299262 1 0 species 3814 5820 0 1 genus 60136 3 1 Sulfitobacter 196795 1 3692 0 no rank 0 species 3692 Sulfitobacter sp. AM1-D1 1917485 1 0 species 2127 Sulfitobacter pseudonitzschiae 1402135 1 genus 0 1 5849 Pannonibacter 4 2 227873 Pannonibacter phragmitetus 121719 1 0 species 5845 159345 2 1 Roseibacterium 6254 0 1 genus Roseibacterium elongatum 159346 1 0 species 6253 genus 0 1 26874 321 Rhodobacter 5 1060 species 0 11117 Rhodobacter sphaeroides 1 1063 0 no rank 11206 196779 2 1 1850250 Rhodobacter sp. LPB0142 3651 species 0 Rhodobacter sp. CZR27 1 2033869 species 0 7555 1 1061 Rhodobacter capsulatus 4230 species 0 1 74030 genus 0 3183 3183 0 species 215743 1 Roseovarius mucosus Labrenzia 17 4 478070 genus 1 0 8369 3111 0 species 187304 1 Labrenzia aggregata no rank 0 5241 2 2648686 0 species 3257 Labrenzia sp. CP4 1674922 1 1984 0 species 2021862 1 Labrenzia sp. VG12 0 1 genus 1105 1 Rhodobaca 119541 2 Rhodobaca barguzinensis 441209 1 0 species 1104 188905 1 1893 0 genus 1 2645469 no rank 0 1893 Jannaschia sp. CCS1 290400 1 0 species 1893 Defluviimonas 14 2 1097466 genus 1 0 5251 Defluviimonas alba 1335048 1 0 species 5237 10624 genus 0 2 263377 0 no rank 3242 2640570 1 1792508 1 Yangia sp. CCB-MM3 3242 0 species Thiobacimonas profunda 1229727 1 0 species 7382 2 2433 genus 0 1050 1 2434 Roseobacter denitrificans 619 species 0 Roseobacter litoralis 1 42443 species 0 431 302485 5 7 Phaeobacter 10951 0 1 genus 1580596 1 Phaeobacter piscinae 3109 0 species 221822 1 Phaeobacter inhibens 2761 0 species species 0 1050 Phaeobacter porticola 1 1844006 species 0 4024 Phaeobacter gallaeciensis 1 60890 875170 5 Celeribacter 18 9898 1 0 genus Celeribacter indicus 1 1208324 species 0 3167 1222 0 species 1397108 1 Celeribacter marinus Celeribacter manganoxidans 1411902 1 0 species 2941 2550 species 0 1 1758178 Celeribacter ethanolicus genus 0 1 4439 2 Sagittula 2 58842 1 2624628 no rank 0 4437 4437 0 species 2009329 1 Sagittula sp. P11 Thalassococcus 1 436357 genus 0 2 1423 0 genus 1579315 1 1423 species 0 1 1579316 Halocynthiibacter arcticus 6897 genus 1 0 2 74032 Antarctobacter 1 1 74033 Antarctobacter heliothermus 6896 species 0 genus 1 0 4720 1 Marinovum 2 367771 4719 0 species 42444 1 Marinovum algicola 1 309512 genus 0 2878 Dinoroseobacter shibae 1 215813 species 0 2878 1 1649279 genus 0 959 species 0 959 Ruegeria mobilis 1 379347 0 genus 52 1284657 1 Planktomarina temperata 1 1284658 species 0 52 97050 2 0 genus 3431 no rank 0 918 1 2625375 918 species 0 1 292414 Ruegeria sp. TM1040 Ruegeria pomeroyi 89184 1 0 species 2513 genus 0 3224 2 92944 Ketogulonicigenium vulgare 1 92945 species 0 1525 92947 1 Ketogulonicigenium robustum 1699 0 species 5268 0 no rank 58840 2 Rhodobacteraceae bacterium QY30 1 2033435 species 0 4286 Rhodobacteraceae bacterium 1904441 1 0 species 982 4 Thioclava 285107 2 0 1 genus 3637 Thioclava nitratireducens 1915078 1 0 species 3633 Rhodovulum 39 34008 4 0 1 genus 22585 2 2631432 no rank 0 13320 species 0 11287 Rhodovulum sp. MB263 1 308754 1564506 1 Rhodovulum sp. P5 2033 0 species Rhodovulum sulfidophilum 1 35806 species 0 9226 Pelagibaca 1 360528 2 0 1 genus 4264 1 1250539 Pelagibaca abyssi 4263 species 0 1 0 genus 38996 Paracoccus 440 265 9 species 0 3408 Paracoccus contaminans 1 1945662 34004 1 Paracoccus aminovorans 5887 0 species 0 species 5334 Paracoccus zhejiangensis 1077935 1 11164 0 species 147645 1 Paracoccus yeei 1 2065379 Paracoccus sp. CBA4604 1930 species 0 34003 1 Paracoccus aminophilus 1416 0 species 1 266 Paracoccus denitrificans 7018 species 0 no rank 0 2399 1 246570 Paracoccus sp. BM15 1 1529068 species 0 2399 73610 order 1 0 20 204458 1193 Caulobacterales 72417 family 1 0 19 76892 Caulobacteraceae 1124 no rank 0 865 1 81440 0 species 865 Caulobacteraceae bacterium OTSz_A_272 1759059 1 20 2 6 Phenylobacterium 6732 0 1 genus 1 284016 Phenylobacterium zucineum 6726 species 0 2 76890 5 Asticcacaulis 3206 genus 0 1 1 78587 Asticcacaulis excentricus 3201 species 0 40524 genus 0 1 6 75 Caulobacter 881 69666 1 Caulobacter mirabilis 7232 0 species Caulobacter vibrioides 155892 1 0 species 9956 2648921 1 0 no rank 9290 0 species 9290 Caulobacter