/usr/local/bin/quast.py -m 500 --no-icarus --min-identity 90.0 /expanse/projects/nmdc/cromwell/cromwell-executions/main_workflow/2ba5093b-b7b3-4e41-8b75-3a33be99568e/call-assembly_output/assembly_output/442036a4-b812-476c-bc32-b295cbc795dc/call-assembly_vis/attempt-2/inputs/-304795821/metag_1_contigs.fna -o /expanse/projects/nmdc/edge_app/test/nmdc-edge/io/projects/rNXOkOpGri4LgiMH/output/MetagenomeAssembly --labels metag_1_contigs

Version: 5.2.0

System information:
  OS: Linux-4.18.0-513.24.1.el8_9.x86_64-x86_64-with-glibc2.35 (linux_64)
  Python version: 3.10.12
  CPUs number: 128

Started: 2025-06-13 13:42:05

Logging to /expanse/projects/nmdc/edge_app/test/nmdc-edge/io/projects/rNXOkOpGri4LgiMH/output/MetagenomeAssembly/quast.log
NOTICE: Output directory already exists and looks like a QUAST output dir. Existing results can be reused (e.g. previously generated alignments)!
NOTICE: Maximum number of threads is set to 32 (use --threads option to set it manually)

CWD: /expanse/projects/nmdc/cromwell/cromwell-executions/main_workflow/2ba5093b-b7b3-4e41-8b75-3a33be99568e/call-assembly_output/assembly_output/442036a4-b812-476c-bc32-b295cbc795dc/call-assembly_vis/attempt-2/execution
Main parameters: 
  MODE: meta, threads: 32, min contig length: 500, min alignment length: 65, min alignment IDY: 90.0, \
  ambiguity: one, min local misassembly length: 200, min extensive misassembly length: 1000

Contigs:
  Pre-processing...
  /expanse/projects/nmdc/cromwell/cromwell-executions/main_workflow/2ba5093b-b7b3-4e41-8b75-3a33be99568e/call-assembly_output/assembly_output/442036a4-b812-476c-bc32-b295cbc795dc/call-assembly_vis/attempt-2/inputs/-304795821/metag_1_contigs.fna ==> metag_1_contigs

2025-06-13 13:42:06
Running Basic statistics processor...
  Contig files: 
    metag_1_contigs
  Calculating N50 and L50...
    metag_1_contigs, N50 = 120542, L50 = 27, auN = 511621.8, Total length = 21918156, GC % = 46.47, # N's per 100 kbp =  0.00
Done.

NOTICE: Genes are not predicted by default. Use --gene-finding or --glimmer option to enable it.

2025-06-13 13:42:07
Creating large visual summaries...
This may take a while: press Ctrl-C to skip this step..
Done

2025-06-13 13:42:07
RESULTS:
  Text versions of total report are saved to /expanse/projects/nmdc/edge_app/test/nmdc-edge/io/projects/rNXOkOpGri4LgiMH/output/MetagenomeAssembly/report.txt, report.tsv, and report.tex
  Text versions of transposed total report are saved to /expanse/projects/nmdc/edge_app/test/nmdc-edge/io/projects/rNXOkOpGri4LgiMH/output/MetagenomeAssembly/transposed_report.txt, transposed_report.tsv, and transposed_report.tex
  HTML version (interactive tables and plots) is saved to /expanse/projects/nmdc/edge_app/test/nmdc-edge/io/projects/rNXOkOpGri4LgiMH/output/MetagenomeAssembly/report.html
  Log is saved to /expanse/projects/nmdc/edge_app/test/nmdc-edge/io/projects/rNXOkOpGri4LgiMH/output/MetagenomeAssembly/quast.log

Finished: 2025-06-13 13:42:07
Elapsed time: 0:00:01.455417
NOTICEs: 3; WARNINGs: 0; non-fatal ERRORs: 0

Thank you for using QUAST!