members magnitude magnitudeUnassigned count unassigned taxon rank score 1781_100346.report 19 79735005 4617 Pseudomonas pseudoalcaligenesVibrio shiloniiNocardia soliSolibacteresKlebsiella sp. 2N3Arthrobacter sp. A3Aeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasParabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 16381571526 2157 308 0 504742160 superkingdom 28890 1 0 phylum 0 Euryarchaeota 238 420912190 2290931 no rank 0 118 248267432 183963 1 0 class 69 Halobacteria 0 139875712 order 37495434 0 Haloferacales 18 1 1644055 0 no rank 3643158 0 1 2116545 0 1 3643158 no rank 2678336 756883 species 3643158 0 1 halophilic archaeon DL31 Halorubraceae 8 0 14851830 family 0 1963271 1 genus 6772775 Halorubrum 3 0 1 56688 0 29284 species 3080199 Halorubrum trapanicum 1 0 3692576 0 Halorubrum lacusprofundi 1 species 2247 0 1 1209988 3105937 0 Halopenitus 2 genus 1048396 3105937 0 Halopenitus persicus 1 species 1644057 1 0 genus 0 Salinigranum 2 4973118 4973118 1 Salinigranum rubrum 0 species 755307 0 1 1644056 19000446 Haloferacaceae 8 0 family 1 60846 0 genus 3944467 0 Halogeometricum 2 60847 species 1 Halogeometricum borinquense 0 3944467 293431 genus 0 1 3219918 species 0 1 Haloquadratum walsbyi 3219918 293091 0 1 2251 11836061 Haloferax 4 0 genus 2246 species 4012900 Haloferax volcanii 1 0 35746 0 Haloferax gibbonsii 1 3918454 species 3904707 0 1 Haloferax mediterranei species 2252 0 1 1644060 46093657 Natrialbales 22 0 order family 0 21 Natrialbaceae 46093657 1644061 1 0 1269201 1 0 genus Salinarchaeum 2 0 3255260 no rank 1 0 3255260 2621923 1333523 species 0 1 Salinarchaeum sp. Harcht-Bsk1 3255260 0 1 121871 9276578 0 Haloterrigena 3 genus 62320 species 5440782 1 Haloterrigena turkmenica 0 species Haloterrigena daqingensis 1 0 3835796 588898 genus 0 2 Natronobacterium 3788356 2256 1 0 3788356 1 Natronobacterium gregoryi 0 species 44930 genus 4314118 0 2 Natronococcus 1 29287 0 29288 Natronococcus occultus 1 0 4314118 species genus 4381543 0 Halobiforma 2 1 203193 0 229731 1 Halobiforma lacisalsi 0 4381543 species genus 4131176 Halostagnicola 2 0 1 353799 0 species 0 1 Halostagnicola larsenii 4131176 353800 genus 0 Halopiger 2 4355268 387342 1 0 4355268 0 1 Halopiger xanaduensis species 387343 0 1 63742 4443643 Natrialba 2 0 genus 4443643 Natrialba magadii 1 0 species 13769 8147715 0 3 Natrinema genus 0 1 88723 2622230 no rank 1 0 3793615 406552 species 3793615 0 Natrinema sp. J7-2 1 0 Natrinema pellirubrum 1 4354100 species 69525 0 Halobacteriales 28 56286621 order 0 2235 1 family 21132915 0 11 Halobacteriaceae 1 2236 0 2239 1 0 genus 0 Halobacterium 4 8912798 3130345 1 Halobacterium hubeiense 0 species 1407499 2242 2619893 Halobacterium salinarum 1 0 species no rank 3162560 1 0 2668073 751944 species 0 Halobacterium sp. DL1 1 3162560 0 Halanaeroarchaeum 2 4463238 genus 0 1656823 1 0 Halanaeroarchaeum sulfurireducens 1 4463238 species 1604004 genus 3698650 0 2 Halalkalicoccus 1 332246 0 3698650 Halalkalicoccus jeotgali 1 0 species 413810 Halodesulfurarchaeum 2 0 4058229 genus 0 1980514 1 species 1 Halodesulfurarchaeum formicicum 0 4058229 1873524 35153706 0 16 Haloarculaceae family 0 1 1963268 16117144 0 5 Haloarcula genus 0 1 2237 2624677 1 0 4225046 no rank 1 Haloarcula sp. CBA1115 0 4225046 species 1592728 0 1 Haloarcula taiwanensis 3721706 species 1932004 2238 1 Haloarcula marismortui 0 4274642 species 3895750 Haloarcula hispanica 1 0 species 51589 0 1073987 1 0 2 Halorientalis 3778989 genus no rank 3778989 0 1 2648975 Halorientalis sp. IM1011 1 0 3778989 species 1932360 Natronomonas 3 0 5662269 genus 0 63743 1 2257 Natronomonas pharaonis 1 0 2749696 species 416273 species 2912573 Natronomonas moolapensis 1 0 0 203135 1 Halomicrobium 2 0 3332349 genus Halomicrobium mukohataei 1 0 3332349 species 57705 146825 1 0 genus 0 3 Halorhabdus 6262955 430914 3146160 0 Halorhabdus tiamatea 1 species 146826 species 1 Halorhabdus utahensis 0 3116795 class Methanomicrobia 49 0 108391720 224756 1 0 0 1 570264 5558354 Methanocellales 5 0 order 1 570265 0 family 5558354 4 Methanocellaceae 0 genus 5558354 Methanocella 3 0 1 570266 0 1175445 species Methanocella arvoryzae 1 0 3179916 Methanocella conradii 1 0 2378438 species 1175444 0 1 94695 78345777 Methanosarcinales 28 0 order family 5597679 Methanosaetaceae 4 0 1 143067 0 genus 0 Methanothrix 3 5597679 2222 1 0 species 0 1 Methanosaeta harundinacea 2571034 301375 2223 species 3026645 Methanothrix soehngenii 1 0 0 1 2206 72748098 23 Methanosarcinaceae 0 family genus 53411589 Methanosarcina 13 0 1 2207 0 0 Methanosarcina lacustris 1 4139808 species 170861 418008 0 Methanosarcina horonobensis 1 5018607 species species 4563885 0 1 Methanosarcina vacuolata 2215 2209 species Methanosarcina mazei 1 0 4120463 0 1 Methanosarcina thermophila 3127379 species 2210 0 4 16816391 no rank 2644672 species 4211468 Methanosarcina sp. MTP4 1 0 1434100 Methanosarcina sp. Kolksee 1 0 4553495 species 1434099 1434103 species 0 Methanosarcina sp. WWM596 1 4137337 species Methanosarcina sp. WH1 1 0 3914091 1434102 38027 species 5222724 Methanosarcina siciliae 1 0 2214 5751492 1 Methanosarcina acetivorans 0 species 0 1 Methanosarcina barkeri 4650840 species 2208 2406232 1 0 genus 2321 2322 0 Methanohalobium evestigatum 1 2406232 species genus 4969668 0 Methanococcoides 3 1 2225 0 species 1 Methanococcoides burtonii 0 2575032 29291 species Methanococcoides methylutens 1 0 2394636 2226 2175 2 0 4035383 genus 2177 2022959 Methanohalophilus halophilus 1 0 species 2176 2012424 Methanohalophilus mahii 1 0 species 2138444 1 0 genus 196136 39669 species 2138444 0 1 Methanosalsum zhilinae 3072769 1 0 genus 2220 species 3072769 0 1 Methanolobus psychrophilus 420950 101191 genus 2714013 0 1 2714013 0 1 Methanomethylovorans hollandica species 101192 order 24487589 0 Methanomicrobiales 15 1 2191 0 1 0 3544738 family 196137 0 1 3544738 genus 2202 species 3544738 0 1 Methanospirillum hungatei 2203 88404 family 0 1 1804962 genus 1 0 1804962 2192 species 1804962 0 1 Methanocorpusculum labreanum 83984 8286718 Methanoregulaceae 5 0 family 0 1 1198451 475087 0 1 2922917 genus 475088 species 0 Methanosphaerula palustris 1 2922917 395331 1 0 genus Methanoregula 3 0 5363801 species 1 Methanoregula boonei 0 2542943 358766 882104 0 1 Methanoregula formicica 2820858 species 0 Methanomicrobiaceae 7 10851171 family 0 2194 1 45989 1 0 genus Methanoculleus 4 0 8007881 0 1 2859299 no rank 2619537 0 1 Methanoculleus sp. MAB1 2859299 species 86622 species 2670481 Methanoculleus bourgensis 1 0 83986 2198 species 2478101 1 Methanoculleus marisnigri 0 230355 1 0 genus 2 Methanolacinia 0 2843290 species 2843290 Methanolacinia petrolearia 1 0 54120 71373508 0 Thermococci 41 class 0 1 183968 2258 1 0 order Thermococcales 40 0 71373508 2259 1 0 family 39 Thermococcaceae 0 71373508 0 Thermococcus 29 56805881 genus 0 2263 1 72803 species 2029167 0 Thermococcus siculi 1 species 1845800 0 1 Thermococcus sibiricus 172049 2215172 0 Thermococcus litoralis 1 species 2265 187878 2045438 1 Thermococcus gammatolerans 0 species species 1957742 1 Thermococcus paralvinellae 0 582419 1 Thermococcus chitonophagus 0 3931627 species 54262 53952 species 1896106 0 Thermococcus peptonophilus 1 55802 2226382 0 1 Thermococcus barophilus species 49899 2043143 0 1 Thermococcus profundus species 1847607 1 Thermococcus onnurineus 0 species 342948 277988 0 Thermococcus thioreducens 1 2065932 species 1868990 Thermococcus radiotolerans 1 0 species 187880 163003 1950313 0 1 Thermococcus cleftensis species 0 Thermococcus piezophilus 1 1928800 species 1712654 54077 species 0 Thermococcus barossii 1 1922421 311400 2088737 0 Thermococcus kodakarensis 1 species 0 1 Thermococcus nautili 1976356 species 195522 110164 species 0 1 Thermococcus guaymasensis 1920914 2627626 6 0 11592456 no rank 0 1 Thermococcus sp. AM4 2086428 species 246969 2016361 Thermococcus sp. EXT12c 1 0 2155760 species species 1854909 1 Thermococcus sp. 5-4 0 2008440 1522818 Thermococcus sp. P6 1 0 species 122420 1042877 species 1 Thermococcus sp. 4557 0 2011320 1674923 1961221 1 Thermococcus sp. 2319x1 0 species species 1 Thermococcus gorgonarius 0 1674122 71997 71998 0 Thermococcus pacificus 1 1785673 species species 2126164 Thermococcus eurythermalis 1 0 1505907 2264 1866819 0 1 Thermococcus celer species 83867 1859370 0 1 genus 971279 species Palaeococcus pacificus 1 0 1859370 0 2260 1 0 Pyrococcus 8 12708257 genus 1008460 1716818 0 Pyrococcus yayanosii 1 species Pyrococcus kukulkanii 1 0 1977126 species 1609559 29292 species 1768562 0 Pyrococcus abyssi 1 2629106 0 2 3598205 no rank 342949 1861320 0 Pyrococcus sp. NA2 1 species species 1 Pyrococcus sp. ST04 0 1736885 1183377 1 Pyrococcus horikoshii 0 1738505 species 53953 1909041 1 Pyrococcus furiosus 0 species 2261 65907790 0 42 no rank 2283794 class 0 18 20213502 183939 0 1 2182 20213502 18 Methanococcales 0 order family Methanococcaceae 7 0 8641504 2183 1 0 genus 6964049 5 Methanococcus 0 1 2184 0 42879 species 1569500 0 Methanococcus aeolicus 1 0 Methanococcus maripaludis 1 1738114 species 39152 2188 species 1936387 0 1 Methanococcus voltae 2187 species 1 Methanococcus vannielii 0 1720048 155862 0 1 1677455 genus 155863 species 0 Methanothermococcus okinawensis 1 1677455 0 196117 1 Methanocaldococcaceae 10 0 11571998 family 196119 1 0 genus 0 Methanotorris 2 1854197 0 Methanotorris igneus 1 1854197 species 2189 0 196118 1 7 Methanocaldococcus 0 9717801 genus 67760 0 1 Methanocaldococcus infernus 1328194 species species 0 1 Methanocaldococcus fervens 1507251 83171 Methanocaldococcus jannaschii 1 0 1739927 species 2190 no rank 0 1 1773136 2641196 species 1773136 1 Methanocaldococcus sp. FS406-22 0 644281 73913 species 1761737 1 Methanocaldococcus vulcanius 0 species 1607556 0 Methanocaldococcus bathoardescens 1 1301915 class 24 0 45694288 183925 2158 24 0 45694288 order 2159 1 0 family 23 Methanobacteriaceae 0 44450946 0 5 Methanothermobacter 6808421 genus 0 145260 1 145262 species 1 Methanothermobacter thermautotrophicus 0 1751377 0 1 Methanothermobacter marburgensis 1639135 species 145263 145261 species 1686891 1 Methanothermobacter wolfeii 0 no rank 0 1 1731018 2631116 0 1 Methanothermobacter sp. CaT2 1731018 species 866790 1 2160 0 genus 22092352 8 Methanobacterium 0 59277 2515817 Methanobacterium subterraneum 1 0 species 0 Methanobacterium formicicum 1 7422571 species 2162 2627676 no rank 2 0 4554095 1379702 1 Methanobacterium sp. MB1 0 2029766 species 2524329 Methanobacterium sp. MZ-A1 1 0 species 1911685 2546541 0 Methanobacterium paludis 1 species 868131 2583753 Methanobacterium lacus 1 0 species 877455 118062 0 Methanobacterium congolense 1 2469575 species genus 0 7 Methanobrevibacter 13782770 2172 1 0 4271485 0 2 no rank 2638681 species 0 Methanobrevibacter sp. YE315 1 2273296 1609968 224719 0 1 Methanobrevibacter sp. AbM4 1998189 species Methanobrevibacter olleyae 1 0 2201192 species 294671 2173 0 Methanobrevibacter smithii 1 1829352 species 0 Methanobrevibacter millerae 1 2543538 species 230361 species 2937203 1 Methanobrevibacter ruminantium 0 83816 1 2316 0 genus 1767403 Methanosphaera 2 0 2317 Methanosphaera stadtmanae 1 0 1767403 species 2178 family 1243342 1 0 2179 1243342 1 0 genus 2180 species Methanothermus fervidus 1 0 1243342 2283796 no rank 21746646 0 23 no rank 2923868 0 3 1803510 379546 1 0 genus 3 Aciduliprofundum 0 2923868 species 1486778 Aciduliprofundum boonei 1 0 379547 no rank 0 1 1437090 2633939 1437090 Aciduliprofundum sp. MAR08-339 1 0 species 673860 class 18822778 Thermoplasmata 20 0 1 183967 0 order 5087115 6 Methanomassiliicoccales 0 1 1235850 0 2517203 family 0 2 1666795 0 1 1291539 1666795 Candidatus Methanomethylophilus 2 0 genus 1291540 species 1666795 0 Candidatus Methanomethylophilus alvus 1 0 1577788 1 0 3 Methanomassiliicoccaceae 3420320 family 1488669 1 0 genus 1607807 1488669 1 Candidatus Methanoplasma termitum 0 species 1577791 1931651 1 0 genus 1080709 0 1 Candidatus Methanomassiliicoccus intestinalis 1931651 species 1406512 no rank 0 1 1937883 1234666 1 methanogenic archaeon ISO4-H5 0 1937883 species 1495144 order 0 12 Thermoplasmatales 11797780 2301 1 0 90142 family 3762154 0 3 genus 0 3 Ferroplasma 3762154 74968 1 0 0 Ferroplasma acidiphilum 1 1826943 species 74969 1 Ferroplasma acidarmanus 0 1935211 species 97393 family 0 3 3149710 46659 1 2302 0 genus 3149710 0 Thermoplasma 3 2303 species 1564906 0 1 Thermoplasma acidophilum 50339 1584804 Thermoplasma volcanium 1 0 species 74967 no rank 1461105 0 1 1919231 1461105 0 1 no rank 1054217 1 Thermoplasmatales archaeon BRNA1 0 1461105 species family 0 Picrophilaceae 3 1545895 46630 1 0 1 46631 0 genus 1545895 0 2 Picrophilus 82076 species 0 1 Picrophilus torridus 1545895 1747776 1878916 0 1 family 1747777 genus 0 1 1878916 species 1878916 0 Cuniculiplasma divulgatum 1 1673428 0 Archaeoglobi 13 13616814 class 0 183980 1 1 2231 0 order 13616814 Archaeoglobales 12 0 0 2232 1 11 Archaeoglobaceae 0 13616814 family 54260 1 0 genus 0 Ferroglobus 2 2196266 species 2196266 0 1 Ferroglobus placidus 54261 5 Archaeoglobus 0 7789640 genus 0 2233 1 84156 0 Archaeoglobus profundus 1 1563423 species species 2247343 0 1 Archaeoglobus fulgidus 2234 1901943 0 Archaeoglobus veneficus 1 species 58290 1316941 2076931 1 Archaeoglobus sulfaticallidus 0 species genus 0 Geoglobus 3 3630908 190818 1 0 1860815 1 Geoglobus acetivorans 0 species 565033 1770093 1 Geoglobus ahangari 0 species 113653 0 1 952257 no rank 1783276 phylum 952257 1 0 1801631 1 0 952257 genus 2490204 952257 0 Candidatus Micrarchaeota archaeon Mia14 1 species 1920749 no rank 69 0 82877713 1783275 28889 phylum 0 50 67738062 0 1 183924 67738062 Thermoprotei 50 0 class 0 10 28670718 order 2281 family 28670718 10 0 118883 0 1 2284 9797655 0 4 Sulfolobus genus 43080 species 2654591 0 Sulfolobus islandicus 1 2641160 no rank 0 1 2688317 1891280 2688317 0 1 Sulfolobus sp. A20 species species 4454747 1 Sulfolobus acidocaldarius 0 2285 genus 0 2 8414936 41980 43687 species Metallosphaera sedula 1 0 6574588 1840348 0 Metallosphaera cuprina 1 species 1006005 0 1 12914 2137654 0 Acidianus 2 genus 2137654 Acidianus hospitalis 1 0 species 563177 69655 genus 1 0 2694756 111955 0 1 Sulfolobus tokodaii 2694756 species 2100760 genus 1 0 5625717 Sulfolobus solfataricus 1 0 5625717 species 2287 0 114380 1 0 Desulfurococcales 19 16739521 order 2307 5534266 0 5 family 0 1 54247 1667163 0 2 Hyperthermus genus 54248 species 1667163 1 Hyperthermus butylicus 0 54251 genus 0 1 1843267 1843267 Pyrolobus fumarii 1 0 species 54252 genus 2023836 0 Pyrodictium 2 1 2308 0 1 Pyrodictium delaneyi 0 2023836 species 1273541 family 11205255 0 Desulfurococcaceae 13 1 2272 0 3150832 Staphylothermus 3 0 genus 0 1 2279 2280 0 Staphylothermus marinus 1 1570485 species 1580347 0 Staphylothermus hellenicus 1 species 84599 genus 0 1 1356318 477695 1 Thermogladius calderae 0 1356318 species 1200300 genus Desulfurococcus 3 0 2689308 2273 1 0 Desulfurococcus amylolyticus 1 0 1374669 species 94694 2275 species 1314639 Desulfurococcus mucosus 1 0 0 3 Ignicoccus 2692202 genus 0 54258 1 54259 species 0 1 Ignicoccus islandicus 1394664 160233 1297538 0 Ignicoccus hospitalis 1 species 0 1 54253 1316595 0 Thermosphaera 2 genus 54254 species Thermosphaera aggregans 1 0 1316595 2266 1 0 order 14 Thermoproteales 0 19284524 12354694 Thermoproteaceae 8 0 family 0 1 2267 2270 0 2 3777605 genus Thermoproteus uzoniensis 1 0 1936063 species 184117 2271 1841542 0 Thermoproteus tenax 1 species 0 164450 1 Vulcanisaeta 3 0 4673120 genus 164451 2374137 0 1 Vulcanisaeta distributa species species 1 Vulcanisaeta moutnovskia 0 2298983 985052 genus 2077567 1 0 76886 76887 0 1 Caldivirga maquilingensis 2077567 species genus 0 1 1826402 2276 2277 Pyrobaculum islandicum 1 0 1826402 species 114378 6929830 5 0 family 1 2268 0 genus 6929830 Thermofilum 5 0 species 0 1 Thermofilum pendens 1813393 2269 1365176 species 1750259 0 Thermofilum adornatus 1 species 0 Thermofilum carboxyditrophus 1 1754190 1483572 1550241 species 1611988 Thermofilum uzonense 1 0 3043299 Acidilobales 6 0 order 0 1 871006 0 1 871007 1496453 0 3 Acidilobaceae family 0 Acidilobus 2 1496453 genus 0 105850 1 1496453 Acidilobus saccharovorans 1 0 species 242703 255472 2 0 1546846 family genus Caldisphaera 2 0 1546846 200414 1 0 species 0 1 Caldisphaera lagunensis 1546846 200415 651137 phylum 0 17 13548894 order 7 Nitrosopumilales 0 4854071 31932 1 0 338190 1 0 family 0 6 Nitrosopumilaceae 4854071 0 Nitrosopumilus 3 3493995 genus 0 338191 1 species 1 Candidatus Nitrosopumilus sediminis 0 1690905 1229909 species Candidatus Nitrosopumilus adriaticus 1 0 1803090 1580092 0 Candidatus Nitrosomarinus 2 1360076 genus 0 1993653 1 species 0 1 Candidatus Nitrosomarinus catalina 1360076 1898749 0 1643678 1 Nitrososphaeria 5 0 4145332 class 2527938 0 2 order 1033996 1033997 2527938 0 2 family 0 497726 1 Nitrososphaera 2 0 2527938 genus 0 Nitrososphaera viennensis 1 2527938 species 1034015 1968909 order 1617394 2 0 family 1617394 2 0 1968910 1 498374 0 genus 1617394 Candidatus Nitrosocaldus 2 0 2045011 species Candidatus Nitrosocaldus islandicus 1 0 1617394 651142 5 0 4549491 no rank 1232128 Candidatus Nitrosopelagicus 2 0 genus 0 1 1593364 0 Candidatus Nitrosopelagicus brevis 1 1232128 species 1410606 Candidatus Nitrosotenuis 3 0 3317363 genus 0 1825023 1 0 Candidatus Nitrosotenuis cloacae 1 1620156 species 1603555 species 1697207 0 Candidatus Nitrosotenuis sp. AQ6f 1 1846278 51967 phylum 1590757 0 2 0 Candidatus Korarchaeum 2 1590757 genus 0 498845 1 498846 1590757 0 1 Candidatus Korarchaeum cryptofilum species 0 1 name 0 0 1 2 15797094361 4289 Bacteria 0 superkingdom 3273829 3 0 no rank 2323 1783234 no rank 3 0 3273829 1118422 1 0 no rank 95901 2497643 class 1118422 0 1 2497644 1118422 1 0 order 2497645 family 1118422 1 0 0 1 1118422 genus 1551504 species 1118422 Candidatus Babela massiliensis 1 0 673862 phylum 2155407 0 2 95818 1476577 species 0 Candidatus Saccharibacteria oral taxon TM7x 1 705138 no rank 1450269 0 1 1895827 1450269 0 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 1 species 2056494 0 55 114811799 phylum 203691 class 114811799 Spirochaetia 55 0 1 203692 0 1643688 order 26186968 0 9 170 1 0 family 9 Leptospiraceae 0 26186968 0 Turneriella 2 4409302 genus 0 338321 1 1 Turneriella parva 0 4409302 species 29510 genus 6 Leptospira 0 21777666 171 1 0 species 3983611 0 1 Leptospira santarosai 28183 species Leptospira biflexa 1 0 3953768 172 species 3948532 0 1 Leptospira borgpetersenii 174 0 1 Leptospira interrogans 5299867 species 173 28452 4591888 0 Leptospira alstonii 1 species 1643686 5 0 12234119 order 5 0 12234119 family 143786 1 29521 0 genus 12234119 0 5 Brachyspira Brachyspira murdochii 1 0 3241804 species 84378 1 Brachyspira intermedia 0 3308048 species 84377 Brachyspira hyodysenteriae 1 0 3048442 species 159 Brachyspira pilosicoli 1 0 2635825 species 52584 order 0 40 Spirochaetales 76390712 136 1 0 1643685 16 0 22395410 family genus 0 Borreliella 8 10135230 64895 1 0 139 1998154 0 1 Borreliella burgdorferi species 64897 species 1 Borreliella bissettii 0 1403443 species 1151622 0 Borreliella afzelii 1 29518 29519 species Borreliella garinii 1 0 988799 1674146 Borrelia mayonii 1 0 2613603 species 664662 986914 Borreliella bavariensis 1 0 species 62088 992695 0 1 Borreliella valaisiana species 0 138 1 Borrelia 8 0 12260180 genus species 0 Borrelia miyamotoi 1 5048254 47466 species 1242163 0 1 Borrelia recurrentis 44449 141 1030684 0 Borrelia parkeri 1 species 142 species 1165365 Borrelia turicatae 1 0 0 Borrelia anserina 1 1042690 species 143 40834 species 1574881 Borrelia duttonii 1 0 140 1156143 1 Borrelia hermsii 0 species 0 137 1 23 Spirochaetaceae 0 53995302 family Treponema 12 0 30621631 genus 0 157 1 Treponema pallidum 1 0 1139203 species 160 2800562 0 1 Treponema putidum species 221027 species 3055580 0 1 Treponema brennaborense 81028 species 1133390 0 Treponema paraluiscuniculi 1 53435 Treponema denticola 1 0 2843201 species 158 88058 4059867 0 1 Treponema primitia species 167 species Treponema succinifaciens 1 0 2897425 2708067 0 1 no rank 2638727 species 2708067 Treponema sp. OMZ 838 1 0 1539298 species Treponema azotonutricium 1 0 3855671 150829 2889325 1 Treponema pedis 0 species 409322 215591 species 3239340 Treponema caldarium 1 0 399320 1 0 genus Sphaerochaeta 4 0 9134615 species 3316466 0 1 Sphaerochaeta globosa 1131703 1 Sphaerochaeta coccoides 0 2227296 species 273376 1131707 species 0 1 Sphaerochaeta pleomorpha 3590853 1616789 0 1 3782798 genus 1307761 0 1 Salinispira pacifica 3782798 species genus 4653970 2 Sediminispirochaeta 0 1 1911556 0 55206 0 1 Sediminispirochaeta smaragdinae 4653970 species 5802288 0 Spirochaeta 3 genus 0 1 146 46355 0 1 Spirochaeta africana 3285855 species 154 0 1 Spirochaeta thermophila 2516433 species 4 0 1558103 no rank 2498710 phylum 1558103 4 0 67814 1 693071 0 class 1558103 0 4 Caldisericia 693072 1 0 order Caldisericales 3 0 1558103 1558103 2 0 family 693073 2 Caldisericum 0 1558103 genus 0 693074 1 species 1558103 Caldisericum exile 1 0 693075 0 74152 1 9 Elusimicrobia 0 5511951 phylum 99260 0 1 1148570 no rank uncultured Termite group 1 bacterium 1 0 1148570 species 167965 2719819 0 5 Endomicrobia class 0 1 447830 0 4 2719819 order 1783344 family 2719819 Endomicrobiaceae 4 0 1 1783343 0 1408194 1 0 genus Endomicrobium 3 0 2719819 0 Candidatus Endomicrobium trichonymphae 1 1130840 species 1408204 1 Endomicrobium proavitum 0 1588979 species 1408281 641853 class 0 2 1643562 Elusimicrobiales 2 0 1643562 order 0 641854 1 1643562 0 1 family 641876 423604 genus 1643562 1 0 423605 Elusimicrobium minutum 1 0 1643562 species 1783270 0 324 1038402339 no rank 16832731 0 8 phylum 142182 0 Gemmatimonadetes 8 16832731 class 0 219685 1 order 0 Gemmatimonadales 7 16832731 219686 1 0 0 219687 1 Gemmatimonadaceae 6 0 16832731 family 7479215 0 Gemmatirosa 2 genus 0 1 1706036 861299 species 1 Gemmatirosa kalamazoonesis 0 7479215 0 3 Gemmatimonas 9353516 genus 0 173479 1 species 0 1 Gemmatimonas phototrophica 4716552 1379270 1 Gemmatimonas aurantiaca 0 4636964 species 173480 68336 0 311 1011637149 no rank 968659712 0 Bacteroidetes 284 phylum 0 1 976 768503 1 0 class Cytophagia 53 0 183532740 0 768507 1 0 Cytophagales 52 183532740 order 0 Amoebophilaceae 4 2829294 family 0 1501348 1 1 0 1884364 genus 281119 0 Candidatus Amoebophilus asiaticus 1 1884364 species 281120 0 1 273135 944930 Candidatus Cardinium 2 0 genus 944930 Cardinium endosymbiont of Encarsia pergandiella 1 0 species 249402 1937968 family 4919337 1 0 1937972 1 0 4919337 genus 999 4919337 1 Bernardetia litoralis 0 species 8251744 Persicobacteraceae 3 0 family 0 1 1853234 Persicobacter 2 0 8251744 genus 0 59740 1 8251744 0 1 no rank 2664020 1085624 species 8251744 1 Persicobacter sp. JZB09 0 family 58757006 Hymenobacteraceae 16 0 1 1853232 0 1 89966 0 genus 34086912 0 Hymenobacter 8 no rank 0 5 23965990 2615202 Hymenobacter sp. DG25B 1 0 4360029 species 1385664 1484118 5366977 0 1 Hymenobacter sp. PAMC 26628 species 1356852 Hymenobacter sp. APR13 1 0 5010594 species species 5451254 0 Hymenobacter sp. PAMC 26554 1 1484116 species 3777136 0 1 Hymenobacter sp. DG25A 1385663 species 4868852 0 Hymenobacter sedentarius 1 1411621 1446467 0 1 Hymenobacter swuensis 5252070 species 1 1379908 0 genus 14377998 Rufibacter 4 0 0 1 Rufibacter tibetensis 5413467 species 512763 no rank 0 2 8964531 2639626 1379910 species 0 Rufibacter sp. DG31D 1 4820793 1379909 species 0 Rufibacter sp. DG15C 1 4143738 323449 1 0 genus 0 Pontibacter 3 10292096 species 4829559 0 1 Pontibacter akesuensis 388950 400092 species 1 Pontibacter korlensis 0 5462537 0 1 89373 64198291 Cytophagaceae 15 0 family 2 Cytophaga 0 4433218 genus 0 978 1 985 0 1 Cytophaga hutchinsonii 4433218 species 0 1 120831 6967790 2 Dyadobacter 0 genus 94254 species 1 Dyadobacter fermentans 0 6967790 105 genus 6919729 1 0 106 species 6919729 0 1 Runella slithyformis 0 1 4059653 genus 319458 species 1 Leadbetterella byssophila 0 4059653 316068 0 1 107 35409866 0 6 Spirosoma genus species 5828404 0 Spirosoma rigui 1 564064 1178516 species 0 1 Spirosoma montaniterrae 5797678 1211326 species 0 1 Spirosoma aerolatum 7959595 1379870 7029352 0 1 Spirosoma radiotolerans species 2057025 8794837 0 Spirosoma sp. HA7 1 species 6408035 0 2 Fibrella genus 0 1 861914 0 1 6408035 no rank 2620963 species 6408035 Fibrella sp. ES10-3-2-2 1 0 1834519 200667 1 0 family 0 Flammeovirgaceae 5 18509721 0 59739 1 0 Flammeovirga 2 7327614 genus no rank 1 0 7327614 2637820 7327614 1 Flammeovirga sp. MY04 0 species 1191459 no rank 0 1 6665617 340671 species Flammeovirgaceae bacterium 311 1 0 6665617 1257021 869806 4516490 0 1 genus 4516490 0 Marivirga tractuosa 1 species 1006 563798 26067347 0 7 family 1 390846 0 genus 5608040 2 Echinicola 0 390884 species 5608040 0 Echinicola vietnamensis 1 246875 genus 3882610 1 0 1727163 3882610 0 Algoriphagus sp. M8-2 1 species 1 68288 0 genus 12380102 0 Cyclobacterium 3 6221273 0 1 Cyclobacterium marinum species 104 species 6158829 0 Cyclobacterium amurskyense 1 320787 4196595 0 1 genus 232244 232259 4196595 Belliella baltica 1 0 species order Bacteroidetes Order II. Incertae sedis 7 0 11723774 1100069 1 0 11723774 6 Rhodothermaceae 0 family 0 1 563843 3360429 0 2 Rhodothermus genus 0 1 29548 Rhodothermus marinus 1 0 3360429 species 29549 146918 1 0 genus 0 Salinibacter 2 3710123 species 0 1 Salinibacter ruber 3710123 146919 1196022 no rank 1 0 4653222 0 Rhodothermaceae bacterium RA 1 4653222 species 1779382 class 0 61 Bacteroidia 181878097 200643 1 0 1970189 20439025 0 8 order 558415 1 0 family 0 2 Marinilabiliaceae 4775573 genus 4775573 0 1 1193324 species 0 Alkalitalea saponilacus 1 4775573 889453 family 5132075 Prolixibacteraceae 2 0 1 1471398 0 1471399 genus 1 0 5132075 1168034 species 0 1 Draconibacterium orientale 5132075 1970190 2 0 4812386 family 0 1 1970191 4812386 0 Salinivirga 2 genus 1307839 1 Salinivirga cyanobacteriivorans 0 4812386 species 1573805 1 0 family Marinifilaceae 2 0 5718991 2060722 genus 0 1 5718991 1717717 species 0 1 Marinifilaceae bacterium SPP2 5718991 order 161439072 0 52 Bacteroidales 1 171549 0 0 1 2005519 3076856 0 Barnesiellaceae 3 family 1 397864 0 genus 3076856 Barnesiella 2 0 species 1 Barnesiella viscericola 0 3076856 397865 3685504 1 0 family 2005523 genus 0 1 3685504 346096 185300 species 3685504 0 Paludibacter propionicigenes 1 family 64265548 0 14 Bacteroidaceae 1 815 0 genus 64265548 13 Bacteroides 0 1 816 0 28119 species 3361794 0 1 Bacteroides zoogleoformans 0 1 Bacteroides heparinolyticus 3608975 species 28113 47678 4570803 0 Bacteroides caccae 1 species 6473892 0 1 Bacteroides ovatus species 28116 290053 3998906 0 1 Bacteroides helcogenes species 1796613 4839927 0 Bacteroides caecimuris 1 species 7084828 0 Bacteroides cellulosilyticus 1 species 246787 821 species 0 1 Bacteroides vulgatus 5163189 9153664 0 Bacteroides fragilis 1 species 817 species 4308663 Bacteroides salanitronis 1 0 376805 Bacteroides dorei 1 0 5310365 species 357276 6390542 0 1 Bacteroides thetaiotaomicron species 818 Rikenellaceae 4 0 6883466 family 0 171550 1 genus 3149227 1 0 1611681 0 Mucinivorans hirudinis 1 3149227 species 1433126 1 239759 0 genus 3734239 0 Alistipes 2 species 0 Alistipes finegoldii 1 3734239 214856 no rank 0 2 3778159 333046 no rank 0 1 2657245 185291 species 2657245 0 Bacteroidales bacterium CF 1 1400053 511434 genus 1 0 1120914 511435 species 1120914 0 Candidatus Azobacteroides pseudotrichonymphae 1 family Tannerellaceae 7 0 16540730 2005525 1 0 10184045 0 Parabacteroides 3 genus 0 1 375288 2649774 0 1 5372666 no rank 5372666 1 Parabacteroides sp. CT06 0 species 2025876 823 species 4811379 0 1 Parabacteroides distasonis 0 Tannerella 3 6356685 genus 0 195950 1 1 0 2973531 no rank 2620507 712710 0 Tannerella sp. oral taxon HOT-286 1 2973531 species 28112 species 3383154 0 1 Tannerella forsythia Dysgonamonadaceae 2 0 4414963 family 0 2005520 1 294702 genus 1 0 4414963 species 4414963 0 1 Proteiniphilum saccharofermentans 1642647 family 16661600 0 6 Porphyromonadaceae 1 171551 0 genus 3717632 1 0 307628 0 Petrimonas mucosa 1 3717632 species 1642646 Porphyromonas 3 0 10135042 genus 0 836 1 1 Porphyromonas asaccharolytica 0 2186370 species 28123 0 1 Porphyromonas gingivalis 7948672 species 837 1784836 1 0 2808926 genus 1562970 species 1 Fermentimonas caenicola 0 2808926 1 171552 0 family 37740014 11 Prevotellaceae 0 Prevotella 10 0 37740014 genus 0 838 1 28132 species 1 Prevotella melaninogenica 0 3168196 species 2937589 Prevotella denticola 1 0 28129 589436 species 1 Prevotella fusca 0 3261806 0 1 Prevotella intermedia 12147951 species 28131 species 1 Prevotella ruminicola 0 3619559 839 52227 3350206 0 Prevotella dentalis 1 species no rank 2480269 1 0 2638335 652716 2480269 0 Prevotella sp. oral taxon 299 1 species species 3913006 0 Prevotella jejuni 1 1177574 76123 species 0 1 Prevotella enoeca 2861432 4392232 0 1 family 1853231 283168 4392232 0 1 genus 1 Odoribacter splanchnicus 0 4392232 species 28118 51013797 10 0 class 1853228 1853229 1 0 order 0 10 Chitinophagales 51013797 51013797 0 9 Chitinophagaceae family 0 1 563835 379899 10325077 2 0 genus species 0 1 Niabella ginsenosidivorans 5627734 1176587 446683 species 4697343 0 Niabella soli 1 79328 genus 14407268 2 0 1 Chitinophagaceae bacterium 13 0 5279921 species 2029983 species 0 1 Chitinophaga pinensis 9127347 79329 9033684 1 0 genus 354354 species 9033684 0 1 Niastella koreensis 354356 649460 1 0 7814405 genus species 7814405 1 Filimonas lacunae 0 477680 1769012 3492500 1 0 genus 2636138 3492500 0 1 no rank 1 Arachidicoccus sp. BS20 0 3492500 species 1850526 398041 genus 5940863 1 0 1492898 Flavisolibacter tropicus 1 0 5940863 species Flavobacteriia 126 0 435945278 class 0 117743 1 order 435945278 0 125 Flavobacteriales 1 200644 0 0 49546 1 Flavobacteriaceae 108 0 419626693 family genus 15257719 3 0 104264 Cellulophaga lytica 1 0 5771544 species 979 76594 4597822 1 Cellulophaga baltica 0 species 4888353 0 1 Cellulophaga algicola species 59600 336276 1 0 4314320 genus no rank 4314320 0 1 2615019 0 1 Olleya sp. Bg11-27 4314320 species 2058135 0 Capnocytophaga 15 49767104 genus 0 1016 1 45243 species 5376983 0 1 Capnocytophaga haemolytica 1848904 0 1 Capnocytophaga stomatis 2831350 species species 9028510 1 Capnocytophaga sputigena 0 1019 species 2612925 0 1 Capnocytophaga ochracea 1018 1017 0 Capnocytophaga gingivalis 1 2838633 species species 2504023 1 Capnocytophaga leadbetteri 0 327575 28189 2640475 Capnocytophaga cynodegmi 1 0 species 2640652 0 6 16966748 no rank 1316596 species 0 Capnocytophaga sp. oral taxon 878 1 2990835 1945658 2633192 0 Capnocytophaga sp. H4358 1 species 209053 species 3412686 0 1 Capnocytophaga sp. ChDC OS43 1945657 2632967 0 Capnocytophaga sp. H2931 1 species 1316593 species 1 Capnocytophaga sp. oral taxon 864 0 2682541 species 2614527 Capnocytophaga sp. oral taxon 323 1 0 1705617 species 0 Capnocytophaga canimorsus 1 4967457 28188 1209327 5665358 0 1 genus 1803846 species 5665358 0 1 Flavivirga eckloniae genus 3569807 1 0 389486 1 0 3569807 no rank 2648869 species 3569807 1 Sediminicola sp. YIK13 0 1453352 genus 0 1 3994770 261827 1736674 0 1 Algibacter alginicilyticus 3994770 species 1 0 3520671 genus 153265 species 1 Aequorivita sublithincola 0 3520671 101385 286104 7161148 0 2 genus no rank 7161148 2 0 2615021 1936080 3349669 1 Winogradskyella sp. J14-2 0 species species 3811479 0 Winogradskyella sp. PG-2 1 754409 393005 genus 4116543 0 1 no rank 0 1 4116543 2614803 2069432 species 4116543 1 Tamlana sp. UJ94 0 4321832 0 1 genus 83612 0 Psychroflexus torquis 1 4321832 species 57029 1013 2272954 1 0 genus 1014 species 2272954 1 Weeksella virosa 0 genus 0 1 5857781 178469 616991 species 5857781 1 Arenibacter algicola 0 291183 genus 10155330 3 0 species Lacinutrix venerupis 1 0 3192399 1486034 2647285 no rank 6962931 2 0 species 0 1 Lacinutrix sp. 5H-3-7-4 3296168 983544 2057808 species 3666763 1 Lacinutrix sp. Bg11-31 0 1649495 genus 3752836 0 1 2622645 no rank 0 1 3752836 1936081 species 3752836 0 1 Seonamhaeicola sp. S2-3 252356 17179030 4 0 genus 3 0 12539073 no rank 2615042 species 4271158 0 Maribacter sp. T28 1 1836467 species 0 Maribacter sp. HTCC2170 1 3868304 313603 1644130 0 1 Maribacter sp. 1_2014MBL_MicDiv 4399611 species 1178778 4639957 1 Maribacter cobaltidurans 0 species 326319 1 0 genus 0 Dokdonia 4 9986485 0 Dokdonia donghaensis 1 3293944 species 326320 2615033 no rank 6692541 2 0 3302548 Dokdonia sp. MED134 1 0 species 313590 species 1 Dokdonia sp. 4H-3-7-5 0 3389993 983548 genus 0 4 13988316 104267 species Tenacibaculum maritimum 1 0 3435971 107401 Tenacibaculum jejuense 1 0 4614879 species 584609 1850252 species 3019213 1 Tenacibaculum todarodis 0 669041 species 2918253 0 Tenacibaculum dicentrarchi 1 237 1 0 genus Flavobacterium 9 0 36981563 96345 species 5532609 1 Flavobacterium psychrophilum 0 0 Flavobacterium johnsoniae 1 5603295 species 986 3027315 0 1 Flavobacterium crassostreae species 1763534 1492737 species 0 1 Flavobacterium gilvum 4402594 species 8008155 0 1 Flavobacterium columnare 996 1306519 species 1 Flavobacterium commune 0 3851214 55197 1 Flavobacterium branchiophilum 0 3563292 species 312277 Flavobacterium indicum 1 0 2993089 species 1 0 5521712 genus 112040 63186 species 1 Zobellia galactanivorans 0 5521712 225842 genus 2 0 4751612 2644710 4751612 2 0 no rank 1336794 0 1 Formosa sp. Hel1_33_131 2735158 species 1336795 2016454 0 Formosa sp. Hel3_A1_48 1 species 0 252306 1 Robiginitalea 2 0 3530383 genus 252307 Robiginitalea biformata 1 0 3530383 species 3160313 2 Riemerella 0 genus 0 1 34084 0 Riemerella anatipestifer 1 3160313 species 34085 0 2 6393100 genus 358023 species 2966978 0 Lutibacter profundi 1 1622118 2626258 1 0 3426122 no rank 1850246 3426122 1 Lutibacter sp. LPB0138 0 species 4086550 0 1 genus 143222 no rank 4086550 1 0 2633436 1729720 4086550 0 Salegentibacter sp. T436 1 species 308865 43596612 5 0 genus 1756149 species Elizabethkingia genomosp. 