sp. K31 366602 1 Caulobacter henricii 1 69395 species 0 7561 species 0 5604 Caulobacter segnis 1 88688 346 Brevundimonas 41275 7 1 0 genus 19966 2622653 3 9919 0 no rank Brevundimonas sp. LM2 1 1938605 species 0 3235 Brevundimonas sp. DS20 1 1532555 species 0 3229 3455 0 species 1827469 1 Brevundimonas sp. GW460-12-10-14-LB2 0 species 3080 Brevundimonas naejangsanensis 588932 1 0 species 2966 Brevundimonas subvibrioides 74313 1 0 species 3655 Brevundimonas vesicularis 41276 1 1191478 1 0 order 1427 1 1191479 1427 family 0 162171 1 1427 0 genus 0 species 1427 Magnetococcus marinus 1124597 1 5 2800060 3410 order 0 family 0 1 3410 138 Hyphomonadaceae 5 69657 2723 1 72 0 genus 72 0 species 2724 1 Hirschia baltica Hyphomonas 1 85 3 1 0 genus 3200 species 0 1857 Hyphomonas neptunium 1 81032 1 2630699 1342 no rank 0 0 species 1342 Hyphomonas sp. Mor2 1906738 1 Rhizobiales 4782 204 356 order 1 0 1061008 family 0 1 359823 Bradyrhizobiaceae 2106 25 41294 374 11 Bradyrhizobium 3984 199379 0 1 genus 18578 0 species 1274631 1 Bradyrhizobium icense 108482 0 no rank 2631580 6 species 0 17050 Bradyrhizobium sp. BTAi1 1 288000 376 1 Bradyrhizobium sp. 16010 0 species 114615 1 Bradyrhizobium sp. ORS 278 20103 0 species species 0 14143 Bradyrhizobium sp. CCGE-LA001 1 1223566 species 0 15020 Bradyrhizobium sp. ORS 285 1 115808 2057741 1 Bradyrhizobium sp. SK17 26156 0 species Bradyrhizobium oligotrophicum 44255 1 0 species 13153 0 species 28128 Bradyrhizobium diazoefficiens 1355477 1 375 1 Bradyrhizobium japonicum 27054 0 species 20240 genus 0 1 3 911 11 Nitrobacter Nitrobacter hamburgensis 1 912 species 0 11683 1 913 Nitrobacter winogradskyi 8546 species 0 7348 0 genus 40136 1 7348 species 0 1 40137 Oligotropha carboxidovorans 342 Rhodopseudomonas 2 1073 genus 1 0 90113 89771 species 0 1 1076 Rhodopseudomonas palustris genus 0 1 5970 246 Variibacter 2 1649510 1 1333996 Variibacter gotjawalensis 5724 species 0 85413 5 Bosea 41 34667 1 0 genus 11481 species 0 1 1526658 Bosea vaviloviae 23145 no rank 0 3 2653178 Bosea sp. PAMC 26642 1 1792307 species 0 6422 Bosea sp. RAC05 1842539 1 0 species 8084 8639 species 0 1 2015316 Bosea sp. AS-1 82115 53 1399 Rhizobiaceae 226036 0 1 family 34019 6 4 Liberibacter 316 0 1 genus Candidatus Liberibacter solanacearum 556287 1 0 species 1 Candidatus Liberibacter asiaticus 1 34021 species 0 3 293 species 0 1 309868 Candidatus Liberibacter americanus Candidatus Liberibacter africanus 34020 1 0 species 3 12 species 0 1 1273132 Liberibacter crescens 0 genus 11098 323620 1 2643062 1 0 no rank 11098 Shinella sp. HZN7 879274 1 0 species 11098 35 227290 no rank 0 150897 6388 genus 1 0 2 1525371 Neorhizobium 1 species 0 6387 Neorhizobium galegae 1 399 357 7 120 Agrobacterium 32420 1 0 genus species 0 3860 Agrobacterium rhizogenes 1 359 2 2632611 no rank 0 7201 5563 0 species 1842536 1 Agrobacterium sp. RAC06 1 861208 Agrobacterium sp. H13-3 1638 species 0 373 1 Agrobacterium vitis 4712 0 species 0 species group 16527 1183400 2 1176649 1 Agrobacterium fabrum 2934 0 species species 0 13593 Agrobacterium tumefaciens 1 358 112089 genus 0 1 26 379 Rhizobium 5338 8447 0 species 396 1 Rhizobium phaseoli Rhizobium leguminosarum 1 384 species 0 32718 1 29449 Rhizobium etli 12294 species 0 Rhizobium tropici 398 1 0 species 4113 42254 0 no rank 2613769 20 species 0 1 Rhizobium sp. N871 1 1703968 1703964 1 Rhizobium sp. N621 175 0 species 2940 0 species 2028343 1 Rhizobium sp. 10195 species 0 4698 Rhizobium sp. NXC14 1 1981173 species 0 3423 Rhizobium sp. NT-26 1 1125847 684 0 species 1703961 1 Rhizobium sp. N1314 Rhizobium sp. Y9 1914541 1 0 species 1623 Rhizobium sp. IRBG74 1 424182 species 0 2722 Rhizobium sp. N731 1 1703966 species 0 684 0 species 4414 Rhizobium sp. NXC24 2048897 1 1 2020312 Rhizobium sp. CIAT894 3222 species 0 7 species 0 1 1703962 Rhizobium sp. N1341 Rhizobium sp. ACO-34A 1 1571470 species 0 3462 0 species 4240 Rhizobium sp. N324 1703969 1 species 0 1720 Rhizobium sp. TAL182 1 2020313 0 species 2884 Rhizobium sp. S41 1869170 1 0 species 3893 Rhizobium sp. IE4771 1301032 1 species 0 175 Rhizobium sp. N6212 1 1703965 9 0 species 1703967 1 Rhizobium sp. N741 1278 species 0 1 2020311 Rhizobium sp. Kim5 6925 0 species 56730 1 Rhizobium gallicum 62326 0 no rank 227292 10 genus 1 0 45053 Sinorhizobium 1277 7 28105 0 species 9705 Sinorhizobium meliloti 382 1 1 194963 Sinorhizobium americanum 5254 species 0 0 species group 17939 663276 1 Sinorhizobium fredii 1 380 species 0 17939 2613772 2 8691 0 no rank 794846 1 Sinorhizobium sp. CCBAU 05631 6202 0 species species 0 2489 Sinorhizobium sp. RAC02 1 1842534 1 110321 Sinorhizobium medicae 2187 species 0 0 1 genus 17273 411 Ensifer 106591 3 Ensifer sojae 716925 1 0 species 10112 0 species 6750 Ensifer adhaerens 106592 1 Xanthobacteraceae 267 7 335928 family 0 1 26301 7415 genus 1 0 2 6 Azorhizobium 3 7412 0 species 7 1 Azorhizobium caulinodans 152053 2 27 Starkeya 9888 1 0 genus Starkeya novella 921 1 0 species 9861 Xanthobacter 8 2 279 genus 0 1 8731 1 280 Xanthobacter autotrophicus 8723 species 0 47568 0 1 family 31993 6 371 Methylocystaceae 62 Methylocystis 3 133 genus 1 0 29581 Methylocystis bryophila 655015 1 0 species 16836 no rank 0 12683 1 2625913 12683 0 species 187303 1 Methylocystis sp. SC2 17616 genus 0 1 2 425 12 Methylosinus 426 1 Methylosinus trichosporium 17604 0 species 209 Brucellaceae 20 118882 family 1 0 17618 234 14 5270 Brucella 11050 1 0 genus 1 236 Brucella ovis 516 species 0 0 no rank 2294 2632610 4 1885919 1 Brucella sp. 141012304 694 0 species 1067 species 0 1 1844051 Brucella sp. 09RB8910 1 1149952 Brucella sp. 09RB8471 525 species 0 species 0 8 Brucella sp. 2002734562 1 1891098 518 0 species 29461 1 Brucella suis 29459 1 Brucella melitensis 518 0 species 120577 1 Brucella ceti 90 0 species 1 981386 Brucella vulpis 1063 species 0 species 0 86 Brucella abortus 1 235 1 36855 Brucella canis 89 species 0 1 444163 Brucella microti 519 species 0 87 species 0 1 120576 Brucella pinnipedialis 1 0 genus 6359 13 Ochrobactrum 528 5 Ochrobactrum anthropi 529 1 0 species 3466 Ochrobactrum sp. A44 271865 1 0 species 1030 species 0 727 Ochrobactrum pseudogrignonense 1 419475 1 571256 Ochrobactrum pituitosum 1123 species 0 152367 family 0 1 15 119045 232 Methylobacteriaceae 0 genus 55031 2282523 3 species 0 16872 Methylobacterium populi 1 223967 29429 1 Methylobacterium zatmanii 12728 0 species 25431 0 species 408 1 Methylobacterium extorquens 0 1 genus 9853 7 Microvirga 186650 2 9846 0 species 1882682 1 Microvirga ossetica 5890 Methylobacterium 407 9 0 1 genus 87251 0 species 14149 Methylobacterium phyllosphaerae 418223 1 3 2615210 30859 no rank 0 Methylobacterium sp. C1 1 1479019 species 0 7396 species 0 12184 Methylobacterium sp. 4-46 1 426117 Methylobacterium sp. AMS5 1 925818 species 0 11279 0 species 4808 Methylobacterium nodulans 114616 1 0 species 11147 Methylobacterium aquaticum 270351 1 0 species 12702 Methylobacterium oryzae 334852 1 species 0 7696 Methylobacterium radiotolerans 1 31998 family 0 1 3808 Rhodobiaceae 2 3 119043 Parvibaculum 4 256616 2 0 1 genus 3806 1 256618 Parvibaculum lavamentivorans 3802 species 0 Hyphomicrobiaceae 468 45401 17 1 0 family 62190 851 Rhodoplanes 29407 2 1 0 genus 13347 1 2619116 12496 no rank 0 674703 1 Rhodoplanes sp. Z2-YC6860 12496 0 species 59282 2 Blastochloris 6 8507 0 1 genus Blastochloris viridis 1079 1 0 species 8501 14080 genus 0 1 4 46913 Devosia 69 14011 0 no rank 196773 3 1643450 1 Devosia sp. H5989 3508 0 species Devosia sp. A16 1 1736675 species 0 7462 species 0 3041 Devosia sp. I507 1 2083786 81 4 335 Hyphomicrobium 18257 0 1 genus 1 53399 Hyphomicrobium denitrificans 11218 species 0 1 1427356 Hyphomicrobium nitrativorans 3088 species 0 no rank 0 3616 1 2619925 Hyphomicrobium sp. MC1 1 717785 species 0 3616 1068 1 0 genus 4480 species 0 4480 Rhodomicrobium vannielii 1 1069 896 genus 0 1 119044 Candidatus Filomicrobium marinum 1608628 1 0 species 896 2155 genus 0 1 2 1082930 36 Pelagibacterium 1 531813 Pelagibacterium halotolerans 2119 species 0 45404 4 0 family 19894 2 532 Beijerinckia 1 7332 genus 1 0 Beijerinckia indica 533 1 0 species 7331 2 120652 Methylocella 15 12562 genus 0 1 199596 1 Methylocella silvestris 12547 0 species 22953 0 1 family 255475 7 Aurantimonadaceae 5 4 293088 Martelella 98 15378 genus 1 0 1 2629616 no rank 0 