3 1 0 4433522 species Elizabethkingia genomosp. 4 1 0 4216720 1756150 172045 species 8635530 0 1 Elizabethkingia miricola 238 0 1 Elizabethkingia meningoseptica 11750998 species 14559842 1 Elizabethkingia anophelis 0 species 1117645 1204360 1 0 3303986 genus 3303986 Siansivirga zeaxanthinifaciens 1 0 species 762954 2 0 7116681 genus 111500 0 Muricauda ruestringensis 1 3842422 species 111501 0 Muricauda lutaonensis 1 3274259 species 516051 1176327 genus 3182272 1 0 no rank 1 0 3182272 2636237 2094025 0 Aureitalea sp. RR4-38 1 3182272 species 0 1 52959 17717514 6 Polaribacter 0 genus 196858 no rank 0 3 9783186 species 0 1 Polaribacter sp. MED152 2961474 313598 1529069 3254403 1 Polaribacter sp. BM10 0 species 2058137 0 Polaribacter sp. ALD11 1 3567309 species 0 1 Polaribacter reichenbachii 4125014 species 996801 1774273 species 3809314 0 Polaribacter vadi 1 50925823 9 0 genus 59732 14454397 0 3 no rank 2593645 species 4077766 1 Chryseobacterium sp. IHB B 17019 0 1721091 2015076 4872888 Chryseobacterium sp. T16E-39 1 0 species 5503743 0 Chryseobacterium sp. StRB126 1 species 878220 1685010 species Chryseobacterium glaciei 1 0 4871648 558152 species 4501946 0 Chryseobacterium piperi 1 1265445 species 1 Chryseobacterium camelliae 0 4376354 1324352 4633632 0 1 Chryseobacterium gallinarum species species 0 Chryseobacterium indologenes 1 15322966 253 536441 species 2764880 0 1 Chryseobacterium taklimakanense 76831 genus 4 0 16742756 76832 species Myroides odoratimimus 1 0 4457748 8220474 0 2 no rank 2642485 4155464 0 1 Myroides sp. A21 species 1583100 1458492 species 1 Myroides sp. ZB35 0 4065010 species Myroides profundi 1 0 4064534 480520 4 0 15165362 genus 292691 2126553 4380140 1 Gramella sp. SH35 0 species 1486245 species 4007868 0 1 Gramella flava Gramella forsetii 1 0 3798465 species 411153 species 0 Gramella sp. LPB0144 1 2978889 1913577 0 4 12819412 genus 363408 2 0 6069069 no rank 2615035 Nonlabens sp. MIC269 1 0 2884293 species 1476901 0 1 Nonlabens sp. MB-3u-79 3184776 species 2058134 2835711 1 Nonlabens sediminis 0 species 319236 328515 0 1 Nonlabens dokdonensis 3914632 species no rank 5842311 0 2 61432 3074209 0 Flavobacteriaceae bacterium UJ101 1 species 1150389 531844 species 2768102 1 Flavobacteriaceae bacterium 3519-10 0 1518147 3427057 0 1 genus 1790137 species 3427057 Wenyingzhuangia fucanilytica 1 0 2398521 1 0 genus 28250 Ornithobacterium rhinotracheale 1 0 2398521 species 28251 417127 0 1 5128187 genus 5128187 0 1 Zunongwangia profunda species 398743 genus 2952962 Croceibacter 2 0 1 216431 0 species 0 1 Croceibacter atlanticus 2952962 313588 family 4633577 2 0 1853230 genus 4633577 2 Fluviicola 0 1 332102 0 191579 0 Fluviicola taffensis 1 4633577 species 0 Cryomorphaceae 2 4000057 family 0 246874 1 1 0 4000057 genus 267986 species 4000057 1 Owenweeksia hongkongensis 0 253245 313602 752442 0 2 no rank 336809 genus 0 1 443143 336810 species 443143 0 1 Candidatus Sulcia muelleri genus 1 0 309299 1940138 1415657 309299 1 Candidatus Walczuchella monophlebidarum 0 species 5011102 8 0 family 39782 34098 0 8 5011102 genus 2647581 no rank 0 6 3769111 species Blattabacterium sp. (Blatta orientalis) 1 0 638184 367806 39768 590336 Blattabacterium sp. (Mastotermes darwiniensis) 1 0 species 1316444 species 626626 1 Blattabacterium sp. (Nauphoeta cinerea) 0 640935 0 1 Blattabacterium sp. (Blattella germanica) species 624186 367488 species 640442 0 1 Blattabacterium sp. (Periplaneta americana) Blattabacterium sp. (Blaberus giganteus) 1 0 632588 species 1186051 164514 species Blattabacterium punctulatus 1 0 609561 1653831 species 632430 0 1 Blattabacterium cuenoti family 2 0 1921407 1755828 genus 1921407 Ichthyobacterium 2 0 1 1755829 0 1921407 0 1 Ichthyobacterium seriolicida species 242600 117747 1 0 class 0 Sphingobacteriia 23 91394190 91394190 Sphingobacteriales 22 0 order 0 1 200666 91394190 Sphingobacteriaceae 21 0 family 0 1 84566 genus 4 Mucilaginibacter 0 17263258 423349 1 0 2617802 5618021 0 1 no rank Mucilaginibacter sp. PAMC 26640 1 0 5618021 species 1300914 5301339 0 1 Mucilaginibacter sp. BJC16-A31 species 1234841 species 0 1 Mucilaginibacter gotjawali 6343898 1550579 Sphingobacterium 6 0 28891330 genus 0 28453 1 2609468 no rank 24238282 0 4 2003121 species 1 Sphingobacterium sp. G1-14 0 6325678 1933220 species 6357185 1 Sphingobacterium sp. B29 0 species 1 Sphingobacterium sp. 21 0 6226409 743722 Sphingobacterium sp. ML3W 1 0 5329010 species 1538644 1 Sphingobacterium mizutaii 0 4653048 species 1010 6182066 1 0 no rank 84568 1986952 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 0 6182066 species genus 29220231 0 Pedobacter 6 1 84567 0 no rank 6147290 1 0 2628915 1727164 species 6147290 Pedobacter sp. PACM 27299 1 0 Pedobacter ginsengisoli 1 0 5373360 species 363852 430522 0 1 Pedobacter steynii 6581659 species species 0 1 Pedobacter heparinus 5167383 984 188932 species 5950539 0 Pedobacter cryoconitis 1 929509 genus 5202069 1 0 1 Solitalea canadensis 0 5202069 species 995 0 1 1649482 4635236 Pseudopedobacter 2 0 genus 151895 species 4635236 1 Pseudopedobacter saltans 0 1937959 0 3 13171836 class 1936988 0 3 13171836 order 1937961 2 0 8771651 family 0 1 2349 8771651 Haliscomenobacter 2 0 genus 2350 8771651 0 Haliscomenobacter hydrossis 1 species family 4400185 1 0 89374 1007 1 0 4400185 genus 1008 4400185 1 Saprospira grandis 0 species 6959411 0 6 phylum 1134404 0 6 Ignavibacteria 6959411 class 0 795747 1 1 795748 0 order 6959411 0 Ignavibacteriales 5 1 1334117 0 family 3300414 3 Melioribacteraceae 0 genus 2 Melioribacter 0 3300414 1134403 1 0 1134405 species 1 Melioribacter roseus 0 3300414 795749 family 3658997 0 1 3658997 1 0 genus 795750 591197 3658997 0 1 Ignavibacterium album species phylum 36018026 0 21 1090 36018026 0 Chlorobia 21 class 0 1 191410 191411 1 0 order 0 20 Chlorobiales 36018026 0 1 191412 36018026 0 Chlorobiaceae 19 family genus Prosthecochloris 5 0 9862749 1101 1 0 Prosthecochloris aestuarii 1 0 2579695 species 1102 no rank 3 0 7283054 2632826 1868325 species 2399849 Prosthecochloris sp. CIB 2401 1 0 2414726 1 Prosthecochloris sp. HL-130-GSB 0 species 1974213 species 0 Prosthecochloris sp. GSB1 1 2468479 281093 100715 genus 1 0 3293456 100716 3293456 0 Chloroherpeton thalassium 1 species genus 7241471 0 Chlorobaculum 4 1 256319 0 274537 2797276 Chlorobaculum limnaeum 1 0 species 1097 2154946 0 Chlorobaculum tepidum 1 species 274539 species 1 Chlorobaculum parvum 0 2289249 no rank 15620350 0 8 274493 0 1 1091 10237270 0 5 Chlorobium genus 1966858 0 Chlorobium phaeovibrioides 1 species 1094 1092 2763181 1 Chlorobium limicola 0 species 337090 species 2572079 Chlorobium chlorochromatii 1 0 1096 0 Chlorobium phaeobacteroides 1 2935152 species 1099 1 0 genus 3 Pelodictyon 0 5383080 species Pelodictyon luteolum 1 0 2364842 1100 Pelodictyon phaeoclathratiforme 1 0 3018238 species 34090 456828 2 0 2246820 phylum 0 Candidatus Cloacimonas 2 2246820 genus 0 456826 1 species Candidatus Cloacimonas acidaminovorans 1 0 2246820 456827 65842 phylum 7685639 0 3 204430 class 7685639 0 3 1 218872 0 order 7685639 Fibrobacterales 3 0 204431 0 2 7685639 family 0 Fibrobacter 2 7685639 genus 0 832 1 833 species Fibrobacter succinogenes 1 0 7685639 68297 phylum 5 0 3815547 0 203486 1 0 Dictyoglomia 5 3815547 class 0 4 Dictyoglomales 3815547 order 0 203487 1 family 3815547 3 0 203488 genus 3815547 0 3 Dictyoglomus 1 13 0 0 1 Dictyoglomus thermophilum 1959987 species 14 1855560 0 Dictyoglomus turgidum 1 species 513050 1424912 5 0 phylum 2138240 Coprothermobacteria 5 0 1424912 class 0 2138243 1 0 Coprothermobacterales 4 1424912 order 0 2138246 1 2138247 1 0 family Coprothermobacteraceae 3 0 1424912 1 68335 0 genus 1424912 0 2 Coprothermobacter 35786 0 1 Coprothermobacter proteolyticus 1424912 species 5 0 4978541 phylum 1930617 class 5 Calditrichae 0 4978541 1962850 1 0 Calditrichales 4 0 4978541 order 0 1962852 1 1962854 1 0 family 0 3 Calditrichaceae 4978541 4978541 0 Caldithrix 2 genus 0 1 187144 species 4978541 Caldithrix abyssi 1 0 187145 phylum 0 8 10508152 200930 Deferribacteres 8 0 10508152 class 0 68337 1 0 1 191393 10508152 7 Deferribacterales 0 order 1 191394 0 family 10508152 0 Deferribacteraceae 6 0 1 53572 2542933 2 Deferribacter 0 genus 197162 species 1 Deferribacter desulfuricans 0 2542933 2351 genus 1 0 2526590 2352 2526590 0 Flexistipes sinusarabici 1 species 117999 genus 3222077 1 0 Denitrovibrio acetiphilus 1 0 3222077 species 118000 genus 2216552 1 0 545865 477976 0 1 Calditerrivibrio nitroreducens 2216552 species 40117 25927538 0 14 phylum 0 1 203693 25927538 Nitrospira 14 0 class 0 189778 1 0 13 Nitrospirales 25927538 order family 25927538 Nitrospiraceae 12 0 1 189779 0 16286502 5 Nitrospira 0 genus 0 1 1234 species 4084817 Nitrospira japonica 1 0 1325564 42253 species 4589485 0 1 Nitrospira moscoviensis 4317083 0 1 Nitrospira defluvii species 330214 species 3295117 Candidatus Nitrospira inopinata 1 0 1715989 genus 2003803 Thermodesulfovibrio 2 0 1 28261 0 28262 species 2003803 Thermodesulfovibrio yellowstonii 1 0 1 179 0 genus 7637233 4 Leptospirillum 0 261386 2368371 0 1 species group species 1 Leptospirillum ferriphilum 0 2368371 178606 261385 2709324 0 1 species group species 2709324 0 Leptospirillum sp. Group II 'CF-1' 1 1660083 species group 2559538 1 0 655606 180 species 2559538 0 1 Leptospirillum ferrooxidans 11574599 13 0 phylum 508458 11574599 0 Synergistia 13 class 0 1 649775 0 1 649776 11574599 0 Synergistales 12 order 0 1 649777 11574599 Synergistaceae 11 0 family genus 3585187 0 Cloacibacillus 2 1 508459 0 1197717 3585187 1 Cloacibacillus porcorum 0 species 0 81466 1 Aminobacterium 2 0 1980592 genus 81468 1980592 1 Aminobacterium colombiense 0 species genus Thermanaerovibrio 2 0 1848474 81461 1 0 81462 species 1848474 Thermanaerovibrio acidaminovorans 1 0 Thermovirga 2 0 1999646 genus 0 336260 1 336261 1999646 0 Thermovirga lienii 1 species 0 49894 1 2 Acetomicrobium 0 2160700 genus 97477 Acetomicrobium mobile 1 0 2160700 species 0 1 57723 45503381 Acidobacteria 21 0 phylum 0 1562566 1 0 3 Blastocatellia 3695372 class 2 Chloracidobacterium 0 3695372 genus 0 458032 1 458033 3695372 1 Chloracidobacterium thermophilum 0 species 41808009 17 Acidobacteriia 0 class 0 1 204432 Solibacterales 4 0 9965640 order 0 332160 1 9965640 0 Solibacteraceae 3 family 0 1 332161 332162 1 0 genus Candidatus Solibacter 2 0 9965640 species Candidatus Solibacter usitatus 1 0 9965640 332163 0 1 204433 31842369 0 Acidobacteriales 12 order 1 204434 0 family 31842369 0 Acidobacteriaceae 11 genus Granulicella 3 0 11741561 940557 1 0 940614 species 6237577 0 Granulicella mallensis 1 940615 5503984 0 Granulicella tundricola 1 species genus 10323084 Terriglobus 3 0 1 392733 0 392734 species 0 Terriglobus roseus 1 5227858 870903 1 Terriglobus saanensis 0 5095226 species 5650368 Candidatus Koribacter 2 0 genus 0 1 658061 658062 species 5650368 Candidatus Koribacter versatilis 1 0 0 1 33973 4127356 Acidobacterium 2 0 genus species 1 Acidobacterium capsulatum 0 4127356 33075 200940 8 0 7535598 phylum class 7535598 0 8 67799 order Thermodesulfobacteriales 8 0 7535598 188710 1 0 family 7535598 0 Thermodesulfobacteriaceae 7 1 188711 0 444090 genus 1 0 1814952 species 1814952 1 Caldimicrobium thiodismutans 0 1653476 genus 2322224 2 Thermodesulfatator 0 1 241192 0 species 0 1 Thermodesulfatator indicus 2322224 171695 genus 3 Thermodesulfobacterium 0 3398422 1740 1 0 species 0 1 Thermodesulfobacterium geofontis 1634377 1295609 1764045 0 Thermodesulfobacterium commune 1 species 1741 200938 phylum 5 0 2928377 class 2928377 Chrysiogenetes 5 0 1 118001 0 189769 1 0 order 4 Chrysiogenales 0 2928377 1 189770 0 family 2928377 3 Chrysiogenaceae 0 genus 2928377 0 Desulfurispirillum 2 1 393029 0 936456 species 2928377 0 1 Desulfurispirillum indicum 1783272 no rank 5836582989 0 1643 1859062 no rank 3101581 0 2 0 1 262406 3101581 Thermobaculum 2 0 genus species 3101581 Thermobaculum terrenum 1 0 166501 phylum Actinobacteria 654 0 2706354694 201174 1 0 84992 1 0 class 7 Acidimicrobiia 0 6988338 1 84993 0 order 6988338 Acidimicrobiales 6 0 0 1 84994 2158157 Acidimicrobiaceae 3 0 family 0 1 53634 2158157 Acidimicrobium 2 0 genus 53635 species Acidimicrobium ferrooxidans 1 0 2158157 family 2 0 4830181 2448023 0 682522 1 Ilumatobacter 2 0 4830181 genus 467094 1 Ilumatobacter coccineus 0 4830181 species class 6492981 Rubrobacteria 6 0 1 84995 0 6492981 0 Rubrobacterales 5 order 0 1 84996 84997 1 0 family 0 Rubrobacteraceae 4 6492981 0 1 42255 6492981 3 Rubrobacter 0 genus 3267233 Rubrobacter radiotolerans 1 0 species 42256 49319 1 Rubrobacter xylanophilus 0 3225748 species 0 1 84998 40894163 0 Coriobacteriia 30 class order 25519017 0 Eggerthellales 15 1 1643822 0 family 25519017 Eggerthellaceae 14 0 1 1643826 0 0 644652 1 0 3 Gordonibacter 7243040 genus 1335613 Gordonibacter urolithinfaciens 1 0 3294868 species species 3948172 0 Gordonibacter massiliensis 1 1841863 genus 2446250 1 0 79603 79604 1 Denitrobacterium detoxificans 0 2446250 species Adlercreutzia 2 0 2862526 genus 0 447020 1 446660 species 2862526 0 1 Adlercreutzia equolifaciens 0 Slackia 2 3165038 genus 0 84108 1 84110 3165038 Slackia heliotrinireducens 1 0 species 1 0 1447956 genus 1981050 1447956 0 Phoenicibacter massiliensis 1 species 1944646 84162 1 0 1617804 genus Cryptobacterium curtum 1 0 1617804 species 84163 0 1 84111 6736403 3 Eggerthella 0 genus species 3612732 0 1 Eggerthella lenta 84112 no rank 1 0 3123671 2648737 species 3123671 Eggerthella sp. YY7918 1 0 502558 0 1 84999 15375146 0 14 Coriobacteriales order 0 Coriobacteriaceae 6 6389123 family 0 84107 1 84113 1967093 0 1 no rank 1967093 1 Coriobacteriaceae bacterium 68-1-3 0 species 1531429 0 1 33870 2115681 0 Coriobacterium 2 genus 0 Coriobacterium glomerans 1 2115681 species 33871 102106 1 0 genus Collinsella 2 0 2306349 species Collinsella aerofaciens 1 0 2306349 74426 family 8986023 7 Atopobiaceae 0 1 1643824 0 7442218 4 Olsenella 0 genus 0 1 133925 1805478 species 2176737 1 Olsenella sp. Marseille-P2300 0 2638792 1 0 3213585 no rank 712411 species 0 Olsenella sp. oral taxon 807 1 3213585 species 2051896 Olsenella uli 1 0 133926 2 Atopobium 0 1543805 genus 0 1380 1 species Atopobium parvulum 1 0 1543805 1382 class 2639751353 Actinobacteria 601 0 1 1760 0 0 1 622450 5243930 0 4 Actinopolysporales order 0 622451 1 3 Actinopolysporaceae 0 5243930 family Actinopolyspora 2 0 5243930 genus 0 1849 1 414996 species 5243930 0 Actinopolyspora erythraea 1 0 1 85010 223583540 Pseudonocardiales 42 0 order 1 2070 0 family 223583540 0 Pseudonocardiaceae 41 9997872 0 2 Lentzea genus 0 1 165301 species 0 Lentzea guizhouensis 1 9997872 1586287 genus Amycolatopsis 7 0 57844837 1813 1 0 31958 0 1 Amycolatopsis orientalis 9236541 species 2618356 no rank 2 0 18661289 1911175 species 0 1 Amycolatopsis sp. BJA-103 9488490 species 1 Amycolatopsis sp. AA4 0 9172799 1896961 208439 species Amycolatopsis japonica 1 0 9053857 1814 species 0 1 Amycolatopsis methanolica 7237391 13655759 1 Amycolatopsis mediterranei 0 species 33910 1 1851 0 genus 4308349 0 Saccharomonospora 2 1852 species 1 Saccharomonospora viridis 0 4308349 43356 1 0 genus Kutzneria 2 0 9874926 43357 species 1 Kutzneria albida 0 9874926 47320995 Pseudonocardia 8 0 genus 0 1 1847 species 7303989 0 Pseudonocardia dioxanivorans 1 240495 40017006 6 0 no rank 2619320 species 1 Pseudonocardia sp. EC080619-01 0 7205934 1096856 445576 species 6143341 Pseudonocardia sp. AL041005-10 1 0 1641402 species 6300975 1 Pseudonocardia sp. HH130629-09 0 1690815 0 Pseudonocardia sp. HH130630-07 1 6680451 species species 6554452 1 Pseudonocardia sp. EC080625-04 0 1096868 1688404 0 1 Pseudonocardia sp. EC080610-09 7131853 species genus 16379716 3 Actinosynnema 0 1 40566 0 species 0 Actinosynnema pretiosum 1 8131572 42197 40567 species 8248144 Actinosynnema mirum 1 0 34132092 Actinoalloteichus 6 0 genus 0 1 65496 1612552 0 1 Actinoalloteichus sp. ADI127-7 7120854 species 1470176 6606717 0 1 Actinoalloteichus hoggarensis species 0 2 14098135 no rank 2644606 7275385 0 Actinoalloteichus sp. GBA129-24 1 species 1612551 species 6822750 Actinoalloteichus sp. AHMU CJ021 1 0 2072503 340345 species 6306386 0 Actinoalloteichus hymeniacidonis 1 6986413 Prauserella 2 0 genus 0 1 142577 530584 species Prauserella marina 1 0 6986413 1 2071 0 genus 9360653 0 2 Saccharothrix 103731 species 0 Saccharothrix espanaensis 1 9360653 1 674734 0 genus 7405112 2 Alloactinosynnema 0 no rank 7405112 1 0 2636053 1653480 0 1 Alloactinosynnema sp. L-07 7405112 species 2029 1 0 genus 2 Kibdelosporangium 0 11759770 species 0 1 Kibdelosporangium phytohabitans 11759770 860235 0 2 Saccharopolyspora 8212805 genus 0 1835 1 1836 Saccharopolyspora erythraea 1 0 8212805 species 414714 1 0 order Catenulisporales 4 0 10467782 Catenulisporaceae 3 0 10467782 family 0 414877 1 genus 10467782 Catenulispora 2 0 1 414878 0 304895 10467782 0 1 Catenulispora acidiphila species order 6060298 0 Nakamurellales 4 1 1643684 0 family 6060298 Nakamurellaceae 3 0 1 85031 0 genus 2 Nakamurella 0 6060298 53460 1 0 53461 1 Nakamurella multipartita 0 6060298 species 0 1 622452 4956672 0 4 Kineosporiales order family 0 Kineosporiaceae 3 4956672 83778 1 0 1 33981 0 genus 4956672 0 2 Kineococcus 131568 species 4956672 Kineococcus radiotolerans 1 0 1 85006 0 order 355768114 Micrococcales 147 0 family 11319576 Dermacoccaceae 7 0 1 145357 0 Kytococcus 2 0 2785024 genus 0 57499 1 species 2785024 Kytococcus sedentarius 1 0 1276 0 745364 1 Luteipulveratus 2 0 5420910 genus 0 Luteipulveratus mongoliensis 1 5420910 species 571913 0 57495 1 0 Dermacoccus 2 3113642 genus 1274 species Dermacoccus nishinomiyaensis 1 0 3113642 family 4669183 0 Beutenbergiaceae 3 1 125316 0 84756 1 0 genus Beutenbergia 2 0 4669183 84757 species 0 Beutenbergia cavernae 1 4669183 0 1 1268 124938753 0 Micrococcaceae 39 family genus 9190497 Kocuria 4 0 1 57493 0 1 Kocuria palustris 0 2854447 species 71999 3638342 Kocuria flava 1 0 species 446860 0 Kocuria rhizophila 1 2697708 species 72000 0 2 Paenarthrobacter 5226648 genus 0 1742992 1 43663 species 5226648 Paenarthrobacter aurescens 1 0 1645 genus 0 1 3155250 1646 3155250 1 Renibacterium salmoninarum 0 species genus 2 Glutamicibacter 0 3918308 1742989 1 0 species 0 Glutamicibacter arilaitensis 1 3918308 256701 14572341 Pseudarthrobacter 4 0 genus 0 1 1742993 121292 species 1 Pseudarthrobacter sulfonivorans 0 5056151 85085 4980870 1 Pseudarthrobacter chlorophenolicus 0 species 361575 species 1 Pseudarthrobacter phenanthrenivorans 0 4535320 1868332 1 0 genus 0 Neomicrococcus 2 2667837 2667837 0 1 Neomicrococcus aestuarii species 556325 2501097 0 Micrococcus 2 genus 0 1 1269 species 2501097 Micrococcus luteus 1 0 1270 0 1 32207 5989069 Rothia 3 0 genus Rothia mucilaginosa 1 0 3483044 species 43675 0 1 Rothia dentocariosa 2506025 species 2047 0 596707 1 Sinomonas 2 0 4492204 genus 37927 4492204 0 1 Sinomonas atrocyanea species genus 0 Arthrobacter 15 69626068 1663 1 0 656366 8380101 1 Arthrobacter alpinus 0 species 37928 species 0 1 Arthrobacter crystallopoietes 5032705 no rank 56213262 12 0 235627 species 0 1 Arthrobacter sp. U41 4792631 1849032 species 0 Arthrobacter sp. Rue61a 1 5081038 1118963 2020486 species 5063552 0 Arthrobacter sp. YN 1 1494608 0 Arthrobacter sp. PAMC 25486 1 4593579 species 2079227 species 4270237 Arthrobacter sp. PGP41 1 0 1690248 3851242 0 Arthrobacter sp. LS16 1 species species Arthrobacter sp. ATCC 21022 1 0 4434904 1771959 1806905 0 Arthrobacter sp. ZXY-2 1 5058708 species 1357915 5041568 0 1 Arthrobacter sp. QXT-31 species 290399 species 5070478 1 Arthrobacter sp. FB24 0 1652545 4018639 1 Arthrobacter sp. YC-RL1 0 species 1704044 species 4936686 0 1 Arthrobacter sp. ERGS1:01 2078575 1 0 3599434 genus 1618207 species Arthrobacter sp. IHBB 11108 1 0 3599434 family 2769222 0 Jonesiaceae 2 1 85022 0 2769222 0 1 genus 43673 species 2769222 0 1 Jonesia denitrificans 43674 0 145360 1 0 3 Sanguibacteraceae 4253413 family genus 0 Sanguibacter 2 4253413 60919 1 0 species Sanguibacter keddieii 1 0 4253413 60920 no rank 926620 0 2 577468 2038 1 0 genus 0 2 Tropheryma 926620 species 1 Tropheryma whipplei 0 926620 2039 0 85017 1 0 Promicromonosporaceae 9 20031494 family Xylanimonas 2 0 3831380 genus 0 186188 1 186189 3831380 1 Xylanimonas cellulosilytica 0 species 0 1 157920 9065402 Cellulosimicrobium 3 0 genus 2624466 no rank 0 1 4265546 Cellulosimicrobium sp. TH-20 1 0 4265546 species 1980001 1710 species 4799856 Cellulosimicrobium cellulans 1 0 254250 1 0 genus 0 Isoptericola 3 7134712 3826972 0 Isoptericola dokdonensis 1 species 372663 139208 1 Isoptericola variabilis 0 3307740 species 121231254 0 Microbacteriaceae 50 family 0 1 85023 33886 1 0 genus Rathayibacter 3 0 8029001 33888 Rathayibacter tritici 1 0 3354681 species species 0 Rathayibacter toxicus 1 4674320 145458 1 447237 0 genus 4766863 0 Frondihabitans 2 no rank 4766863 1 0 2626248 1795630 species Frondihabitans sp. PAMC 28766 1 0 4766863 genus 3 Cryobacterium 0 8312558 69578 1 0 670052 species 0 1 Cryobacterium arcticum 4351229 3961329 1 0 no rank 2649013 Cryobacterium sp. LW097 1 0 3961329 species 1978566 genus 2 Cnuibacter 0 4351649 1759331 1 0 species 1 Cnuibacter physcomitrellae 0 4351649 1619308 genus 0 Microbacterium 14 47518392 33882 1 0 84292 0 1 Microbacterium chocolatum 3168630 species 36805 3424892 1 Microbacterium aurum 0 species no rank 29907214 8 0 2609290 1938334 1 Microbacterium sp. TPU 3598 0 3822982 species 1916917 species Microbacterium sp. 1.5R 1 0 3620317 species Microbacterium sp. PAMC 28756 1 0 3539061 1795053 1906742 species 3508491 0 Microbacterium sp. BH-3-3-3 1 367477 3475315 1 Microbacterium sp. XT11 0 species 3634864 Microbacterium sp. CGR1 1 0 species 1696072 species 3478219 0 1 Microbacterium sp. str. 'China' 2103230 0 1 Microbacterium sp. No. 7 4827965 species 1714373 162426 species 0 1 Microbacterium hominis 3624793 300019 3410829 1 Microbacterium paludicola 0 species 2033 species 1 Microbacterium testaceum 0 3982034 0 1 337004 2702837 0 Microcella 2 genus species 1 Microcella alkaliphila 0 2702837 279828 genus 0 Aurantimicrobium 2 1622386 1705353 1 0 1622386 Aurantimicrobium minutum 1 0 species 708131 1573 1 0 genus 0 Clavibacter 6 16512394 3395237 1 28447 16512394 0 Clavibacter michiganensis 5 species 1 Clavibacter insidiosus 0 3408062 subspecies 33014 3403786 Clavibacter sepedonicus 1 0 subspecies 31964 1874630 3241713 0 1 Clavibacter capsici subspecies 3063596 0 Clavibacter nebraskensis 1 subspecies 31963 11780796 0 Curtobacterium 4 genus 0 1 2034 no rank 7239748 2 0 257496 3795948 1 Curtobacterium sp. BH-2-1-1 0 species 1905847 1561023 species 0 1 Curtobacterium sp. MR_MD2014 3443800 species Curtobacterium pusillum 1 0 4541048 69373 genus 3689726 0 Microterricola 2 1 518733 0 412690 species Microterricola viridarii 1 0 3689726 0 Pontimonas 2 1760810 genus 0 1434032 1 species 1760810 0 Pontimonas salivibrio 1 1159327 0 1 110932 2955779 0 Leifsonia 2 genus 1575 2955779 0 1 Leifsonia xyli species 0 33877 1 0 2 Agromyces 4373124 genus 453304 Agromyces aureus 1 0 4373124 species 3 0 2854939 no rank 1655488 2854939 3 0 no rank 1655489 2854939 0 3 Rhodoluna genus 0 1 529883 1424506 Candidatus Rhodoluna planktonica 1 0 species 535712 529884 1430433 0 Rhodoluna lacicola 1 species 0 85019 1 0 Brevibacteriaceae 3 8072179 family 1696 1 0 genus 2 Brevibacterium 0 8072179 1 Brevibacterium linens 0 8072179 species 1703 family Intrasporangiaceae 9 0 14548236 85021 1 0 genus 0 2 Serinicoccus 3597394 265976 1 0 no rank 3597394 0 1 2643101 species 3597394 0 Serinicoccus sp. JLT9 1 1758689 genus 3401189 Janibacter 2 0 1 53457 0 species 3401189 0 1 Janibacter indicus 857417 genus 3525271 0 2 Arsenicicoccus 1 267408 0 no rank 0 1 3525271 2663846 3525271 Arsenicicoccus sp. oral taxon 190 1 0 species 1658671 53357 1 0 genus 0 2 Intrasporangium 4024382 species Intrasporangium calvum 1 0 4024382 53358 85018 2627820 0 2 family 1 1862 0 genus 2627820 2 Dermatophilus 0 1863 species Dermatophilus congolensis 1 0 2627820 Dermabacteraceae 11 0 24670207 family 0 85020 1 0 2 Devriesea 2958880 genus 0 472568 1 species 2958880 0 1 Devriesea agamarum 472569 0 43668 1 0 6 Brachybacterium 19319013 genus 43669 species 3614992 0 1 Brachybacterium faecium species 3953253 0 1 Brachybacterium ginsengisoli 1331682 2623841 no rank 3 0 11750768 4385603 0 Brachybacterium sp. P6-10-X1 1 species 1903186 2017484 species 3796663 Brachybacterium sp. VM2412 1 0 2017485 species Brachybacterium sp. VR2415 1 0 3568502 genus 2 Dermabacter 0 2392314 36739 1 0 0 Dermabacter vaginalis 1 2392314 species 1630135 85016 1 0 family Cellulomonadaceae 6 0 15710157 genus 15710157 0 Cellulomonas 5 1 1707 0 species 3526441 0 Cellulomonas gilvus 1 11 2620175 3794193 1 0 no rank 2003551 species 0 1 Cellulomonas sp. PSBB021 3794193 1711 0 Cellulomonas flavigena 1 4123179 species 1708 species 4266344 0 1 Cellulomonas fimi order 842395650 Corynebacteriales 163 0 1 85007 0 697024 3775705 2 0 no rank 3775705 0 Lawsonella 2 genus 0 1 1847725 species Lawsonella clevelandensis 1 0 3775705 1528099 316606 1 0 family 0 Segniliparaceae 3 3157527 286801 1 0 genus 0 Segniliparus 2 3157527 286802 species 3157527 Segniliparus rotundus 1 0 85026 1 0 family Gordoniaceae 9 0 35350058 1 2053 0 genus 35350058 0 8 Gordonia 5290012 Gordonia bronchialis 1 0 species 2054 4428727 0 Gordonia phthalatica 1 species 1136941 0 2 10079034 no rank 2657482 2059875 Gordonia sp. YC-JH1 1 0 4193324 species 337191 0 1 Gordonia sp. KTR9 5885710 species species 1 Gordonia iterans 0 4006485 1004901 species 0 1 Gordonia polyisoprenivorans 5844299 84595 2055 species 5701501 0 1 Gordonia terrae 1762 1 0 family 0 Mycobacteriaceae 57 412703697 1866885 93555926 0 13 genus 1810 species 6235754 Mycobacterium vaccae 1 0 species Mycobacterium phlei 1 0 5349645 1771 species 0 1 Mycobacterium vanbaalenii 6491865 110539 species 1 Mycobacterium gilvum 0 5883060 1804 758802 species 6103712 0 Mycobacterium litorale 1 36814 6415739 0 1 Mycobacterium rhodesiae species 1766 species 1 Mycobacterium fortuitum 0 6254616 Mycobacterium goodii 1 0 7105933 species 134601 1800 0 Mycobacterium chubuense 1 6342624 species 1795 species 0 1 Mycobacterium neoaurum 5421267 1 Mycobacterium thermoresistibile 0 4950685 species 1797 1772 20962296 0 Mycobacterium smegmatis 1 species 6038730 Mycobacterium aurum 1 0 species 1791 1073531 9175985 2 0 genus 875328 4643668 1 Mycobacterium sinense 0 species 4532317 Mycobacterium terrae 1 0 species 1788 670516 genus 0 5 42606796 species 16754693 0 Mycobacterium abscessus 1 36809 1774 5029817 1 Mycobacterium chelonae 0 species 83262 species 11178626 0 Mycobacterium immunogenum 1 1520670 species 4994485 1 Mycobacterium stephanolepidis 0 species 1 Mycobacterium saopaulense 0 4649175 1578165 genus 262501500 34 Mycobacterium 0 1 1763 0 77643 0 4 42244093 species group 0 Mycobacterium canettii 1 4482059 species 78331 1773 1 26102334 species 0 Mycobacterium tuberculosis 3 37762034 1 Mycobacterium africanum 0 4389314 no rank 33894 1765 no rank 7270386 Mycobacterium bovis 1 0 29311 4235765 Mycobacterium haemophilum 1 0 species 1781 Mycobacterium marinum 1 0 6555333 species species group 95509271 8 0 120793 222805 species 1 Mycobacterium chimaera 0 49908161 339268 species 5581643 Mycobacterium colombiense 1 0 species 5501090 1 Mycobacterium paraintracellulare 0 1138383 species 8605876 Mycobacterium avium 1 0 1764 701042 species 5285642 Mycobacterium marseillense 1 0 6766463 1 1767 20626859 0 Mycobacterium intracellulare 3 species subspecies 8271389 0 Mycobacterium yongonense 1 1203599 35617 subspecies 0 1 Mycobacterium indicus pranii 5589007 1809 species 1 Mycobacterium ulcerans 0 5936029 0 1 5232660 species group 2249310 Mycobacterium shigaense 1 0 5232660 species 722731 1769 Mycobacterium leprae 1 0 3268137 species species 6399543 0 Mycobacterium liflandii 1 261524 2642494 no rank 0 12 73129151 1168287 1 Mycobacterium sp. MOTT36Y 0 5613626 species 189918 6256079 0 1 Mycobacterium sp. KMS species 2051552 0 1 Mycobacterium sp. PYR15 6037017 species 1 Mycobacterium sp. VKM Ac-1817D 0 6324222 species 1273687 1879023 species 6579322 1 Mycobacterium sp. djl-10 0 164756 Mycobacterium sp. MCS 1 0 5920523 species 1561223 4855372 Mycobacterium sp. QIA-37 1 0 species species 1 Mycobacterium sp. JS623 0 7221766 212767 6048425 Mycobacterium sp. JLS 1 0 species 164757 1545728 6177406 Mycobacterium sp. EPa45 1 0 species 1682113 species 6053985 1 Mycobacterium sp. YC-RL4 0 1920667 species 6041408 1 Mycobacterium sp. WY10 0 species 0 Mycobacterium sp. NRRL B-3805 1 5421338 1570328 8080416 1 Mycobacterium dioxanotrophicus 0 species 482462 6489764 0 Mycobacterium kansasii 1 species 1768 0 697025 1 0 Hoyosella 2 4863490 genus 639313 species 4863490 Hoyosella subflava 1 0 9402120 4 Tsukamurellaceae 0 family 0 1 85028 Tsukamurella 3 0 9402120 genus 0 2060 1 species 0 Tsukamurella paurometabola 1 4479724 2061 57704 species 4922396 1 Tsukamurella tyrosinosolvens 0 0 85025 1 