5805 Martelella sp. AD-3 686597 1 0 species 5805 1486262 1 Martelella endophytica 4958 0 species 1 293089 Martelella mediterranea 4517 species 0 414371 2 7 Aureimonas 7570 1 0 genus 2615206 1 7563 0 no rank 1 1349819 Aureimonas sp. AU20 7563 species 0 family 1 0 79589 Phyllobacteriaceae 336 19 69277 2 245876 65 Nitratireductor 2227 genus 0 1 472175 1 Nitratireductor basaltis 2162 0 species 2 31988 Aminobacter 9 10183 genus 0 1 Aminobacter aminovorans 83263 1 0 species 10174 2465 genus 0 1 28100 1 1867719 Phyllobacterium zundukense 2465 species 0 449972 2 Chelativorans 3 2358 1 0 genus 2643807 1 2355 0 no rank 0 species 2355 Chelativorans sp. BNC1 266779 1 68287 9 Mesorhizobium 2109 60789 1 0 genus Mesorhizobium ciceri 1 39645 species 0 8573 0 species 5875 Mesorhizobium australicum 536018 1 species 0 5958 Mesorhizobium loti 1 381 8835 0 no rank 325217 1 8835 species 0 1 278153 Mesorhizobium sp. WSM1497 2066070 1 Mesorhizobium japonicum 11027 0 species 4964 species 0 1 1670800 Mesorhizobium sp. B7 7575 species 0 1 71433 Mesorhizobium amorphae Mesorhizobium opportunistum 1 593909 species 0 5873 2 274591 Hoeflea 15 1231 genus 0 1 1 2614931 no rank 0 1216 species 0 1216 Hoeflea sp. IMCC20628 1 1620421 0 no rank 18014 119042 6 0 1 genus 7146 21 Hartmannibacter 1572860 2 1482074 1 Hartmannibacter diazotrophicus 7125 0 species 1734920 2 Pseudorhodoplanes 1 8092 0 1 genus species 0 8091 Pseudorhodoplanes sinuspersici 1 1235591 2776 genus 0 1 2 1484898 218 Methyloceanibacter Methyloceanibacter caenitepidi 1384459 1 0 species 2558 1 0 family 677 Bartonellaceae 4 772 17 773 16 Bartonella 3 673 0 1 genus Bartonella australis 388640 1 0 species 1 56426 1 Bartonella clarridgeiae 17 0 species Bartonella apis 1686310 1 0 species 570 35 0 no rank 2645622 5 0 species 14 Bartonella sp. JB63 1933907 1 1 1933912 Bartonella sp. Raccoon60 2 species 0 1933906 1 Bartonella sp. JB15 14 0 species 3 species 0 1 1933910 Bartonella sp. A1379B 1933904 1 Bartonella sp. WD16.2 2 0 species Bartonella ancashensis 1318743 1 0 species 5 4 species 0 1 774 Bartonella bacilliformis 4 species 0 1 33047 Bartonella vinsonii 0 species 2 Bartonella quintana 803 1 15 species 0 1 33045 Bartonella grahamii 0 species 15 Bartonella henselae 38323 1 1 85701 Bartonella tribocorum 2 species 0 4 2036754 2 Chelatococcaceae 19388 family 0 1 Chelatococcus 60 28209 3 0 1 genus 19386 1 2638111 no rank 0 12601 1 1702325 Chelatococcus sp. CO-6 12601 species 0 0 species 6725 Chelatococcus daeguensis 444444 1 267820 order 1 0 80 204457 1840 Sphingomonadales Erythrobacteraceae 29 22 335929 family 1 0 55228 9292 0 1 genus 361177 4 1120 Altererythrobacter 0 species 2227 Altererythrobacter epoxidivorans 361183 1 Altererythrobacter atlanticus 1 1267766 species 0 4558 1387 0 species 476157 1 Altererythrobacter ishigakiensis 3852 0 genus 2800685 1 0 species 3852 Altererythrobacter marensis 543877 1 2186 genus 0 1 2800682 2186 species 0 1 645517 Altererythrobacter namhicola 125 Croceicoccus 3 1295327 genus 0 1 8083 5300 0 species 450378 1 Croceicoccus marinus Croceicoccus naphthovorans 1 1348774 species 0 2658 0 genus 7308 1855416 2 Erythrobacter seohaensis 1 266951 species 0 4335 2973 0 species 192812 1 Erythrobacter flavus 6 2800788 no rank 0 17157 8258 genus 0 1 3 1111 564 Porphyrobacter 2683265 2 0 no rank 7694 0 species 3719 Porphyrobacter HT-58-2 2023229 1 1 1896196 Porphyrobacter sp. LM 6 3975 species 0 8899 1 0 genus 1041 3 1128 Erythrobacter 3964 species 0 1 39960 Erythrobacter litoralis Porphyrobacter neustonensis 1112 1 0 species 3807 genus 0 2799 2 2800681 0 species 2022 Erythrobacter gangjinensis 502682 1 777 0 species 1648404 1 Erythrobacter atlanticus 2800686 2 4522 0 genus Altererythrobacter mangrovi 1982042 1 0 species 1158 3364 species 0 1 692370 Altererythrobacter dongtanensis 1778 Sphingomonadaceae 41297 57 1 0 family 210752 genus 1 0 5534 Sphingorhabdus 5 3 1434046 5529 no rank 0 2 2614947 0 species 2096 Sphingorhabdus sp. M41 1806885 1 3433 0 species 2077182 1 Sphingorhabdus sp. YGSMI21 1554 Sphingomonas 15 13687 genus 1 0 77608 15462 species 0 1 2 160791 6711 Sphingomonas wittichii 8751 0 strain 1283312 1 Sphingomonas sp. DC-6 0 