0 Nocardiaceae 31 197159322 family 0 1 1817 55583955 0 Nocardia 7 genus species 6376062 1 Nocardia farcinica 0 37329 37326 Nocardia brasiliensis 1 0 9185930 species 1 Nocardia nova 0 8348532 species 37330 455432 species Nocardia terpenica 1 0 8918539 6328641 1 Nocardia cyriacigeorgica 0 species 135487 37332 16426251 0 Nocardia seriolae 1 species 141575367 23 Rhodococcus 0 genus 0 1 1827 1 Rhodococcus hoagii 0 5240998 species 43767 192944 70728115 12 0 no rank 679318 1 Rhodococcus sp. WMMA185 0 4444448 species 1045808 0 1 Rhodococcus sp. YL-1 7594958 species species 1 Rhodococcus sp. MTM3W5.2 0 5665081 1805827 1727214 0 1 Rhodococcus sp. H-CA8f 6497607 species species 0 1 Rhodococcus sp. PBTS 2 5316948 1653479 1570939 0 1 Rhodococcus sp. 2G 5596514 species 1 Rhodococcus sp. BH4 0 7019149 species 1807790 935199 species 5413283 0 1 Rhodococcus sp. p52 1033922 species 6148559 1 Rhodococcus sp. WB1 0 Rhodococcus sp. B7740 1 0 5341557 species 1564114 7438324 1 Rhodococcus sp. 008 0 species 1723645 1653478 species 1 Rhodococcus sp. PBTS 1 0 4251687 1833 6734667 0 Rhodococcus erythropolis 1 species 334542 0 1 Rhodococcus qingshengii 6700013 species species 0 1 Rhodococcus ruber 11441518 1830 1828 1 Rhodococcus fascians 0 5502110 species 37919 species 0 Rhodococcus opacus 1 8880502 species 5274756 1 Rhodococcus rhodochrous 0 1829 5447203 0 Rhodococcus pyridinivorans 1 species 103816 5922748 Rhodococcus aetherivorans 1 0 species 191292 species 1 Rhodococcus jostii 0 9702737 132919 family 173559756 0 Corynebacteriaceae 52 1 1653 0 genus 0 51 Corynebacterium 173559756 1716 1 0 species 2359448 0 Corynebacterium atypicum 1 191610 0 1 Corynebacterium maris 2833547 species 575200 species 2601311 0 1 Corynebacterium resistens 258224 42817 2031902 1 Corynebacterium argentoratense 0 species 1230998 2604152 0 Corynebacterium frankenforstense 1 species 43771 species 1 Corynebacterium urealyticum 0 2354272 species [Brevibacterium] flavum 1 0 3339820 92706 no rank 4837369 2 0 2624378 species 1 Corynebacterium sp. NML98-0116 0 2365449 702967 1487956 1 Corynebacterium sp. ATCC 6931 0 2471920 species Corynebacterium diphtheriae 1 0 2795732 species 1717 species 2931780 1 Corynebacterium vitaeruminis 0 38305 169292 species 2819226 0 Corynebacterium aurimucosum 1 571915 3474226 1 Corynebacterium mustelae 0 species species 8764702 1 Corynebacterium glutamicum 0 1718 species 2698995 0 1 Corynebacterium doosanense 1121358 0 1 Corynebacterium ulcerans 4584154 species 65058 2926437 Corynebacterium aquilae 1 0 species 203263 1050174 species 0 Corynebacterium epidermidicanis 1 2692072 1 Corynebacterium ureicelerivorans 0 2328278 species 401472 156978 species 5130927 1 Corynebacterium imitans 0 Corynebacterium falsenii 1 0 2719616 species 108486 species 2446804 Corynebacterium kroppenstedtii 1 0 161879 349751 species 1 Corynebacterium marinum 0 2729219 225326 3222008 0 1 Corynebacterium halotolerans species 1697 2799225 0 1 Corynebacterium ammoniagenes species Corynebacterium terpenotabidum 1 0 2751233 species 89154 191493 Corynebacterium sphenisci 1 0 2594799 species 161896 species 0 1 Corynebacterium camporealensis 4901839 1652495 species 3217288 1 Corynebacterium crudilactis 0 species 2928683 0 Corynebacterium callunae 1 1721 1705 species 0 Corynebacterium stationis 1 8587058 species 0 1 Corynebacterium deserti 3033893 1408191 species 5336673 1 Corynebacterium simulans 0 146827 43770 species 1 Corynebacterium striatum 0 8823163 28028 0 1 Corynebacterium flavescens 2758653 species 35757 3011567 1 Corynebacterium cystitidis 0 species 35755 2354065 1 Corynebacterium kutscheri 0 species 1727 3433007 0 Corynebacterium variabile 1 species 136857 0 Corynebacterium testudinoris 1 2721226 species 1404244 species 0 1 Corynebacterium glyciniphilum 3568218 1231000 0 1 Corynebacterium lactis 2769745 species 161895 0 1 Corynebacterium phocae 2791883 species 160386 species 3132213 1 Corynebacterium casei 0 161899 2830519 1 Corynebacterium singulare 0 species 1719 species 10586046 1 Corynebacterium pseudotuberculosis 0 0 Corynebacterium uterequi 1 2419437 species 1072256 152794 3219505 Corynebacterium efficiens 1 0 species species 2563850 0 1 Corynebacterium jeikeium 38289 187491 species 2518659 0 1 Corynebacterium glaucum 2681312 1 Corynebacterium humireducens 0 species 1223514 1 85029 0 family 7287465 0 Dietziaceae 4 0 37914 1 0 3 Dietzia 7287465 genus 499555 1 Dietzia timorensis 0 3607892 species 0 1 3679573 no rank 2617939 712270 1 Dietzia sp. oral taxon 368 0 3679573 species 85008 1 0 order 0 Micromonosporales 20 110197689 family 19 Micromonosporaceae 0 110197689 28056 1 0 55097090 0 Actinoplanes 6 genus 0 1 1865 species 1 Actinoplanes friuliensis 0 9376071 196914 1866 Actinoplanes missouriensis 1 0 8773466 species 2626549 no rank 0 3 36947553 134676 species 0 Actinoplanes sp. SE50/110 1 18480017 649831 9228054 Actinoplanes sp. N902-109 1 0 species 9239482 Actinoplanes sp. SE50 1 0 species 2033844 genus Plantactinospora 4 0 23410544 673534 1 0 2631981 no rank 0 3 23410544 species 8333965 0 1 Plantactinospora sp. BC1 2108470 0 Plantactinospora sp. BB1 1 8386853 species 2071627 species 0 1 Plantactinospora sp. KBS50 6689726 2024580 0 Verrucosispora 2 6732271 genus 0 84593 1 6732271 Verrucosispora maris 1 0 species 1003110 10969692 Salinispora 3 0 genus 0 1 168694 species 0 1 Salinispora tropica 5183331 168695 168697 0 1 Salinispora arenicola 5786361 species 1873 1 0 genus 0 Micromonospora 3 13988092 0 Micromonospora aurantiaca 1 7025559 species 47850 no rank 0 1 6962533 2617518 0 1 Micromonospora sp. L5 6962533 species 648999 52018 no rank 2461858 1 0 78537 0 1 2461858 no rank 1650658 species 0 1 Actinobacteria bacterium IMCC26256 2461858 1643683 order 0 3 2443540 0 85032 1 Acidothermaceae 3 0 2443540 family genus 2 Acidothermus 0 2443540 28048 1 0 28049 species 2443540 1 Acidothermus cellulolyticus 0 order 8 Geodermatophilales 0 15773354 1643682 1 0 7 Geodermatophilaceae 0 15773354 family 0 85030 1 5322497 0 2 Geodermatophilus genus 0 1 1860 species 5322497 1 Geodermatophilus obscurus 0 1861 0 1 88138 5575517 0 2 Modestobacter genus 477641 species 5575517 Modestobacter marinus 1 0 4875340 0 Blastococcus 2 genus 0 1 38501 138336 species 0 1 Blastococcus saxobsidens 4875340 54915738 Bifidobacteriales 24 0 order 0 1 85004 0 1 31953 54915738 0 Bifidobacteriaceae 23 family 196081 genus 1797862 0 1 78259 0 1 Scardovia inopinata 1797862 species 2701 genus 1685107 0 1 2702 0 1 Gardnerella vaginalis 1685107 species genus 1890857 1 0 196082 78258 species 0 Parascardovia denticolens 1 1890857 genus 19 Bifidobacterium 0 49541912 1678 1 0 species 3233293 0 Bifidobacterium adolescentis 1 1680 1694 2006319 0 Bifidobacterium pseudolongum 1 species 216816 species 3861601 1 Bifidobacterium longum 0 species 0 Bifidobacterium catenulatum 2 4433631 1686 1 2079525 subspecies 2354106 0 1 Bifidobacterium kashiwanohense 630129 1687 species Bifidobacterium coryneforme 1 0 1755151 1683 species 2043306 Bifidobacterium angulatum 1 0 species 1830060 0 Bifidobacterium actinocoloniiforme 1 638619 species 2189842 1 Bifidobacterium animalis 0 28025 1689 2636018 0 Bifidobacterium dentium 1 species 8960237 1 Bifidobacterium breve 0 species 1685 Bifidobacterium scardovii 1 0 3158347 species 158787 1691 1734546 0 1 Bifidobacterium indicum species 1 Bifidobacterium pseudocatenulatum 0 2313752 species 28026 1681 species 1 Bifidobacterium bifidum 0 2658036 1684 0 1 Bifidobacterium asteroides 2178836 species species Bifidobacterium choerinum 1 0 2257294 35760 33905 species 2291643 0 Bifidobacterium thermophilum 1 1 85012 0 order 54573761 0 Streptosporangiales 16 0 2004 1 Streptosporangiaceae 5 0 23416934 family 2000 1 0 genus Streptosporangium 2 0 10369518 2001 10369518 0 Streptosporangium roseum 1 species 13047416 0 Nonomuraea 2 genus 0 1 83681 2593643 no rank 1 0 13047416 0 1 Nonomuraea sp. ATCC 55076 13047416 species 1909395 1 83676 0 family 25517811 Nocardiopsaceae 7 0 3642249 Thermobifida 2 0 genus 0 1 83677 2021 species 3642249 0 Thermobifida fusca 1 0 2013 1 0 4 Nocardiopsis 21875562 genus 53437 species 5848211 0 1 Nocardiopsis alba species 0 Nocardiopsis dassonvillei 1 9885199 2014 280236 species 0 1 Nocardiopsis gilva 6142152 1 2012 0 family 5639016 Thermomonosporaceae 3 0 5639016 2 Thermomonospora 0 genus 0 1 2019 5639016 0 Thermomonospora curvata 1 species 2020 0 1 85011 759517992 Streptomycetales 83 0 order family Streptomycetaceae 82 0 759517992 2062 1 0 0 1883 1 Streptomyces 76 0 726666666 genus species 0 Streptomyces fulvissimus 1 7905758 68202 species 26469547 1 Streptomyces venezuelae 0 54571 species 8532592 1 Streptomyces pristinaespiralis 0 38300 29303 species 16188068 0 Streptomyces cattleya 1 47763 species 0 1 Streptomyces lydicus 25752055 164348 species 1 Streptomyces puniciscabiei 0 9698948 species 7766531 0 1 Streptomyces parvulus 146923 species 9153777 Streptomyces vietnamensis 1 0 362257 67267 9967549 1 Streptomyces alboflavus 0 species 1950 species 0 1 Streptomyces peucetius 8023114 1888 15352626 0 1 Streptomyces albus species species 11138313 Streptomyces violaceusniger 1 0 68280 10752945 0 Streptomyces hygroscopicus 1 species 1912 species Streptomyces avermitilis 1 0 9119895 33903 1969 species Streptomyces chartreusis 1 0 17966634 1935 1 Streptomyces violaceoruber 0 7916045 species 0 Streptomyces noursei 1 9815884 species 1971 species 0 1 Streptomyces bingchenggensis 11936683 379067 68570 species 14246598 0 1 Streptomyces albulus 1642299 8625867 0 1 Streptomyces alfalfae species 1889 8265737 0 Streptomyces ambofaciens 1 species species 9083372 0 1 Streptomyces sp. S10(2016) 1783515 9611874 Streptomyces formicae 1 0 species 1616117 1930 10148695 0 1 Streptomyces scabiei species 285473 species 6543262 Streptomyces rubrolavendulae 1 0 species 10744231 0 Streptomyces malaysiensis 1 92644 1 Streptomyces xinghaiensis 0 7137891 species 1038928 7656104 1 Streptomyces pratensis 0 species 1169025 species 0 Streptomyces reticuli 1 9336224 1926 42684 species Streptomyces collinus 1 0 8377286 14932643 0 1 Streptomyces pluripotens species 1355015 2593676 no rank 210379501 25 0 1972846 species 8110698 Streptomyces sp. Sge12 1 0 6287975 0 Streptomyces sp. SCSIO 03032 1 species 1109743 species 0 Streptomyces sp. Mg1 1 8716193 465541 species Streptomyces sp. CFMR 7 1 0 8307279 1649184 1561022 8274043 0 Streptomyces sp. CCM_MD2014 1 species species 7852859 0 Streptomyces sp. WAC00288 1 2094021 7585034 0 Streptomyces sp. TN58 1 species 234612 1262452 1 Streptomyces sp. 769 0 10338286 species 1849967 1 Streptomyces sp. SAT1 0 7472530 species 1837283 7601864 Streptomyces sp. S8 1 0 species 2135430 9851971 1 Streptomyces sp. P3 0 species 1751294 Streptomyces sp. 4F 1 0 8047771 species 1812480 species 7929999 Streptomyces sp. fd1-xmd 1 0 species 0 Streptomyces sp. Tue 6075 1 7931832 1661694 1495638 Streptomyces sp. M56 1 0 11742376 species 444103 1 Streptomyces sp. CNQ-509 0 8039333 species species 8399509 Streptomyces sp. MOE7 1 0 1961713 1725411 species 10191567 0 Streptomyces sp. CdTB01 1 species Streptomyces sp. PAMC 26508 1 0 7630245 1265601 1964449 8991292 1 Streptomyces sp. 3211 0 species 862751 species 7414440 0 Streptomyces sp. SirexAA-E 1 206662 species 7258031 0 Streptomyces sp. FR-008 1 2059884 0 1 Streptomyces sp. CMB-StM0423 8029398 species species 7232701 0 1 Streptomyces sp. CLI2509 1984801 1841249 11142275 0 1 Streptomyces sp. RTd22 species 1916 1 Streptomyces lividans 0 8345283 species species 7623774 0 Streptomyces glaucescens 1 1907 1914 Streptomyces lavendulae 1 0 8932792 species 1 Streptomyces clavuligerus 0 7590758 species 1901 68249 species 16731053 0 1 Streptomyces pactum 1915 1 Streptomyces lincolnensis 0 10319054 species 629295 species group 16329528 2 0 1482558 7783599 1 0 species subgroup 1908 1 Streptomyces globisporus 0 7783599 species species subgroup 8545929 1 0 1482596 1911 species 8545929 Streptomyces griseus 1 0 5961401 1 Streptomyces xiamenensis 0 species 408015 2049881 1 Streptomyces sp. XZHG99 0 8710171 species 1477431 species group 16125175 0 2 species 0 1 Streptomyces sampsonii 7070328 42239 1902 9054847 0 1 Streptomyces coelicolor species species Streptomyces cyaneogriseus 1 0 7762396 68192 species 0 1 Streptomyces niveus 7990492 193462 1940 species 8144417 Streptomyces albireticuli 1 0 1437453 8122491 0 1 Streptomyces leeuwenhoekii species species 1 Streptomyces griseochromogenes 0 10764674 68214 0 Streptomyces autolyticus 1 10184660 species 75293 553510 species 0 Streptomyces gilvosporeus 1 8482298 32851326 5 Kitasatospora 0 genus 0 1 2063 0 Kitasatospora albolonga 1 8027788 species 68173 2633591 8963858 1 0 no rank Kitasatospora sp. MMS16-BH015 1 0 8963858 species 2018025 species 1 Kitasatospora setae 0 8783278 2066 1894 7076402 1 Kitasatospora aureofaciens 0 species 1643818 2 0 4189976 no rank 0 147067 1 Thermobispora 2 0 4189976 genus 2006 4189976 0 Thermobispora bispora 1 species 0 1 85014 6841557 4 Glycomycetales 0 order family 6841557 Glycomycetaceae 3 0 1 85034 0 0 1 283810 6841557 0 Stackebrandtia 2 genus 6841557 Stackebrandtia nassauensis 1 0 species 283811 0 Candidatus Nanopelagicales 12 21241182 order 0 2039638 1 2162846 0 11 21241182 family 622681 1 0 genus Candidatus Planktophila 7 0 17618123 Candidatus Planktophila dulcis 1 0 4075729 species 1884914 species 0 1 Candidatus Planktophila limnetica 1328793 573600 species 5250003 1 Candidatus Planktophila versatilis 0 1884905 1884913 species Candidatus Planktophila lacus 1 0 4254980 species 1364004 Candidatus Planktophila vernalis 1 0 1884907 0 1 Candidatus Planktophila sulfonica 1344614 species 1884904 0 1 2039639 3623059 Candidatus Nanopelagicus 4 0 genus 1884915 0 Candidatus Nanopelagicus hibericus 1 1223088 species 1884916 1161863 0 Candidatus Nanopelagicus abundans 1 species 1884634 1 Candidatus Nanopelagicus limnes 0 1238108 species 85009 1 0 order 0 Propionibacteriales 34 88735995 1 31957 0 family 54534037 Propionibacteriaceae 20 0 9146044 0 Acidipropionibacterium 2 genus 0 1 1912215 0 1 Acidipropionibacterium acidipropionici 9146044 species 1748 11851253 0 3 Propionibacterium genus 0 1 1743 2649207 0 1 no rank 2608905 671223 species Propionibacterium sp. oral taxon 193 1 0 2649207 species 9202046 0 1 Propionibacterium freudenreichii 1744 genus 0 1 2010679 203133 0 1 2010679 no rank 2633994 1871034 2010679 Propionimicrobium sp. Marseille-P3275 1 0 species 1 1912216 0 genus 8372522 4 Cutibacterium 0 33011 2175244 1 Cutibacterium granulosum 0 species 1747 3569285 0 Cutibacterium acnes 1 species Cutibacterium avidum 1 0 2627993 species 33010 genus 0 Tessaracoccus 5 14021056 72763 1 0 3650768 Tessaracoccus flavescens 1 0 species 399497 1610493 species 0 Tessaracoccus flavus 1 3222890 1332264 species 0 Tessaracoccus aquimaris 1 3934699 2635419 3212699 1 0 no rank 1909732 0 Tessaracoccus sp. T2.5-30 1 3212699 species 2 Pseudopropionibacterium 0 3449360 genus 0 1912217 1 1750 3449360 1 Pseudopropionibacterium propionicum 0 species 1 29404 0 genus 5683123 2 Microlunatus 0 29405 species 0 1 Microlunatus phosphovorus 5683123 family 0 13 Nocardioidaceae 34201958 85015 1 0 7579488 0 Kribbella 2 genus 0 1 182639 7579488 0 1 Kribbella flavida species 182640 genus 0 Aeromicrobium 2 3629239 2040 1 0 2041 species 1 Aeromicrobium erythreum 0 3629239 1839 1 0 genus 4 Nocardioides 0 13511194 2615069 0 2 9134487 no rank species 1 Nocardioides sp. 78 0 3840802 2045452 196162 species 0 1 Nocardioides sp. JS614 5293685 450734 Nocardioides dokdonensis 1 0 4376707 species 0 Micropruina 2 3844677 genus 0 116071 1 75385 species 1 Micropruina glycogenica 0 3844677 0 2044 1 0 2 Pimelobacter 5637360 genus species 0 Pimelobacter simplex 1 5637360 2045 0 1 2037 34312351 0 Actinomycetales 17 order family 0 Actinomycetaceae 16 34312351 2049 1 0 0 1069494 1 Trueperella 2 0 3453353 genus 1661 species 3453353 1 Trueperella pyogenes 0 genus 0 1 1986154 28263 species 1986154 1 Arcanobacterium haemolyticum 0 28264 1 0 2049088 genus 2529408 52773 species 0 Actinomyces meyeri 1 2049088 22517970 0 9 Actinomyces genus 0 1 1654 1912795 species 1 Actinomyces sp. VUL4_3 0 2207832 544580 3042917 1 Actinomyces oris 0 species 1960083 0 1 Actinomyces gaoshouyii 2359360 species no rank 9963699 0 3 2609248 2081702 species 1 Actinomyces sp. oral taxon 897 0 3249416 712122 species 3836419 1 Actinomyces sp. oral taxon 414 0 1851395 2877864 0 1 Actinomyces sp. Chiba101 species 111015 species 3051613 0 Actinomyces radicidentis 1 1852377 1 Actinomyces pacaensis 0 1892549 species genus 2159306 1 0 1653174 59505 1 Actinotignum schaalii 0 2159306 species 2146480 0 1 genus 2050 2051 species 2146480 Mobiluncus curtisii 1 0 85013 1 0 order 0 8 Frankiales 36070374 0 74712 1 Frankiaceae 7 0 36070374 family 36070374 Frankia 6 0 genus 0 1 1854 species 5433628 0 Frankia casuarinae 1 106370 298654 1 Frankia inefficax 0 8815781 species 8982042 1 0 no rank 2632575 species 8982042 Frankia sp. EAN1pec 1 0 298653 7497934 Frankia alni 1 0 species 1859 656024 5340989 1 Frankia symbiont of Datisca glomerata 0 species 4 0 5868490 no rank 1752188 1848756 1456516 0 1 Actinobacteria bacterium IMCC26103 species 1848755 1551612 0 Actinobacteria bacterium IMCC26077 1 species 1848255 species 0 1 Actinobacteria bacterium IMCC25003 1353947 species 0 1 Actinobacteria bacterium IMCC19121 1506415 1848754 0 5 Thermoleophilia 6359369 class 0 1497346 1 6359369 0 Solirubrobacterales 4 order 0 1 588673 0 1 320583 6359369 Conexibacteraceae 3 0 family 1 191494 0 genus 6359369 0 Conexibacter 2 191495 species 6359369 Conexibacter woesei 1 0 0 200795 1 0 46 Chloroflexi 60611136 phylum class 6914508 0 Thermomicrobia 9 1 189775 0 order 0 Thermomicrobiales 4 2920744 189776 1 0 family Thermomicrobiaceae 3 0 2920744 189777 1 0 0 1 499 2920744 0 2 Thermomicrobium genus 500 species Thermomicrobium roseum 1 0 2920744 4 0 3993764 subclass 85000 85001 1 0 order 0 Sphaerobacterales 4 3993764 3 0 3993764 suborder 255728 0 1 85002 3993764 0 Sphaerobacteraceae 3 family 0 1 2056 3993764 Sphaerobacter 2 0 genus 2057 3993764 Sphaerobacter thermophilus 1 0 species 1 301297 0 class 7728168 0 Dehalococcoidia 8 4 Dehalococcoidales 0 3948869 order 0 1202465 1 1202464 3 0 3948869 family 0 61434 1 Dehalococcoides 3 0 3948869 genus species 2475321 0 Dehalococcoides mccartyi 1 61435 237581 no rank 1473548 0 1 1522671 1473548 0 Dehalococcoides sp. UCH007 1 species genus 3779299 Dehalogenimonas 3 0 1 670486 0 1839801 species 0 1 Dehalogenimonas formicexedens 2092789 species 1686510 Dehalogenimonas lykanthroporepellens 1 0 552810 0 475962 1 Caldilineae 5 0 5144873 class 0 475963 1 Caldilineales 4 0 5144873 order family 3 Caldilineaceae 0 5144873 475964 1 0 1 233191 0 genus 5144873 0 Caldilinea 2 133453 1 Caldilinea aerophila 0 5144873 species 1382928 1 0 class 0 5 Ardenticatenia 5033966 1 1382929 0 order 5033966 0 4 Ardenticatenales 1 1382930 0 family 5033966 3 Ardenticatenaceae 0 1988031 1 0 genus Candidatus Promineofilum 2 0 5033966 1806508 species 0 1 Candidatus Promineofilum breve 5033966 0 32061 1 0 Chloroflexia 11 26737318 class 0 1 32064 26737318 0 Chloroflexales 10 order suborder 4 0 11524896 1508595 0 1 1508635 11524896 0 4 Roseiflexaceae family genus 3 Roseiflexus 0 11524896 120961 1 0 Roseiflexus castenholzii 1 0 5723298 species 120962 2609473 no rank 5801598 1 0 5801598 0 1 Roseiflexus sp. RS-1 species 357808 suborder 15212422 0 5 1508594 family 15212422 Chloroflexaceae 5 0 1 1106 0 1 1107 0 genus 15212422 Chloroflexus 4 0 species 10527491 2 Chloroflexus aurantiacus 0 1 1108 5258541 5268950 1 Chloroflexus sp. Y-400-fl 0 no rank 480224 Chloroflexus aggregans 1 0 4684931 species 152260 1 292625 0 class 9052303 0 7 Anaerolineae 1 292629 0 order 9052303 0 6 Anaerolineales 0 292628 1 0 5 Anaerolineaceae 9052303 family 2019482 genus 2574431 0 1 1986204 species 2574431 Brevefilum fermentans 1 0 no rank 2945494 1 0 1324991 1889813 species 2945494 0 1 Anaerolineaceae bacterium oral taxon 439 genus 3532378 2 Anaerolinea 0 1 233189 0 167964 species 0 Anaerolinea thermophila 1 3532378 1798711 no rank 138 0 488514068 1 1117 0 phylum 488514068 0 Cyanobacteria 138 no rank 1 0 2794318 34079 1 0 2794318 no rank 1983111 718217 2794318 cyanobacterium endosymbiont of Epithemia turgida 1 0 species order 0 33 Nostocales 181061726 1161 1 0 0 1 7899568 no rank 201821 1 0 7899568 no rank 1219117 1940762 7899568 Nostocales cyanobacterium HT-58-2 1 0 species family 0 2 5826863 1892263 genus 5826863 2 Fischerella 0 1 1190 0 494603 1 0 5826863 no rank 1752063 5826863 Fischerella sp. NIES-3754 1 0 species 2661849 family 57879017 0 8 57879017 Calothrix 8 0 genus 0 1 1186 2619626 no rank 50918625 6 0 species 0 Calothrix sp. NIES-4101 1 10561507 2005461 12049274 0 Calothrix sp. NIES-4071 1 species 2005469 5985875 0 1 Calothrix sp. NIES-3974 species 2005462 99598 species 0 Calothrix sp. PCC 7507 1 7023215 1337936 species 6420126 1 Calothrix sp. 336/3 0 Calothrix sp. NIES-2098 1 0 8878628 species 1954171 32054 species 0 1 Calothrix parietina 6960392 family 0 Rivulariaceae 3 8728773 1185 1 0 2 Rivularia 0 8728773 genus 0 373984 1 2676603 no rank 8728773 0 1 1 Rivularia sp. PCC 7116 0 8728773 species 373994 family Nostocaceae 18 0 100727505 1162 1 0 0 1163 1 0 4 Anabaena 18150994 genus 1165 species 1 Anabaena cylindrica 0 7063285 2619674 no rank 11087709 2 0 1647413 5782034 1 Anabaena sp. WA102 0 species 46234 species Anabaena sp. 90 1 0 5305675 Nostoc 10 0 69984614 genus 0 1177 1 1306274 species 0 Nostoc flagelliforme 1 10231233 no rank 7 0 50694190 2593658 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 7339908 species 1618022 species 1 Nostoc sp. PCC 7107 0 6329823 317936 7211789 Nostoc sp. PCC 7120 1 0 species 103690 1869241 species 7207640 1 Nostoc sp. CENA543 0 8898590 1 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 0 species 1261031 species 6987571 0 1 Nostoc sp. NIES-3756 1751286 28072 species 6718869 1 Nostoc sp. PCC 7524 0 272131 1 Nostoc punctiforme 0 9059191 species 1 264688 0 genus 12591897 Trichormus 3 0 1164 species 0 Trichormus azollae 1 5486145 1 Trichormus variabilis 0 7105752 species 264691 1 1890505 0 order 6689401 0 3 Chroococcidiopsidales family Chroococcidiopsidaceae 2 0 6689401 1890528 1 0 0 1 6689401 genus 54298 54299 6689401 1 Chroococcidiopsis thermalis 0 species 146448209 0 Synechococcales 51 order 0 1 1890424 1890429 8361599 0 1 family 1 0 8361599 genus 155977 species Acaryochloris marina 1 0 8361599 155978 14126593 0 4 family 1890428 14126593 0 Synechocystis 4 genus 0 1 1142 2640012 no rank 14126593 3 0 1148 species 6436711 0 Synechocystis sp. PCC 6803 1 3950993 1 Synechocystis sp. IPPAS B-1465 0 species 2116702 1147 species 3738889 Synechocystis sp. PCC 6714 1 0 family 5508414 4 0 1213 5508414 0 Prochlorococcus 4 genus 0 1 1218 1219 species 1799150 0 1 Prochlorococcus marinus 2627481 no rank 2 0 3709264 species Prochlorococcus sp. MIT 0604 1 0 1780061 1501268 1501269 species 1929203 1 Prochlorococcus sp. MIT 0801 0 1890436 family 4885680 1 0 1 0 4885680 genus 1152 2593292 no rank 4885680 1 0 species 0 1 Pseudanabaena sp. PCC 7367 4885680 82654 family 24314736 Leptolyngbyaceae 6 0 1 1890438 0 Leptolyngbya 5 0 24314736 genus 0 47251 1 2650499 17367868 0 3 no rank species 5480261 0 Leptolyngbya sp. O-77 1 1080068 1752064 species 0 Leptolyngbya sp. NIES-3755 1 6761657 111781 species 5125950 Leptolyngbya sp. PCC 7376 1 0 1184 species 6946868 0 Leptolyngbya boryana 1 1 1890426 0 family 83677103 0 Synechococcaceae 32 genus 70938329 0 Synechococcus 26 1 1129 0 33070 species 2659739 0 Synechococcus lividus 1 no rank 0 23 65559328 2626047 species 2572069 Synechococcus sp. KORDI-52 1 0 585425 195248 species Synechococcus sp. PCC 8807 1 0 3304088 species 0 1 Synechococcus sp. PCC 73109 3298676 374982 84588 species 0 1 Synechococcus sp. WH 8102 2434428 3583735 1 Synechococcus sp. PCC 7502 0 species 1173263 0 1 Synechococcus sp. KORDI-49 2585813 species 585423 1350461 1 Synechococcus sp. UTEX 2973 0 2744626 species 1280380 2789000 0 Synechococcus sp. KORDI-100 1 species 2606748 1 Synechococcus sp. CC9311 0 species 64471 1827144 species 3123859 0 1 Synechococcus sp. NIES-970 species 0 1 Synechococcus sp. WH 8109 2111515 166314 32049 species 1 Synechococcus sp. PCC 7002 0 3409935 374981 3345085 Synechococcus sp. PCC 7003 1 0 species 1 Synechococcus sp. JA-3-3Ab 0 2932766 species 321327 species 2510659 0 1 Synechococcus sp. CC9605 110662 species 0 1 Synechococcus sp. PCC 6312 3720499 195253 32051 2366980 Synechococcus sp. WH 7803 1 0 species 29410 2429688 0 Synechococcus sp. WH 8103 1 species 3046682 0 1 Synechococcus sp. JA-2-3B'a(2-13) species 321332 2750634 0 1 Synechococcus sp. SynAce01 species 1916956 316279 2234828 Synechococcus sp. CC9902 1 0 species species 0 Synechococcus sp. RCC307 1 2224914 316278 species 0 Synechococcus sp. PCC 7117 1 3432101 195498 32046 species 0 Synechococcus elongatus 1 2719262 146785 1 0 2593857 genus species 2593857 0 1 Thermosynechococcus elongatus 146786 0 167375 1 Cyanobium 3 0 6363909 genus 2627006 no rank 1 0 3021545 Cyanobium sp. NIES-981 1 0 3021545 species 1851505 59930 Cyanobium gracile 1 0 3342364 species 13034 genus 0 1 3781008 292566 0 Dactylococcopsis salina 1 3781008 species family 5574084 2 0 2303730 0 2 Halomicronema 5574084 genus 0 170610 1 1209493 1 Halomicronema hongdechloris 0 5574084 species subclass 126141489 36 0 1301283 0 1 1150 57589426 16 Oscillatoriales 0 order 5620407 1 0 family 1892255 241421 0 1 5620407 genus 241425 5620407 1 Crinalium epipsammum 0 species 0 1892254 1 0 5 Oscillatoriaceae 25785180 family genus 0 1 9708656 1155738 species 1 Moorea producens 0 9708656 1155739 0 1158 1 0 Oscillatoria 3 16076524 genus 118323 0 1 Oscillatoria acuminata 7804270 species 482564 1 Oscillatoria nigro-viridis 0 8272254 species 1 1892252 0 family 15716618 0 Microcoleaceae 3 genus 7750108 0 1 1205 species Trichodesmium erythraeum 1 0 7750108 1206 44471 1 0 7966510 genus no rank 1 0 7966510 2642155 1173027 0 Microcoleus sp. PCC 7113 1 7966510 species Cyanothecaceae 3 0 5786110 family 0 1892249 1 genus 2 Cyanothece 0 5786110 43988 1 0 2649277 no rank 1 0 5786110 395961 Cyanothece sp. PCC 7425 1 0 5786110 species Coleofasciculaceae 3 0 4681111 family 0 1892251 1 genus 4681111 Geitlerinema 2 0 1 63132 0 no rank 1 0 4681111 2648775 1173025 species 0 1 Geitlerinema sp. PCC 7407 4681111 68552063 0 20 Chroococcales order 0 1 1118 35070511 Aphanothecaceae 8 0 family 0 1 1890450 1 0 1443806 genus 1453359 713887 species 1443806 0 Candidatus Atelocyanobacterium thalassa 1 92682 1 0 4179170 no rank 76023 genus 0 1 4179170 2632878 1 0 4179170 no rank 4179170 0 Halothece sp. PCC 7418 1 species 65093 genus 0 2 14396117 28070 2546359 0 1 7841948 species 497965 no rank 1 Cyanothece sp. PCC 7822 0 7841948 6554169 1 0 species 2546356 65393 no rank 1 Cyanothece sp. PCC 7424 0 6554169 263510 genus 0 1 5460377 2546360 5460377 0 1 species 0 Cyanothece sp. ATCC 51142 1 5460377 no rank 43989 2546365 9591041 0 2 genus 9591041 0 2 species 2546366 41431 4787694 1 Cyanothece sp. PCC 8801 0 no rank 4803347 1 Cyanothece sp. PCC 8802 0 no rank 395962 1890452 1 0 family 0 Cyanobacteriaceae 2 4176973 102234 genus 4176973 0 1 379064 4176973 1 Cyanobacterium aponinum 0 species 1890449 1 0 family Microcystaceae 4 0 9951212 0 1125 1 0 Microcystis 3 9951212 genus 0 1 Microcystis aeruginosa 4930969 species 1126 2643300 5020243 0 1 no rank 5020243 1 Microcystis sp. MC19 0 species 1967666 1890464 1 0 family Chroococcaceae 5 0 19353367 102231 5882710 1 0 genus 0 1 5882710 no rank 2623012 1173026 5882710 1 Gloeocapsa sp. PCC 7428 0 species 669357 2 0 8468137 genus 2625037 0 2 8468137 no rank species 4042078 0 Geminocystis sp. NIES-3708 1 1615909 4426059 1 Geminocystis sp. NIES-3709 0 species 1617448 genus 0 1 5002520 268175 2648896 0 1 5002520 no rank 2005460 species 5002520 Chondrocystis sp. NIES-4102 1 0 order 0 7 Pleurocapsales 15995115 52604 1 0 1890498 family 3 0 11008298 11008298 3 Stanieria 0 genus 0 1 102115 2642663 no rank 1 0 5463308 1807358 5463308 Stanieria sp. NIES-3757 1 0 species 0 Stanieria cyanosphaera 1 5544990 species 102116 1890500 1 0 family 3 Hyellaceae 0 4986817 genus Pleurocapsa 2 0 4986817 44474 1 0 54308 4986817 0 Pleurocapsa minor 1 species class 0 Gloeobacteria 6 9383810 307596 1 0 1 307595 0 order 9383810 Gloeobacterales 5 0 1890422 1 0 family 0 4 Gloeobacteraceae 9383810 genus Gloeobacter 3 0 9383810 33071 1 0 1416614 4724791 Gloeobacter kilaueensis 1 0 species 33072 0 Gloeobacter violaceus 1 4659019 species phylum 36 0 76359081 1297 0 36 Deinococci 76359081 class 0 188787 1 0 1 118964 48868754 0 18 Deinococcales order family 0 14 Deinococcaceae 45608356 183710 1 0 1298 1 0 genus Deinococcus 13 0 45608356 Deinococcus proteolyticus 1 0 2886836 species 55148 1309411 1 Deinococcus soli Cha et al. 2016 0 3236984 species 1182568 species 1 Deinococcus puniceus 0 2971983 1299 6628921 1 Deinococcus radiodurans 0 species species 0 1 Deinococcus peraridilitoris 4513714 432329 species 3264334 0 1 Deinococcus actinosclerus 1768108 310783 3855329 0 1 Deinococcus deserti species 502394 0 Deinococcus gobiensis 1 4406036 species species 0 1 Deinococcus swuensis 3531443 1182571 species 0 1 Deinococcus geothermalis 3247018 68909 3567228 0 1 no rank 2623546 2080419 Deinococcus sp. NW-56 1 0 3567228 species species Deinococcus maricopensis 1 0 3498530 309887 0 1 332247 3260398 0 Trueperaceae 3 family 332248 1 0 genus 0 Truepera 2 3260398 332249 species 0 1 Truepera radiovictrix 3260398 1 68933 0 order 27490327 Thermales 17 0 1 188786 0 family 27490327 0 Thermaceae 16 208447 1 0 genus 0 Oceanithermus 2 2439291 0 Oceanithermus profundus 1 2439291 species 187137 0 Marinithermus 2 2269167 genus 0 186191 1 186192 species 2269167 0 1 Marinithermus hydrothermalis 0 Meiothermus 3 6819126 genus 0 65551 1 0 Meiothermus ruber 1 3097457 species 277 52022 1 Meiothermus silvanus 0 3721669 species 0 8 Thermus 15962743 genus 0 270 1 1 Thermus brockianus 0 2388273 species 56956 0 Thermus thermophilus 1 2199728 species 274 species 2338641 Thermus aquaticus 1 0 271 2619321 no rank 2263488 0 1 1111069 2263488 0 1 Thermus sp. CCB_US3_UF1 species species 0 Thermus parvatiensis 1 2016098 456163 37636 species Thermus scotoductus 1 0 2355186 2401329 Thermus oshimai 1 0 species 56957 544448 0 94 99676330 phylum 1 31969 0 class 93479416 Mollicutes 91 0 order 41327286 43 Mycoplasmatales 0 1 2085 0 1 2092 0 family 41327286 0 42 Mycoplasmataceae genus 39165073 Mycoplasma 39 0 1 2093 0 Mycoplasma bovoculi 1 0 760240 species 45362 2094 species 678592 0 Mycoplasma arginini 1 650228 0 Mycoplasma wenyonii 1 species 65123 51365 Mycoplasma yeatsii 1 0 895051 species 984991 0 Mycoplasma parvum 1 564395 species 2097 579782 0 Mycoplasma genitalium 1 species 822985 Mycoplasma synoviae 1 0 species 2109 934379 Mycoplasma crocodyli 1 0 species 50052 species 1175995 0 Mycoplasma hominis 1 2098 4887108 0 3 species group 656088 species 0 1 Mycoplasma leachii 1008951 2105 species 0 1 Mycoplasma capricolum 1777990 2095 0 1 Mycoplasma mycoides 2100167 species 2102 species 796464 1 Mycoplasma californicum 0 2113 57372 species Mycoplasma suis 1 0 725850 1 Mycoplasma gallisepticum 0 969960 species 2096 species Mycoplasma canis 1 0 933117 29555 species Mycoplasma fermentans 1 0 1048137 2115 86660 species 2150259 0 1 Mycoplasma dispar species 1 Mycoplasma arthritidis 0 820453 2111 1147259 0 1 Mycoplasma haemofelis species 29501 species 1 Mycoplasma hyopneumoniae 0 917129 2099 28227 0 Mycoplasma penetrans 1 1358633 species 2107 species 963879 1 Mycoplasma pulmonis 0 29554 Mycoplasma canadense 1 0 693241 species species 2354562 Mycoplasma bovis 1 0 28903 847985 Mycoplasma bovirhinis 1 0 species 29553 171632 702511 Mycoplasma ovis 1 0 species 2123 846299 0 1 Mycoplasma putrefaciens species 2100 species 836420 0 1 Mycoplasma hyorhinis 778866 1 Mycoplasma flocculare 0 species 2128 species 1 Mycoplasma bovigenitalium 0 853553 2112 2104 2179475 1 Mycoplasma pneumoniae 0 species 136241 919992 Mycoplasma haemocanis 1 0 species species 777079 0 Mycoplasma mobile 1 2118 species 0 1 Mycoplasma pullorum 1007172 48003 171284 species 998123 0 Mycoplasma cynos 1 942070 0 Mycoplasma agalactiae 1 species 2110 2683645 647830 0 1 no rank 1749074 647830 1 Mycoplasma sp. (ex Biomphalaria glabrata) 0 species 2129 genus 2162213 0 2 Ureaplasma urealyticum 1 0 874478 species 2130 134821 species 1287735 0 Ureaplasma parvum 1 10191125 0 9 order 186329 2146 10191125 0 9 family 4 0 6516133 genus 2147 1554229 0 1 Acholeplasma palmae species 38986 61635 species 1 Acholeplasma brassicae 0 1877792 1587120 0 Acholeplasma oculi 1 species 35623 2148 1496992 Acholeplasma laidlawii 1 0 species 33926 5 0 3674992 genus 85630 601943 1 0 species group species 601943 0 1 Candidatus Phytoplasma mali 37692 85632 species group 919869 1 0 species 919869 0 1 Candidatus Phytoplasma australiense 59748 species group 3 0 2153180 85620 853092 1 Onion yellows phytoplasma 0 species 100379 species 0 1 Aster yellows witches'-broom phytoplasma 723970 229545 576118 0 1 Maize bushy stunt phytoplasma species 202462 order 41961005 0 38 Entomoplasmatales 1 186328 0 12746767 0 Entomoplasmataceae 13 family 0 1 33925 genus 0 Mesoplasma 8 9163385 46239 1 0 species 1674858 0 Mesoplasma lactucae 1 138853 2151 species Mesoplasma florum 1 0 2382286 0 Mesoplasma coleopterae 1 800407 species 324078 216427 854780 Mesoplasma chauliocola 1 0 species 225999 species 908214 1 Mesoplasma syrphidae 0 219745 species 846907 Mesoplasma tabanidae 1 0 species 1695933 0 1 Mesoplasma entomophilum 2149 46238 genus 0 4 3583382 81459 845295 0 Entomoplasma melaleucae 1 species 214888 Entomoplasma luminosum 1 0 1031560 species species 1 Entomoplasma somnilux 0 868413 215578 74700 Entomoplasma freundtii 1 0 838114 species 1 2131 0 family 29214238 0 24 Spiroplasmataceae 0 2132 1 0 Spiroplasma 23 29214238 genus 216937 species 1 Spiroplasma floricola 0 1284130 1 Spiroplasma chrysopicola 0 1123322 species 216933 216946 2522749 0 Spiroplasma turonicum 1 species 2136 891575 0 1 Spiroplasma monobiae species no rank 0 2 2399261 2637901 species 1199640 0 1 Spiroplasma sp. TU-14 1898044 1199621 0 Spiroplasma sp. NBRC 100390 1 species 1914410 1514561 0 1 Spiroplasma kunkelii species 47834 216945 0 Spiroplasma syrphidicola 1 1107344 species 2144 species 0 1 Spiroplasma mirum 2265199 1160484 0 Spiroplasma atrichopogonis 1 species 1114980 362837 species 1179577 Spiroplasma cantharicola 1 0 216936 945296 0 1 Spiroplasma diminutum species species Spiroplasma clarkii 1 0 1560007 2139 315358 1365235 0 Spiroplasma eriocheiris 1 species 216935 0 Spiroplasma culicicola 1 1175131 species 2133 0 Spiroplasma citri 1 1640878 species 216934 0 1 Spiroplasma corruscae 1204639 species 216944 1075953 0 1 Spiroplasma sabaudiense species 2145 1086278 0 Spiroplasma taiwanense 1 species species 0 Spiroplasma helicoides 1 1326546 216938 2137 species 1160554 0 Spiroplasma apis 1 species 0 Spiroplasma litorale 1 1225519 216942 1912503 genus 1878735 1 0 no rank 0 1 1878735 2624196 1541959 0 1 Candidatus Izimaplasma sp. HR1 1878735 species 713063 no rank 4318179 2 0 1911683 0 Tenericutes bacterium MZ-XQ 1 2157199 species 1 Tenericutes bacterium MO-XQ 0 2160980 species 1911684 0 1 1239 2396734337 0 Firmicutes 668 phylum 909932 1 0 class Negativicutes 29 0 41340571 0 1843489 1 0 Veillonellales 10 10413847 order family 10413847 9 Veillonellaceae 0 1 31977 0 genus 0 1 1274073 39948 species 0 1 Dialister pneumosintes 1274073 39950 genus Megasphaera 2 0 2516494 906 1 0 species 2516494 Megasphaera elsdenii 1 0 907 0 909928 1 Negativicoccus 2 0 1360589 genus 1360589 1 Negativicoccus massiliensis 0 species 1702287 29465 1 0 genus 0 Veillonella 3 5262691 29466 species 3221401 Veillonella parvula 1 0 2041290 0 1 Veillonella rodentium species 248315 4817534 Acidaminococcales 4 0 order 0 1 1843488 family 3 Acidaminococcaceae 0 4817534 909930 1 0 904 genus 0 2 4817534 species 2329769 0 1 Acidaminococcus fermentans 905 187327 species 0 Acidaminococcus intestini 1 2487765 1 909929 0 order 26109190 Selenomonadales 14 0 1843490 1 0 family 0 Sporomusaceae 4 10496226 0 3 Pelosinus 10496226 genus 0 365348 1 5115410 1 0 no rank 2629460 species 5115410 0 1 Pelosinus sp. UFO1 484770 species 5380816 1 Pelosinus fermentans 0 365349 1843491 1 0 family 0 Selenomonadaceae 9 15612964 Selenomonas 6 0 13382622 genus 0 970 1 species 2568361 0 1 Selenomonas sputigena 69823 2637378 3 0 7182328 no rank Selenomonas sp. oral taxon 478 1 0 2284135 species 712538 713030 species 2458072 1 Selenomonas sp. oral taxon 136 0 1884263 2440121 1 Selenomonas sp. oral taxon 920 0 species 971 0 Selenomonas ruminantium 1 3631933 species 0 158846 1 0 Megamonas 2 2230342 genus 158847 species 2230342 0 1 Megamonas hypermegale no rank 3487126 0 2 33974 84086 no rank 1 0 1622248 243899 0 endosymbiont 'TC1' of Trimyema compressum 1 1622248 species genus 1864878 0 1 1930845 0 1 Ndongobacter massiliensis 1864878 species 1871025 526524 class 7 0 14542766 526525 1 0 order Erysipelotrichales 7 0 14542766 family 14542766 6 Erysipelotrichaceae 0 1 128827 0 191303 2622031 1 0 genus 2638206 no rank 0 1 2622031 1712675 species 1 Turicibacter sp. H121 0 2622031 no rank 4468297 0 1 433334 no rank 1 0 4468297 544447 4468297 0 Erysipelotrichaceae bacterium I46 1 species 1834207 1729679 1 0 2542486 genus species 2542486 0 1 Faecalibaculum rodentium 1702221 1647 4909952 0 2 genus species 0 Erysipelothrix larvae 1 2511486 1514105 species 2398466 0 1 Erysipelothrix rhusiopathiae 1648 1737404 1 0 class Tissierellia 13 0 15815967 no rank 1741785 0 1 1737407 1582879 genus 1741785 1 0 0 Ezakiella massiliensis 1 1741785 species 1852374 1737405 order 14074182 0 11 family 0 Peptoniphilaceae 9 10965934 1570339 1 0 0 1 165779 4078848 0 Anaerococcus 3 genus 2080215 0 Anaerococcus mediterraneensis 1 species 1870984 33034 1998633 0 Anaerococcus prevotii 1 species 150022 0 1 1986740 genus 1260 Finegoldia magna 1 0 1986740 species 0 Parvimonas 2 1627009 genus 0 543311 1 33033 species 0 1 Parvimonas micra 1627009 162289 0 1 1601846 genus 2637196 no rank 1601846 1 0 0 Peptoniphilus sp. ING2-D1G 1 1601846 species 1912856 1161127 0 1 1671491 genus species 0 1 Murdochiella vaginalis 1671491 1852373 2042895 1 0 family 0 Gottschalkiaceae 2 3108248 genus 1 0 3108248 1505664 1556 species 0 Gottschalkia acidurici 1 3108248 class 0 Bacilli 410 1740756006 91061 1 0 order 0 Lactobacillales 157 518352108 186826 1 0 family 13795331 0 8 Aerococcaceae 1 186827 0 0 1375 1 0 Aerococcus 7 13795331 genus species 4067667 Aerococcus urinaeequi 1 0 51665 119206 species Aerococcus sanguinicola 1 0 2033849 species 0 1 Aerococcus christensenii 1634920 87541 1376 species 2027618 0 1 Aerococcus urinae 1377 species 2199877 Aerococcus viridans 1 0 128944 1831400 0 1 Aerococcus urinaehominis species 33958 1 0 family Lactobacillaceae 58 0 226830540 195695955 51 Lactobacillus 0 genus 0 1 1578 1600 1704859 0 Lactobacillus acetotolerans 1 species 1 Lactobacillus delbrueckii 0 3060772 species 1584 2726576 Lactobacillus parabuchneri 1 0 species 152331 1193095 species 1 Lactobacillus hokkaidonensis 0 2400586 89059 species Lactobacillus acidipiscis 1 0 2607423 0 1 Lactobacillus amylolyticus 1636037 species 83683 267363 species Lactobacillus zymae 1 0 2734129 1623 species 2066652 Lactobacillus ruminis 1 0 375175 species 0 1 Lactobacillus backii 14123253 240427 0 1 Lactobacillus paracollinoides 10733574 species 1581 2575738 1 Lactobacillus buchneri 0 species 33959 1 Lactobacillus johnsonii 0 2768706 species 1590 0 Lactobacillus plantarum 1 18867430 species 1847728 0 Lactobacillus allii 1 2534178 species 148814 species 1614522 1 Lactobacillus kunkeei 0 1604 species 1 Lactobacillus amylovorus 0 2082540 109790 species 1672949 1 Lactobacillus jensenii 0 2620435 no rank 0 4 10345743 2108362 species 0 1 Lactobacillus sp. D1501 3300892 2099788 2552584 0 Lactobacillus sp. CBA3605 1 species 1545702 species 0 Lactobacillus sp. wkB8 1 1932531 2099789 species Lactobacillus sp. CBA3606 1 0 2559736 1610 species 3045091 0 1 Lactobacillus coryniformis 1587 species 4574199 0 Lactobacillus helveticus 1 3139729 0 1 Lactobacillus paraplantarum species 60520 28038 species 9892990 Lactobacillus curvatus 1 0 1598 1 Lactobacillus reuteri 0 2708381 species species 1610352 0 1 Lactobacillus amylophilus 1603 1 Lactobacillus ginsenosidimutans 0 2590556 species 1007676 1613 4244318 0 1 Lactobacillus fermentum species species 2354088 Lactobacillus kefiranofaciens 1 0 267818 species 7259819 0 Lactobacillus pentosus 1 1589 species 0 Lactobacillus farciminis 1 2551839 1612 53444 species 0 1 Lactobacillus lindneri 2842174 species 1 Lactobacillus crustorum 0 2316479 392416 1 Lactobacillus acidophilus 0 3320069 species 1579 1580 species 0 1 Lactobacillus brevis 9670136 47715 5561468 Lactobacillus rhamnosus 1 0 species 1074467 2790548 0 Lactobacillus heilongjiangensis 1 species 97478 species Lactobacillus mucosae 1 0 2434610 1 Lactobacillus salivarius 0 4242445 species 1624 655183 0 2 9449183 species group 1582 1 Lactobacillus casei 0 3387814 species species 6061369 1 Lactobacillus paracasei 0 1597 637971 3006812 1 Lactobacillus koreensis 0 species species 0 Lactobacillus gasseri 1 1991760 1596 species 0 Lactobacillus alimentarius 1 2401923 1602 1625 1375770 1 Lactobacillus sanfranciscensis 0 species species 1 Lactobacillus sakei 0 7407698 1599 species 1 Lactobacillus gallinarum 0 2374782 52242 1138822 2095860 1 Lactobacillus curieae 0 species 1601 0 Lactobacillus agilis 1 2187209 species 0 Pediococcus 6 31134585 genus 0 1253 1 187452 species 2958378 0 1 Pediococcus claussenii 1670797 species group 0 1 10599728 1254 species 10599728 0 1 Pediococcus acidilactici species 0 Pediococcus pentosaceus 1 3694260 1255 114090 2312041 Pediococcus inopinatus 1 0 species 51663 0 Pediococcus damnosus 1 11570178 species family 0 48 135186455 1300 genus 11995216 Lactococcus 5 0 1 1357 0 1366 species 2292235 0 1 Lactococcus raffinolactis species 2503066 0 Lactococcus piscium 1 1364 1363 species 1 Lactococcus garvieae 0 1971402 5228513 0 1 Lactococcus lactis species 1358 0 1 1301 123191239 43 Streptococcus 0 genus 5507044 Streptococcus gordonii 1 0 species 1302 species 0 Streptococcus oralis 1 2622604 1303 28037 species 1 Streptococcus mitis 0 3110438 species 1975547 0 1 Streptococcus lutetiensis 150055 1349 1858097 0 Streptococcus uberis 1 species 1318 species Streptococcus parasanguinis 1 0 2162630 2327151 0 Streptococcus gallolyticus 1 species 315405 species 2330811 0 1 Streptococcus acidominimus 1326 species 8406582 1 Streptococcus iniae 0 1346 species Streptococcus marmotae 1 0 2322791 1825069 1888195 1 Streptococcus himalayensis 0 2275471 species 119603 2 0 4289600 species group 1334 species 0 1 Streptococcus dysgalactiae 2149105 1336 species 1 Streptococcus equi 0 2140495 59310 1 Streptococcus macedonicus 0 2142762 species 45634 Streptococcus cristatus 1 0 2142100 species 1814128 2182100 Streptococcus halotolerans 1 0 species 1308 species 5060673 Streptococcus thermophilus 1 0 82348 2065522 Streptococcus pluranimalium 1 0 species 7 0 14606872 no rank 2608887 1156433 species 0 Streptococcus sp. I-P16 1 2023580 1759399 species 0 Streptococcus sp. A12 1 1874337 species Streptococcus sp. oral taxon 431 1 0 2177905 712633 species 0 1 Streptococcus sp. NPS 308 1924728 1902136 2178261 0 Streptococcus sp. 'group B' 1 species 1319 species 1 Streptococcus sp. I-G2 0 1992567 1156431 2435494 0 1 Streptococcus sp. FDAARGOS_192 species 1839799 species 0 1 Streptococcus parauberis 2148082 1348 1313 species 1 Streptococcus pneumoniae 0 3095035 2241302 1 Streptococcus pantholopis 0 species 1811193 1314 species 5095760 0 Streptococcus pyogenes 1 400065 2384128 Streptococcus merionis 1 0 species 2195458 Streptococcus pseudopneumoniae 1 0 species 257758 102684 species 1913271 1 Streptococcus infantarius 0 1305 species Streptococcus sanguinis 1 0 2388435 1335 species 2311542 0 Streptococcus equinus 1 197614 species 0 Streptococcus pasteurianus 1 2100077 1307 3647182 Streptococcus suis 1 0 species 1309 Streptococcus mutans 1 0 2365621 species species 1 Streptococcus agalactiae 0 11084941 1311 671232 0 3 6964059 species group 2452858 0 1 Streptococcus intermedius species 1338 0 1 Streptococcus constellatus 1954077 species 76860 1328 species 1 Streptococcus anginosus 0 2557124 5867551 0 1 Streptococcus salivarius species 1304 42134168 Leuconostocaceae 17 0 family 0 1 81850 genus 5 0 24207890 46255 1249 species 1947910 0 Weissella paramesenteroides 1 species Weissella koreensis 1 0 1489241 165096 species 4135763 0 1 Weissella ceti 759620 1631871 2149545 Weissella jogaejeotgali 1 0 species 0 Weissella cibaria 1 14485431 species 137591 1 46254 0 genus 1780517 2 Oenococcus 0 1247 1780517 1 Oenococcus oeni 0 species genus 0 Leuconostoc 9 16145761 1243 1 0 no rank 0 1 1877273 2685106 1877273 Leuconostoc sp. C2 1 0 species 979982 1246 species 0 1 Leuconostoc lactis 1788069 species 0 Leuconostoc citreum 1 1896614 33964 1245 species 3027256 0 1 Leuconostoc mesenteroides 255248 1715191 0 Leuconostoc garlicum 1 species species 2101787 0 Leuconostoc kimchii 1 136609 1252 Leuconostoc carnosum 1 0 1773468 species 1244 1966103 0 1 Leuconostoc gelidum species 8 0 18632729 family 186828 genus Carnobacterium 5 0 11447331 2747 1 0 no rank 0 2 5299800 257487 1 Carnobacterium sp. 17-4 0 2685399 species 208596 2614401 0 Carnobacterium sp. CP1 1 species 1564681 species 2497115 1 Carnobacterium inhibens 0 147709 2751 species 3650416 1 Carnobacterium maltaromaticum 0 2 0 4417490 genus 1470540 no rank 2300992 1 0 2621505 1903686 species 1 Jeotgalibaca sp. PTS2502 0 2300992 0 Jeotgalibaca dankookensis 1 2116498 species 708126 1 0 2767908 genus 191769 2632303 1 0 2767908 no rank 1911586 0 Marinilactibacillus sp. 15R 1 2767908 species 186830 no rank 1548794 0 1 263855 1 0 1548794 no rank 1993866 species 1548794 1 Lactobacillales bacterium 0 80224091 0 16 family 81852 2737 4549589 0 2 genus 1 Vagococcus teuberi 0 2184285 species 519472 species Vagococcus penaei 1 0 2365304 633807 0 1350 1 12 Enterococcus 0 69839291 genus 24066149 Enterococcus faecium 1 0 species 1352 species 2646250 0 1 Enterococcus thailandicus 417368 4155954 Enterococcus wangshanyuanii 1 0 species 2005703 1354 Enterococcus hirae 1 0 4331073 species 2608891 no rank 11260618 3 0 2060306 species 3821476 Enterococcus sp. FDAARGOS_163 1 0 3549293 0 1 Enterococcus sp. FDAARGOS_375 species 2060307 Enterococcus sp. CR-Ec1 1 0 3889849 species 2057791 Enterococcus faecalis 1 0 5884349 species 1351 species Enterococcus casseliflavus 1 0 3427276 37734 4935011 1 Enterococcus mundtii 0 species 53346 species 9132611 Enterococcus durans 1 0 53345 3775653 0 1 genus 51668 0 Tetragenococcus halophilus 1 3775653 species 51669 genus 0 1 2059558 33969 2059558 Melissococcus plutonius 1 0 species 33970 order 0 252 Bacillales 1222403898 1385 1 0 186824 1 0 family 0 4 Thermoactinomycetaceae 3629225 292635 genus 0 1 Laceyella 0 0 Novibacillus 2 3629225 genus 0 1677050 1 1471761 0 Novibacillus thermophilus 1 3629225 species 1 186823 0 family 19668541 Alicyclobacillaceae 9 0 432330 1 0 genus 0 Tumebacillus 3 9766733 5249768 0 Tumebacillus avium 1 species 1903704 1214604 species Tumebacillus algifaecis 1 0 4516965 0 1129704 1 0 3 Kyrpidia 6736941 genus species 1 Kyrpidia sp. EA-1 0 3352175 2055160 3384766 0 Kyrpidia tusciae 1 species 33943 3164867 0 2 Alicyclobacillus genus 0 1 29330 0 1 Alicyclobacillus acidocaldarius 3164867 species 405212 0 186822 1 Paenibacillaceae 46 0 271333848 family genus 4355525 Thermobacillus 2 0 1 76632 0 377615 0 1 Thermobacillus composti 4355525 species 85151 no rank 7781605 0 3 genus 3 Aneurinibacillus 0 7781605 55079 1 0 no rank 3664835 0 1 2642329 1450761 species 1 Aneurinibacillus sp. XH2 0 3664835 1500254 4116770 0 1 Aneurinibacillus soli species genus 36 Paenibacillus 0 241035886 44249 1 0 1406 10814072 0 1 Paenibacillus polymyxa species species 5749967 1 Paenibacillus beijingensis 0 1126833 61624 0 Paenibacillus mucilaginosus 1 8740689 species species 0 1 Paenibacillus terrae 6083395 159743 species 1 Paenibacillus borealis 0 8156808 160799 59893 1 Paenibacillus peoriae 0 6219815 species 162209 species 5200139 0 1 Paenibacillus naphthalenovorans 44251 species 5814491 Paenibacillus durus 1 0 1178515 1 Paenibacillus swuensis 0 5012599 species species Paenibacillus xylanexedens 1 0 7098239 528191 185978 no rank 13 0 89966185 species 7246671 1 Paenibacillus sp. BIHB4019 0 1870819 species 0 Paenibacillus sp. FSL P4-0081 1 8423054 1536769 species 1 Paenibacillus sp. FSL R7-0331 0 6931967 1536773 1536771 species 7718525 Paenibacillus sp. FSL R5-0912 1 0 1536770 species 6787172 0 Paenibacillus sp. FSL R5-0345 1 1 Paenibacillus sp. lzh-N1 0 5641488 species 2069255 species 1 Paenibacillus sp. JDR-2 0 7184930 324057 1695218 species 0 Paenibacillus sp. 32O-W 1 5375858 481743 7121665 0 1 Paenibacillus sp. Y412MC10 species 1566358 5787303 1 Paenibacillus sp. IHBB 10380 0 species 7692748 Paenibacillus sp. FSL H7-0357 1 0 species 1536774 species 7288921 0 1 Paenibacillus sp. FSL R7-0273 1536772 1536775 6765883 Paenibacillus sp. FSL H7-0737 1 0 species 2044880 species group 1 0 7919576 species Paenibacillus riograndensis 1 0 7919576 483937 1464 species 0 Paenibacillus larvae 1 13176472 0 1 Paenibacillus donghaensis 8542333 species 414771 species 4985901 0 Paenibacillus yonginensis 1 1462996 Paenibacillus sabinae 1 0 5270569 species 365617 0 1 Paenibacillus graminis 7166464 species 189425 1870820 species 0 1 Paenibacillus ihbetae 6593819 1616788 species 0 Paenibacillus bovis 1 5517199 1763538 species 0 1 Paenibacillus crassostreae 4757181 189426 species 1 Paenibacillus odorifer 0 6812473 172713 species 0 1 Paenibacillus kribbensis 5778702 species 0 Paenibacillus stellifer 1 5658798 169760 1 55080 0 genus 18160832 Brevibacillus 4 0 1465 0 Brevibacillus laterosporus 1 5253881 species 54913 species 6437015 Brevibacillus formosus 1 0 1393 1 Brevibacillus brevis 0 6469936 species 7 0 25762885 family 186820 genus 20512007 0 Listeria 6 1 1637 0 species 2814133 1 Listeria welshimeri 0 1643 1638 0 Listeria ivanovii 1 5161398 species Listeria innocua 1 0 3093113 species 1642 2797636 1 Listeria seeligeri 0 species 1640 1639 6645727 0 1 Listeria monocytogenes species 5250878 0 1 genus 2755 5250878 0 Brochothrix thermosphacta 1 species 2756 family 39 0 167934611 90964 2778379 1 0 genus 45669 407035 2778379 0 1 Salinicoccus halodurans species 0 69965 1 Macrococcus 4 0 7002784 genus 2391700 0 1 no rank 2619255 1 Macrococcus sp. IME1552 0 2391700 species 1898474 69966 species 1 Macrococcus caseolyticus 0 2247670 1855823 2363414 1 Macrococcus canis 0 species 2005363 1745789 0 1 genus 1849491 1 Auricoccus indicus 0 1745789 species 1279 1 0 genus 33 Staphylococcus 0 156407659 species 0 Staphylococcus lutrae 1 2533115 155085 1284 species Staphylococcus hyicus 1 0 2472129 11321211 1 Staphylococcus xylosus 0 species 1288 214473 0 1 Staphylococcus nepalensis 5998336 species species 0 Staphylococcus simiae 1 2643976 308354 2613271 0 1 Staphylococcus piscifermentans species 70258 6902257 0 1 Staphylococcus lugdunensis species 28035 46127 species 2479423 Staphylococcus felis 1 0 species 8544915 0 Staphylococcus equorum 1 246432 29388 1 Staphylococcus capitis 0 3737596 species 0 1 Staphylococcus schleiferi 12494798 species 1295 species 1 Staphylococcus kloosii 0 2639038 29384 91994 no rank 1 0 2738396 species 0 1 Staphylococcus sp. AntiMn-1 2738396 1715860 species 0 Staphylococcus cohnii 1 2661282 29382 11178520 1 Staphylococcus simulans 0 species 1286 1292 species 0 1 Staphylococcus warneri 2560716 1283 species 6578066 1 Staphylococcus haemolyticus 0 45972 2591084 0 Staphylococcus pasteuri 1 species Staphylococcus stepanovicii 1 0 2439098 species 643214 1280 13150441 0 1 Staphylococcus aureus species 170573 1 Staphylococcus pettenkoferi 0 2502360 species 4190247 Staphylococcus muscae 1 0 species 1294 985002 5558897 0 1 Staphylococcus argenteus species 985762 1 Staphylococcus agnetis 0 2503399 species species 4509494 Staphylococcus pseudintermedius 1 0 283734 1290 species 2253412 0 1 Staphylococcus hominis 0 Staphylococcus saprophyticus 1 6541080 species 29385 species 1 Staphylococcus condimenti 0 5360562 70255 6505285 1 Staphylococcus epidermidis 0 species 1282 2853815 0 1 Staphylococcus sciuri species 1296 61015 Staphylococcus succinus 1 0 2745675 species species Staphylococcus carnosus 1 0 2605765 1281 no rank 20249255 8 0 539002 539738 no rank 1 0 1769679 1378 1769679 0 1 genus 2624949 0 1 1769679 no rank 1785995 species 1769679 0 1 Gemella sp. oral taxon 928 0 7 18479576 no rank 539742 0 1 33986 18479576 Exiguobacterium 7 0 genus 132920 2815863 0 Exiguobacterium antarcticum 1 species no rank 0 4 12622927 2644629 species Exiguobacterium sp. ZWU0009 1 0 3250203 1224749 species 3164195 0 1 Exiguobacterium sp. MH3 1399115 1849031 3208634 0 1 Exiguobacterium sp. U13-1 species species 2999895 Exiguobacterium sp. AT1b 1 0 360911 3040786 Exiguobacterium sibiricum 1 0 species 332410 family 0 Bacillaceae 114 624828259 186817 1 0 genus 3858284 1 0 175304 1472767 3858284 0 Lentibacillus amyloliquefaciens 1 species 444013799 0 Bacillus 67 genus 0 1 1386 Bacillus krulwichiae 1 0 4610863 species 199441 0 1 Bacillus oceanisediminis 5848607 species 665099 0 9 99743641 species group 653685 species Bacillus sonorensis 1 0 4832293 119858 species Bacillus licheniformis 1 0 30493173 1402 1648923 13246538 Bacillus paralicheniformis 1 0 species 72361 species 0 Bacillus vallismortis 1 3929787 1938374 0 3 27685837 species subgroup species 0 1 Bacillus siamensis 4280711 659243 492670 16141041 Bacillus velezensis 1 0 species 1 Bacillus amyloliquefaciens 0 7264085 species 1390 species 1 Bacillus atrophaeus 0 8424866 1452 1423 Bacillus subtilis 1 0 11131147 species 1478 species 1 Bacillus simplex 0 5583751 1547283 4361276 0 Bacillus weihaiensis 1 species 859143 4694375 1 Bacillus kochii 0 species 1 Bacillus muralis 0 5007018 species 264697 300825 species 1 Bacillus lehensis 0 3993073 species 6558835 0 1 Bacillus clausii 79880 86665 species 4202352 1 Bacillus halodurans 0 species 0 1 Bacillus gibsonii 4100094 79881 species 0 Bacillus cellulosilyticus 1 4681672 1413 species 4884713 Bacillus infantis 1 0 324767 1471 1 Bacillus methanolicus 0 3425208 species 4104242 Bacillus flexus 1 0 species 86664 1408 24519476 0 Bacillus pumilus 1 species 79885 species Bacillus pseudofirmus 1 0 4249248 1404 5380541 1 Bacillus megaterium 0 species species 0 Bacillus glycinifermentans 1 9266909 1664069 species 19341716 0 Bacillus safensis 1 561879 species 5313985 1 Bacillus endophyticus 0 135735 4295882 0 Bacillus horikoshii 1 species 79883 33932 species 1 Bacillus cohnii 0 4899141 1479 species 3381292 1 Bacillus smithii 0 19 0 78058679 no rank 185979 1 Bacillus sp. SJ-10 0 4041647 species 563169 1570330 species 0 Bacillus sp. BH072 1 4069641 Bacillus sp. 275 1 0 4051970 species 1941347 666686 0 Bacillus sp. 1NLA3E 1 4815602 species 1827146 5036631 0 1 Bacillus sp. IHB B 7164 species species 4161448 0 Bacillus sp. MD-5 1 2009331 species 0 Bacillus sp. OxB-1 1 3594618 98228 Bacillus sp. SDLI1 1 0 4134042 species 1774743 4109356 0 Bacillus sp. FJAT-14266 1 species 1837130 species 3708888 Bacillus sp. WP8 1 0 756828 4120406 0 1 Bacillus sp. JS species 1127744 0 1 Bacillus sp. H15-1 4162101 species 1856406 1574141 species Bacillus sp. YP1 1 0 4153566 2026248 4166290 0 1 Bacillus sp. 1s-1 species 3422674 1 Bacillus sp. X1(2014) 0 species 1565991 species 0 Bacillus sp. LM 4-2 1 4069266 1628753 4024750 Bacillus sp. Lzh-5 1 0 species 2049935 1446792 species 3982168 Bacillus sp. Pc3 1 0 species 0 Bacillus sp. (in: Bacteria) 1 4233615 1409 species 6128401 Bacillus coagulans 1 0 1398 species 3637729 0 Bacillus xiamenensis 1 1178537 632773 species 3582268 0 Bacillus beveridgei 1 1792192 species group 0 1 7610438 species 0 1 Bacillus altitudinis 7610438 293387 412384 species 0 Bacillus aryabhattai 1 5254250 86661 93294124 0 10 species group species 1 Bacillus anthracis 0 19552719 1392 658666 5873592 1 Bacillus bombysepticus 0 species 0 Bacillus sp. ABP14 1 5152566 species 1892404 5230501 1 Bacillus sp. HBCD-sjtu 0 species 2053832 1396 13824162 1 Bacillus cereus 0 species 580165 species Bacillus cytotoxicus 1 0 4094159 species 17514250 Bacillus mycoides 1 0 1405 species 0 1 Bacillus sp. FDAARGOS_235 5608392 1839798 1 Bacillus thuringiensis 0 11418364 species 1428 species 5025419 0 1 Bacillus toyonensis 155322 1329200 genus 0 2 8286126 species 0 Fictibacillus arsenicus 1 4055461 255247 1221500 species 1 Fictibacillus phosphorivorans 0 4230665 genus 36581605 0 5 Lysinibacillus 1 400634 0 4662822 0 1 Lysinibacillus varians species 1145276 1 Lysinibacillus sphaericus 0 22490079 species 1421 species 4843789 0 Lysinibacillus fusiformis 1 28031 no rank 4584915 0 1 2636778 2072025 species 4584915 0 1 Lysinibacillus sp. YS11 459532 genus 0 1 3577082 3577082 0 1 Terribacillus aidingensis species 586416 0 351195 1 0 2 Salimicrobium 2776927 genus 2776927 0 1 Salimicrobium jeotgali species 1230341 0 1906945 1 Parageobacillus 2 0 7938085 genus species 0 1 Parageobacillus thermoglucosidasius 7938085 1426 1055323 genus 4089457 0 1 33936 species 4089457 0 1 Aeribacillus pallidus 3745575 0 1 genus 182709 182710 species 3745575 0 Oceanobacillus iheyensis 1 genus Geobacillus 15 0 56001371 129337 1 0 1422 3571659 0 Geobacillus stearothermophilus 1 species 1921421 0 Geobacillus genomosp. 3 1 3486308 species 33940 5434889 0 Geobacillus thermodenitrificans 1 species no rank 21996539 6 0 2642459 species 3667901 0 1 Geobacillus sp. Y412MC61 544556 species Geobacillus sp. GHH01 1 0 3583134 1233873 581103 3911947 1 Geobacillus sp. Y4.1MC1 0 species 691437 species 3650813 0 1 Geobacillus sp. C56-T3 3673940 1 Geobacillus sp. Y412MC52 0 species 550542 species 3508804 0 1 Geobacillus sp. WCH70 471223 0 Geobacillus subterraneus 1 3474426 species 129338 1505648 18037550 4 0 species group species 3742258 Geobacillus thermocatenulatus 1 0 33938 1462 species 3592666 Geobacillus kaustophilus 1 0 species Geobacillus thermoleovorans 1 0 7203115 33941 3499511 0 1 Geobacillus lituanicus species 169283 150247 1 0 genus 6 Anoxybacillus 0 17894969 Anoxybacillus gonensis 1 0 2803668 species 198467 2639704 no rank 7688536 0 2 3869056 1 Anoxybacillus sp. B7M1 0 species 1490057 1 Anoxybacillus sp. B2M1 0 3819480 species 1490052 294699 1 Anoxybacillus amylolyticus 0 3158269 species species 4244496 0 Anoxybacillus flavithermus 1 33934 2569486 1 0 genus 29331 2569486 Amphibacillus xylanus 1 0 species 1449 genus 8314463 0 2 45667 1570 species 1 Halobacillus halophilus 0 4171766 4142697 0 Halobacillus mangrovi 1 species 402384 genus 7 Virgibacillus 0 25181030 84406 1 0 4337422 1 Virgibacillus necropolis 0 species 163877 2017483 1 Virgibacillus phasianinus 0 4071214 species no rank 8591115 2 0 2620237 1911587 1 Virgibacillus sp. 6R 0 4749385 species 403957 Virgibacillus sp. SK37 1 0 3841730 species 0 1 Virgibacillus pantothenticus 4263520 species 1473 3917759 0 1 Virgibacillus halodenitrificans species 1482 Planococcaceae 23 0 85404787 family 0 186818 1 1 0 2964527 genus 1649 2964527 1 0 no rank 2644826 1750719 2964527 1 Kurthia sp. 11kri321 0 species 0 12 Planococcus 41871973 genus 0 1372 1 1302659 3330075 0 1 Planococcus sp. L10.15 species 192421 species 7430454 0 Planococcus maritimus 1 3505011 0 Planococcus rifietoensis 1 species 200991 species 1 Planococcus donghaensis 0 3319331 414778 species 0 1 Planococcus antarcticus 3804624 161360 1374 species 3485580 0 Planococcus kocurii 1 Planococcus plakortidis 1 0 3261818 species 1038856 2662419 6814295 0 2 no rank 1526927 0 1 Planococcus sp. PAMC 21323 3199864 species 2058136 1 Planococcus sp. MB-3u-03 0 3614431 species species Planococcus faecalis 1 0 3495892 1598147 0 1 Planococcus halocryophilus 3424893 species 1215089 157226 genus 4119509 1 0 1508404 species 4119509 0 1 Jeotgalibacillus malaysiensis 648802 3420739 1 0 genus 241244 species 3420739 1 Rummeliibacillus stabekisii 0 2 0 8271138 genus 648800 species 3987727 1 Solibacillus silvestris 0 76853 2637870 4283411 0 1 no rank 2048654 species 0 Solibacillus sp. R5-41 1 4283411 24756901 0 Sporosarcina 5 genus 0 1 1569 1476 species 1 Sporosarcina psychrophila 0 4674191 6571440 2 0 no rank 2647733 3235441 0 Sporosarcina sp. P33 1 species 1930764 3335999 Sporosarcina sp. P37 1 0 species 1930546 1571 13511270 0 Sporosarcina ureae 1 species 186821 3592487 0 1 family 663587 1 0 3592487 no rank 85683 species 1 [Bacillus] selenitireducens 0 3592487 class Limnochordia 5 0 3817036 1676648 1 0 Limnochordales 4 0 3817036 order 0 1676649 1 0 1676650 1 Limnochordaceae 3 0 3817036 family genus 0 Limnochorda 2 3817036 1676651 1 0 1555112 3817036 1 Limnochorda pilosa 0 species 0 186801 1 Clostridia 201 0 576974865 class 9 0 12619376 order 53433 1 972 0 family 7500525 0 Halanaerobiaceae 5 0 2 4922379 genus 2330 656519 2613117 1 Halanaerobium hydrogeniformans 0 species 2331 2309262 1 Halanaerobium praevalens 0 species 2578146 0 Halothermothrix 2 genus 0 1 32636 31909 2578146 0 1 Halothermothrix orenii species 0 Halobacteroidaceae 4 5118851 family 0 53434 1 Halobacteroides 2 0 2649255 genus 0 42417 1 0 1 Halobacteroides halobius 2649255 species 42422 0 1 2469596 genus 28186 28187 0 Acetohalobium arabaticum 1 2469596 species 0 3 3191453 order 485256 Natranaerobiaceae 3 0 3191453 family 0 485255 1 genus 0 Natranaerobius 2 3191453 375928 1 0 species 3191453 Natranaerobius thermophilus 1 0 375929 1 186802 0 order 484573592 0 148 Clostridiales family 27565704 0 Ruminococcaceae 12 1 541000 0 0 1263 1 Ruminococcus 3 0 7450587 genus 4482087 Ruminococcus albus 1 0 species 1264 2968500 0 1 Ruminococcus bicirculans species 1160721 1 253238 0 genus 6018091 2 Ethanoligenens 0 253239 0 1 Ethanoligenens harbinense 6018091 species 0 1 946234 3818478 Flavonifractor 2 0 genus 292800 species 0 Flavonifractor plautii 1 3818478 552397 no rank 0 2 4299572 species 2229578 0 1 [Clostridium] cellulosi 29343 2305133 no rank 0 1 2069994 1572656 species 2069994 Ruminococcaceae bacterium CPB6 1 0 0 1 216851 5978976 2 Faecalibacterium 0 genus 853 Faecalibacterium prausnitzii 1 0 5978976 species family Clostridiaceae 40 0 195110932 31979 1 0 0 1 1485 173697337 Clostridium 30 0 genus 1548 species 5749410 0 1 Clostridium scatologenes species 4630065 0 Clostridium ljungdahlii 1 1538 species 4136895 0 Clostridium acetobutylicum 1 1488 36745 species 6442919 1 Clostridium saccharoperbutylacetonicum 0 9101773 1 Clostridium perfringens 0 species 1502 217159 species 1 Clostridium carboxidivorans 0 5752782 1 Clostridium kluyveri 0 4164012 species 1534 species 18483337 0 Clostridium butyricum 1 1492 1513 species 2869591 1 Clostridium tetani 0 0 1 Clostridium pasteurianum 7484269 species 1501 species 0 1 Clostridium estertheticum 4785613 238834 0 1 Clostridium cellulovorans 5262222 species 1493 7449484 0 2 no rank 2614128 755731 4613747 1 Clostridium sp. BNL1100 0 species 1042156 2835737 0 Clostridium sp. SY8519 1 species Clostridium bornimense 