species 6287 Sphingomonas panacis 1560345 1 1 1549858 Sphingomonas taxi 6487 species 0 Sphingomonas koreensis 1 93064 species 0 1333 29501 0 no rank 196159 6 5639 species 0 1 1390395 Sphingomonas sp. LK11 6833 0 species 1961362 1 Sphingomonas sp. NIC1 species 0 2374 Sphingomonas sp. KC8 1 1030157 4073 0 species 1938607 1 Sphingomonas sp. LM7 1327635 1 Sphingomonas sp. Cra20 4107 0 species Sphingomonas sp. MM-1 1 745310 species 0 6475 0 species 7414 Sphingomonas sanxanigenens 397260 1 Sphingomonas melonis 1 152682 species 0 2249 species 0 7321 Sphingomonas hengshuiensis 1 1609977 2709685 1 0 genus 3780 0 species 3780 Sphingorhabdus flavimaris 266812 1 5 165696 Novosphingobium 473 21713 genus 1 0 1 205844 Novosphingobium pentaromativorans 3089 species 0 48935 1 Novosphingobium aromaticivorans 5114 0 species 5548 0 no rank 2644732 1 5548 species 0 1 702113 Novosphingobium sp. PP1Y 7489 0 species 158500 1 Novosphingobium resinovorum 2469 genus 0 1 150203 no rank 0 2469 1 2626550 2469 0 species 1842535 1 Blastomonas sp. RAC04 Sphingopyxis 535 10 165697 genus 1 0 35300 4207 0 species 1515612 1 Sphingopyxis fribergensis 3331 0 species 117207 1 Sphingopyxis alaskensis 0 species 4481 Sphingopyxis granuli 267128 1 0 species 9355 Sphingopyxis macrogoltabida 33050 1 10255 0 no rank 2614943 4 species 0 2352 Sphingopyxis sp. 113P3 1 292913 1913578 1 Sphingopyxis sp. LPB0140 501 0 species species 0 4155 Sphingopyxis sp. MG 1 1866325 3247 species 0 1 1357916 Sphingopyxis sp. QXT-31 species 0 3136 Sphingopyxis terrae 1 33052 165695 15 Sphingobium 3563 46381 1 0 genus 1155 species 0 1 332055 Sphingobium indicum 14313 0 no rank 2611147 6 1843368 1 Sphingobium sp. RAC03 2308 0 species 1306 0 species 484429 1 Sphingobium sp. YBL2 1 1315974 Sphingobium sp. TKS 3579 species 0 2937 0 species 1855519 1 Sphingobium sp. EP60837 Sphingobium sp. SYK-6 1 627192 species 0 2367 species 0 1816 Sphingobium sp. MI1205 1 407020 5384 species 0 1 120107 Sphingobium cloacae 0 species 1998 Sphingobium japonicum 332056 1 Sphingobium hydrophobicum 1673076 1 0 species 1485 13690 1 Sphingobium yanoikuyae 7181 0 species Sphingobium baderi 1 1332080 species 0 3609 1 46429 Sphingobium chlorophenolicum 3926 species 0 0 species 3767 Sphingobium herbicidovorans 76947 1 6337 0 1 genus 1649486 2 Rhizorhabdus 290 Rhizorhabdus dicambivorans 1 1850238 species 0 6047 72173 2 Citromicrobium 3 4803 1 0 genus 1 2630544 no rank 0 4800 Citromicrobium sp. JL477 1 1634516 species 0 4800 genus 0 3500 1 541 3500 species 0 1 542 Zymomonas mobilis 1 2685927 1549 genus 0 0 species 1549 Sphingomonas sp. JJ-A5 1921510 1 1921002 4 1 Holosporales 1348 0 1 order 0 family 143 2100208 1 143 0 genus 1509243 1 0 species 143 Candidatus Nucleicultrix amoebiphila 1509244 1 44746 1 0 family 12 1 204454 no rank 0 12 endosymbiont of Acanthamoeba sp. UWC8 86106 1 0 species 12 1 1777752 1192 family 0 1 1521255 1192 genus 0 1192 species 0 1 91604 Candidatus Paracaedibacter acanthamoebae 1837 order 0 2 255473 1837 0 family 255474 2 1 0 genus 1837 Parvularcula 5 208215 2 0 species 1832 Parvularcula bermudensis 208216 1 7 82117 19202 no rank 0 7336 0 1 genus 1632780 2 Phreatobacter 15 0 species 7321 Phreatobacter sp. S-12 1868589 1 62654 2 0 clade 652 genus 1 0 652 Candidatus Puniceispirillum 2 2 767891 0 species 650 Candidatus Puniceispirillum marinum 767892 1 Polymorphum 10 2 991903 genus 1 0 10521 species 0 10511 Polymorphum gilvum 1 991904 693 genus 0 1 213485 349221 1 Micavibrio aeruginosavorus 693 0 species 204441 62 Rhodospirillales 1238 240304 0 1 order Acetobacteraceae 422 33 433 family 1 0 90476 1602345 1 1092 0 genus 0 species 1092 Parasaccharibacter apium 1510841 1 2773 1 0 genus 320496 2 Neoasaia 1 320497 1 Neoasaia chiangmaiensis 2772 0 species 11891 genus 0 1 3 125216 776 Roseomonas 2617492 1 0 no rank 4863 4863 0 species 2018065 1 Roseomonas sp. FDAARGOS_362 1 257708 Roseomonas gilardii 6252 species 0 153497 2 2 Kozakia 2720 1 0 genus species 0 2718 Kozakia baliensis 1 153496 19564 0 1 genus 522 3 663 Acidiphilium 8484 species 0 1 524 Acidiphilium cryptum Acidiphilium multivorum 1 62140 species 0 10417 91914 2 1 Asaia 1616 0 1 genus 1615 0 species 91915 