1 0 3617025 species 1216932 84023 0 1 Clostridium autoethanogenum 8704651 species 29341 species 4803058 0 1 Clostridium argentinense 1497 0 1 Clostridium formicaceticum 9173483 species 1 Clostridium novyi 0 2547720 species 1542 1494 species 1 Clostridium cochlearium 0 2435419 46867 species 4324842 Clostridium chauvoei 1 0 169679 12691757 1 Clostridium saccharobutylicum 0 species 1519 species Clostridium tyrobutyricum 1 0 3134437 8983007 0 1 Clostridium botulinum species 1491 species 0 1 Clostridium aceticum 4207037 84022 394958 0 1 Clostridium taeniosporum 3503506 species Clostridium sporogenes 1 0 8284974 species 1509 species 3275173 0 Clostridium baratii 1 1561 1520 7698876 1 Clostridium beijerinckii 0 species 0 390805 1 Geosporobacter 2 0 5817221 genus species 5817221 0 Geosporobacter ferrireducens 1 1424294 114627 8053124 2 0 genus 461876 3123558 0 1 Alkaliphilus oremlandii species 208226 4929566 1 Alkaliphilus metalliredigens 0 species 2 Mordavella 0 2769591 genus 0 1981033 1 no rank 2769591 0 1 2622214 species 2769591 1 Mordavella sp. Marseille-P3756 0 2086584 genus 3 0 4773659 49082 2638829 no rank 0 3 4773659 49118 species 1603201 1 Candidatus Arthromitus sp. SFB-mouse 0 species 1 Candidatus Arthromitus sp. SFB-rat-Yit 0 1515556 1041504 Candidatus Arthromitus sp. SFB-mouse-NL 1 0 1654902 species 1508644 3376475 2 0 no rank 186813 genus 3376475 0 2 Intestinimonas 1 1392389 0 1297617 0 1 Intestinimonas butyriciproducens 3376475 species 0 1 186803 70211971 19 Lachnospiraceae 0 family genus 1 0 3515670 2569097 39488 3515670 1 [Eubacterium] hallii 0 species 841 3592125 0 1 genus 0 Roseburia hominis 1 3592125 species 301301 207244 3172613 0 1 genus 649756 Anaerostipes hadrus 1 0 3172613 species 0 1 3120417 genus 2039240 species 1 Anaerotignum propionicum 0 3120417 28446 genus 4714237 1 0 698776 species 1 Cellulosilyticum lentocellum 0 4714237 29360 genus 26850594 Lachnoclostridium 6 0 1 1506553 0 66219 4847594 0 1 Lachnoclostridium phytofermentans species species 6614036 0 [Clostridium] bolteae 1 208479 7225339 0 1 no rank 2608895 1834196 7225339 0 1 Lachnoclostridium sp. YL32 species 84030 species 4662871 0 [Clostridium] saccharolyticum 1 1871021 1 Lachnoclostridium phocaeense 0 3500754 species genus 7791200 2 0 830 0 1 Butyrivibrio hungatei 3386314 species 185008 43305 species 0 Butyrivibrio proteoclasticus 1 4404886 8194695 2 0 genus 572511 2648079 1 0 5128746 no rank 1796616 5128746 1 Blautia sp. YL58 0 species 1322 0 Blautia hansenii 1 3065949 species 1663717 2609352 1 0 genus 1679721 Herbinix luporum 1 0 2609352 species 186928 0 2 6651068 no rank 712991 species 3201383 0 Lachnospiraceae bacterium oral taxon 500 1 39491 0 [Eubacterium] rectale 1 3449685 species 1 186804 0 family 39945965 0 Peptostreptococcaceae 10 44259 1 0 genus Filifactor 2 0 1931012 143361 0 1 Filifactor alocis 1931012 species genus Peptoclostridium 2 0 3055036 1481960 1 0 1731 species 3055036 1 Peptoclostridium acidaminophilum 0 2715461 2 Acetoanaerobium 0 genus 0 1 186831 species Acetoanaerobium sticklandii 1 0 2715461 1511 1849828 genus 3584812 0 1 0 Paeniclostridium sordellii 1 3584812 species 1505 200630 1646831 1 0 no rank species Peptostreptococcaceae bacterium oral taxon 929 1 0 1646831 2081703 1870884 27012813 1 0 genus 1496 species 27012813 1 Clostridioides difficile 0 family 2560186 2 0 990719 0 Christensenella 2 2560186 genus 0 990721 1 species 0 1 Christensenella massiliensis 2560186 1805714 0 186807 1 0 Peptococcaceae 28 77249657 family genus 3766545 0 Dehalobacterium 2 1 51514 0 51515 1 Dehalobacterium formicoaceticum 0 3766545 species 2282742 genus 4545624 0 1 4545624 1 Desulfotomaculum acetoxidans 0 species 58138 genus Dehalobacter 4 0 9105337 56112 1 0 2635733 no rank 6162001 0 2 1131462 species 3092048 1 Dehalobacter sp. CF 0 species 3069953 0 1 Dehalobacter sp. DCA 1147129 species Dehalobacter restrictus 1 0 2943336 55583 1 36853 0 genus 16625609 5 Desulfitobacterium 0 species 3624449 Desulfitobacterium dichloroeliminans 1 0 233055 1 Desulfitobacterium hafniense 0 5503334 species 49338 36854 0 1 Desulfitobacterium dehalogenans 4321753 species 0 Desulfitobacterium metallireducens 1 3176073 species 142877 79206 3 0 15727829 genus 1563 species 5863081 0 1 Desulfosporosinus orientis 79209 4873567 0 Desulfosporosinus meridiei 1 species 885581 4991181 1 Desulfosporosinus acidiphilus 0 species 2282740 4855529 0 1 genus 102134 species 4855529 1 Desulfotomaculum gibsoniae 0 1 51196 0 genus 3406739 0 Syntrophobotulus 2 1 Syntrophobotulus glycolicus 0 3406739 species 51197 genus 0 Candidatus Desulforudis 2 2349476 471826 1 0 471827 species 2349476 0 Candidatus Desulforudis audaxviator 1 3157416 Thermincola 2 0 genus 0 1 278993 species 0 1 Thermincola potens 3157416 863643 genus 13709553 Desulfotomaculum 5 0 1 1562 0 species 1 Desulfotomaculum nigrificans 0 2892255 1565 1564 species 0 1 Desulfotomaculum ruminis 3969014 species 3240180 Desulfotomaculum ferrireducens 1 0 1833852 59610 species 0 1 Desulfotomaculum reducens 3608104 0 186806 1 Eubacteriaceae 5 0 13321104 family 33951 genus 4044777 1 0 33952 0 Acetobacterium woodii 1 4044777 species 9276327 Eubacterium 3 0 genus 0 1 1730 1736 species 1 Eubacterium limosum 0 6444938 [Eubacterium] eligens 1 0 2831389 species 39485 Syntrophomonadaceae 5 0 5341754 family 0 68298 1 Syntrophothermus 2 0 2405559 genus 0 129001 1 species 2405559 0 Syntrophothermus lipocalidus 1 86170 2936195 Syntrophomonas 2 0 genus 0 1 862 species 2936195 0 Syntrophomonas wolfei 1 863 family 0 2 4470622 216572 0 Oscillibacter 2 4470622 genus 0 459786 1 1 Oscillibacter valericigenes 0 4470622 species 351091 0 1 543349 3566135 3 Symbiobacteriaceae 0 family 2733 1 0 genus 0 2 Symbiobacterium 3566135 2734 3566135 1 Symbiobacterium thermophilum 0 species 32377773 10 0 family 2304686 236752 genus 1 0 1785891 236753 0 Fastidiosipila sanguinis 1 1785891 species 2305130 no rank 1 0 3802844 0 1 Ruminiclostridium sp. KB18 3802844 species 1834198 2304692 genus 3 0 12136563 species 0 [Clostridium] clariflavum 1 4897678 288965 1677857 species 3604547 1 Herbivorax saccincola 0 species 1 Ruminiclostridium thermocellum 0 3634338 1515 1 0 4042789 genus 2304691 species 4042789 [Clostridium] stercorarium 1 0 1510 1 1508657 0 genus 4068724 0 2 Ruminiclostridium species 0 [Clostridium] cellulolyticum 1 4068724 1521 2304693 genus 1 0 4731216 84032 species 4731216 0 [Clostridium] thermosuccinogenes 1 1809746 1 0 genus 1637257 species 1 Mageeibacillus indolicus 0 1809746 884684 1 31984 0 family 3075407 3 Heliobacteriaceae 0 0 1 2697 3075407 Heliobacterium 2 0 genus 35701 3075407 1 Heliobacterium modesticaldum 0 species no rank 6399907 0 6 538999 543314 family 0 3 3555211 species 0 1 [Eubacterium] sulci 1739380 143393 0 1 86331 1815831 0 Mogibacterium 2 genus Mogibacterium diversum 1 0 1815831 species 114527 0 1 539000 2844696 Clostridiales Family XVII. Incertae Sedis 3 0 family genus 0 Thermaerobacter 2 2844696 73918 1 0 73919 species 2844696 0 Thermaerobacter marianensis 1 68295 1 0 order 0 40 Thermoanaerobacterales 76590444 3135972 0 2 Thermoanaerobacterales Family IV. Incertae Sedis family 0 1 543372 genus 1 0 3135972 252965 1 Mahella australiensis 0 3135972 species 252966 227387 family 0 2 1898865 genus 1898865 0 Thermodesulfobium 2 1 227388 0 species 1898865 0 Thermodesulfobium narugense 1 184064 186814 1 0 family 0 Thermoanaerobacteraceae 20 41927734 0 129957 1 0 Carboxydothermus 2 2401520 genus 129958 species 2401520 1 Carboxydothermus hydrogenoformans 0 42857 8815141 4 0 no rank 44260 1 0 genus 0 Moorella 2 6658074 1525 species 0 1 Moorella thermoacetica 6658074 0 1 42837 2157067 0 2 Ammonifex genus 42838 species Ammonifex degensii 1 0 2157067 249529 0 1 2689445 genus Caldanaerobacter subterraneus 1 0 2689445 species 911092 genus 0 9 Thermoanaerobacter 19561452 1754 1 0 species 0 1 Thermoanaerobacter kivui 2397824 2325 583357 species 1 Thermoanaerobacter mathranii 0 2306092 2636821 4913779 2 0 no rank 573062 Thermoanaerobacter sp. X513 1 0 2456520 species 2457259 Thermoanaerobacter sp. X514 1 0 species 399726 2344824 1 Thermoanaerobacter brockii 0 species 29323 species 2785056 Thermoanaerobacter wiegelii 1 0 46354 species Thermoanaerobacter pseudethanolicus 1 0 2362816 496866 2451061 Thermoanaerobacter italicus 1 0 species 108150 genus 2939057 0 Thermacetogenium 2 1 140458 0 85874 species Thermacetogenium phaeum 1 0 2939057 genus 1 0 5521119 499228 499229 5521119 0 1 Tepidanaerobacter acetatoxydans species 1 543371 0 family 29627873 Thermoanaerobacterales Family III. Incertae Sedis 15 0 genus 21954896 0 Caldicellulosiruptor 9 1 44000 0 species 2970275 0 1 Caldicellulosiruptor saccharolyticus 44001 species 2674809 0 Caldicellulosiruptor lactoaceticus 1 52766 413889 species 1 Caldicellulosiruptor kronotskyensis 0 2843785 413888 1 Caldicellulosiruptor hydrothermalis 0 2770676 species 52765 species 2802443 0 Caldicellulosiruptor kristjanssonii 1 species 0 Caldicellulosiruptor owensensis 1 2428903 55205 2532343 1 Caldicellulosiruptor obsidiansis 0 species 717609 31899 species 0 1 Caldicellulosiruptor bescii 2931662 0 2 Thermosediminibacter 2280035 genus 0 291988 1 2280035 0 1 Thermosediminibacter oceani species 291990 1 28895 0 genus 5392942 Thermoanaerobacterium 3 0 1 Thermoanaerobacterium xylanolyticum 0 2534358 species 29329 2858584 1 Thermoanaerobacterium thermosaccharolyticum 0 species 1517 phylum 5231762 5 0 67819 1 1663419 0 class 5231762 Fimbriimonadia 5 0 order 5231762 Fimbriimonadales 4 0 1 1663425 0 1663426 1 0 family Fimbriimonadaceae 3 0 5231762 2 Fimbriimonas 0 5231762 genus 0 1005038 1 1005039 species 5231762 0 1 Fimbriimonas ginsengisoli 32066 0 21 63524016 phylum 1 203490 0 class 63524016 0 Fusobacteriia 21 1 203491 0 order 63524016 0 Fusobacteriales 20 46769908 11 0 family 203492 genus 0 Fusobacterium 9 43637594 848 1 0 851 species 3173553 0 1 Fusobacterium nucleatum 1583098 1 Fusobacterium hwasookii 0 2496436 species Fusobacterium varium 1 0 3734649 species 856 0 1 Fusobacterium ulcerans 3537675 species 861 0 1 Fusobacterium periodonticum 24013616 species 860 859 species 2286018 0 Fusobacterium necrophorum 1 species 0 Fusobacterium gonidiaformans 1 1678881 849 850 species 0 Fusobacterium mortiferum 1 2716766 167639 1 0 genus Ilyobacter 2 0 3132314 3132314 1 Ilyobacter polytropus 0 species 167642 family 16754108 8 0 1129771 34104 genus 1679604 0 1 1679604 Streptobacillus moniliformis 1 0 species 34105 1330224 0 1 genus 168808 1330224 0 1 Sneathia amnii species 187101 1 32067 0 genus 9257630 Leptotrichia 5 0 2633022 no rank 0 3 6792020 2444904 1 Leptotrichia sp. oral taxon 212 0 species 712357 2152181 0 1 Leptotrichia sp. oral taxon 498 species 712368 Leptotrichia sp. oral taxon 847 1 0 2194935 species 1785996 40542 species 1 Leptotrichia buccalis 0 2465610 genus 4486650 0 1 32068 4486650 0 1 Sebaldella termitidis species 826 63304217 40 0 phylum 200918 Thermotogae 40 0 63304217 class 0 188708 1 2419 1 0 order Thermotogales 28 0 47099349 0 Fervidobacteriaceae 10 13780866 family 0 1643950 1 genus 0 Thermosipho 5 7480432 2420 1 0 1915291 1 Thermosipho melanesiensis 0 species 46541 2676525 3548484 2 0 no rank 1766633 1 Thermosipho sp. 1063 0 species 1462747 species Thermosipho sp. 1070 1 0 1781851 1437364 2421 species 2016657 0 1 Thermosipho africanus genus 6300434 0 4 Fervidobacterium 1 2422 0 species 2237377 1 Fervidobacterium islandicum 0 2423 species 1948941 1 Fervidobacterium nodosum 0 2424 93466 1 Fervidobacterium pennivorans 0 2114116 species 0 188709 1 0 Thermotogaceae 17 33318483 family 0 1 2335 22642757 11 Thermotoga 0 genus 2336 species 5599391 Thermotoga maritima 1 0 1508420 species 2187612 0 Thermotoga profunda 1 2337 species 0 1 Thermotoga neapolitana 1884562 0 4 7322946 no rank 2631113 1 Thermotoga sp. 2812B 0 1843731 species 1157948 0 1 Thermotoga sp. RQ7 1851618 species 126738 126740 1877693 0 1 Thermotoga sp. RQ2 species 1157947 1749904 0 Thermotoga sp. Cell2 1 species 2014912 0 Thermotoga caldifontis 1 species 1508419 93930 species 1809823 Thermotoga naphthophila 1 0 1823511 Thermotoga petrophila 1 0 species 93929 1643951 1 0 genus 0 Pseudothermotoga 5 10675726 2135342 Pseudothermotoga lettingae 1 0 species 177758 species Pseudothermotoga thermarum 1 0 2039943 119394 38322 species 2169860 0 Pseudothermotoga elfii 1 57487 species 0 Pseudothermotoga hypogea 1 4330581 0 1643946 1 0 5 Kosmotogales 7447249 order 7447249 4 0 family 1643948 1 651456 0 genus 4471296 0 3 Kosmotoga 651457 species 0 Kosmotoga olearia 1 2302126 1330330 Kosmotoga pacifica 1 0 2169170 species 1184396 2975953 0 1 genus 2975953 1 Mesotoga prima 0 species 1184387 0 Petrotogales 6 8757619 order 0 1643947 1 1643949 8757619 0 5 family 1511648 0 1 2053097 genus 1006576 species 2053097 Defluviitoga tunisiensis 1 0 160798 1 0 genus 0 Marinitoga 3 4534974 2640159 no rank 2290181 1 0 species 0 1 Marinitoga sp. 1137 2290181 1545835 149715 2244793 Marinitoga piezophila 1 0 species 2169548 1 0 genus 28236 69499 1 Petrotoga mobilis 0 2169548 species 200783 phylum 26 0 26450679 0 187857 1 Aquificae 26 0 26450679 class 0 Desulfurobacteriales 5 3301494 order 0 1485951 1 3301494 0 Desulfurobacteriaceae 4 family 0 1 558314 0 1 64159 1541968 Desulfurobacterium 2 0 genus 64160 1541968 1 Desulfurobacterium thermolithotrophum 0 species genus 0 1 1759526 171868 228745 species 1759526 0 Thermovibrio ammonificans 1 23149185 0 Aquificales 20 order 0 1 32069 64898 family 11 0 15869230 1 75905 0 genus 3021614 0 3 Thermocrinis 0 Thermocrinis ruber 1 1521037 species 75906 136094 0 Thermocrinis albus 1 1500577 species 0 1 3486067 genus 939 940 species 3486067 0 Hydrogenobacter thermophilus 1 1590791 0 1 genus 2713 1590791 Aquifex aeolicus 1 0 species 63363 7770758 0 6 Hydrogenobaculum genus 0 1 168657 7770758 5 0 no rank 2622382 species 0 Hydrogenobaculum sp. Y04AAS1 1 1559514 380749 547145 species 1 Hydrogenobaculum sp. SHO 0 1552607 547146 species 1552931 1 Hydrogenobaculum sp. SN 0 species 0 1 Hydrogenobaculum sp. HO 1552931 547144 547143 species Hydrogenobaculum sp. 3684 1 0 1552775 2 0 1816670 no rank 90150 412592 1 0 genus 2 Thermosulfidibacter 0 1816670 1816670 0 Thermosulfidibacter takaii 1 species 412593 224027 1 0 family 0 6 Hydrogenothermaceae 5463285 3479319 0 Sulfurihydrogenibium 3 genus 0 1 212790 species 1640877 0 Sulfurihydrogenibium azorense 1 309806 2619248 no rank 1 0 1838442 436114 1838442 Sulfurihydrogenibium sp. YO3AOP1 1 0 species 1 182899 0 genus 1983966 0 Persephonella 2 species 1983966 0 Persephonella marina 1 309805 8348658582 0 Proteobacteria 1982 phylum 0 1 1224 1236 1 0 class 0 Gammaproteobacteria 856 4001679807 order 114007196 Aeromonadales 29 0 1 135624 0 family 114007196 0 Aeromonadaceae 28 1 84642 0 0 642 1 0 18 Aeromonas 96422682 genus species 11743161 0 Aeromonas veronii 1 654 196024 species 0 Aeromonas dhakensis 1 4868053 8 0 39824702 no rank 257493 1636608 5033911 Aeromonas sp. ASNIH3 1 0 species 1636607 species 1 Aeromonas sp. ASNIH2 0 4864532 1 Aeromonas sp. CU5 0 4615599 species 2033033 1636606 0 Aeromonas sp. ASNIH1 1 5079402 species 1920107 Aeromonas sp. ASNIH7 1 0 4868657 species 2033032 0 1 Aeromonas sp. CA23 5099209 species 0 1 Aeromonas sp. ASNIH5 4783196 species 1758179 species 5480196 Aeromonas sp. ASNIH4 1 0 1636609 652 species 4400034 0 Aeromonas schubertii 1 species 0 1 Aeromonas caviae 4518310 648 0 Aeromonas media 1 4788430 species 651 645 species 1 Aeromonas salmonicida 0 8702641 species 0 1 Aeromonas aquatica 4783504 558964 948519 species 0 Aeromonas rivipollensis 1 4508901 0 Aeromonas hydrophila 1 8284946 species 644 0 43947 1 2 Tolumonas 0 3471292 genus 43948 0 1 Tolumonas auensis 3471292 species genus Oceanimonas 2 0 3527244 129577 1 0 2636315 no rank 3527244 0 1 511062 species 0 1 Oceanimonas sp. GK1 3527244 0 1 347533 4174222 0 2 Zobellella genus species 0 1 Zobellella denitrificans 4174222 347534 Oceanisphaera 3 0 6411756 genus 0 225143 1 1416627 species 1 Oceanisphaera profunda 0 3508860 1903694 species 0 Oceanisphaera sp. AMac2203 1 2902896 1 135625 0 order 75923268 Pasteurellales 29 0 75923268 28 Pasteurellaceae 0 family 0 1 712 0 476528 1 0 Bibersteinia 2 2411529 genus 47735 2411529 0 1 Bibersteinia trehalosi species 214906 6471723 0 1 genus 6471723 0 1 Histophilus somni species 731 697331 genus 2314078 1 0 157673 0 1 [Mannheimia] succiniciproducens 2314078 species 0 1 713 9552877 5 Actinobacillus 0 genus 2319663 0 1 Actinobacillus succinogenes species 67854 718 species 2431533 Actinobacillus equuli 1 0 1 Actinobacillus pleuropneumoniae 0 2299903 species 715 0 1 Actinobacillus suis 2501778 species 716 724 genus 0 5 21485934 species 0 1 [Haemophilus] ducreyi 10971947 730 0 1 Haemophilus influenzae 4440041 species 727 249188 1 Haemophilus pittmaniae 0 2181355 species no rank 1805716 1 0 2609962 1 Haemophilus sp. oral taxon 036 0 1805716 species 712310 2086875 1 Haemophilus parainfluenzae 0 species 729 1 75984 0 genus 8753409 Mannheimia 4 0 species 2201818 Mannheimia varigena 1 0 85404 1 0 2393449 no rank 2645054 species Mannheimia sp. USDA-ARS-USMARC-1261 1 0 2393449 1432056 4158142 Mannheimia haemolytica 1 0 species 75985 2094023 genus 1 0 5699427 738 5699427 0 1 Glaesserella parasuis species genus 9285554 3 Pasteurella 0 1 745 0 0 Pasteurella dagmatis 1 2287213 species 754 6998341 0 1 Pasteurella multocida species 747 1 155493 0 genus 2694139 0 2 Gallibacterium Gallibacterium anatis 1 0 2694139 species 750 0 1 416916 7254598 0 Aggregatibacter 3 genus 3734239 1 Aggregatibacter actinomycetemcomitans 0 species 714 732 1 Aggregatibacter aphrophilus 0 3520359 species Orbales 3 0 5831763 order 0 1240482 1 5831763 0 2 family 1240483 genus 3139412 1 0 1193503 1196095 species 0 Gilliamella apicola 1 3139412 1335631 0 1 2692351 genus 0 1 Frischella perrara 2692351 species 1267021 69540071 0 Cellvibrionales 27 order 0 1 1706369 1706371 1 0 family 0 Cellvibrionaceae 13 36203685 0 447467 1 0 2 Simiduia 4300227 genus 1 Simiduia agarivorans 0 4300227 species 447471 2 Saccharophagus 0 5057531 genus 0 316625 1 1 Saccharophagus degradans 0 5057531 species 86304 genus 7113812 0 2 Agarilytica 1 2036021 0 1737490 species 0 1 Agarilytica rhodophyticola 7113812 10 1 0 genus Cellvibrio 4 0 14538951 species 4576573 0 Cellvibrio japonicus 1 155077 0 2 9962378 no rank 2624793 Cellvibrio sp. PSBB023 1 0 4705304 species 1945512 1987723 species 5257074 0 Cellvibrio sp. PSBB006 1 5193164 Teredinibacter 2 0 genus 0 1 2425 2426 0 Teredinibacter turnerae 1 5193164 species family 12058347 Microbulbiferaceae 5 0 1 1706373 0 0 4 Microbulbifer 12058347 genus 0 48073 1 252514 3938396 0 Microbulbifer thermotolerans 1 species 1769779 3864326 Microbulbifer aggregans 1 0 species 260552 species 4255625 0 1 Microbulbifer agarilyticus 0 1706372 1 Halieaceae 4 0 9119932 family 1 1217416 0 genus 9119932 3 Halioglobus 0 930806 1 Halioglobus pacificus 0 5003575 species 4116357 0 1 Halioglobus japonicus species 930805 family Spongiibacteraceae 4 0 12158107 1706375 1 0 4204359 1 0 genus 1434050 1470434 species 4204359 Zhongshania aliphaticivorans 1 0 1084558 genus 4472079 1 0 4472079 1 Oceanicoccus sagamiensis 0 species 716816 630749 genus 0 1 3481669 2631504 3481669 1 0 no rank 1620392 species 0 1 Spongiibacter sp. IMCC21906 3481669 order 3467246 0 Nevskiales 4 1 1775403 0 0 1 Sinobacteraceae 0 family 568386 3467246 2 0 family 2689614 469322 1 0 genus Steroidobacter 2 0 3467246 465721 species 3467246 0 1 Steroidobacter denitrificans 135623 1 0 order 43 Vibrionales 0 351683348 42 Vibrionaceae 0 351683348 family 0 641 1 genus 2593992 0 1 2042066 1755811 2593992 0 Paraphotobacterium marinum 1 species 662 1 0 genus Vibrio 30 0 314794840 0 Vibrio gazogenes 1 4786552 species 687 5221926 1 Vibrio tritonius 0 species 1435069 species 4492180 1 Vibrio breoganii 0 553239 species 12622139 0 Vibrio cholerae 1 666 190893 0 1 Vibrio coralliilyticus 23103305 species 0 1 Vibrio vulnificus 14482894 species 672 52443 species 1 Vibrio tapetis 0 5725871 2025808 species 0 Vibrio qinghaiensis 1 4017713 212663 0 1 Vibrio tasmaniensis 4974818 species species 0 Vibrio furnissii 1 4916408 29494 species Vibrio anguillarum 1 0 18289476 55601 species group 0 1 5540337 1891919 species Vibrio tubiashii 1 0 5540337 29498 717610 151911891 0 10 species group species 1 Vibrio parahaemolyticus 0 16444666 670 691 Vibrio natriegens 1 0 13279594 species 669 24177087 Vibrio harveyi 1 0 species 0 1 Vibrio alginolyticus 37918770 species 663 680 species 15852206 1 Vibrio campbellii 0 Vibrio jasicida 1 0 5989523 species 766224 species 5277859 Vibrio rotiferianus 1 0 190895 0 2 20820601 species subgroup 2315253 150340 Vibrio antiquarius 1 0 5089025 species species 15731576 Vibrio diabolicus 1 0 50719 696485 species 0 1 Vibrio owensii 12151585 6322155 1 Vibrio nigripulchritudo 0 species 28173 45658 9728927 0 1 Vibrio scophthalmi species species 0 Vibrio mimicus 1 8922712 674 2614977 9576509 0 2 no rank 4123863 Vibrio sp. 2521-89 1 0 species 2014742 Vibrio sp. EJY3 1 0 5452646 species 1116375 676 1 Vibrio fluvialis 0 14546945 species 1534743 0 Vibrio hyugaensis 1 5612082 species 1 657 0 genus 16731573 0 Photobacterium 4 74109 species 0 Photobacterium profundum 1 6403280 4418880 1 Photobacterium damselae 0 species 38293 species 1 Photobacterium gaetbulicola 0 5909413 1295392 1 511678 0 genus 13564504 Aliivibrio 4 0 40269 0 Aliivibrio salmonicida 1 4655660 species 668 0 Aliivibrio fischeri 1 4273718 species 80852 4635126 Aliivibrio wodanis 1 0 species genus 2 Grimontia 0 3998439 246861 1 0 673 species 0 1 Grimontia hollisae 3998439 order 0 Methylococcales 13 33456518 135618 1 0 1 403 0 family 33456518 12 Methylococcaceae 0 2 Methylococcus 0 3304561 genus 0 413 1 species 3304561 Methylococcus capsulatus 1 0 414 4923400 2 Methylovulum 0 genus 0 1 762296 species 1 Methylovulum psychrotolerans 0 4923400 1704499 20431846 Methylomonas 5 0 genus 0 1 416 species 1 Methylomonas methanica 0 5051681 421 species 5080660 Methylomonas koyamae 1 0 702114 Methylomonas denitrificans 1 0 5172098 species 1538553 0 1 5127407 no rank 2608980 1727196 species 5127407 Methylomonas sp. DH-1 1 0 1 39773 0 genus 4796711 0 2 Methylomicrobium 271065 species 4796711 Methylomicrobium alcaliphilum 1 0 order 240 Enterobacterales 0 1298864794 91347 1 0 45314355 0 Hafniaceae 14 family 0 1 1903412 1 635 0 genus 28788824 0 8 Edwardsiella 636 Edwardsiella tarda 1 0 4957945 species 4329652 0 Edwardsiella anguillarum 1 species 1821960 0 1 Edwardsiella hoshinae 3811650 species 93378 2676541 8076204 2 0 no rank 1650654 0 Edwardsiella sp. LADL05-105 1 4142037 species species 0 Edwardsiella sp. EA181011 1 3934167 1578828 3721470 Edwardsiella ictaluri 1 0 species 67780 0 Edwardsiella piscicida 1 3891903 species 1263550 genus 11513735 Hafnia 3 0 1 568 0 Hafnia alvei 1 0 6928437 species 569 2621980 no rank 4585298 0 1 species 1 Hafnia sp. CBA7124 0 4585298 1848580 5011796 Obesumbacterium 2 0 genus 0 1 82982 5011796 0 1 Obesumbacterium proteus species 82983 0 2 7376338 no rank 451511 0 1 702 7376338 Plesiomonas 2 0 genus 703 species 7376338 0 1 Plesiomonas shigelloides family 86425541 0 20 Pectobacteriaceae 1 1903410 0 0 1 204037 25566669 0 6 Dickeya genus 4696936 Dickeya zeae 1 0 species 204042 species 1 Dickeya dianthicola 0 4720132 204039 6194352 0 Dickeya solani 1 species 1089444 204038 species 0 1 Dickeya dadantii 4922802 1778540 1 Dickeya fangzhongdai 0 5032447 species 1 122277 0 genus 39910680 0 Pectobacterium 6 1905730 species 7629572 0 1 Pectobacterium parmentieri 554 species 7373255 0 1 Pectobacterium carotovorum species 5043228 0 Pectobacterium wasabiae 1 55208 2042057 species 9835240 0 1 Pectobacterium polaris 29471 species 10029385 1 Pectobacterium atrosepticum 0 1 71655 0 genus 5360730 2 Brenneria 0 species 5360730 0 Brenneria goodwinii 1 1109412 1 84565 0 genus 15587462 0 Sodalis 5 1239307 0 1 Sodalis praecaptivus 5159425 species 4513140 0 Candidatus Sodalis pierantonius 1 species 1486991 63612 4292502 1 Sodalis glossinidius 0 species 1929246 1 Sodalis endosymbiont of Henestaris halophilus 0 1622395 species family 0 1 4094629 1903416 1 0 4094629 genus 82984 1 Pragia fontium 0 4094629 species 82985 1 1903414 0 family 104014579 0 Morganellaceae 20 0 1 583 27274045 3 Proteus 0 genus 584 species 0 1 Proteus mirabilis 23312057 Proteus vulgaris 1 0 3961988 species 585 genus 21495618 0 6 Xenorhabdus 1 626 0 Xenorhabdus nematophila 1 0 4586662 species 628 40577 species 3659523 Xenorhabdus poinarii 1 0 species Xenorhabdus bovienii 1 0 4523083 40576 species 4203651 1 Xenorhabdus doucetiae 0 351671 351679 species 4522699 0 Xenorhabdus hominickii 1 637 0 1 836724 genus 634113 species 836724 0 Arsenophonus symbiont of Lipoptena fortisetosa 1 genus 15930223 0 Photorhabdus 4 1 29487 0 574560 species Photorhabdus temperata 1 0 5147098 Photorhabdus asymbiotica 1 0 5094138 species 291112 species 5688987 1 Photorhabdus luminescens 0 29488 0 581 1 Morganella 2 0 11874077 genus 582 species 11874077 0 1 Morganella morganii 26603892 0 3 genus 586 126385 3990106 Providencia alcalifaciens 1 0 species 587 species 0 Providencia rettgeri 1 9407694 588 13206092 1 Providencia stuartii 0 species 1 1903411 0 family 239715826 Yersiniaceae 38 0 0 13 Yersinia 93411392 genus 0 629 1 29485 species 0 1 Yersinia rohdei 4372253 0 1 Yersinia kristensenii 4496569 species 28152 631 species 9820399 0 Yersinia intermedia 1 2653513 0 1 4963041 no rank 1839800 species 4963041 0 Yersinia sp. FDAARGOS_228 1 7242801 Yersinia frederiksenii 1 0 species 29484 1649845 0 3 22453340 species group 367190 0 1 Yersinia similis 4964409 species 633 species 10364796 Yersinia pseudotuberculosis 1 0 1 Yersinia pestis 0 7124135 species 632 630 0 Yersinia enterocolitica 1 12732490 species Yersinia ruckeri 1 0 18859102 species 29486 263819 4000307 0 Yersinia aleksiciae 1 species 29483 species 0 Yersinia aldovae 1 4471090 genus 0 Chania 2 5488183 1745211 1 0 5488183 0 1 Chania multitudinisentens species 1639108 1 613 0 genus 124014528 Serratia 17 0 2647522 no rank 51531815 9 0 2033438 4986519 0 Serratia sp. MYb239 1 species 768493 species 0 1 Serratia sp. AS13 5442549 1758196 species 0 Serratia sp. SSNIH1 1 5388594 1759437 species 0 Serratia sp. YD25 1 5117644 9943513 0 1 Serratia sp. ATCC 39006 species 104623 species 4858216 0 Serratia sp. FGI94 1 671990 species 5443009 1 Serratia sp. AS12 0 768490 0 1 Serratia sp. FS14 5249875 species 1327989 488142 species 5101896 1 Serratia sp. SCBI 0 7947058 1 Serratia liquefaciens 0 species 614 28151 species 0 1 Serratia proteamaculans 5495657 18051695 0 Serratia fonticola 1 species 47917 82996 1 Serratia plymuthica 0 6554843 species species 0 Serratia rubidaea 1 4922834 61652 24300653 0 Serratia marcescens 1 species 615 5209973 0 Serratia ficaria 1 species 61651 16801723 Rahnella 4 0 genus 0 1 34037 2 0 11144924 no rank 2635087 0 Rahnella sp. Y9602 1 5614252 species 741091 1805933 0 Rouxiella sp. ERMR1:05 1 5530672 species 34038 species Rahnella aquatilis 1 0 5656799 1565532 1 Rouxiella 0 0 genus 1 1903409 0 family 100841059 0 Erwiniaceae 28 51228 1 0 genus 0 2 Wigglesworthia 711269 species 1 Wigglesworthia glossinidia 0 711269 51229 82986 1 0 genus 0 Tatumella 2 8982233 8982233 1 Tatumella citrea 0 species 53336 genus 0 Pantoea 11 54813728 53335 1 0 1654067 0 1 9924096 species group 549 Pantoea agglomerans 1 0 9924096 species 0 3 15690809 no rank 2630326 592316 species 6312783 Pantoea sp. At-9b 1 0 species Pantoea sp. PSNIH1 1 0 4410683 1484158 species 4967343 0 1 Pantoea sp. PSNIH2 1484157 0 1 Pantoea ananatis 5872423 species 553 species 2348022 0 1 Candidatus Pantoea carbekii 1235990 1076550 0 1 Pantoea rwandensis 4327607 species 470934 0 Pantoea vagans 1 7020378 species 1891675 Pantoea alhagi 1 0 4316301 species 66269 species 5314092 0 Pantoea stewartii 1 1 32199 0 genus 591578 0 Buchnera 2 591578 1 Buchnera aphidicola 0 species 9 0 Erwinia 8 26906193 genus 0 551 1 no rank 3957675 1 0 2622719 215689 3957675 0 1 Erwinia sp. Ejp617 species 4481256 0 Erwinia gerundensis 1 species 1619313 species 1 Erwinia amylovora 0 3858195 552 1 Erwinia tasmaniensis 0 4067864 species 338565 0 1 Candidatus Erwinia sp. ErCipseudotaxifoliae 1094672 species 1922217 79967 species 4074263 1 Erwinia pyrifoliae 0 182337 5372268 1 Erwinia billingiae 0 species 2100764 genus 2 0 8836058 665914 species Pantoea gaviniae 1 0 4527605 665913 species 4308453 Pantoea calida 1 0 711082467 116 Enterobacteriaceae 0 family 0 1 543 14260445 4 Shigella 0 genus 0 1 620 622 species 0 1 Shigella dysenteriae 4873338 2629414 4558287 1 0 no rank 1813821 species 4558287 0 Shigella sp. PAMC 28760 1 4828820 0 Shigella flexneri 1 species 623 genus 126734899 22 Enterobacter 0 1 547 0 83659344 12 0 species group 354276 61645 species 6470569 0 Enterobacter asburiae 1 species 21425742 0 3 Enterobacter hormaechei 1 158836 10085880 1812934 6678013 1 Enterobacter cloacae complex 'Hoffmann cluster III' 0 subspecies subspecies 4661849 0 1 Enterobacter xiangfangensis 1296536 Enterobacter cloacae complex sp. ECNIH7 1 0 5388828 species 1915310 1812935 4899997 0 Enterobacter cloacae complex 'Hoffmann cluster IV' 1 species 2077137 4971441 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 0 species 208224 species 1 Enterobacter kobei 0 4927478 species 4876999 1 Enterobacter cloacae complex bacterium 0 2027919 species 20949008 1 Enterobacter cloacae 0 550 species Enterobacter cancerogenus 1 0 4796512 69218 0 1 Enterobacter ludwigii 4952770 species 299767 no rank 43075555 9 0 2608935 1692238 5138701 0 1 Enterobacter sp. FY-07 species species 4534036 0 1 Enterobacter sp. ODB01 1827481 1560339 4763114 1 Enterobacter sp. E20 0 species 0 1 Enterobacter sp. SA187 4429597 species 1914861 4630785 Enterobacter sp. Crenshaw 1 0 species 1977566 399742 1 Enterobacter sp. 638 0 4676461 species 5196641 Enterobacter sp. CRENT-193 1 0 species 2051905 1166130 Enterobacter sp. R4-368 1 0 5155034 species 0 Enterobacter sp. HK169 1 4551186 species 1868135 Raoultella 3 0 22707773 genus 0 160674 1 species 16883842 0 Raoultella ornithinolytica 1 54291 0 1 Raoultella planticola 5823931 species 575 13406859 3 Salmonella 0 genus 0 1 590 28901 species 0 1 Salmonella enterica 8882584 species 4524275 0 Salmonella bongori 1 54736 5548506 0 Gibbsiella 2 genus 0 1 929812 species 0 Gibbsiella quercinecans 1 5548506 929813 570 1 0 genus Klebsiella 10 0 177974659 1134687 species 10676629 Klebsiella michiganensis 1 0 573 1 Klebsiella pneumoniae 0 42121877 species species 42961048 Klebsiella oxytoca 1 0 571 species 19493298 0 1 Klebsiella aerogenes 548 1463165 species 21535338 1 Klebsiella quasipneumoniae 0 species 5946706 0 Klebsiella quasivariicola 1 2026240 2608929 12590537 0 2 no rank 1934254 Klebsiella sp. M5al 1 0 5800138 species species 6790399 Klebsiella sp. LTGPAF-6F 1 0 1905288 244366 22649226 0 1 Klebsiella variicola species genus 2 Cedecea 0 19970488 158483 1 0 158822 species 0 Cedecea neteri 1 19970488 409304 754729 0 1 genus 754729 1 Candidatus Ishikawaella capsulata 0 species 168169 genus 538248 0 Candidatus Moranella 2 1 1048757 0 species 0 1 Candidatus Moranella endobia 538248 1048758 413496 1 0 genus Cronobacter 8 0 32692910 413501 species 4364114 0 1 Cronobacter muytjensii 4436873 0 Cronobacter universalis 1 species 535744 species 1 Cronobacter condimenti 0 4499482 1163710 28141 5648091 Cronobacter sakazakii 1 0 species species 4628405 0 Cronobacter dublinensis 1 413497 Cronobacter turicensis 1 0 4599092 species 413502 413503 4516853 0 1 Cronobacter malonaticus species genus 5 Escherichia 0 54063271 561 1 0 1499973 0 Escherichia marmotae 1 4896291 species 208962 16861544 Escherichia albertii 1 0 species 564 4643861 0 1 Escherichia fergusonii species 1 Escherichia coli 0 27661575 species 562 1 544 0 genus 121296180 0 Citrobacter 14 79535171 0 7 species group 1344959 0 1 Citrobacter freundii complex sp. CFNIH3 5634842 species 2077147 2077148 5629494 1 Citrobacter freundii complex sp. CFNIH4 0 species 57706 0 1 Citrobacter braakii 10079064 species species 0 Citrobacter freundii 1 37135395 546 67827 species 10027437 Citrobacter werkmanii 1 0 species Citrobacter freundii complex sp. CFNIH2 1 0 5340584 2066049 0 1 Citrobacter freundii complex sp. CFNIH9 5688355 species 2077149 2 0 10465731 no rank 2644389 1920110 species 5738233 Citrobacter sp. CFNIH10 1 0 1702170 1 Citrobacter sp. FDAARGOS_156 0 4727498 species 67824 species 5715629 0 Citrobacter farmeri 1 0 1 Citrobacter amalonaticus 7932053 species 35703 545 12203313 0 Citrobacter koseri 1 species 67825 Citrobacter rodentium 1 0 5444283 species 15656261 Pluralibacter 3 0 genus 0 1 1330546 species 1 [Enterobacter] lignolyticus 0 4758499 1334193 10897762 0 1 Pluralibacter gergoviae species 61647 401618 582127 1 0 genus species 0 1 Candidatus Riesia pediculicola 582127 401619 genus 6166452 1 0 579 61648 species 0 1 Kluyvera intermedia 6166452 0 1 83654 15605743 Leclercia 4 0 genus species 4803917 0 Leclercia adecarboxylata 1 83655 2627398 no rank 2 0 10801826 species 5411940 0 1 Leclercia sp. LSNIH1 1920114 1920116 species 5389886 1 Leclercia sp. LSNIH3 0 191675 20 0 39480475 no rank 36866 26862897 5 0 no rank 1920109 6262406 0 Enterobacteriaceae bacterium ENNIH2 1 species species Enterobacteriaceae bacterium strain FGI 57 1 0 4762179 693444 891974 Plautia stali symbiont 1 0 4092852 species 6079128 0 Enterobacteriaceae bacterium ENNIH3 1 species 1920128 species 0 1 Enterobacteriaceae bacterium ENNIH1 5666332 2066051 no rank 12617578 15 0 84563 146507 3 0 4302239 no rank 1441139 secondary endosymbiont of Ctenarytaina eucalypti 1 0 species 1199245 134287 secondary endosymbiont of Heteropsylla cubana 1 0 1121596 species genus 1739504 0 1 568987 1739504 1 Candidatus Hamiltonella defensa 0 species 138072 6 0 4534276 no rank 84564 203804 4534276 0 6 genus 101534 species 791654 Candidatus Blochmannia pennsylvanicus 1 0 203907 species Candidatus Blochmannia floridanus 1 0 705557 251535 Candidatus Blochmannia vafer 1 0 722585 species 251542 species Candidatus Blochmannia chromaiodes 1 0 791219 no rank 1523261 0 2 711328 1505597 773940 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 species Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 0 749321 species 1505596 199891 298471 1 0 no rank 1835721 298471 0 1 secondary endosymbiont of Trabutina mannipara species genus 1 0 938041 1906661 938041 1 Candidatus Gullanella endobia 0 species 1070130 1682492 708439 1 0 genus 1 Candidatus Tachikawaea gelatinosa 0 708439 species 1410383 1 0 352837 genus 1906660 1778264 0 Candidatus Mikella endobia 1 352837 species 1906657 genus 1 0 846562 1778262 species 846562 Candidatus Doolittlea endobia 1 0 genus 0 1 636713 1906659 species 636713 0 1 Candidatus Hoaglandella endobia 1778263 genus 20967799 0 Kosakonia 5 1 1330547 0 species 1 Kosakonia cowanii 0 4857324 208223 1158459 species 4902066 0 Kosakonia sacchari 1 497725 5303342 0 Kosakonia oryzae 1 species species 0 Kosakonia radicincitans 1 5905067 283686 1330545 1 0 genus Lelliottia 4 0 18515918 69220 species 0 Lelliottia nimipressuralis 1 4826854 61646 species 9085730 1 Lelliottia amnigena 0 species 4603334 0 1 Lelliottia jeotgali 1907578 1335483 0 1 4158725 genus Shimwellia blattae 1 0 4158725 species 563 0 135613 1 0 52 Chromatiales 100351010 order 0 1 1676141 3675202 0 3 Wenzhouxiangellaceae family 1 1676142 0 genus 3675202 Wenzhouxiangella 2 0 1579979 species 3675202 Wenzhouxiangella marina 1 0 0 1 449719 7783862 Granulosicoccaceae 3 0 family 1 437504 0 genus 7783862 0 2 Granulosicoccus 7783862 0 Granulosicoccus antarcticus 1 species 437505 family 33915585 0 Ectothiorhodospiraceae 18 1 72276 0 3550080 2 Ectothiorhodospira 0 genus 0 1 1051 3550080 1 0 no rank 2684909 1442136 3550080 0 Ectothiorhodospira sp. BSL-9 1 species 0 1 1765964 3566941 Acidihalobacter 2 0 genus 160660 species 3566941 Acidihalobacter prosperus 1 0 1 1335745 0 genus 3666118 Spiribacter 3 0 1335746 species 0 Spiribacter salinus 1 1739487 species 1 Spiribacter curvatus 0 1926631 1335757 85108 1 0 genus 0 Halorhodospira 2 2678452 species Halorhodospira halophila 1 0 2678452 1053 0 106633 1 0 6 Thioalkalivibrio 17178050 genus 1033854 species 0 Thioalkalivibrio sulfidiphilus 1 3464554 106634 Thioalkalivibrio versutus 1 0 2969361 species 0 1 Thioalkalivibrio nitratireducens 4002350 species 186931 108010 species 1 Thioalkalivibrio paradoxus 0 3756729 2621013 no rank 0 1 2985056 396595 species 2985056 Thioalkalivibrio sp. K90mix 1 0 0 133193 1 0 Alkalilimnicola 2 3275944 genus species 0 Alkalilimnicola ehrlichii 1 3275944 351052 family 0 Chromatiaceae 18 42191179 1046 1 0 1 13724 0 genus 5017071 0 2 Thiocystis 73141 species 5017071 0 1 Thiocystis violascens 0 Marichromatium 2 3779112 genus 0 85076 1 37487 species 3779112 0 1 Marichromatium purpuratum 0 1 1980513 2018309 Candidatus Nitrosoglobus 2 0 genus species 2018309 0 1 Candidatus Nitrosoglobus terrae 1630141 3669074 0 2 Allochromatium genus 0 1 85072 1049 species 0 Allochromatium vinosum 1 3669074 82569 1 0 4790451 no rank 1978339 species 4790451 1 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 0 156885 1 Thioflavicoccus 2 0 4137521 genus 80679 species Thioflavicoccus mobilis 1 0 4137521 4 Nitrosococcus 0 11040657 genus 0 1227 1 species Nitrosococcus oceani 1 0 3522111 1229 473531 1 Nitrosococcus watsonii 0 3373286 species 133539 species 4145260 Nitrosococcus halophilus 1 0 7738984 0 Thiodictyon 2 genus 0 1 53392 0 1 Candidatus Thiodictyon syntrophicum 7738984 species 1166950 0 1 1738654 4059891 Woeseiaceae 3 0 family 0 1 1738655 4059891 Woeseia 2 0 genus species 4059891 0 Woeseia oceani 1 1548547 451214 2 0 3233441 no rank 1 1273155 0 genus 3233441 2 Thiohalobacter 0 585455 0 1 Thiohalobacter thiocyanaticus 3233441 species family 5491850 Halothiobacillaceae 4 0 1 255526 0 1 109262 0 genus 5491850 3 Halothiobacillus 0 0 Halothiobacillus neapolitanus 1 2582886 species 927 1 0 2908964 no rank 2636392 1860122 Halothiobacillus sp. LS2 1 0 2908964 species order 78171285 0 19 118969 0 444 1 14 Legionellaceae 0 73198994 family genus 0 1 9836958 465 9836958 Tatlockia micdadei 1 0 species 451 63362036 12 Legionella 0 genus 0 1 445 27794251 Legionella pneumophila 1 0 species 446 450 species Legionella longbeachae 1 0 6281519 1867846 0 Legionella clemsonensis 1 3272100 species species Legionella hackeliae 1 0 3570857 449 species 2773209 1 Legionella oakridgensis 0 29423 3348070 Legionella spiritensis 1 0 species 452 96230 species 4434890 Legionella fallonii 1 0 species 2989256 1 Legionella lansingensis 0 45067 66969 species 3735697 Legionella waltersii 1 0 2005262 species 529746 0 1 Legionella endosymbiont of Polyplax serrata 28087 species Legionella sainthelensi 1 0 4632441 family 0 Coxiellaceae 5 4972291 118968 1 0 0 1 776 3238451 0 3 Coxiella genus species 0 Coxiella burnetii 1 2581550 777 325775 656901 0 Coxiella endosymbiont of Amblyomma americanum 1 species 134284 no rank 1733840 0 1 1592897 Coxiella-like endosymbiont 1 0 1733840 species order Thiotrichales 31 0 94887723 72273 1 0 1 135617 0 family 13341587 0 Thiotrichaceae 5 genus 4810005 2 Thioploca 0 1 40751 0 40754 species 1 Thioploca ingrica 0 4810005 Beggiatoa 2 0 8531582 genus 0 1021 1 species 0 Beggiatoa leptomitoformis 1 8531582 288004 52603537 0 12 Piscirickettsiaceae family 0 1 135616 0 1 34067 7448792 0 Cycloclasticus 4 genus species 2655425 0 Cycloclasticus zancles 1 1329899 2621467 no rank 0 2 4793367 385025 2363215 0 Cycloclasticus sp. P1 1 species species 2430152 0 1 Cycloclasticus sp. PY97N 728003 40222 genus 0 2 5882390 754477 species 1 Methylophaga frappieri 0 2745290 species 0 1 Methylophaga nitratireducenticrescens 3137100 754476 32753807 1 0 genus 1237 0 1 Piscirickettsia salmonis 32753807 species 1238 28884 0 1 2427734 genus 39765 species Hydrogenovibrio crunogenus 1 0 2427734 0 1 933 4090814 0 Thiomicrospira 3 genus 147268 Thiomicrospira cyclica 1 0 1932455 species 92245 0 1 Thiomicrospira aerophila 2158359 species family 0 13 28942599 34064 genus Francisella 12 0 27281072 262 1 0 2237379 0 Francisella sp. TX077310 1 species 573570 species 0 1 Francisella halioticida 2197430 549298 2610885 0 2 3843917 no rank 475375 1 Francisella sp. MA067296 0 1827930 species Francisella sp. FSC1006 1 0 2015987 species 1547445 954 species 1 Francisella persica 0 3057444 1542390 species Francisella sp. CA97-1460 1 0 1861609 species 2490588 Francisella noatunensis 1 0 657445 0 1 Francisella tularensis 2860943 species 263 622488 1938636 Francisella hispaniensis 1 0 species species 1 Francisella sp. TX077308 0 2035931 573569 28110 4757195 1 Francisella philomiragia 0 species 1869285 1661527 0 1 genus 1661527 Allofrancisella guangzhouensis 1 0 species 594679 0 135619 1 62 Oceanospirillales 0 176082450 order family 10496465 0 5 1920240 261963 1 0 genus Kangiella 5 0 10496465 species 2653010 Kangiella profundi 1 0 1561924 species 2495242 0 Kangiella geojedonensis 1 914150 1144748 species Kangiella sediminilitoris 1 0 2496140 0 Kangiella koreensis 1 2852073 species 261964 28256 1 0 family 31 Halomonadaceae 0 85453744 1 204286 0 genus 4176400 Cobetia 2 0 28258 0 Cobetia marina 1 4176400 species 0 2 Salinicola 4276240 genus 0 404432 1 1771309 0 1 Salinicola tamaricis 4276240 species no rank 1225468 4 0 114403 114185 genus 1 0 157543 114186 157543 0 Candidatus Carsonella ruddii 1 species genus 2 Candidatus Evansia 0 357498 1495768 1 0 357498 0 1 Candidatus Evansia muelleri species 1495769 114399 710427 1 0 no rank genus 710427 1 0 235572 91844 710427 Candidatus Portiera aleyrodidarum 1 0 species 0 504090 1 0 Kushneria 3 7251816 genus 157779 Kushneria marisflavi 1 0 3667185 species 698828 species 1 Kushneria konosiri 0 3584631 1 2745 0 genus 60439743 0 Halomonas 15 species 0 1 Halomonas aestuarii 3543891 1897729 species 0 Halomonas huangheensis 1 4757486 1178482 213554 species 1 Halomonas campaniensis 0 4074048 2609666 36104205 0 8 no rank 1962264 4803686 1 Halomonas sp. 'Soap Lake #7' 0 species species 0 Halomonas sp. SF2003 1 4358421 2136172 1883416 species 4129523 Halomonas sp. 1513 1 0 1971364 4158464 1 Halomonas sp. GT 0 species species 5031573 0 1 Halomonas sp. R57-5 1610576 1504981 species 1 Halomonas sp. KO116 0 5168360 0 1 Halomonas sp. GFAJ-1 3650492 species 1118153 0 1 Halomonas sp. 'Soap Lake #6' 4803686 species 1949203 3933432 0 1 Halomonas hydrothermalis species 115561 species 3973651 0 1 Halomonas chromatireducens 507626 species 4053030 0 1 Halomonas beimenensis 475662 genus 4387428 Halotalea 2 0 1 376488 0 376489 species 4387428 Halotalea alkalilenta 1 0 0 42054 1 Chromohalobacter 2 0 3696649 genus species 0 1 Chromohalobacter salexigens 3696649 158080 0 1 224372 24960664 0 Alcanivoracaceae 8 family genus Alcanivorax 6 0 20046161 59753 1 0 1306787 Alcanivorax pacificus 1 0 4168427 species species 0 Alcanivorax borkumensis 1 3120143 59754 285091 species 4928223 1 Alcanivorax dieselolei 0 1094342 species 4733951 0 Alcanivorax xenomutans 1 2638842 no rank 0 1 3095417 1113728 species Alcanivorax sp. NBRC 101098 1 0 3095417 genus 1 0 4914503 2025617 species 0 Ketobacter alkanivorans 1 4914503 1917421 10136019 0 3 family 255527 genus 3660060 0 1 230494 3660060 1 Reinekea forsetii 0 species 1336806 1 1445504 0 genus 6475959 Gynuella 2 0 0 Gynuella sunshinyii 1 6475959 species 1445505 31441010 0 Oceanospirillaceae 10 family 0 1 135620 187492 3864693 0 1 genus 187493 species 0 1 Thalassolituus oleivorans 3864693 1 48075 0 genus 5191608 Marinobacterium 2 0 1821621 5191608 0 Marinobacterium aestuarii 1 species genus 4406383 1 0 188907 species 4406383 Oleispira antarctica 1 0 188908 genus 4293726 0 1 1537406 species 1 Bacterioplanes sanyensis 0 4293726 1249553 1 28253 0 genus 13684600 0 Marinomonas 4 0 Marinomonas mediterranea 1 4684316 species 119864 3899940 1 Marinomonas posidonica 0 species 936476 5100344 1 0 no rank 196814 400668 species 5100344 Marinomonas sp. MWYL1 1 0 0 1 224379 7215267 Hahellaceae 3 0 family 0 158481 1 0 Hahella 2 7215267 genus 158327 species 7215267 0 Hahella chejuensis 1 191033 family 1 0 6379281 141450 6379281 0 1 genus 141451 species 0 1 Oleiphilus messinensis 6379281 135615 order 1389350 0 2 1389350 0 2 family 868 genus 1389350 2 Dichelobacter 0 1 869 0 species 1 Dichelobacter nodosus 0 1389350 870 order 6823486 0 Acidiferrobacterales 6 1 1692040 0 0 1 1692041 6823486 5 Acidiferrobacteraceae 0 family genus 0 Sulfuricaulis 2 2864672 1744881 1 0 species 2864672 1 Sulfuricaulis limicola 0 1620215 genus Sulfurifustis 2 0 3958814 1692042 1 0 0 1 Sulfurifustis variabilis 3958814 species 1675686 14 0 25566099 no rank 118884 3345119 1 0 genus 1524249 1249552 3345119 1 Pseudohongiella spirulinae 0 species 0 1 655184 3226597 0 Candidatus Thioglobus 3 genus 1427364 species Candidatus Thioglobus singularis 1 0 1714148 1512449 1 Candidatus Thioglobus autotrophicus 0 species 1705394 198346 1040878 0 1 no rank 186490 0 1 Candidatus Baumannia cicadellinicola 1040878 species 1 1608298 0 genus 3153637 Thiolapillus 2 0 1076588 0 Thiolapillus brandeum 1 3153637 species 3962284 2 Sedimenticola 0 genus 0 1 349742 species 3962284 Sedimenticola thiotaurini 1 0 1543721 7185214 2 0 no rank 33811 1248727 species 2597759 endosymbiont of unidentified scaly snail isolate Monju 1 0 83406 species 4587455 1 gamma proteobacterium HdN1 0 32036 no rank 3 0 3652370 113267 1469434 0 1 Bathymodiolus septemdierum thioautotrophic gill symbiont species genus 1160782 0 1 1541743 species 1160782 0 1 Candidatus Ruthia magnifica 386487 1 Calyptogena okutanii thioautotrophic gill symbiont 0 1022154 species 410330 0 1 135622 417388140 0 Alteromonadales 95 order 10937269 Idiomarinaceae 6 0 family 0 1 267893 0 135575 1 Idiomarina 5 0 10937269 genus 2587498 1 Idiomarina piscisalsi 0 species 1096243 135577 species 2839538 1 Idiomarina loihiensis 0 2614829 0 2 5510233 no rank 2100422 1 Idiomarina sp. OT37-5b 0 2893517 species 2055892 0 Idiomarina sp. X4 1 2616716 species family 0 1 5093989 267891 genus 5093989 0 1 58050 80854 5093989 0 Moritella viscosa 1 species family 116079676 Shewanellaceae 25 0 1 267890 0 genus 0 Shewanella 24 116079676 22 1 0 species 1 Shewanella woodyi 0 5935403 60961 5226917 0 Shewanella halifaxensis 1 species 271098 260364 0 Shewanella marisflavi 1 4321452 species 359303 species 4602594 Shewanella loihica 1 0 species 4845257 0 1 Shewanella frigidimarina 56812 70863 species 0 Shewanella oneidensis 1 5131424 62322 species 5325150 0 Shewanella baltica 1 species 0 1 Shewanella psychrophila 6353406 225848 24 species 4749735 Shewanella putrefaciens 1 0 404011 species 0 Shewanella piezotolerans 1 5396476 2018305 species 0 Shewanella bicestrii 1 5004414 60478 4306142 0 1 Shewanella amazonensis species no rank 0 6 29705365 196818 4706287 0 1 Shewanella sp. MR-4 species 60480 0 Shewanella sp. W3-18-1 1 4708380 species 351745 1 Shewanella sp. ANA-3 0 5251146 species 94122 4799109 0 Shewanella sp. MR-7 1 species 60481 2059264 4973697 Shewanella sp. Pdp11 1 0 species species 5266746 Shewanella sp. WE21 1 0 2029986 192073 0 1 Shewanella denitrificans 4545906 species species 5174581 0 1 Shewanella pealeana 70864 271097 species 5517674 1 Shewanella sediminis 0 93973 species 4975677 Shewanella japonica 1 0 60217 0 Shewanella violacea 1 4962103 species 123570319 0 Pseudoalteromonadaceae 25 family 0 1 267888 genus 0 Pseudoalteromonas 24 123570319 53246 1 0 species 4721971 0 Pseudoalteromonas arctica 1 394751 species 4868993 1 Pseudoalteromonas phenolica 0 161398 0 1 Pseudoalteromonas agarivorans 4544962 species 176102 0 Pseudoalteromonas luteoviolacea 1 18666577 species 43657 288 species 0 Pseudoalteromonas atlantica 1 4428300 5913780 0 Pseudoalteromonas rubra 1 species 43658 228 species 3850272 0 Pseudoalteromonas haloplanktis 1 314281 0 1 Pseudoalteromonas tunicata 4959443 species 28109 4274777 Pseudoalteromonas nigrifaciens 1 0 species species 4815987 Pseudoalteromonas piratica 1 0 1348114 267375 species 0 1 Pseudoalteromonas marina 3441076 194690 0 5 23206067 no rank 4037671 0 Pseudoalteromonas sp. SM9913 1 species 234831 4099967 0 Pseudoalteromonas sp. 13-15 1 species 1761891 species 1 Pseudoalteromonas sp. NC201 0 5378320 1514074 283699 0 1 Pseudoalteromonas sp. Bsw20308 4830226 species 1720343 species 4859883 0 1 Pseudoalteromonas sp. 1_2015MBL_MicDiv 43662 5317048 Pseudoalteromonas piscicida 1 0 species species Pseudoalteromonas tetraodonis 1 0 4128400 43659 152297 8264159 Pseudoalteromonas issachenkonii 1 0 species species Pseudoalteromonas aliena 1 0 4594697 247523 species 0 1 Pseudoalteromonas spongiae 4925766 298657 28107 4500451 Pseudoalteromonas espejiana 1 0 species 166935 species 0 Pseudoalteromonas translucida 1 4147593 267894 7612008 0 2 family 0 2 7612008 genus 67572 2614957 no rank 3052410 0 1 species 1 Psychromonas sp. CNPT3 0 3052410 314282 species 1 Psychromonas ingrahamii 0 4559598 357794 family 122014037 Alteromonadaceae 26 0 1 72275 0 1751872 genus 1 0 4378835 species 0 1 Lacimicrobium alkaliphilum 4378835 1526571 261825 genus 0 1 4416600 4416600 1 Agarivorans gilvus 0 species 680279 89404 genus 0 2 9527820 2618684 no rank 0 1 5393591 species 5393591 Glaciecola sp. 4H-3-7+YE-5 1 0 983545 4134229 1 Glaciecola nitratireducens 0 species 300231 1621534 5413691 0 1 genus 326544 1 Paraglaciecola psychrophila 0 5413691 species 1 226 0 genus 54630705 0 Alteromonas 10 species 4649146 1 Alteromonas addita 0 287094 9533996 0 1 Alteromonas stellipolaris species 233316 28108 species 0 1 Alteromonas macleodii 6531170 2614992 3 0 13201043 no rank 1917158 species 4143824 0 Alteromonas sp. RW2A1 1 2058133 0 Alteromonas sp. MB-3u-76 1 4360928 species 0 Alteromonas sp. Mac1 1 4696291 species 1777491 6976897 1 Alteromonas mediterranea 0 species 314275 species 0 1 Alteromonas australica 8766305 589873 715451 0 Alteromonas naphthalenivorans 1 4972148 species 0 1 2742 43646386 0 Marinobacter 10 genus 2743 0 Marinobacter hydrocarbonoclasticus 1 4384621 species 330734 species 0 Marinobacter psychrophilus 1 3998597 1874317 species Marinobacter salinus 1 0 4121005 species 4651725 0 Marinobacter adhaerens 1 1033846 1420917 9246692 1 Marinobacter salarius 0 species 1420916 species Marinobacter similis 1 0 3975896 83889 no rank 13267850 3 0 1749259 species 4435564 1 Marinobacter sp. LQ44 0 490759 species 1 Marinobacter sp. BSs20148 0 4063864 species Marinobacter sp. CP1 1 0 4768422 1671721 0 7 27801683 family 267889 genus Colwellia 6 0 23940013 28228 1 0 196834 13905559 0 3 no rank 4884300 0 1 Colwellia sp. PAMC 21821 species 1816219 1816218 4683314 Colwellia sp. PAMC 20917 1 0 species 58049 0 Colwellia sp. MT41 1 4337945 species 28229 species 5373180 0 Colwellia psychrerythraea 1 1967665 4661274 0 1 Colwellia beringensis species genus 3861670 1 0 1518149 1763536 3861670 Thalassotalea crassostreae 1 0 species family 4279159 2 0 267892 genus 4279159 0 2 Ferrimonas 1 44011 0 species 4279159 0 1 Ferrimonas balearica 44012 order 0 Pseudomonadales 128 833308009 72274 1 0 family 624372673 Pseudomonadaceae 85 0 1 135621 0 genus 0 80 Pseudomonas 599771514 286 1 0 136845 0 6 41598045 species group 78327 species Pseudomonas mosselii 1 0 8870556 species 0 1 Pseudomonas monteilii 7518946 76759 species 6233254 0 Pseudomonas plecoglossicida 1 70775 303 9248003 0 Pseudomonas putida 1 species 4892930 1 Pseudomonas fulva 0 species 47880 species 4834356 Pseudomonas oryzihabitans 1 0 47885 157783 species 0 1 Pseudomonas cremoricolorata 4780403 136843 0 9 75104216 species group 294 14826544 0 Pseudomonas fluorescens 1 species 5986236 1 Pseudomonas orientalis 0 species 76758 species 5512241 0 Pseudomonas poae 1 200451 6124363 Pseudomonas corrugata 1 0 species 47879 47878 13440913 0 1 Pseudomonas azotoformans species 1 Pseudomonas trivialis 0 6452803 species 200450 76761 species 6852809 0 Pseudomonas veronii 1 75612 0 1 Pseudomonas mandelii 7188564 species species 0 Pseudomonas protegens 1 8719743 380021 13594158 1 Pseudomonas brassicacearum 0 species 930166 species 12724617 0 Pseudomonas cerasi 1 1583341 136846 species group 0 2 13615122 578833 0 1 9231642 species subgroup 316 species 0 1 Pseudomonas stutzeri 9231642 species Pseudomonas balearica 1 0 4383480 74829 species 6100532 1 Pseudomonas lurida 0 244566 157782 species 0 Pseudomonas parafulva 1 9778402 species 0 1 Pseudomonas koreensis 12292986 198620 0 1 Pseudomonas frederiksbergensis 18923076 species 104087 237609 species 5764622 1 Pseudomonas alkylphenolica 0 0 1 Pseudomonas silesiensis 6823539 species 1853130 species 6162905 Pseudomonas knackmussii 1 0 65741 species group 71958375 6 0 136841 6484828 1 Pseudomonas resinovorans 0 species 53412 300 species 0 Pseudomonas mendocina 1 6702726 species 4406305 Pseudomonas alcaligenes 1 0 43263 species subgroup 0 1 6242949 1232139 1149133 species 0 Pseudomonas furukawaii 1 6242949 53408 species 0 Pseudomonas citronellolis 1 14631203 287 1 Pseudomonas aeruginosa 0 33490364 species 2583993 no rank 187677344 30 0 1856685 6256697 0 Pseudomonas sp. TCU-HL1 1 species 6332373 0 1 Pseudomonas sp. StFLB209 species 1028989 species 6183388 1 Pseudomonas sp. UW4 0 1207075 1931241 species 4035153 0 Pseudomonas sp. S-6-2 1 species 1 Pseudomonas sp. CC6-YY-74 0 5040792 1930532 2069256 Pseudomonas sp. XWY-1 1 0 6297253 species 6499364 1 Pseudomonas sp. FDAARGOS_380 0 species 2018067 1259844 5891312 Pseudomonas sp. FGI182 1 0 species species 0 Pseudomonas sp. GR 6-02 1 6500345 1659194 1981174 0 1 Pseudomonas sp. M30-35 4926954 species 0 Pseudomonas sp. MYb193 1 6211636 species 1827300 2083055 species 0 1 Pseudomonas sp. LH1G9 6548975 1611770 species 6986763 1 Pseudomonas sp. MRSN12121 0 species 6172256 Pseudomonas sp. SWI36 1 0 2083052 2083054 species 6289439 0 1 Pseudomonas sp. LG1D9 2049589 species 0 1 Pseudomonas sp. HLS-6 5276694 2083053 species 0 Pseudomonas sp. SWI44 1 5919083 species 0 1 Pseudomonas sp. NC02 6890566 2067572 species 6178825 0 1 Pseudomonas sp. JY-Q 1338689 1500686 6885464 1 Pseudomonas sp. Os17 0 species 0 Pseudomonas sp. URMO17WK12:I11 1 11209782 species 1283291 1649877 0 Pseudomonas sp. CCOS 191 1 6012947 species 1500687 0 1 Pseudomonas sp. St29 6833117 species 1636610 6313552 0 Pseudomonas sp. PONIH3 1 species 1415630 species 7012672 0 1 Pseudomonas sp. TKP 69328 0 1 Pseudomonas sp. VLB120 5966222 species species 1 Pseudomonas sp. DR 5-09 0 6427864 1534110 2083051 Pseudomonas sp. SWI6 1 0 5652054 species 5229495 1 Pseudomonas sp. LPH1 0 species 1898684 5696307 0 1 Pseudomonas sp. ATCC 13867 species 1294143 species 0 Pseudomonas versuta 1 5149788 1788301 5340293 Pseudomonas alcaliphila 1 0 species 101564 species group 28363208 2 0 136842 296 10253943 Pseudomonas fragi 1 0 species species 18109265 Pseudomonas chlororaphis 1 0 587753 136849 species group 0 8 51449258 46257 0 1 Pseudomonas avellanae 6576340 species 251701 species 6475100 0 Pseudomonas syringae group genomosp. 3 1 6093513 0 1 Pseudomonas viridiflava species 33069 species 1 Pseudomonas cichorii 0 5986012 36746 species 5018820 1 Pseudomonas sp. Lz4W 0 1206777 9007236 1 0 species subgroup 251695 0 Pseudomonas syringae 1 9007236 species 317 species subgroup 12292237 2 0 251698 1 Pseudomonas amygdali 0 6227599 species 47877 29438 species 1 Pseudomonas savastanoi 0 6064638 6607040 Pseudomonas antarctica 1 0 species 219572 216142 species 0 1 Pseudomonas rhizosphaerae 4688635 312306 species 0 1 Pseudomonas entomophila 5888780 species 1 Pseudomonas psychrotolerans 0 5386170 237610 0 1 14141857 genus 1849530 1697053 14141857 Oblitimonas alkaliphila 1 0 species 10459302 0 3 subfamily 351 1 352 0 genus 10459302 0 Azotobacter 3 species 0 Azotobacter vinelandii 1 5351632 354 5107670 0 Azotobacter chroococcum 1 species 353 0 1 468 208935336 42 Moraxellaceae 0 family 25 Acinetobacter 0 139083132 genus 0 469 1 species Acinetobacter soli 1 0 3636349 487316 202950 3598621 0 1 species 62977 no rank 3598621 0 Acinetobacter sp. ADP1 1 1324350 0 1 Acinetobacter equi 3054269 species species 6666364 0 1 Acinetobacter junii 40215 no rank 23878222 0 7 196816 species 1 Acinetobacter sp. ACNIH1 0 3696158 1636603 Acinetobacter sp. TGL-Y2 1 0 3691287 species 1407071 Acinetobacter sp. NCu2D-2 1 0 3048277 species 1608473 1758189 species 4169274 0 Acinetobacter sp. ACNIH2 1 1646498 species 1 Acinetobacter sp. TTH0-4 0 2962453 2079596 2953039 1 Acinetobacter sp. SWBY1 0 species 1808001 species 1 Acinetobacter sp. LoGeW2-3 0 3357734 species 0 1 Acinetobacter larvae 3741098 1789224 species 0 1 Acinetobacter bereziniae 4509124 106648 species 6860884 0 1 Acinetobacter haemolyticus 29430 species group 0 5 65346036 909768 species 0 1 Acinetobacter pittii 18362078 48296 470 species 0 1 Acinetobacter baumannii 22550484 0 1 Acinetobacter lactucae 3981712 species 1785128 12206785 Acinetobacter nosocomialis 1 0 species 106654 0 Acinetobacter calcoaceticus 1 8244977 species 471 40214 species 1 Acinetobacter johnsonii 0 4081329 species 3157380 Acinetobacter indicus 1 0 756892 40216 3132860 0 1 Acinetobacter radioresistens species species 0 1 Acinetobacter schindleri 3268053 108981 species 4152543 0 1 Acinetobacter oleivorans 1148157 0 11 Psychrobacter 31478673 genus 0 497 1 2931580 1 Psychrobacter urativorans 0 species 45610 Psychrobacter cryohalolentis 1 0 3104871 species 330922 334543 1 Psychrobacter arcticus 0 2650701 species species 3349444 0 Psychrobacter alimentarius 1 261164 0 6 19442077 no rank 196806 species 2995049 Psychrobacter sp. PRwf-1 1 0 349106 1699624 species 0 Psychrobacter sp. P11G5 1 3519144 1720344 3138120 0 1 Psychrobacter sp. AntiMn-1 species 1699622 species 3366617 0 Psychrobacter sp. P2G3 1 571800 species Psychrobacter sp. G 1 0 3113999 species 3309148 Psychrobacter sp. DAB_AL43B 1 0 1028416 5 Moraxella 0 38373531 genus 0 475 1 species 1 Moraxella bovoculi 0 13620373 386891 34062 species 1 Moraxella osloensis 0 16678475 species 0 1 Moraxella catarrhalis 5768588 480 29433 species 1 Moraxella ovis 0 2306095 0 135614 1 Xanthomonadales 54 0 311694514 order 1 32033 0 family 274077178 0 Xanthomonadaceae 39 1 338 0 genus 173585577 Xanthomonas 18 0 species Xanthomonas phaseoli 1 0 15877123 1985254 343 4638247 0 1 Xanthomonas translucens species 366650 species 0 1 Xanthomonas alfalfae 4967469 4909766 0 1 Xanthomonas vasicola species 56459 29447 species Xanthomonas albilineans 1 0 3852299 Xanthomonas axonopodis 1 0 5296525 species 53413 species 0 Xanthomonas hortorum 1 5250904 56454 21445839 1 Xanthomonas fragariae 0 species 48664 species 5122383 Xanthomonas perforans 1 0 442694 643453 species group 0 2 37883960 0 Xanthomonas citri 1 27582413 species 346 366648 1 Xanthomonas fuscans 0 10301547 species 1 Xanthomonas euvesicatoria 0 8169309 species 456327 90270 0 1 Xanthomonas gardneri 11041650 species 339 1 Xanthomonas campestris 0 7252632 species 56460 Xanthomonas vesicatoria 1 0 5371907 species species 27499458 0 1 Xanthomonas oryzae 347 56458 5006106 0 Xanthomonas sacchari 1 species genus 7107938 Pseudoxanthomonas 3 0 1 83618 0 314722 species 3655384 0 1 Pseudoxanthomonas suwonensis 415229 3452554 1 Pseudoxanthomonas spadix 0 species 0 83614 1 0 Luteimonas 2 3351776 genus 2629088 no rank 0 1 3351776 3351776 0 1 Luteimonas sp. 100111 species 2006110 36496510 0 Lysobacter 5 genus 0 1 68 84531 0 Lysobacter antibioticus 1 11681564 species 262324 species 1 Lysobacter gummosus 0 6056618 69 species 6096022 0 1 Lysobacter enzymogenes species Lysobacter capsici 1 0 12662306 435897 2370 genus 0 1 4733624 2371 0 Xylella fastidiosa 1 4733624 species 1 40323 0 genus 48801753 0 9 Stenotrophomonas species 1 Stenotrophomonas rhizophila 0 4198652 216778 species 1 Stenotrophomonas nitritireducens 0 4541729 83617 species 1 Stenotrophomonas acidaminiphila 0 7799161 128780 species group 1 0 14196011 995085 species 0 Stenotrophomonas maltophilia 1 14196011 40324 196198 18066200 0 4 no rank 1904944 species 1 Stenotrophomonas sp. LM091 0 4317450 2005046 species 4512703 1 Stenotrophomonas sp. WZN-1 0 1827305 0 Stenotrophomonas sp. MYb57 1 4694453 species 4541594 0 1 Stenotrophomonas sp. KCTC 12332 species 1793721 1 1775411 0 family 37617336 Rhodanobacteraceae 14 0 4446619 0 2 Dokdonella genus 0 1 323413 0 1 Dokdonella koreensis 4446619 species 323415 0 1 242605 4765486 0 Luteibacter 2 genus 0 Luteibacter rhizovicinus 1 4765486 species 242606 2233801 0 1 6120935 genus species Xanthomonadales bacterium D13 1 0 6120935 2021234 genus 0 2 Rhodanobacter 4225490 75309 1 0 0 1 Rhodanobacter denitrificans 4225490 species 666685 0 1 231454 14455348 Dyella 4 0 genus 231455 4831185 Dyella japonica 1 0 species 1379159 Dyella jiangningensis 1 0 5396991 species 4227172 0 Dyella thiooxydans 1 species 445710 genus Frateuria 2 0 3603458 70411 1 0 81475 0 1 Frateuria aurantia 3603458 species 1 1934945 0 order 3243537 0 4 Immundisolibacterales family 0 3 Immundisolibacteraceae 3243537 1934946 1 0 0 1 1934947 3243537 0 Immundisolibacter 2 genus 1810504 species Immundisolibacter cernigliae 1 0 3243537 0 1 28216 1870035534 Betaproteobacteria 350 0 class order 23 Rhodocyclales 0 60841974 206389 1 0 Azonexaceae 3 0 4501104 family 0 2008795 1 73029 1 0 genus 0 Dechloromonas 2 4501104 259537 1 Dechloromonas aromatica 0 4501104 species family 6 Rhodocyclaceae 0 11726614 75787 1 0 genus 0 Azospira 2 3806980 146937 1 0 Azospira oryzae 1 0 3806980 species 146939 4727255 Aromatoleum 2 0 genus 0 1 551759 4727255 1 Aromatoleum aromaticum 0 species 551760 75788 no rank 3192379 0 1 1898103 3192379 0 Rhodocyclaceae bacterium 1 species Zoogloeaceae 13 0 44614256 family 0 2008794 1 12960 1 0 genus 0 Azoarcus 6 23129088 4 0 18677337 no rank 2629479 species Azoarcus sp. SY39 1 0 3225512 2067960 species 4376040 0 Azoarcus sp. BH72 1 62928 Azoarcus sp. CIB 1 0 5257030 species 198107 species 5818755 0 Azoarcus sp. KH32C 1 748247 418699 0 1 Azoarcus olearius 4451751 species genus 21485168 6 Thauera 0 1 33057 0 96773 3735506 1 Thauera chlorobenzoica 0 species 3711792 1 Thauera aromatica 0 species 59405 2609274 2 0 9866116 no rank species 5291530 Thauera sp. K11 1 0 2005884 85643 species 0 1 Thauera sp. MZ1T 4574586 1134435 4171754 1 Thauera humireducens 0 species 91572742 0 35 Neisseriales order 0 1 206351 0 Chromobacteriaceae 13 35069324 family 0 1499392 1 90153 19688475 0 4 no rank genus 19688475 Chromobacterium 4 0 1 535 0 species 9980885 Chromobacterium vaccinii 1 0 1108595 no rank 0 1 5138981 2641838 species 1 Chromobacterium sp. ATCC 53434 0 5138981 2059672 species 0 1 Chromobacterium violaceum 4568609 536 168470 1 0 genus 2 Laribacter 0 3296800 species 3296800 0 Laribacter hongkongensis 1 168471 2 Aquaspirillum 0 3962240 genus 0 187 1 2620219 0 1 3962240 no rank 1938604 species 3962240 1 Aquaspirillum sp. LM1 0 2 Pseudogulbenkiania 0 4332995 genus 0 568394 1 2642558 no rank 4332995 0 1 748280 species 4332995 1 Pseudogulbenkiania sp. NH8B 0 1 885864 0 genus 3788814 2 Jeongeupia 0 3788814 0 1 no rank 2619593 species Jeongeupia sp. USM3 1 0 3788814 1906741 0 481 1 0 21 Neisseriaceae 56503418 family 2192577 0 Eikenella 2 genus 0 1 538 0 Eikenella corrodens 1 2192577 species 539 1193515 1 0 2527978 genus 1196083 0 Snodgrassella alvi 1 2527978 species no rank 0 1 2820660 421605 species 0 1 Neisseriaceae bacterium DSM 100970 2820660 2052837 0 1 482 40094371 12 Neisseria 0 genus 487 species 9765549 0 Neisseria meningitidis 1 species 2496444 1 Neisseria sp. 10023 0 1853278 485 species 0 1 Neisseria gonorrhoeae 8294881 488 species 0 1 Neisseria mucosa 2688408 no rank 4883816 0 2 2623750 2511904 0 1 Neisseria sp. 10022 species 1853276 655307 0 Neisseria sp. KEM232 1 2371912 species 326523 2552522 Neisseria zoodegmatis 1 0 species species 2256647 1 Neisseria elongata 0 495 0 1 Neisseria sicca 2783943 species 490 species Neisseria lactamica 1 0 2183664 486 28091 2188497 0 Neisseria weaveri 1 species 71 1 0 2469862 genus 72 2469862 0 1 Simonsiella muelleri species genus 3 Vitreoscilla 0 6397970 59 1 0 63 3787551 0 Vitreoscilla filiformis 1 species 2627922 no rank 2610419 1 0 species Vitreoscilla sp. C1 1 0 2610419 96942 no rank 17444912 14 0 119066 0 327159 1 0 Candidatus Accumulibacter 2 5306133 genus 327160 species Candidatus Accumulibacter phosphatis 1 0 5306133 1301080 112061 0 1 genus 1 Candidatus Nasuia deltocephalinicola 0 112061 species 1160784 1 33055 0 genus 4107341 0 Kinetoplastibacterium 6 Kinetoplastibacterium blastocrithidii 1 0 820033 species 233181 833125 1 Candidatus Kinetoplastibacterium desouzaii 0 species 994692 species 0 1 Candidatus Kinetoplastibacterium oncopeltii 810172 994696 species 0 1 Candidatus Kinetoplastibacterium crithidii 821871 33056 994695 species 1 Candidatus Kinetoplastibacterium galatii 0 822140 6852568 2 0 no rank 33809 1904640 species 4806848 0 1 Betaproteobacteria bacterium GR16-43 0 1 beta proteobacterium CB 2045720 species 543913 1 1381133 0 genus 927880 Candidatus Profftella 2 0 927880 0 1 Candidatus Profftella armatura species 669502 189384 138929 1 0 genus 189385 species 0 Candidatus Tremblaya princeps 1 138929 80840 1 0 order 0 Burkholderiales 234 1626717405 Alcaligenaceae 42 0 461327215 family 0 506 1 genus Bordetella 17 0 348972970 517 1 0 Bordetella genomosp. 