1 Asaia bogorensis genus 0 1 5321 Gluconacetobacter 3 2 89583 0 species 5318 Gluconacetobacter diazotrophicus 33996 1 7809 0 genus 441 2 Gluconobacter albidus 318683 1 0 species 2566 Gluconobacter oxydans 442 1 0 species 5243 Komagataeibacter 16 5 1434011 genus 1 0 18172 1 1177712 Komagataeibacter medellinensis 2051 species 0 0 species 4327 Komagataeibacter europaeus 33995 1 Komagataeibacter xylinus 28448 1 0 species 7834 Komagataeibacter nataicola 265960 1 0 species 3944 3406 genus 0 1 2 364409 Granulibacter 2 1 364410 Granulibacter bethesdensis 3404 species 0 1 0 genus 15690 Acetobacter 6 434 8 1799 species 0 1 1633874 Acetobacter oryzifermentans 1 438 Acetobacter pasteurianus 4108 species 0 1 446692 Acetobacter senegalensis 2211 species 0 3107 0 subgenus 151157 1 1 435 Acetobacter aceti 3107 species 0 0 species 1443 Acetobacter persici 1076596 1 species 0 247 Acetobacter pomorum 1 65959 104102 1 Acetobacter tropicalis 2769 0 species 41295 28 3474 Rhodospirillaceae 148590 1 0 family 5 13134 Magnetospirillum 1659 32719 genus 1 0 1 84159 Magnetospirillum magneticum 11164 species 0 4186 0 species 55518 1 Magnetospirillum gryphiswaldense no rank 0 15710 2 2617991 1663591 1 Magnetospirillum sp. XM-1 6973 0 species species 0 8737 Magnetospirillum sp. ME-1 1 1639348 13680 1 0 genus 1543705 2 2 Nitrospirillum 0 species 13678 Nitrospirillum amazonense 28077 1 1 1804663 genus 0 368 Haematospirillum jordaniae 1549855 1 0 species 368 171436 2 Tistrella 816 10608 1 0 genus 1 171437 Tistrella mobilis 9792 species 0 1182780 1 0 genus 2111 0 no rank 2111 2685734 1 1288970 1 Magnetospira sp. QH-2 2111 0 species 1081 3 Rhodospirillum 4 10673 1 0 genus Rhodospirillum centenum 1 34018 species 0 5123 0 species 5546 Rhodospirillum rubrum 1085 1 Thalassospira 2 3 168934 genus 0 1 4124 220697 1 Thalassospira xiamenensis 1804 0 species 1 2048283 Thalassospira sp. CSC3H3 2318 species 0 1543704 2 3 Niveispirillum 3347 0 1 genus species 0 3344 Niveispirillum cyanobacteriorum 1 1612173 1263978 1 0 genus 6 Candidatus Endolissoclinum faulkneri 1263979 1 0 species 6 64156 0 1 genus 191 5 136 Azospirillum 13033 0 species 528244 1 Azospirillum thiophilum Azospirillum lipoferum 1 193 species 0 29708 Azospirillum humicireducens 1226968 1 0 species 5114 192 1 Azospirillum brasilense 16165 0 species Pararhodospirillum 7 2 1612157 genus 1 0 3324 species 0 3317 Pararhodospirillum photometricum 1 1084 0 order 1540 54526 6 1655514 5 1537 0 family 1 Candidatus Pelagibacter 198251 3 1 0 genus 25 species 0 21 Candidatus Pelagibacter ubique 1 198252 3 0 no rank 2647897 1 species 0 3 Candidatus Pelagibacter sp. IMCC9063 1 1002672 1655516 2 1512 0 no rank 1 744985 alpha proteobacterium HIMB59 1508 species 0 0 species 4 alpha proteobacterium HIMB5 859653 1 3 genus 0 1 2045213 3 0 species 1925548 1 Candidatus Fonsibacter ubiquis 41 766 order 0 1161 169 family 0 19 942 943 5 0 genus 46 6 0 no rank 106181 1 1 391036 Ehrlichia sp. HF 6 species 0 106178 4 40 0 species group Ehrlichia canis 1 944 species 0 7 Ehrlichia muris 35795 1 0 species 12 945 1 Ehrlichia chaffeensis 5 0 species 779 1 Ehrlichia ruminantium 16 0 species 3 33993 32 genus 0 1 951 Neorickettsia sennetsu 9 species 0 0 species 16 Neorickettsia risticii 950 1 1 33994 Neorickettsia helminthoeca 7 species 0 11 0 genus 768 3 species 0 4 Anaplasma centrale 1 769 3 species 0 1 770 Anaplasma marginale species group 0 4 1 106179 species 0 4 Anaplasma phagocytophilum 1 948 8 952 80 tribe 0 1 0 genus 80 2 Wolbachia 953 8 78 0 no rank 2640676 7 66084 1 Wolbachia sp. wRi 2 0 species 246273 1 Wolbachia endosymbiont of Cimex lectularius 3 0 species Wolbachia endosymbiont of Drosophila melanogaster 163164 1 0 species 7 Wolbachia endosymbiont of Onchocerca volvulus 77551 1 0 species 3 3 species 0 1 100901 Wolbachia endosymbiont of Onchocerca ochengi Wolbachia endosymbiont of Brugia malayi 1 80849 species 0 51 species 0 9 Wolbachia endosymbiont of Drosophila simulans 1 77038 family 0 984 19 775 33988 18 982 0 tribe 0 genus 3 69474 1 Orientia tsutsugamushi 1 784 species 0 3 1 0 genus 979 127 Rickettsia 780 17 114277 12 127 0 species group 1 33992 Rickettsia rhipicephali 2 species 0 