8 1 0 6167536 species 1416806 520 1 Bordetella pertussis 0 237655209 species 519 species 6406911 0 1 Bordetella parapertussis 9084471 0 Bordetella genomosp. 9 1 species 1416803 1 Bordetella petrii 0 5287950 species 94624 2630031 no rank 5532470 1 0 5532470 Bordetella sp. H567 1 0 species 1697043 species 0 1 Bordetella hinzii 14686667 103855 species 0 1 Bordetella bronchialis 11845675 463025 Bordetella holmesii 1 0 9606067 species 35814 518 species Bordetella bronchiseptica 1 0 9103328 463040 0 1 Bordetella genomosp. 13 5380929 species 463024 species 5163295 0 Bordetella genomosp. 6 1 1 Bordetella avium 0 3732255 species 521 123899 species 1 Bordetella trematum 0 8806998 463014 species 1 Bordetella flabilis 0 5954318 species 4558891 1 Bordetella pseudohinzii 0 1331258 5575440 3 Taylorella 0 genus 0 1 29574 84590 0 Taylorella asinigenitalis 1 1638559 species 29575 1 Taylorella equigenitalis 0 3936881 species genus 4848101 0 2 Orrella 1 1921582 0 species 4848101 Orrella dioscoreae 1 0 1851544 9188005 0 3 Advenella genus 0 1 290425 0 1 Advenella kashmirensis 4423879 species 310575 302406 species 4764126 0 1 Advenella mimigardefordensis 0 507 1 0 2 Alcaligenes 16449801 genus 511 0 1 Alcaligenes faecalis 16449801 species genus 0 1 1959069 1472344 1472345 1959069 Basilea psittacipulmonis 1 0 species 2688496 1 0 genus 1100891 species Paenalcaligenes hominis 1 0 2688496 643674 0 2 Pusillimonas 3924810 genus 0 305976 1 3924810 1 0 no rank 2640016 3924810 Pusillimonas sp. T7-7 1 0 species 1007105 90243 1 0 genus 2 Oligella 0 2511315 90245 species 2511315 1 Oligella urethralis 0 0 359336 1 Castellaniella 2 0 3952818 genus 75697 species 3952818 Castellaniella defragrans 1 0 genus 0 Achromobacter 6 61256390 222 1 0 2626865 1 0 6648943 no rank species 0 Achromobacter sp. AONIH1 1 6648943 1758194 85698 0 Achromobacter xylosoxidans 1 15300294 species 217204 13385742 Achromobacter insolitus 1 0 species Achromobacter denitrificans 1 0 13155420 species 32002 217203 Achromobacter spanius 1 0 12765991 species 200671170 59 Comamonadaceae 0 family 0 1 80864 52972 1 0 genus 3 Polaromonas 0 11264819 216465 species 5366143 1 Polaromonas naphthalenivorans 0 2638319 no rank 5898676 1 0 296591 Polaromonas sp. JS666 1 0 5898676 species 219181 1 0 genus 0 Ottowia 3 6826794 species 3901011 0 Ottowia sp. KADR8-3 1 2109914 2925783 1 0 no rank 2645081 species 2925783 0 Ottowia sp. oral taxon 894 1 1658672 3754020 Melaminivora 2 0 genus 0 1 1649468 no rank 3754020 1 0 2641902 species Melaminivora sp. SC2-9 1 0 3754020 2109913 genus 0 Hydrogenophaga 4 14851293 47420 1 0 9907161 2 0 no rank 2610897 1842537 0 1 Hydrogenophaga sp. RAC07 4674684 species Hydrogenophaga sp. PBC 1 0 5232477 species 795665 Hydrogenophaga crassostreae 1 0 4944132 species 1763535 0 1 665874 6321787 0 3 Limnohabitans genus 2626134 no rank 6321787 2 0 1678128 species 0 Limnohabitans sp. 63ED37-2 1 3372992 0 1 Limnohabitans sp. 103DPR2 2948795 species 1678129 364316 1 0 genus 0 Verminephrobacter 2 5597943 364317 species 5597943 1 Verminephrobacter eiseniae 0 0 5 Rhodoferax 19185716 genus 0 28065 1 species 0 Rhodoferax ferrireducens 1 4969784 192843 0 Rhodoferax antarcticus 1 4055436 species 81479 1842727 species 5895641 0 1 Rhodoferax koreense 1484693 species 4264855 0 Rhodoferax saidenbachensis 1 2991840 0 Candidatus Symbiobacter 2 genus 0 1 1436289 1436290 0 Candidatus Symbiobacter mobilis 1 2991840 species genus 5 Delftia 0 27079456 80865 1 0 2613839 0 2 13116226 no rank 742013 species 0 Delftia sp. Cs1-4 1 6685842 species 1 Delftia sp. HK171 0 6430384 1920191 species 1 Delftia tsuruhatensis 0 7195716 180282 80866 0 Delftia acidovorans 1 6767514 species 25287143 Variovorax 5 0 genus 0 1 34072 663243 no rank 0 2 11331389 species 0 1 Variovorax sp. PAMC 28711 4316152 1795631 species 1 Variovorax sp. PMC12 0 7015237 2126319 436515 1 Variovorax boronicumulans 0 7137898 species 34073 species 6817856 1 Variovorax paradoxus 0 genus 3358427 0 1 2678886 2116657 species 3358427 0 1 Melaminivora sp. SC2-7 0 Diaphorobacter 2 4061276 genus 0 238749 1 1 Diaphorobacter polyhydroxybutyrativorans 0 4061276 species 1546149 genus 5197249 0 2 2490452 1458425 Comamonadaceae bacterium A1 1 0 2574013 species species 0 Comamonadaceae bacterium B1 1 2623236 1458426 0 1 12916 37526257 9 Acidovorax 0 genus 80869 5351348 0 Acidovorax citrulli 1 species 80867 1 Acidovorax avenae 0 5482170 species 553814 species 4122625 0 Acidovorax sp. NA3 1 species 1 Acidovorax ebreus 0 3796573 721785 0 4 18773541 no rank 2684926 1 Acidovorax sp. RAC01 0 4574859 species 1842533 358220 5196935 0 1 Acidovorax sp. KKS102 species 1858609 Acidovorax sp. T1 1 0 4416593 species 232721 species 4585154 0 1 Acidovorax sp. JS42 0 1 352450 4154448 0 Simplicispira 2 genus 0 1 Simplicispira sp. SC1-8 4154448 species 2109915 201096 1 0 genus Alicycliphilus 2 0 4953232 0 Alicycliphilus denitrificans 1 4953232 species 179636 0 174951 1 0 2 Ramlibacter 4493411 genus 4493411 0 1 Ramlibacter tataouinensis species 94132 283 1 0 genus 0 Comamonas 4 13766059 species 4522913 Comamonas serinivorans 1 0 1082851 5695231 0 Comamonas testosteroni 1 species 285 225992 species Comamonas kerstersii 1 0 3547915 no rank 19 0 60407035 119065 16 0 47731227 no rank 224471 Rhizobacter 2 0 12796196 genus 0 212743 1 species 0 1 Rhizobacter gummiphilus 12796196 946333 genus 0 Roseateles 2 5681722 93681 1 0 5681722 1 Roseateles depolymerans 0 species 76731 genus 5043253 0 2 Rubrivivax 1 28067 0 28068 0 Rubrivivax gelatinosus 1 5043253 species 4643639 2 Methylibium 0 genus 0 1 316612 4643639 Methylibium petroleiphilum 1 0 species 105560 0 1 65047 6085092 2 Mitsuaria 0 genus 2648776 no rank 6085092 1 0 1658665 species 0 Mitsuaria sp. 7 1 6085092 318147 1 0 genus 0 Paucibacter 2 5169161 2642959 1 0 5169161 no rank 5169161 Paucibacter sp. KCTC 42545 1 0 species 1768242 genus Thiomonas 2 0 3402761 32012 1 0 926 species Thiomonas intermedia 1 0 3402761 1 88 0 genus 4909403 Leptothrix 2 0 34029 4909403 0 Leptothrix cholodnii 1 species 2 0 6199661 no rank 80841 species 2923112 1 Burkholderiales bacterium YL45 0 1834205 1469502 3276549 0 1 Burkholderiales bacterium GJ-E10 species 1 [Polyangium] brachysporum 0 6476147 species 413882 family Burkholderiaceae 85 0 765334108 119060 1 0 44013 8146284 0 3 genus 1835254 species 2026292 0 1 Polynucleobacter duraquae 576610 0 Polynucleobacter necessarius 1 1560469 species 576611 species 4559523 1 Polynucleobacter asymbioticus 0 genus 125184294 Paraburkholderia 13 0 1 1822464 0 2026199 0 Paraburkholderia aromaticivorans 1 8907716 species 311230 0 Paraburkholderia terrae 1 10062489 species species Paraburkholderia xenovorans 1 0 19434089 36873 no rank 2 0 15387765 2615204 species 1 Burkholderia sp. CCGE1002 0 7884858 640511 species 7502907 1 Paraburkholderia sp. SOS3 0 1926494 75105 species 1 Paraburkholderia caribensis 0 18433653 species 9058983 Paraburkholderia fungorum 1 0 134537 species Paraburkholderia phytofirmans 1 0 8214658 261302 8676562 0 1 Paraburkholderia phymatum species 148447 948107 0 Paraburkholderia sprentiae 1 7829542 species species 0 1 Paraburkholderia phenoliruptrix 7651131 252970 169430 species 11527706 1 Paraburkholderia hospita 0 1 32008 0 genus 433839671 Burkholderia 43 0 2613784 0 12 88882738 no rank 7253494 0 1 Burkholderia sp. CCGE1001 species 640510 1795874 species 6881273 0 1 Burkholderia sp. PAMC 28687 1097668 species 0 Burkholderia sp. YI23 1 8896411 species 1 Burkholderia sp. Bp7605 0 5705688 1740163 species Burkholderia sp. Bp5365 1 0 7287809 1740162 7285824 Burkholderia sp. 2002721687 1 0 species 1468409 1795043 0 1 Burkholderia sp. PAMC 26561 7431919 species 758796 8685756 1 Burkholderia sp. RPE67 0 species 7206167 0 Burkholderia sp. HB1 1 species 1678678 416344 species 0 1 Burkholderia sp. KJ006 6629912 7043595 1 Burkholderia sp. CCGE1003 0 species 640512 1804984 Burkholderia sp. OLGA172 1 0 8574890 species species 6964487 1 Burkholderia sp. RPE64 0 758793 8081051 0 Burkholderia plantarii 1 species 41899 111527 7 0 88833312 species group 342113 0 Burkholderia oklahomensis 1 7224347 species 13373 Burkholderia mallei 1 0 31986505 species 7081173 Burkholderia sp. MSMB0852 1 0 species 1637841 species 0 Burkholderia pseudomallei 1 17762618 28450 1637837 species 7427555 1 Burkholderia sp. MSMB0266 0 57975 species 10437316 0 1 Burkholderia thailandensis 1637831 species 0 1 Burkholderia sp. MSMB617WGS 6913798 species 7333967 1 Burkholderia glumae 0 337 0 19 222046194 species group 87882 87883 species 15803734 Burkholderia multivorans 1 0 152500 species 6409095 1 Burkholderia dolosa 0 60552 species 20583751 0 1 Burkholderia vietnamiensis 488732 species 6857833 0 Burkholderia diffusa 1 488446 6614478 1 Burkholderia latens 0 species 488729 species 7424240 0 1 Burkholderia metallica 0 Burkholderia contaminans 1 8509249 species 488447 292 species 17650414 0 Burkholderia cepacia 1 1 Burkholderia pyrrocinia 0 7961346 species 60550 482957 species 17031116 Burkholderia lata 1 0 101571 22281372 1 Burkholderia ubonensis 0 species 488731 species 1 Burkholderia seminalis 0 7648944 265293 7840830 0 1 [Pseudomonas] mesoacidophila species 1503054 7583807 Burkholderia stagnalis 1 0 species 152480 0 1 Burkholderia ambifaria 11349840 species 1503055 0 Burkholderia territorii 1 6902370 species 95485 species 16249051 Burkholderia stabilis 1 0 species 1 Burkholderia pseudomultivorans 0 7956789 1207504 95486 Burkholderia cenocepacia 1 0 19387935 species 28095 species 11697922 1 Burkholderia gladioli 0 2571159 genus 0 1 3750138 412963 0 1 Paraburkholderia rhizoxinica 3750138 species 91785158 0 10 Pandoraea genus 0 1 93217 93220 0 1 Pandoraea pnomenusa 13701639 species 93221 5867621 Pandoraea pulmonicola 1 0 species 445709 species 8928371 0 Pandoraea thiooxydans 1 species 11486120 0 Pandoraea sputorum 1 93222 93218 species 0 1 Pandoraea apista 27664360 species 6500731 Pandoraea oxalativorans 1 0 573737 656178 species 5736282 0 1 Pandoraea vervacti species 6167370 Pandoraea norimbergensis 1 0 93219 656179 5732664 1 Pandoraea faecigallinarum 0 species 0 1 48736 42022554 Ralstonia 5 0 genus 14666114 0 1 Ralstonia solanacearum species 305 species Ralstonia mannitolilytica 1 0 9915295 105219 329 species 5276379 1 Ralstonia pickettii 0 12164766 1 Ralstonia insidiosa 0 species 190721 0 106589 1 Cupriavidus 9 0 60606009 genus 82541 species 0 1 Cupriavidus gilardii 5578743 2640874 2 0 16519047 no rank 1389192 7820821 1 Cupriavidus sp. USMAHM13 0 species 0 Cupriavidus sp. USMAA2-4 1 8698226 species 876364 367825 0 1 Cupriavidus sp. USMAA1020 7949449 species species 6933230 0 Cupriavidus metallidurans 1 119219 68895 species Cupriavidus basilensis 1 0 8421483 7255290 0 Cupriavidus pinatubonensis 1 species 248026 7948767 Cupriavidus necator 1 0 species 106590 0 Oxalobacteraceae 28 138977877 family 0 75682 1 4 Collimonas 0 31787573 genus 0 202907 1 279113 11315924 0 Collimonas pratensis 1 species 279058 15078336 0 Collimonas arenae 1 species 5393313 Collimonas fungivorans 1 0 species 158899 genus 2451262 1 0 846 2451262 0 Oxalobacter formigenes 1 species 847 29580 1 0 genus Janthinobacterium 7 0 33802184 no rank 21579105 4 0 2610881 1236179 species 4726850 0 Janthinobacterium sp. B9-8 1 1644131 6453540 0 1 Janthinobacterium sp. 1_2014MBL_MicDiv species 1 Janthinobacterium sp. LM6 0 6288464 species 1938606 375286 species 4110251 0 Janthinobacterium sp. Marseille 1 368607 species 6274078 Janthinobacterium svalbardensis 1 0 5949001 1 Janthinobacterium agaricidamnosum 0 species 55508 149698 1 0 genus 0 6 Massilia 34019288 6337491 0 Massilia sp. ZMN-3 1 species 2072590 species 1 Massilia sp. B2 0 7530059 2045208 2609279 no rank 2 0 12628721 6267305 0 Massilia sp. WG5 1 species 1707785 species Massilia sp. NR 4-1 1 0 6361416 1678028 1141883 7523017 1 Massilia putida 0 species genus 0 6 Herbaspirillum 29708941 963 1 0 80842 5611261 Herbaspirillum rubrisubalbicans 1 0 species 341045 4965474 Herbaspirillum hiltneri 1 0 species no rank 5465798 1 0 2624150 5465798 Herbaspirillum sp. meg3 1 0 species 2025949 964 species 0 1 Herbaspirillum seropedicae 8221139 0 1 Herbaspirillum frisingense 5445269 species 92645 genus 7208629 3 Herminiimonas 0 1 303379 0 species 0 1 Herminiimonas arsenitoxidans 3784322 1809410 204773 1 Herminiimonas arsenicoxydans 0 3424307 species 0 32003 1 43 Nitrosomonadales 0 73458501 order 13 Methylophilaceae 0 20713816 family 0 32011 1 genus 5944398 0 Methylovorus 3 1 81682 0 2634027 2862391 0 1 no rank 887061 species 1 Methylovorus sp. MP688 0 2862391 266009 0 Methylovorus glucosotrophus 1 3082007 species 1679002 genus 0 2 3111416 1581557 species Candidatus Methylopumilus planktonicus 1 0 1356428 1581680 0 1 Candidatus Methylopumilus turicensis 1754988 species 3079044 0 Methylophilus 2 genus 0 1 16 2630143 no rank 1 0 3079044 species 3079044 0 Methylophilus sp. TWE2 1 1662285 5607441 0 3 Methylotenera genus 0 1 359407 species 1 Methylotenera mobilis 0 2547570 359408 1055487 species 3059871 0 1 Methylotenera versatilis 404 1 0 genus 2 Methylobacillus 0 2971517 405 0 1 Methylobacillus flagellatus 2971517 species 0 2008793 1 Sterolibacteriaceae 5 0 7739838 family 2 Methyloversatilis 0 3937190 genus 0 378210 1 2639971 no rank 1 0 3937190 1842540 species 1 Methyloversatilis sp. RAC08 0 3937190 genus Sulfuritalea 2 0 3802648 1054211 1 0 748811 3802648 0 Sulfuritalea hydrogenivorans 1 species 0 90627 1 Gallionellaceae 9 0 12299485 family 0 1 1778653 2916145 2 Sulfuriferula 0 genus 2637784 no rank 1 0 2916145 species 2916145 1 Sulfuriferula sp. AH1 0 1985873 0 314343 1 0 Sideroxydans 2 3003656 genus species 3003656 0 1 Sideroxydans lithotrophicus 63745 0 2 Gallionella 3162471 genus 0 96 1 370405 species 3162471 1 Gallionella capsiferriformans 0 0 Sulfuricella 2 3217213 genus 0 935200 1 species Sulfuricella denitrificans 1 0 3217213 649841 Thiobacillaceae 3 0 2909809 family 0 2008790 1 0 919 1 Thiobacillus 2 0 2909809 genus 36861 0 Thiobacillus denitrificans 1 2909809 species 206379 1 0 family Nitrosomonadaceae 12 0 29795553 7 Nitrosomonas 0 20090043 genus 0 914 1 2781824 1 Nitrosomonas eutropha 0 species 916 species 0 1 Nitrosomonas europaea 2812094 915 2609265 7120467 0 2 no rank 261292 species 3783444 0 1 Nitrosomonas sp. Is79A3 153948 species 1 Nitrosomonas sp. AL212 0 3337023 3307820 Nitrosomonas ureae 1 0 species 44577 44574 4067838 Nitrosomonas communis 1 0 species 1 35798 0 genus 9705510 0 4 Nitrosospira 0 1 Nitrosospira lacus 3261088 species 1288494 species 3234309 Nitrosospira multiformis 1 0 1231 species 1 Nitrosospira briensis 0 3210113 35799 68525 subphylum 195 0 503130272 137856712 Epsilonproteobacteria 69 0 class 0 1 29547 0 213849 1 0 Campylobacterales 61 129522169 order 0 1 72294 96610320 0 41 Campylobacteraceae family no rank 4 0 11306017 2321108 28196 genus 5491926 2 0 28197 0 1 Arcobacter butzleri 2299691 species species 3192235 Arcobacter nitrofigilis 1 0 28199 0 2 5814091 no rank 2321207 944547 species 1 Arcobacter sp. L 0 2947662 0 Arcobacter sp. LPB0137 1 2866429 species 1850254 0 1 194 63286766 Campylobacter 27 0 genus Campylobacter curvus 1 0 1971270 species 200 201 species 0 1 Campylobacter lari 1576113 198 0 1 Campylobacter hyointestinalis 1753331 species 1465081 Campylobacter insulaenigrae 1 0 species 260714 1594554 0 1 Campylobacter lanienae species 75658 1871495 1 Campylobacter helveticus 0 species 28898 197 species 1 Campylobacter jejuni 0 7998700 2593542 0 5 8159038 no rank 1500960 1557536 Campylobacter sp. RM16704 1 0 species 1 Campylobacter sp. RM6137 0 1640613 species 1660073 1754294 0 1 Campylobacter sp. RM8964 species 1660074 1660076 1 Campylobacter sp. RM12175 0 1612610 species 1593985 0 1 Campylobacter sp. NCTC 13003 species 1660064 4312881 1 Campylobacter pinnipediorum 0 species 1965231 species 5108357 0 Campylobacter iguaniorum 1 1244531 195 species 0 1 Campylobacter coli 7280491 374106 0 1 Campylobacter cuniculorum 1937768 species 1031542 0 1 Campylobacter volucris 1517949 species species 1 Campylobacter peloridis 0 1762793 488546 827 0 Campylobacter ureolyticus 1 1641887 species 522485 1738633 0 Campylobacter avium 1 species species 0 1 Campylobacter concisus 1969727 199 0 Campylobacter sputorum 1 1728969 species 206 824 species Campylobacter gracilis 1 0 2281652 76517 0 1 Campylobacter hominis 1714951 species species 0 Campylobacter subantarcticus 1 1817765 497724 species 2083361 0 1 Campylobacter fetus 196 0 1 57665 22017537 Sulfurospirillum 9 0 genus species 2510109 0 Sulfurospirillum barnesii 1 44674 194424 species 3029840 Sulfurospirillum halorespirans 1 0 2618290 8297185 0 3 no rank 1986224 species 0 Sulfurospirillum sp. SL2-1 1 2876536 220622 0 Sulfurospirillum sp. JPD-1 1 2814086 species species 0 1 Sulfurospirillum sp. UCH001 2606563 1581011 66821 0 Sulfurospirillum multivorans 1 3175729 species 65553 Sulfurospirillum deleyianum 1 0 2306351 species species 0 Sulfurospirillum cavolei 1 2698323 366522 438853 no rank 2101285 0 2 269260 1 0 genus 0 2 Nitratifractor 2101285 269261 2101285 Nitratifractor salsuginis 1 0 species 1 72293 0 family 30810564 0 Helicobacteraceae 17 1 209 0 genus 21526093 0 Helicobacter 12 217 0 Helicobacter mustelae 1 1578097 species 210 species 2877908 1 Helicobacter pylori 0 species 1 Helicobacter felis 0 1672681 214 1 0 1594790 no rank 2593540 222136 species 1594790 1 Helicobacter sp. MIT 01-6242 0 2620399 0 Helicobacter bilis 1 species 37372 species 1 Helicobacter cetorum 0 1903950 138563 1920832 0 1 Helicobacter typhlonius species 76936 0 Helicobacter acinonychis 1 1557588 species 212 species 1 Helicobacter hepaticus 0 1799146 32025 species 0 1 Helicobacter cinaedi 2170766 213 species 1829936 1 Helicobacter himalayensis 0 1591088 genus 1 0 2819357 286130 148813 0 Sulfuricurvum kujiense 1 2819357 species 202746 genus 0 2 4354759 39766 species 2201561 0 1 Sulfurimonas denitrificans 2153198 Sulfurimonas autotrophica 1 0 species 202747 genus 0 1 2110355 843 844 species 1 Wolinella succinogenes 0 2110355 order 0 2 1676444 235899 224467 1676444 0 2 family 0 1 191291 1676444 0 Nautilia 2 genus 244787 0 Nautilia profundicola 1 1676444 species 5 0 6658099 no rank 34035 0 1 269258 1877931 0 Nitratiruptor 2 genus 2624044 1 0 1877931 no rank species 1877931 0 Nitratiruptor sp. SB155-2 1 387092 265570 1 0 genus 3 Sulfurovum 0 4780168 206403 1 Sulfurovum lithotrophicum 0 2217891 species 2646778 2562277 0 1 no rank species Sulfurovum sp. NBC37-1 1 0 2562277 387093 126 Deltaproteobacteria 0 365273560 class 0 28221 1 29 1 0 order 38 Myxococcales 0 168069356 80811 suborder 0 26 122783078 1 1524215 0 family 15361026 0 Anaeromyxobacteraceae 5 genus Anaeromyxobacter 4 0 15361026 161492 1 0 0 2 10339622 no rank 2620896 404589 5277990 1 Anaeromyxobacter sp. Fw109-5 0 species 5061632 0 Anaeromyxobacter sp. K 1 species 447217 1 Anaeromyxobacter dehalogenans 0 5021404 species 161493 58061126 Myxococcaceae 9 0 family 0 1 31 0 1 32 47980507 0 Myxococcus 6 genus species 9139763 0 Myxococcus xanthus 1 34 species 10026214 0 1 Myxococcus fulvus 33 83455 Myxococcus stipitatus 1 0 10350586 species 8973512 0 1 Myxococcus macrosporus species 35 1297742 9490432 0 Myxococcus hansupus 1 species 10080619 2 Corallococcus 0 genus 0 1 83461 184914 1 Corallococcus coralloides 0 10080619 species family 4350553 0 Vulgatibacteraceae 3 1 1524213 0 1 1524214 0 genus 4350553 0 Vulgatibacter 2 1391653 4350553 Vulgatibacter incomptus 1 0 species 0 39 1 9 Archangiaceae 0 45010373 family 9910441 Melittangium 2 0 genus 0 1 44 83453 species Melittangium boletus 1 0 9910441 12349744 0 Cystobacter 2 genus 0 1 42 species 12349744 1 Cystobacter fuscus 0 43 Archangium 2 0 12489432 genus 0 47 1 48 species 0 1 Archangium gephyra 12489432 genus 0 Stigmatella 2 10260756 40 1 0 species 10260756 Stigmatella aurantiaca 1 0 41 8 0 35839964 suborder 80812 0 1 1055686 10327335 Sandaracinaceae 3 0 family 2 Sandaracinus 0 10327335 genus 0 1055688 1 species 10327335 0 1 Sandaracinus amylolyticus 927083 Polyangiaceae 5 0 25512629 family 0 49 1 1 50 0 genus 11388132 2 Chondromyces 0 52 11388132 1 Chondromyces crocatus 0 species 0 2 Sorangium 14124497 genus 0 39643 1 56 species 0 1 Sorangium cellulosum 14124497 suborder 3 0 9446314 224462 9446314 0 Kofleriaceae 3 family 0 1 224464 genus 9446314 0 Haliangium 2 1 162027 0 9446314 Haliangium ochraceum 1 0 species 80816 213113 5 0 3514422 order family Desulfurellaceae 5 0 3514422 117942 1 0 genus Desulfurella 2 0 1819992 33001 1 0 33002 1819992 Desulfurella acetivorans 1 0 species 0 Hippea 2 1694430 genus 0 84404 1 1694430 0 Hippea maritima 1 species 84405 213462 1 0 order 11 Syntrophobacterales 0 17979114 213468 1 0 family 7 Syntrophaceae 0 12988863 0 1 2357 6527027 2 Desulfomonile 0 genus 2358 species 1 Desulfomonile tiedjei 0 6527027 3282536 0 Desulfobacca 2 genus 0 1 60892 species 3282536 1 Desulfobacca acetoxidans 0 60893 1 43773 0 genus 3179300 2 Syntrophus 0 316277 3179300 Syntrophus aciditrophicus 1 0 species family Syntrophobacteraceae 3 0 4990251 213465 1 0 4990251 0 2 Syntrophobacter genus 0 1 29526 1 Syntrophobacter fumaroxidans 0 4990251 species 119484 0 1 213115 59204665 0 Desulfovibrionales 25 order 0 3 Desulfohalobiaceae 2909567 family 0 213117 1 45662 1 0 genus 0 2 Desulfohalobium 2909567 1 Desulfohalobium retbaense 0 2909567 species 45663 family 0 4 Desulfomicrobiaceae 6726031 213116 1 0 0 Desulfomicrobium 3 6726031 genus 0 898 1 132132 0 Desulfomicrobium orale 1 2783374 species species 0 1 Desulfomicrobium baculatum 3942657 899 0 1 194924 49569067 Desulfovibrionaceae 17 0 family genus 0 1 4200534 2582840 873 Desulfovibrio africanus 1 0 4200534 species 2035811 1 0 genus 0 Pseudodesulfovibrio 4 11813590 4217908 0 Pseudodesulfovibrio profundus 1 species 57320 1716143 species 3966573 0 1 Pseudodesulfovibrio indicus 182210 species 3629109 1 Pseudodesulfovibrio aespoeensis 0 31835840 Desulfovibrio 10 0 genus 0 1 872 44742 1 Desulfovibrio fairfieldensis 0 3699310 species 58180 0 1 Desulfovibrio alaskensis 3730232 species no rank 3414934 0 1 2593640 species 0 Desulfovibrio sp. G11 1 3414934 631220 species 0 Desulfovibrio salexigens 1 4289847 880 species 1 Desulfovibrio piger 0 2807531 901 881 3802302 0 1 Desulfovibrio vulgaris species species 1410056 1 Candidatus Desulfovibrio trichonymphae 0 1725232 184917 5315620 Desulfovibrio magneticus 1 0 species 876 species 0 1 Desulfovibrio desulfuricans 3366008 genus 1 0 1719103 41707 29546 species Lawsonia intracellularis 1 0 1719103 0 453227 1 0 Desulfarculales 4 3655731 order 453228 1 0 family 0 3 Desulfarculaceae 3655731 1 453229 0 genus 3655731 Desulfarculus 2 0 453230 species 0 1 Desulfarculus baarsii 3655731 order 43783628 Desulfobacterales 18 0 1 213118 0 213121 1 0 family Desulfobulbaceae 8 0 13555326 109168 3659634 0 1 genus species 0 Desulfotalea psychrophila 1 3659634 84980 0 2 Desulfobulbus 2774417 genus 0 893 1 1986146 0 Desulfobulbus sp. ORNL 1 2774417 species genus 4023512 0 Desulfocapsa 2 1 53318 0 65555 species 4023512 0 Desulfocapsa sulfexigens 1 2 Desulfurivibrio 0 3097763 genus 0 427922 1 427923 species 3097763 0 Desulfurivibrio alkaliphilus 1 1 213119 0 family 30228302 Desulfobacteraceae 9 0 genus 5657782 0 1 2295 species Desulfobacterium autotrophicum 1 0 5657782 2296 0 1 896 12855542 0 Desulfococcus 3 genus species 0 Desulfococcus multivorans 1 8911375 897 181663 3944167 0 1 Desulfococcus oleovorans species 28222 1 0 genus 2 Desulfobacula 0 5197905 28223 1 Desulfobacula toluolica 0 5197905 species 1 218207 0 genus 6517073 0 Desulfatibacillum 2 species Desulfatibacillum alkenivorans 1 0 6517073 259354 69066644 Desulfuromonadales 24 0 order 0 1 69541 22214802 0 Desulfuromonadaceae 9 family 0 1 213421 18 1 0 genus 5 Pelobacter 0 14331530 species 3206049 0 1 Pelobacter acetylenicus 29542 0 1 Pelobacter carbinolicus 3665893 species 19 species Pelobacter propionicus 1 0 4241119 29543 2620299 3218469 1 0 no rank 1842532 species 3218469 0 Pelobacter sp. SFB93 1 genus 7883272 0 Desulfuromonas 3 1 890 0 2614637 no rank 1 0 3924652 3924652 0 Desulfuromonas sp. DDH964 1 species 1823759 species 0 Desulfuromonas soudanensis 1 3958620 1603606 0 1 213422 46851842 Geobacteraceae 14 0 family 1 392332 0 genus 3717645 Geoalkalibacter 2 0 483547 3717645 0 Geoalkalibacter subterraneus 1 species 28231 1 0 genus 0 Geobacter 11 43134197 35554 species 3764200 0 1 Geobacter sulfurreducens 0 Geobacter lovleyi 1 3994874 species 313985 species 4304501 0 1 Geobacter daltonii 1203471 10023212 2 0 no rank 2627627 0 1 Geobacter sp. M18 5277406 species 443143 1 Geobacter sp. M21 0 4745806 species 443144 species 1 Geobacter metallireducens 0 4011182 28232 species 0 Geobacter anodireducens 1 3666014 1340425 4615150 1 Geobacter bemidjiensis 0 species 225194 species 3618700 0 1 Geobacter pickeringii 345632 351604 0 1 Geobacter uraniireducens 5136364 species 1807140 class 0 6 9208069 1 225057 0 order 9208069 Acidithiobacillales 6 0 0 225058 1 0 5 Acidithiobacillaceae 9208069 family 9208069 0 Acidithiobacillus 4 genus 0 1 119977 33059 3066800 Acidithiobacillus caldus 1 0 species species 3207552 1 Acidithiobacillus ferrivorans 0 160808 920 2933717 0 Acidithiobacillus ferrooxidans 1 species Alphaproteobacteria 562 0 1945287226 class 0 28211 1 82117 no rank 14437231 8 0 Micavibrio 2 0 2470296 genus 0 213485 1 species 0 Micavibrio aeruginosavorus 1 2470296 349221 1 991903 0 genus 4718963 Polymorphum 2 0 991904 Polymorphum gilvum 1 0 4718963 species 2 0 2753527 no rank 62654 0 767891 1 0 2 Candidatus Puniceispirillum 2753527 genus 1 Candidatus Puniceispirillum marinum 0 2753527 species 767892 1632780 1 0 genus 0 2 Phreatobacter 4494445 1868589 0 1 Phreatobacter sp. S-12 4494445 species 940996491 0 Rhizobiales 213 order 0 1 356 119042 0 6 14846354 no rank 0 1572860 1 0 2 Hartmannibacter 5449775 genus 5449775 Hartmannibacter diazotrophicus 1 0 species 1482074 genus Methyloceanibacter 2 0 3424964 1484898 1 0 0 1 Methyloceanibacter caenitepidi 3424964 species 1384459 0 1 1734920 5971615 Pseudorhodoplanes 2 0 genus Pseudorhodoplanes sinuspersici 1 0 5971615 species 1235591 69277 1 0 family 0 Phyllobacteriaceae 20 81378994 5119813 0 2 Hoeflea genus 0 1 274591 2614931 5119813 1 0 no rank 1620421 1 Hoeflea sp. IMCC20628 0 5119813 species 0 68287 1 0 Mesorhizobium 9 54867684 genus 381 0 1 Mesorhizobium loti 7481739 species 536018 0 Mesorhizobium australicum 1 6200534 species 71433 7343952 Mesorhizobium amorphae 1 0 species 39645 6838036 0 Mesorhizobium ciceri 1 species species 7596297 0 1 Mesorhizobium japonicum 2066070 325217 7198121 1 0 no rank 278153 species 0 Mesorhizobium sp. WSM1497 1 7198121 1670800 1 Mesorhizobium sp. B7 0 5324561 species 6884444 0 Mesorhizobium opportunistum 1 species 593909 0 1 28100 6208009 Phyllobacterium 2 0 genus 1867719 species 0 1 Phyllobacterium zundukense 6208009 1 31988 0 genus 6890726 0 Aminobacter 2 Aminobacter aminovorans 1 0 6890726 species 83263 0 Chelativorans 2 4935185 genus 0 449972 1 2643807 0 1 4935185 no rank 266779 4935185 Chelativorans sp. BNC1 1 0 species genus 3357577 2 Nitratireductor 0 1 245876 0 species 3357577 1 Nitratireductor basaltis 0 472175 0 31993 1 Methylocystaceae 6 0 13664848 family 0 425 1 0 Methylosinus 2 5183433 genus 426 species 0 Methylosinus trichosporium 1 5183433 0 133 1 0 3 Methylocystis 8481415 genus no rank 3773444 1 0 2625913 187303 3773444 0 Methylocystis sp. SC2 1 species 655015 species 4707971 0 1 Methylocystis bryophila family Brucellaceae 20 0 99942463 118882 1 0 0 1 234 78783526 0 Brucella 14 genus species 0 Brucella ceti 1 3278034 120577 236 3275590 1 Brucella ovis 0 species 120576 species 3365148 0 1 Brucella pinnipedialis 981386 0 1 Brucella vulpis 3238137 species 2632610 no rank 0 4 13753593 species 1 Brucella sp. 141012304 0 3442381 1885919 Brucella sp. 09RB8471 1 0 3434749 species 1149952 1891098 3283485 Brucella sp. 2002734562 1 0 species species 0 Brucella sp. 09RB8910 1 3592978 1844051 species 8796108 1 Brucella canis 0 36855 235 6200071 0 Brucella abortus 1 species 0 Brucella suis 1 7584916 species 29461 species 0 Brucella melitensis 1 25954560 29459 species Brucella microti 1 0 3337369 444163 1 528 0 genus 21158937 0 Ochrobactrum 5 271865 species Ochrobactrum sp. A44 1 0 5645291 571256 Ochrobactrum pituitosum 1 0 5467370 species species Ochrobactrum pseudogrignonense 1 0 4992805 419475 529 1 Ochrobactrum anthropi 0 5053471 species 0 1 41294 152918307 Bradyrhizobiaceae 27 0 family 8413615 0 Nitrobacter 3 genus 0 1 911 species Nitrobacter hamburgensis 1 0 5011522 912 species 3402093 0 1 Nitrobacter winogradskyi 913 1 1073 0 genus 6062656 0 Rhodopseudomonas 2 species Rhodopseudomonas palustris 1 0 6062656 1076 1 85413 0 genus 23682412 0 5 Bosea 2653178 0 3 16968864 no rank 1792307 1 Bosea sp. PAMC 26642 0 5510355 species 5620120 0 1 Bosea sp. RAC05 species 1842539 species 0 1 Bosea sp. AS-1 5838389 2015316 6713548 1 Bosea vaviloviae 0 species 1526658 4586237 0 Variibacter 2 genus 0 1 1649510 species 4586237 1 Variibacter gotjawalensis 0 1333996 40136 1 0 genus 0 2 Oligotropha 5740737 species 0 Oligotropha carboxidovorans 1 5740737 40137 genus 0 12 Bradyrhizobium 104432650 374 1 0 1274631 8322773 1 Bradyrhizobium icense 0 species 1355477 1 Bradyrhizobium diazoefficiens 0 18911792 species 44255 8264165 Bradyrhizobium oligotrophicum 1 0 species 54648799 7 0 no rank 2631580 335659 7231841 1 Bradyrhizobium sp. S23321 0 species 376 species Bradyrhizobium sp. 1 0 7547693 species 1 Bradyrhizobium sp. ORS 278 0 7456587 114615 7833499 Bradyrhizobium sp. CCGE-LA001 1 0 species 1223566 1 Bradyrhizobium sp. SK17 0 8288568 species 2057741 115808 7797098 Bradyrhizobium sp. ORS 285 1 0 species 0 Bradyrhizobium sp. BTAi1 