species 0 2 Rickettsia japonica 1 35790 Rickettsia conorii 1 781 species 0 1 species 0 8 Rickettsia akari 1 786 1 42862 Rickettsia felis 46 species 0 9 0 species 47589 1 Rickettsia peacockii 226665 1 Rickettsia heilongjiangensis 4 0 species 33989 1 Rickettsia amblyommatis 2 0 species Rickettsia rickettsii 1 783 species 0 7 species 0 3 Rickettsia monacensis 1 109232 3 species 0 1 33991 Rickettsia montanensis 40 species 0 1 787 Rickettsia australis species group 0 720 2 1129742 Rickettsia bellii 1 33990 species 0 563 Rickettsia canadensis 1 788 species 0 157 2 114292 5 species group 0 species 0 4 Rickettsia typhi 1 785 1 0 species 782 1 Rickettsia prowazekii 2115980 1 2 0 genus 2115978 1 Candidatus Phycorickettsia trachydisci 2 0 species 1328881 2 0 family 3 1 0 genus 3 2 Candidatus Midichloria 411566 2 1 0 species 234827 1 Candidatus Midichloria mitochondrii 1 1699067 no rank 0 5 Rickettsiales bacterium Ac37b 1 1528098 species 0 5 2 2800059 1044 order 0 2 2800061 1044 family 0 9 Maricaulis 2 74317 genus 1 0 1044 1035 species 0 1 74318 Maricaulis maris 1807140 6 0 class 6055 389 Acidithiobacillales 6 225057 order 0 1 6055 1 Acidithiobacillaceae 5 225058 family 0 1 5666 Acidithiobacillus 142 119977 4 1 0 genus 5665 1 33059 Acidithiobacillus caldus 1338 species 0 920 1 Acidithiobacillus ferrooxidans 2288 0 species Acidithiobacillus ferrivorans 160808 1 0 species 1897 1 1930617 phylum 0 2800 1 1962850 class 0 2800 1 1962852 order 0 2800 1962854 1 2800 0 family 187144 1 2800 0 genus 0 species 2800 Caldithrix abyssi 187145 1 53 203691 phylum 0 106156 53 203692 Spirochaetia 3 106156 class 0 1 40 136 Spirochaetales 5 100889 order 0 1 15 1643685 88870 family 0 138 8 Borrelia 38 88833 1 0 genus 1 47466 Borrelia miyamotoi 88778 species 0 Borrelia anserina 143 1 0 species 3 1 species 0 1 40834 Borrelia duttonii 142 1 Borrelia turicatae 4 0 species species 0 4 Borrelia hermsii 1 140 species 0 3 Borrelia parkeri 1 141 2 0 species 44449 1 Borrelia recurrentis 37 genus 1 0 7 64895 22 Borreliella Borreliella valaisiana 1 62088 species 0 2 Borreliella afzelii 29518 1 0 species 1 0 species 2 Borreliella garinii 29519 1 139 1 Borreliella burgdorferi 6 0 species 3 0 species 664662 1 Borreliella bavariensis 1 1674146 Borrelia mayonii 1 species 0 1 0 family 12014 20 Spirochaetaceae 137 24 genus 0 1 872 33 Salinispira 2 1616789 0 species 839 Salinispira pacifica 1307761 1 genus 1 0 1411 Sediminispirochaeta 3 2 1911556 Sediminispirochaeta smaragdinae 1 55206 species 0 1408 3 Treponema 12 157 genus 1 0 4581 0 species 28 Treponema paraluiscuniculi 53435 1 species 0 785 Treponema primitia 1 88058 Treponema putidum 221027 1 0 species 6 1 409322 Treponema pedis 121 species 0 Treponema pallidum 1 160 species 0 28 Treponema caldarium 1 215591 species 0 1302 0 species 472 Treponema azotonutricium 150829 1 no rank 0 309 1 2638727 Treponema sp. OMZ 838 1539298 1 0 species 309 species 0 1 Treponema succinifaciens 1 167 5 species 0 1 158 Treponema denticola Treponema brennaborense 81028 1 0 species 1521 1 0 genus 3304 Spirochaeta 6 146 3 1 46355 Spirochaeta africana 1144 species 0 2154 species 0 1 154 Spirochaeta thermophila 4 399320 Sphaerochaeta 1 1826 genus 1 0 354 0 species 1131703 1 Sphaerochaeta globosa 1 1131707 Sphaerochaeta pleomorpha 1089 species 0 species 0 382 Sphaerochaeta coccoides 1 273376 1656 order 0 5 1643686 family 0 1656 5 143786 0 1 genus 1656 Brachyspira 1 29521 5 1421 species 0 1 84378 Brachyspira murdochii Brachyspira hyodysenteriae 159 1 0 species 12 species 0 14 Brachyspira intermedia 1 84377 species 0 208 Brachyspira pilosicoli 1 52584 order 0 3608 7 1643688 family 0 3608 7 170 1994 0 genus 338321 1 29510 1 Turneriella parva 1994 0 species 1614 genus 0 1 6 171 Leptospira 7 Leptospira alstonii 28452 1 0 species 87 Leptospira biflexa 1 172 species 0 477 1 174 Leptospira borgpetersenii 1017 species 0 Leptospira interrogans 1 173 species 0 12 0 species 14 Leptospira santarosai 28183 1 502679 phylum 0 19 57723 184 Acidobacteriia 17 204432 class 1 0 495751 45 Acidobacteriales 204433 12 0 1 order 414651 family 0 1 414606 1755 Acidobacteriaceae 11 204434 96216 genus 1 0 3 392733 Terriglobus 51 47620 