1 8493513 species 288000 species 14285121 0 Bradyrhizobium japonicum 1 375 1 119043 0 family 3914745 3 Rhodobiaceae 0 0 2 Parvibaculum 3914745 genus 0 256616 1 256618 species 0 1 Parvibaculum lavamentivorans 3914745 7 Xanthobacteraceae 0 15759893 family 0 335928 1 0 152053 1 0 2 Starkeya 4765023 genus species 0 1 Starkeya novella 4765023 921 6 1 0 genus 0 2 Azorhizobium 5369772 7 species 5369772 1 Azorhizobium caulinodans 0 279 1 0 genus Xanthobacter 2 0 5625098 species 0 1 Xanthobacter autotrophicus 5625098 280 84039494 0 15 Methylobacteriaceae family 0 1 119045 9631051 0 Microvirga 2 genus 0 1 186650 1882682 9631051 0 1 Microvirga ossetica species 2282523 0 3 18713722 genus Methylobacterium populi 1 0 5896436 species 223967 species 1 Methylobacterium zatmanii 0 5612218 29429 408 7205068 0 Methylobacterium extorquens 1 species 55694721 9 Methylobacterium 0 genus 0 1 407 270351 7557960 0 Methylobacterium aquaticum 1 species 418223 0 1 Methylobacterium phyllosphaerae 6316624 species 6899110 0 Methylobacterium radiotolerans 1 species 31998 species 1 Methylobacterium oryzae 0 6286629 334852 species 8839022 0 1 Methylobacterium nodulans 114616 19795376 0 3 no rank 2615210 species 0 1 Methylobacterium sp. C1 6459145 1479019 species 5599206 0 1 Methylobacterium sp. AMS5 925818 Methylobacterium sp. 4-46 1 0 7737025 species 426117 0 1 2036754 9338908 0 Chelatococcaceae 4 family 28209 1 0 genus Chelatococcus 3 0 9338908 2638111 no rank 5243734 0 1 species Chelatococcus sp. CO-6 1 0 5243734 1702325 species 4095174 1 Chelatococcus daeguensis 0 444444 family Beijerinckiaceae 5 0 8724046 45404 1 0 0 120652 1 Methylocella 2 0 4305430 genus 199596 species 4305430 Methylocella silvestris 1 0 genus 4418616 Beijerinckia 2 0 1 532 0 species 4418616 Beijerinckia indica 1 0 533 20757268 0 Aurantimonadaceae 7 family 0 1 255475 genus 0 2 Aureimonas 5210858 414371 1 0 2615206 1 0 5210858 no rank species 0 1 Aureimonas sp. AU20 5210858 1349819 genus 15546410 0 4 Martelella 1 293088 0 5036008 0 1 no rank 2629616 species Martelella sp. AD-3 1 0 5036008 686597 293089 species 1 Martelella mediterranea 0 5693067 1486262 species 4817335 1 Martelella endophytica 0 family 0 Rhizobiaceae 55 337752445 82115 1 0 227292 63815838 0 10 no rank 1 28105 0 genus 50454309 Sinorhizobium 7 0 663276 species group 1 0 6844330 380 1 Sinorhizobium fredii 0 6844330 species species 16976189 1 Sinorhizobium meliloti 0 382 no rank 13013935 2 0 2613772 species 0 1 Sinorhizobium sp. CCBAU 05631 6387352 794846 0 1 Sinorhizobium sp. RAC02 6626583 species 1842534 194963 1 Sinorhizobium americanum 0 6802279 species species 6817576 Sinorhizobium medicae 1 0 110321 genus 13361529 3 Ensifer 0 1 106591 0 716925 species 6094027 Ensifer sojae 1 0 106592 species 7267502 Ensifer adhaerens 1 0 genus 0 Liberibacter 6 6695373 34019 1 0 556287 species Candidatus Liberibacter solanacearum 1 0 1258278 34020 species Candidatus Liberibacter africanus 1 0 1192232 species 1536273 0 Candidatus Liberibacter asiaticus 1 34021 1195201 Candidatus Liberibacter americanus 1 0 species 309868 species 0 Liberibacter crescens 1 1513389 1273132 323620 1 0 genus 0 Shinella 2 7354253 no rank 0 1 7354253 2643062 879274 Shinella sp. HZN7 1 0 7354253 species 36 0 259886981 no rank 227290 0 Neorhizobium 2 6434105 genus 0 1525371 1 1 Neorhizobium galegae 0 6434105 species 399 0 357 1 7 Agrobacterium 0 39852348 genus 1183400 17878601 0 2 species group 1176649 1 Agrobacterium fabrum 0 5674258 species Agrobacterium tumefaciens 1 0 12204343 species 358 species 6320946 0 Agrobacterium vitis 1 373 species 5114384 0 Agrobacterium rhizogenes 1 359 2632611 2 0 10538417 no rank species 5573770 Agrobacterium sp. H13-3 1 0 861208 species 0 1 Agrobacterium sp. RAC06 4964647 1842536 genus 0 Rhizobium 27 213600528 379 1 0 133653407 0 21 no rank 2613769 species 0 1 Rhizobium sp. S41 5524367 1869170 1703965 species 6424414 0 1 Rhizobium sp. N6212 species Rhizobium sp. N113 1 0 6524337 1703960 Rhizobium sp. N1341 1 0 6555560 species 1703962 1914541 5321211 1 Rhizobium sp. Y9 0 species 0 Rhizobium sp. TAL182 1 6402377 species 2020313 1571470 species 6284736 0 Rhizobium sp. ACO-34A 1 species Rhizobium sp. N1314 1 0 6274511 1703961 species 4577425 0 1 Rhizobium sp. NT-26 1125847 1301032 species 7057405 Rhizobium sp. IE4771 1 0 2020312 1 Rhizobium sp. CIAT894 0 6657947 species 7070317 0 1 Rhizobium sp. 10195 species 2028343 1981173 species 0 1 Rhizobium sp. NXC14 6686318 species 5464982 0 1 Rhizobium sp. IRBG74 424182 6425255 Rhizobium sp. N621 1 0 species 1703964 species 7302537 1 Rhizobium sp. NXC24 0 2048897 1703968 species 6479005 Rhizobium sp. N871 1 0 1703967 0 1 Rhizobium sp. N741 6556348 species 2020311 species Rhizobium sp. Kim5 1 0 6817255 species 6274507 0 1 Rhizobium sp. N731 1703966 1703969 species 0 Rhizobium sp. N324 1 6972593 398 0 Rhizobium tropici 1 6686334 species 29449 7953055 Rhizobium etli 1 0 species 384 0 Rhizobium leguminosarum 1 10661761 species 0 1 Rhizobium gallicum 7392696 species 56730 396 Rhizobium phaseoli 1 0 47253275 species 0 19 Hyphomicrobiaceae 61040173 family 0 45401 1 genus 0 Filomicrobium 2 7939883 119044 1 0 7939883 1 Candidatus Filomicrobium marinum 0 species 1608628 13633159 0 Devosia 4 genus 0 1 46913 13633159 0 3 no rank 196773 2083786 species 4005916 Devosia sp. I507 1 0 0 1 Devosia sp. A16 5032994 species 1736675 1643450 1 Devosia sp. H5989 0 4594249 species 0 29407 1 0 2 Rhodoplanes 8193889 genus no rank 1 0 8193889 2619116 8193889 0 Rhodoplanes sp. Z2-YC6860 1 species 674703 genus 12135193 Hyphomicrobium 4 0 1 81 0 1427356 species 3653837 0 Hyphomicrobium nitrativorans 1 53399 3723828 Hyphomicrobium denitrificans 1 0 species no rank 4757528 1 0 2619925 717785 species 0 1 Hyphomicrobium sp. MC1 4757528 1 59282 0 genus 11174693 0 Blastochloris 2 1079 11174693 0 Blastochloris viridis 1 species 1068 1 0 genus 0 Rhodomicrobium 2 4014469 4014469 Rhodomicrobium vannielii 1 0 species 1069 1082930 1 0 genus 2 Pelagibacterium 0 3948887 531813 0 1 Pelagibacterium halotolerans 3948887 species 0 772 1 0 Bartonellaceae 18 36918553 family 1 773 0 genus 36918553 0 Bartonella 17 4836370 0 Bartonella henselae 1 species 38323 774 species 1444215 0 Bartonella bacilliformis 1 0 1 Bartonella australis 1596490 species 388640 1318743 1 Bartonella ancashensis 0 1467695 species 2636792 1 Bartonella tribocorum 0 species 85701 1686310 species 0 Bartonella apis 1 8151641 803 species 1581384 Bartonella quintana 1 0 Bartonella clarridgeiae 1 0 1522743 species 56426 2645622 6 0 9509004 no rank 1933907 0 1 Bartonella sp. JB63 1493693 species species 1 Bartonella sp. A1379B 0 1541976 1933910 1933912 0 Bartonella sp. Raccoon60 1 1615700 species 1933906 1494018 1 Bartonella sp. JB15 0 species species 1762996 1 Bartonella sp. WD16.2 0 1933904 species 1600621 0 Bartonella sp. 1-1C 1 515256 Bartonella grahamii 1 0 2369520 species 33045 33047 species 0 1 Bartonella vinsonii 1802699 0 204457 1 Sphingomonadales 82 0 288275373 order family 0 Sphingomonadaceae 59 235599295 41297 1 0 0 1 1649486 5541299 2 Rhizorhabdus 0 genus species Rhizorhabdus dicambivorans 1 0 5541299 1850238 1 165696 0 genus 21922925 Novosphingobium 5 0 205844 species Novosphingobium pentaromativorans 1 0 5457578 158500 species 6918128 0 Novosphingobium resinovorum 1 no rank 0 1 5313905 2644732 5313905 Novosphingobium sp. PP1Y 1 0 species 702113 48935 1 Novosphingobium aromaticivorans 0 4233314 species 1434046 1 0 genus Sphingorhabdus 4 0 10880000 2614947 no rank 7400276 0 2 1806885 species 1 Sphingorhabdus sp. M41 0 3339521 2077182 species 0 Sphingorhabdus sp. YGSMI21 1 4060755 species 0 Sphingorhabdus flavimaris 1 3479724 266812 0 1 541 2378539 0 2 Zymomonas genus 1 Zymomonas mobilis 0 2378539 species 542 2685927 genus 1 0 3787976 1 Sphingomonas sp. JJ-A5 0 3787976 species 1921510 0 165697 1 10 Sphingopyxis 0 49744622 genus 0 1 Sphingopyxis terrae 3983415 species 33052 species 5202172 Sphingopyxis fribergensis 1 0 1515612 267128 species 4679853 Sphingopyxis granuli 1 0 117207 3373713 0 1 Sphingopyxis alaskensis species no rank 15705140 4 0 2614943 1357916 species 4285026 1 Sphingopyxis sp. QXT-31 0 292913 species 1 Sphingopyxis sp. 113P3 0 4664213 1913578 species Sphingopyxis sp. LPB0140 1 0 2533041 0 Sphingopyxis sp. MG 1 4222860 species 1866325 16800329 Sphingopyxis macrogoltabida 1 0 species 33050 0 Citromicrobium 2 3258499 genus 0 72173 1 no rank 3258499 1 0 2630544 1634516 1 Citromicrobium sp. JL477 0 3258499 species 0 2 Blastomonas 4403499 genus 0 150203 1 2626550 no rank 1 0 4403499 1842535 1 Blastomonas sp. RAC04 0 4403499 species 0 Sphingobium 15 65706118 genus 0 165695 1 2611147 no rank 29255248 0 6 species 1 Sphingobium sp. YBL2 0 5427419 484429 627192 species 0 1 Sphingobium sp. SYK-6 4348133 4261696 Sphingobium sp. EP60837 1 0 species 1855519 4619375 Sphingobium sp. MI1205 1 0 species 407020 1315974 species 6228879 0 Sphingobium sp. TKS 1 1843368 species 4369746 0 Sphingobium sp. RAC03 1 332056 species 4424862 0 Sphingobium japonicum 1 46429 species 0 1 Sphingobium chlorophenolicum 4573221 1673076 species 4602637 0 1 Sphingobium hydrophobicum 1332080 species Sphingobium baderi 1 0 4583422 5532633 0 Sphingobium yanoikuyae 1 species 13690 Sphingobium indicum 1 0 3945731 species 332055 76947 1 Sphingobium herbicidovorans 0 4240798 species 120107 1 Sphingobium cloacae 0 4547566 species 67975818 15 Sphingomonas 0 genus 0 1 13687 species 0 1 Sphingomonas hengshuiensis 5228389 1609977 1560345 species 0 1 Sphingomonas panacis 5322941 93064 species 4819238 1 Sphingomonas koreensis 0 3925065 1 Sphingomonas melonis 0 species 152682 species 2 Sphingomonas wittichii 0 12488598 160791 1 5915246 6573352 0 Sphingomonas sp. DC-6 1 no rank 1283312 397260 species 6580298 Sphingomonas sanxanigenens 1 0 196159 6 0 25549387 no rank 1 Sphingomonas sp. NIC1 0 3660563 species 1961362 1390395 1 Sphingomonas sp. LK11 0 3938206 species 1327635 5038478 1 Sphingomonas sp. Cra20 0 species species 0 Sphingomonas sp. LM7 1 4155514 1938607 0 1 Sphingomonas sp. MM-1 4633613 species 745310 1030157 1 Sphingomonas sp. KC8 0 4123013 species 4061902 0 Sphingomonas taxi 1 species 1549858 family Erythrobacteraceae 22 0 52676078 335929 1 0 0 4 Porphyrobacter 9348765 genus 0 1111 1 2683265 2 0 6258402 no rank 2023229 species Porphyrobacter HT-58-2 1 0 3279145 species 2979257 Porphyrobacter sp. LM 6 1 0 1896196 0 1 Porphyrobacter neustonensis 3090363 species 1112 1 1041 0 genus 15230165 6 Erythrobacter 0 2942673 Erythrobacter seohaensis 1 0 species 266951 2724951 1 Erythrobacter gangjinensis 0 species 502682 1648404 0 Erythrobacter atlanticus 1 3226359 species 39960 3151875 1 Erythrobacter litoralis 0 species 192812 species 3184307 0 1 Erythrobacter flavus 20124398 0 Altererythrobacter 8 genus 0 1 361177 692370 species 3009495 Altererythrobacter dongtanensis 1 0 species 3475106 1 Altererythrobacter atlanticus 0 1267766 species 1 Altererythrobacter namhicola 0 2591679 645517 1982042 species 0 Altererythrobacter mangrovi 1 2702851 1 Altererythrobacter epoxidivorans 0 2786256 species 361183 Altererythrobacter marensis 1 0 2885033 species 543877 476157 1 Altererythrobacter ishigakiensis 0 2673978 species 0 1 1295327 7972750 3 Croceicoccus 0 genus 450378 species 4109188 0 1 Croceicoccus marinus species 0 Croceicoccus naphthovorans 1 3863562 1348774 359429610 0 Rhodobacterales 102 order 0 1 204455 family 0 Hyphomonadaceae 8 14242006 69657 1 0 1 2723 0 genus 3540114 0 Hirschia 2 3540114 1 Hirschia baltica 0 species 2724 0 1 74317 3368780 0 2 Maricaulis genus 74318 species 3368780 0 1 Maricaulis maris genus 7333112 3 Hyphomonas 0 1 85 0 3705021 1 Hyphomonas neptunium 0 species 81032 no rank 1 0 3628091 2630699 0 Hyphomonas sp. Mor2 1 3628091 species 1906738 0 31989 1 0 Rhodobacteraceae 93 345187604 family 1649279 genus 4830028 1 0 379347 4830028 0 1 Ruegeria mobilis species 265 1 0 genus 0 Paracoccus 9 38521917 1 Paracoccus contaminans 0 3033494 species 1945662 species 3299166 Paracoccus sp. CBA4604 1 0 2065379 species 9449832 0 1 Paracoccus yeei 147645 246570 no rank 1 0 3954736 1529068 species 1 Paracoccus sp. BM15 0 3954736 266 species 0 Paracoccus denitrificans 1 5236194 0 Paracoccus aminovorans 1 4038130 species 34004 species 4637247 Paracoccus zhejiangensis 1 0 1077935 4873118 Paracoccus aminophilus 1 0 species 34003 1 354203 0 genus 5522061 Yangia 2 0 2645800 0 1 5522061 no rank 5522061 0 Yangia sp. CCB-MM3 1 species 1792508 0 4 Rhodovulum 15274702 genus 0 34008 1 species Rhodovulum sulfidophilum 1 0 6638597 35806 2631432 8636105 2 0 no rank species 4473545 0 Rhodovulum sp. P5 1 1564506 308754 Rhodovulum sp. MB263 1 0 4162560 species 1 1759396 0 genus 3147211 0 Marivivens 2 2622455 3147211 1 0 no rank 0 Marivivens sp. JLT3646 1 3147211 species 1920883 genus Pannonibacter 2 0 5669701 227873 1 0 0 Pannonibacter phragmitetus 1 5669701 species 121719 1 1284657 0 genus 3288122 Planktomarina 2 0 3288122 0 1 Planktomarina temperata species 1284658 0 1 74032 5331190 2 Antarctobacter 0 genus Antarctobacter heliothermus 1 0 5331190 species 74033 436357 genus 1 Thalassococcus 0 0 genus 4315457 Tateyamaria 2 0 1 299261 0 299262 0 1 Tateyamaria omphalii 4315457 species 4650996 0 Leisingera 2 genus 0 1 191028 133924 1 Leisingera methylohalidivorans 0 4650996 species 1 0 5424264 genus 263377 1229727 species 5424264 0 Thiobacimonas profunda 1 0 1 Loktanella 0 genus 245186 1097466 1 0 genus Defluviimonas 2 0 4987611 1335048 species 4987611 1 Defluviimonas alba 0 genus Sulfitobacter 3 0 9812612 60136 1 0 no rank 4691010 1 0 196795 species 0 1 Sulfitobacter sp. AM1-D1 4691010 1917485 1402135 1 Sulfitobacter pseudonitzschiae 0 5121602 species 1579315 4376120 0 1 genus 1579316 species Halocynthiibacter arcticus 1 0 4376120 genus 19020694 0 Rhodobacter 5 1 1060 0 3871920 Rhodobacter capsulatus 1 0 species 1061 no rank 2 0 8217942 196779 2033869 1 Rhodobacter sp. CZR27 0 4437113 species 1850250 species Rhodobacter sp. LPB0142 1 0 3780829 0 1 Rhodobacter sphaeroides 6930832 species 1063 6887280 0 2 no rank 58840 1 Rhodobacteraceae bacterium 0 3336108 species 1904441 2033435 3551172 1 Rhodobacteraceae bacterium QY30 0 species 4417868 0 Dinoroseobacter 2 genus 0 1 309512 215813 species 4417868 Dinoroseobacter shibae 1 0 genus 16180326 5 Celeribacter 0 1 875170 0 1411902 1 Celeribacter manganoxidans 0 3956796 species 1397108 3096705 0 Celeribacter marinus 1 species 4969388 0 1 Celeribacter indicus species 1208324 1758178 4157437 1 Celeribacter ethanolicus 0 species 0 1 2433 9065462 Roseobacter 3 0 genus 42443 species 4745450 1 Roseobacter litoralis 0 4320012 Roseobacter denitrificans 1 0 species 2434 0 Ketogulonicigenium 3 8016176 genus 0 92944 1 92945 1 Ketogulonicigenium vulgare 0 5302341 species 92947 species Ketogulonicigenium robustum 1 0 2713835 1 478070 0 genus 18679843 0 Labrenzia 4 187304 species 0 Labrenzia aggregata 1 6650994 2648686 2 0 12028849 no rank species 6051301 1 Labrenzia sp. CP4 0 1674922 species 1 Labrenzia sp. VG12 0 5977548 2021862 360528 1 0 genus 0 Pelagibaca 2 5259072 1250539 5259072 1 Pelagibaca abyssi 0 species 1 74030 0 genus 4381426 Roseovarius 2 0 215743 species 4381426 1 Roseovarius mucosus 0 2211641 3987360 0 1 genus species 0 1 Loktanella vestfoldensis 3987360 245188 188905 1 0 genus Jannaschia 2 0 4404049 2645469 4404049 1 0 no rank 290400 species Jannaschia sp. CCS1 1 0 4404049 0 1 1609958 4147426 0 2 Confluentimicrobium genus 4147426 0 1 no rank 2643318 1609966 Confluentimicrobium sp. EMB200-NS6 1 0 4147426 species 0 1 302485 80694174 0 5 Phaeobacter genus species 0 Phaeobacter inhibens 1 29116598 221822 species 17763019 0 Phaeobacter gallaeciensis 1 60890 1580596 species 29607336 0 1 Phaeobacter piscinae species 1 Phaeobacter porticola 0 4207221 1844006 genus 0 Ruegeria 3 8754747 97050 1 0 4601048 0 Ruegeria pomeroyi 1 species 89184 no rank 0 1 4153699 2625375 species Ruegeria sp. TM1040 1 0 4153699 292414 genus 4238255 0 2 Thioclava 1 285107 0 1915078 species 4238255 0 Thioclava nitratireducens 1 13618358 Octadecabacter 4 0 genus 0 1 53945 1458307 species 3264628 Octadecabacter temperatus 1 0 1217908 species 1 Octadecabacter antarcticus 0 4875481 53946 species Octadecabacter arcticus 1 0 5478249 genus Marinovum 2 0 5252390 367771 1 0 42444 species Marinovum algicola 1 0 5252390 2 Rhodobaca 0 3899419 genus 0 119541 1 441209 species 1 Rhodobaca barguzinensis 0 3899419 genus Sagittula 2 0 5576178 58842 1 0 2624628 0 1 5576178 no rank species 5576178 0 1 Sagittula sp. P11 2009329 0 1 159345 3555109 Roseibacterium 2 0 genus 159346 3555109 0 Roseibacterium elongatum 1 species 0 1 54526 6507017 Pelagibacterales 7 0 order family 5346815 0 5 Pelagibacteraceae 1 1655514 0 1655516 2753329 2 0 no rank species 1 alpha proteobacterium HIMB5 0 1343202 859653 1410127 1 alpha proteobacterium HIMB59 0 species 744985 198251 2593486 0 2 genus no rank 1 0 1284727 2647897 species Candidatus Pelagibacter sp. IMCC9063 1 0 1284727 1002672 198252 Candidatus Pelagibacter ubique 1 0 1308759 species 1160202 0 1 genus 2045213 1 Candidatus Fonsibacter ubiquis 0 1160202 species 1925548 5938599 6 0 order 1921002 1 0 1615277 family 44746 204454 no rank 1615277 1 0 86106 species 1 endosymbiont of Acanthamoeba sp. UWC8 0 1615277 0 2100208 1 0 Caedimonadaceae 3 1838212 family genus 1838212 0 2 Candidatus Nucleicultrix 1 1509243 0 Candidatus Nucleicultrix amoebiphila 1 0 1838212 species 1509244 0 1777752 1 Candidatus Paracaedibacteraceae 2 0 2485110 family 2485110 1 0 genus 1521255 species 2485110 0 1 Candidatus Paracaedibacter acanthamoebae 91604 0 1 204441 200317135 0 Rhodospirillales 67 order Acetobacteraceae 35 0 98804110 family 0 433 1 1 89583 0 genus 7914538 Gluconacetobacter 2 0 species 7914538 Gluconacetobacter diazotrophicus 1 0 33996 Komagataeibacter 5 0 14805599 genus 0 1434011 1 1 Komagataeibacter nataicola 0 3760301 species 265960 28448 species 0 1 Komagataeibacter xylinus 3734198 33995 species Komagataeibacter europaeus 1 0 3797909 1177712 Komagataeibacter medellinensis 1 0 3513191 species Acetobacter 8 0 25629230 genus 0 434 1 3923629 1 Acetobacter pasteurianus 0 species 438 species 3106397 0 1 Acetobacter oryzifermentans 1633874 3969909 0 1 Acetobacter senegalensis species 446692 104102 species 0 1 Acetobacter tropicalis 4139662 151157 subgenus 3725037 0 1 0 Acetobacter aceti 1 3725037 species 435 1076596 species 0 Acetobacter persici 1 3756676 65959 species 3007920 0 Acetobacter pomorum 1 3198265 0 2 Asaia genus 0 1 91914 3198265 0 Asaia bogorensis 1 species 91915 1602345 1 0 genus 0 Parasaccharibacter 2 2011634 1510841 Parasaccharibacter apium 1 0 2011634 species 0 Kozakia 2 6599181 genus 0 153497 1 153496 Kozakia baliensis 1 0 6599181 species 0 1 125216 10586672 0 Roseomonas 3 genus 257708 species 5412463 0 Roseomonas gilardii 1 2617492 no rank 1 0 5174209 2018065 species Roseomonas sp. FDAARGOS_362 1 0 5174209 0 320496 1 Neoasaia 2 0 3407860 genus species Neoasaia chiangmaiensis 1 0 3407860 320497 522 1 0 genus 3 Acidiphilium 0 8177824 Acidiphilium cryptum 1 0 3963080 species 524 62140 0 1 Acidiphilium multivorum 4214744 species genus 0 Gluconobacter 3 7407373 441 1 0 Gluconobacter albidus 1 0 3369297 species 318683 442 species 4038076 Gluconobacter oxydans 1 0 genus 9065934 2 Granulibacter 0 1 364409 0 1 Granulibacter bethesdensis 0 9065934 species 364410 family Rhodospirillaceae 31 0 101513025 41295 1 0 18737256 5 Magnetospirillum 0 genus 0 1 13134 84159 species 1 Magnetospirillum magneticum 0 4967148 9544350 0 2 no rank 2617991 1639348 species 4551873 0 Magnetospirillum sp. ME-1 1 4992477 1 Magnetospirillum sp. XM-1 0 species 1663591 55518 Magnetospirillum gryphiswaldense 1 0 4225758 species 0 1 1263978 1499913 2 Candidatus Endolissoclinum 0 genus 1263979 0 1 Candidatus Endolissoclinum faulkneri 1499913 species genus 3 Thalassospira 0 10207239 168934 1 0 species 4768950 Thalassospira xiamenensis 1 0 220697 2048283 species 5438289 1 Thalassospira sp. CSC3H3 0 genus Niveispirillum 2 0 6048780 1543704 1 0 species 6048780 1 Niveispirillum cyanobacteriorum 0 1612173 1612157 1 0 genus 0 Pararhodospirillum 2 3876289 1084 species 3876289 1 Pararhodospirillum photometricum 0 genus 2467625 Haematospirillum 2 0 1 1804663 0 2467625 0 Haematospirillum jordaniae 1 species 1549855 0 191 1 0 Azospirillum 5 31992950 genus 528244 0 Azospirillum thiophilum 1 7609458 species species 0 Azospirillum brasilense 1 13978806 192 3181617 0 1 Azospirillum humicireducens species 1226968 193 0 Azospirillum lipoferum 1 7223069 species genus Magnetospira 2 0 4052370 1182780 1 0 4052370 1 0 no rank 2685734 4052370 1 Magnetospira sp. QH-2 0 species 1288970 genus 8735234 0 3 Rhodospirillum 1 1081 0 1085 4379691 0 1 Rhodospirillum rubrum species 34018 0 1 Rhodospirillum centenum 4355543 species 1 1543705 0 genus 7382386 Nitrospirillum 2 0 Nitrospirillum amazonense 1 0 7382386 species 28077 2 Tistrella 0 6512983 genus 0 171436 1 171437 0 Tistrella mobilis 1 6512983 species 1 255473 0 order 2902643 Parvularculales 3 0 family 0 Parvularculaceae 2 2902643 255474 1 0 genus 0 1 2902643 208215 208216 2902643 Parvularcula bermudensis 1 0 species 0 Caulobacterales 20 58388066 order 0 204458 1 Caulobacteraceae 19 0 58388066 family 0 76892 1 75 1 0 genus 0 Caulobacter 6 25901111 species 0 1 Caulobacter henricii 3957288 69395 no rank 0 1 5889399 2648921 366602 0 1 Caulobacter sp. K31 5889399 species 88688 species 4655544 0 Caulobacter segnis 1 species 6821615 0 1 Caulobacter vibrioides 155892 4577265 Caulobacter mirabilis 1 0 species 69666 4379231 Phenylobacterium 2 0 genus 0 1 20 species 0 1 Phenylobacterium zucineum 4379231 284016 0 Asticcacaulis 2 4308776 genus 0 76890 1 4308776 0 1 Asticcacaulis excentricus species 78587 3732719 0 1 no rank 81440 1759059 species Caulobacteraceae bacterium OTSz_A_272 1 0 3732719 20066229 0 Brevundimonas 7 genus 0 1 41275 74313 species 3445263 0 Brevundimonas subvibrioides 1 588932 2971535 0 Brevundimonas naejangsanensis 1 species 3 0 10303904 no rank 2622653 1532555 species 3475610 0 1 Brevundimonas sp. DS20 3564519 Brevundimonas sp. LM2 1 0 species 1938605 0 1 Brevundimonas sp. GW460-12-10-14-LB2 3263775 species 1827469 41276 3345527 0 Brevundimonas vesicularis 1 species 0 Rickettsiales 51 63375480 order 0 766 1 1328881 1183732 1 0 family 411566 1183732 0 1 genus 234827 species 1183732 1 Candidatus Midichloria mitochondrii 0 1917564 1 0 no rank 210592 no rank 1917564 1 0 1699067 1528098 species 1917564 0 Rickettsiales bacterium Ac37b 1 21874809 0 Anaplasmataceae 23 family 0 1 942 1 768 0 genus 3900781 0 Anaplasma 4 769 1206806 0 1 Anaplasma centrale species 770 1200061 Anaplasma marginale 1 0 species species group 1 0 1493914 106179 species 1493914 0 Anaplasma phagocytophilum 1 948 genus 0 Neorickettsia 4 2623215 33993 1 0 species 879977 1 Neorickettsia risticii 0 950 33994 1 Neorickettsia helminthoeca 0 884232 species 859006 0 Neorickettsia sennetsu 1 species 951 943 1 0 genus 6 Ehrlichia 0 7099710 no rank 1148904 1 0 106181 391036 0 Ehrlichia sp. HF 1 1148904 species species group 4 0 5950806 106178 945 1174554 1 Ehrlichia chaffeensis 0 species 944 Ehrlichia canis 1 0 1314909 species species 0 Ehrlichia ruminantium 1 2264626 779 species 0 Ehrlichia muris 1 1196717 35795 952 tribe 8251103 0 8 genus 8251103 0 8 Wolbachia 1 953 0 77038 species 0 1 Wolbachia endosymbiont of Drosophila simulans 1288696 163164 species 1267782 0 1 Wolbachia endosymbiont of Drosophila melanogaster 1445873 0 1 no rank 2640676 0 1 Wolbachia sp. wRi 1445873 species 66084 77551 960618 Wolbachia endosymbiont of Onchocerca volvulus 1 0 species 1080084 Wolbachia endosymbiont of Brugia malayi 1 0 species 80849 100901 Wolbachia endosymbiont of Onchocerca ochengi 1 0 957990 species 246273 1250060 Wolbachia endosymbiont of Cimex lectularius 1 0 species 775 38399375 25 0 family 2115980 1 0 1472411 genus 2115978 Candidatus Phycorickettsia trachydisci 1 0 1472411 species 33988 0 24 36926964 tribe 1 780 0 genus 34858945 Rickettsia 22 0 1129742 species group 2698618 2 0 33990 1543618 1 Rickettsia bellii 0 species species 1 Rickettsia canadensis 0 1155000 788 species group 2 0 2223524 114292 species 1111249 1 Rickettsia prowazekii 0 782 785 species 1112275 0 Rickettsia typhi 1 16 0 28558185 species group 114277 1376184 0 1 Rickettsia massiliae species 35791 Rickettsia slovaca 1 0 1275404 species 35794 783 1392273 0 Rickettsia rickettsii 1 species 786 species 1231060 1 Rickettsia akari 0 33991 1279798 0 1 Rickettsia montanensis species 226665 1278471 0 Rickettsia heilongjiangensis 1 species 1 Rickettsia peacockii 0 1314898 species 47589 33989 2208986 0 1 Rickettsia amblyommatis species 1323280 0 1 Rickettsia australis species 787 1287740 1 Rickettsia philipii 0 species 1105106 species 1268755 1 Rickettsia conorii 0 781 109232 species 0 1 Rickettsia monacensis 1353450 33992 species 0 1 Rickettsia rhipicephali 1377049 42862 1587240 Rickettsia felis 1 0 species 0 1 Rickettsia parkeri 1300386 species 35792 7703211 0 1 Rickettsia japonica species 35790 no rank 1 0 1378618 114295 337479 species 1378618 0 Rickettsia endosymbiont of Bemisia tabaci 1 2 Orientia 0 2068019 genus 0 69474 1 0 Orientia tsutsugamushi 1 2068019 species 784 2 0 4719581 order 1191478 0 1191479 1 Magnetococcaceae 2 0 4719581 family 162171 genus 1 0 4719581 0 Magnetococcus marinus 1 4719581 species 1124597 1553900 7 0 14478399 class 0 213481 1 4 Bdellovibrionales 0 7252518 order 1 213483 0 family 7252518 0 3 Bdellovibrionaceae 7252518 0 2 genus 958 species Bdellovibrio exovorus 1 0 2657893 453816 Bdellovibrio bacteriovorus 1 0 4594625 species 959 2024979 order 7225881 0 3 0 1 263369 3810309 0 Bacteriovoracaceae 2 family 1 0 3810309 genus 146784 species 0 1 Bacteriovorax stolpii 3810309 960 1652132 0 1 3415572 family 1652133 genus 0 1 3415572 97084 3415572 0 1 Halobacteriovorax marinus species class 4839275 5 0 580370 order 0 Mariprofundales 5 4839275 580371 1 0 Mariprofundaceae 4 0 4839275 family 0 580372 1 4839275 0 3 Mariprofundus genus 0 1 377315 2537610 1 Mariprofundus aestuarium 0 species 1921086 1921087 1 Mariprofundus ferrinatatus 0 2301665 species 1783257 no rank 97 0 180819212 phylum 5242681 3 0 256845 0 1 1313211 5242681 0 3 Lentisphaeria class 5242681 2 Victivallales 0 order 0 1 278082 1674876 1 0 5242681 no rank species 5242681 Victivallales bacterium CCUG 44730 1 0 2094242 0 203682 1 Planctomycetes 40 0 100183872 phylum 85749433 Planctomycetia 28 0 class 0 1 203683 2691355 order 9045424 0 3 0 1914233 1 Gemmataceae 3 0 9045424 family 0 1 113 9045424 0 Gemmata 2 genus 2622970 0 1 9045424 no rank 1630693 species Gemmata sp. SH-PL17 1 0 9045424 2691354 18152526 6 0 order family 2 0 4810751 2691358 genus Thermogutta 2 0 4810751 1676125 1 0 1331910 species 0 1 Thermogutta terrifontis 4810751 family 13341775 4 0 2691357 0 1 123 6196199 0 2 Pirellula genus 125 0 Pirellula staleyi 1 6196199 species genus 0 2 Rhodopirellula 7145576 265488 1 0 265606 species 7145576 Rhodopirellula baltica 1 0 1 112 0 order 35614597 Planctomycetales 11 0 family 35614597 Planctomycetaceae 10 0 1 126 0 genus 8920478 0 2 Fuerstia 1 1936111 0 1891926 Fuerstia marisgermanicae 1 0 8920478 species genus Rubinisphaera 2 0 6006602 1649490 1 0 119 Rubinisphaera brasiliensis 1 0 6006602 species 0 Planctopirus 2 5460085 genus 0 1649480 1 species 5460085 1 Planctopirus limnophila 0 120 genus 15227432 0 Planctomyces 3 1 118 0 2648843 2 0 15227432 no rank 1636152 species 6784659 Planctomyces sp. SH-PL62 1 0 1632864 8442773 0 1 Planctomyces sp. SH-PL14 species 2691356 order 0 7 22936886 0 1 1763524 22936886 Isosphaeraceae 7 0 family 0 127 1 2 Isosphaera 0 5529304 genus species 1 Isosphaera pallida 0 5529304 128 0 1763521 1 Paludisphaera 2 0 7651896 genus 1387353 Paludisphaera borealis 1 0 7651896 species 0 466152 1 0 2 Singulisphaera 9755686 genus 466153 Singulisphaera acidiphila 1 0 9755686 species 1 666505 0 class 10028286 0 Phycisphaerae 7 3884382 0 Phycisphaerales 4 order 0 1 666506 0 Phycisphaeraceae 3 3884382 family 0 666507 1 0 1 666508 3884382 0 Phycisphaera 2 genus 547188 species 1 Phycisphaera mikurensis 0 3884382 2483366 0 2 6143904 order 6143904 2 0 family 2483367 2483368 2 0 6143904 genus 1940790 species 2951611 1 Phycisphaerae bacterium L21-RPul-D3 0 1941349 1 Phycisphaerae bacterium ST-PulAB-D4 0 3192293 species 2517206 class 4406153 0 4 order Candidatus Brocadiales 4 0 4406153 1127829 1 0 4406153 0 Candidatus Brocadiaceae 3 family 0 1 1127830 380738 1 0 genus Candidatus Kuenenia 2 0 4406153 species 4406153 1 Candidatus Kuenenia stuttgartiensis 0 174633 Verrucomicrobia 28 0 41515248 phylum 0 74201 1 12 Opitutae 0 21325333 class 0 414999 1 0 415000 1 Opitutales 7 0 17574562 order 0 1 134623 17574562 0 Opitutaceae 6 family no rank 7417673 1 0 278955 Opitutaceae bacterium TAV5 1 0 7417673 species 794903 1 1961799 0 genus 4199284 0 Lacunisphaera 2 1838286 species 0 Lacunisphaera limnophila 1 4199284 5957605 0 Opitutus 2 genus 0 1 178440 107709 species 5957605 Opitutus terrae 1 0 0 415001 1 0 Puniceicoccales 4 3750771 order family Puniceicoccaceae 3 0 3750771 415002 1 0 0 442430 1 0 2 Coraliomargarita 3750771 genus 0 1 Coraliomargarita akajimensis 3750771 species 395922 203494 class 0 5 5778768 5778768 0 5 Verrucomicrobiales order 0 1 48461 5778768 0 Akkermansiaceae 4 family 0 1 1647988 1 239934 0 genus 5778768 0 3 Akkermansia 1679444 3074078 0 1 Akkermansia glycaniphila species 239935 0 1 Akkermansia muciniphila 2704690 species 0 1955630 1 0 Methylacidiphilae 5 4763816 class 4763816 0 4 order 717963 1 717964 0 family 4763816 4 Methylacidiphilaceae 0 0 511745 1 0 Methylacidiphilum 3 4763816 genus Methylacidiphilum infernorum 1 0 2287145 species 511746 591154 species 2476671 1 Methylacidiphilum fumariolicum 0 326457 no rank 0 2 8731447 0 2 8731447 no rank 417295 1637999 species 0 Verrucomicrobia bacterium IMCC26134 1 4001000 0 1 Verrucomicrobia bacterium 4730447 species 2026799 0 1 134549 915884 0 3 Spartobacteria class genus 2 Candidatus Xiphinematobacter 0 915884 134550 1 0 2648876 no rank 915884 0 1 1704307 species Candidatus Xiphinematobacter sp. Idaho Grape 1 0 915884 phylum 2949723 0 5 134625 class 0 Kiritimatiellae 5 2949723 1921781 1 0 0 Kiritimatiellales 4 2949723 order 0 1921782 1 family 2949723 0 Kiritimatiellaceae 3 1 1921783 0 genus 2949723 0 Kiritimatiella 2 1 1921784 0 1307763 species 2949723 Kiritimatiella glycovorans 1 0 21 0 30927688 phylum 204428 1 204429 0 class 30927688 Chlamydiia 21 0 0 1963360 1 0 7 Parachlamydiales 10863038 order 92712 family 2628375 1 0 2628375 0 1 genus 34093 Simkania negevensis 1 0 2628375 species 83561 2131905 Waddliaceae 2 0 family 0 1 92714 2131905 0 1 genus 71666 71667 species 2131905 0 Waddlia chondrophila 1 0 1 92713 6102758 0 3 Parachlamydiaceae family 83551 3072383 1 0 genus 83552 3072383 0 Parachlamydia acanthamoebae 1 species genus 1 0 3030375 282132 0 Candidatus Protochlamydia naegleriophila 1 3030375 species 389348 51291 20064650 13 0 order 809 1 0 family Chlamydiaceae 13 0 20064650 no rank 20064650 12 0 1113537 810 1 0 genus 0 12 Chlamydia 20064650 1067108 Chlamydia gallinacea 1 0 species 1457153 1 Chlamydia avium 0 1048269 species 1457141 0 Chlamydia psittaci 1 1441799 species 83554 83557 species 1181356 Chlamydia caviae 1 0 85991 species 0 Chlamydia pecorum 1 1105923 83556 species 0 Chlamydia felis 1 1173791 83558 species 2706243 1 Chlamydia pneumoniae 0 1744976 Chlamydia trachomatis 1 0 species 813 species Chlamydia muridarum 1 0 4078723 83560 83559 0 1 Chlamydia suis 1083283 species 3433179 0 1 Chlamydia abortus species 83555