0 species 870903 1 Terriglobus saanensis 48545 species 0 1 392734 Terriglobus roseus 2 658061 21 Candidatus Koribacter 83281 genus 0 1 1 658062 Candidatus Koribacter versatilis 83260 species 0 5 Acidobacterium 33973 2 0 1 genus 109430 109425 species 0 1 33075 Acidobacterium capsulatum Granulicella 584 940557 3 0 1 genus 123924 Granulicella tundricola 940615 1 0 species 60132 Granulicella mallensis 940614 1 0 species 63208 Solibacterales 4 332160 4 0 1 order 80916 Solibacteraceae 39 332161 3 0 1 family 80912 Candidatus Solibacter 9 332162 2 1 0 genus 80873 Candidatus Solibacter usitatus 332163 1 0 species 80864 2 1562566 1 Blastocatellia 6928 class 1 0 458032 1 0 genus 6927 species 0 6927 Chloracidobacterium thermophilum 1 458033 200918 29 4858 0 phylum class 0 4858 29 188708 0 order 62 1643947 4 62 family 0 4 1643949 1 1511648 30 genus 0 1 1006576 Defluviitoga tunisiensis 30 species 0 21 0 genus 28236 1 21 species 0 1 69499 Petrotoga mobilis 0 genus 11 160798 2 0 species 6 Marinitoga piezophila 149715 1 1 2640159 5 no rank 0 species 0 5 Marinitoga sp. 1137 1 1545835 order 0 1065 3 1643946 3 1643948 1065 family 0 2 651456 genus 0 52 651457 1 Kosmotoga olearia 26 0 species Kosmotoga pacifica 1 1330330 species 0 26 1 1184396 genus 0 1013 1 1184387 Mesotoga prima 1013 species 0 22 2419 3731 order 0 15 188709 family 0 2869 918 genus 0 4 1643951 281 0 species 38322 1 Pseudothermotoga elfii 7 species 0 1 57487 Pseudothermotoga hypogea Pseudothermotoga lettingae 1 177758 species 0 280 119394 1 Pseudothermotoga thermarum 350 0 species 6 Thermotoga 2335 11 0 1 genus 1951 1 93930 Thermotoga naphthophila 1 species 0 species 0 296 Thermotoga profunda 1 1508420 28 0 species 1508419 1 Thermotoga caldifontis 906 no rank 0 4 2631113 Thermotoga sp. RQ7 1 126738 species 0 191 species 0 192 Thermotoga sp. 2812B 1 1157948 330 0 species 126740 1 Thermotoga sp. RQ2 193 0 species 1157947 1 Thermotoga sp. Cell2 93929 1 Thermotoga petrophila 11 0 species 511 species 0 1 2336 Thermotoga maritima 192 species 0 1 2337 Thermotoga neapolitana 7 1643950 862 family 0 736 0 genus 2422 3 Fervidobacterium pennivorans 1 93466 species 0 325 4 0 species 2423 1 Fervidobacterium islandicum 407 species 0 1 2424 Fervidobacterium nodosum 4 2420 126 genus 0 2421 1 Thermosipho africanus 111 0 species 4 0 no rank 2676525 2 1 1462747 Thermosipho sp. 1063 2 species 0 Thermosipho sp. 1070 1 1437364 species 0 2 11 0 species 46541 1 Thermosipho melanesiensis 508458 7 4543 0 phylum Synergistia 2 7 649775 class 0 1 4543 0 order 4541 649776 6 649777 6 0 family 4541 1 49894 genus 0 246 246 species 0 1 97477 Acetomicrobium mobile 336260 1 0 genus 549 Thermovirga lienii 1 336261 species 0 549 2110 0 1 genus 508459 2 Cloacibacillus 1 2109 species 0 1 1197717 Cloacibacillus porcorum 81461 1 0 genus 925 1 81462 Thermanaerovibrio acidaminovorans 925 species 0 81466 1 711 0 genus 0 species 711 Aminobacterium colombiense 81468 1 22 200783 2608 phylum 0 22 187857 Aquificae 1 2608 class 1 0 0 order 1533 1485951 3 558314 3 0 family 1533 1 64159 4 genus 0 Desulfurobacterium thermolithotrophum 64160 1 0 species 4 Thermovibrio 240 2 171868 genus 1 0 1529 0 species 1289 Thermovibrio ammonificans 228745 1 18 32069 order 0 1074 0 family 24 224027 4 0 1 genus 17 4 Sulfurihydrogenibium 212790 3 1 2619248 no rank 0 8 1 436114 Sulfurihydrogenibium sp. YO3AOP1 8 species 0 1 309806 Sulfurihydrogenibium azorense 5 species 0 182899 1 0 genus 7 7 species 0 1 309805 Persephonella marina 90150 1 0 no rank 7 1 412592 genus 0 7 Thermosulfidibacter takaii 1 412593 species 0 7 0 1 family 1043 1 Aquificaceae 64898 13 338 genus 0 1 939 338 0 species 940 1 Hydrogenobacter thermophilus 12 1 0 genus 168657 6 5 Hydrogenobaculum 5 2622382 7 no rank 0 Hydrogenobaculum sp. SHO 1 547145 species 0 1 1 0 species 547144 1 Hydrogenobaculum sp. HO Hydrogenobaculum sp. Y04AAS1 380749 1 0 species 3 1 547143 Hydrogenobaculum sp. 3684 1 species 0 species 0 1 Hydrogenobaculum sp. SN 1 547146 681 genus 0 1 3 75905 Thermocrinis 4 1 136094 Thermocrinis albus 340 species 0 Thermocrinis ruber 1 75906 species 0 337 genus 1 0 11 Aquifex 1 2 2713 Aquifex aeolicus 63363 1 0 species 10 1 0 name 0