LEVEL NAME TAXID READ_COUNT TOTAL_BP_MAPPED TOTAL_BP_MISMATCH LINEAR_LEN LINEAR_DOC ROLLUP_DOC REL_ABUNDANCE LINEAR_COV LINEAR_COV_MAPPED_SIG BEST_LINEAR_COV MAPPED_SIG_LENGTH TOL_SIG_LENGTH ABUNDANCE ZSCORE NOTE superkingdom Bacteria 2 36888 18143010 220300 7485726 2.423681 14.859161 1.000000 0.033945 0.847671 0.272491 8830936 220525118 14.859161 1.633965 phylum Bacillota 1239 14870 6068429 92869 2681805 2.262815 4.762909 0.320537 0.028595 0.826337 0.257791 3245414 93786041 4.762909 1.696794 phylum Pseudomonadota 1224 358 121381 543 100753 1.204738 4.620097 0.310926 0.019313 0.868388 0.272491 116023 5216813 4.620097 1.633965 phylum Bacteroidota 976 19765 10907610 101699 3871874 2.817140 4.047075 0.272362 0.068971 0.917763 0.193192 4218818 56137447 4.047075 2.043575 phylum Fusobacteriota 32066 258 29801 94 11835 2.518040 0.574628 0.038672 0.059771 0.979962 0.216911 12077 198006 0.574628 1.900046 phylum Actinomycetota 201174 312 181987 1914 124647 1.460019 0.481763 0.032422 0.028190 0.855463 0.129323 145707 4421651 0.481763 2.594719 phylum Verrucomicrobiota 74201 1325 833802 23181 694812 1.200040 0.372690 0.025081 0.011434 0.635753 0.068925 1092897 60765160 0.372690 3.675401 class Gammaproteobacteria 1236 358 121381 543 100753 1.204738 4.620097 0.310926 0.019313 0.868388 0.272491 116023 5216813 4.620097 1.633965 class Bacteroidia 200643 19765 10907610 101699 3871874 2.817140 4.047075 0.272362 0.068971 0.917763 0.193192 4218818 56137447 4.047075 2.043575 class Clostridia 186801 10675 4189424 67997 1868451 2.242191 2.774653 0.186730 0.040110 0.864328 0.257791 2161738 46582835 2.774653 1.696794 class Negativicutes 909932 3221 1153446 9592 187812 6.141493 1.508556 0.101524 0.119928 0.964974 0.200714 194629 1566045 1.508556 1.995550 class Fusobacteriia 203490 258 29801 94 11835 2.518040 0.574628 0.038672 0.059771 0.979962 0.216911 12077 198006 0.574628 1.900046 class Actinomycetes 1760 312 181987 1914 124647 1.460019 0.481763 0.032422 0.028190 0.855463 0.129323 145707 4421651 0.481763 2.594719 class Bacilli 91061 974 725559 15280 625542 1.159889 0.479699 0.032283 0.013707 0.703610 0.035365 889047 45637161 0.479699 5.222671 class Verrucomicrobiae 203494 1325 833802 23181 694812 1.200040 0.372690 0.025081 0.011434 0.635753 0.068925 1092897 60765160 0.372690 3.675401 order Enterobacterales 91347 358 121381 543 100753 1.204738 4.620097 0.310926 0.019313 0.868388 0.272491 116023 5216813 4.620097 1.633965 order Bacteroidales 171549 19765 10907610 101699 3871874 2.817140 4.047075 0.272362 0.068971 0.917763 0.193192 4218818 56137447 4.047075 2.043575 order Eubacteriales 186802 10675 4189424 67997 1868451 2.242191 2.774653 0.186730 0.040110 0.864328 0.257791 2161738 46582835 2.774653 1.696794 order Veillonellales 1843489 3221 1153446 9592 187812 6.141493 1.508556 0.101524 0.119928 0.964974 0.200714 194629 1566045 1.508556 1.995550 order Fusobacteriales 203491 258 29801 94 11835 2.518040 0.574628 0.038672 0.059771 0.979962 0.216911 12077 198006 0.574628 1.900046 order Bifidobacteriales 85004 312 181987 1914 124647 1.460019 0.481763 0.032422 0.028190 0.855463 0.129323 145707 4421651 0.481763 2.594719 order Lactobacillales 186826 974 725559 15280 625542 1.159889 0.479699 0.032283 0.013707 0.703610 0.035365 889047 45637161 0.479699 5.222671 order Verrucomicrobiales 48461 1325 833802 23181 694812 1.200040 0.372690 0.025081 0.011434 0.635753 0.068925 1092897 60765160 0.372690 3.675401 family Enterobacteriaceae 543 358 121381 543 100753 1.204738 4.620097 0.310926 0.019313 0.868388 0.272491 116023 5216813 4.620097 1.633965 family Bacteroidaceae 815 18270 9803838 97581 3455511 2.837160 3.534926 0.237895 0.064012 0.917415 0.148525 3766574 53982269 3.534926 2.394341 family Oscillospiraceae 216572 7919 2474566 36204 815292 3.035190 2.112233 0.142150 0.103609 0.898956 0.257791 906932 7868918 2.112233 1.696794 family Veillonellaceae 31977 3221 1153446 9592 187812 6.141493 1.508556 0.101524 0.119928 0.964974 0.200714 194629 1566045 1.508556 1.995550 family Fusobacteriaceae 203492 258 29801 94 11835 2.518040 0.574628 0.038672 0.059771 0.979962 0.216911 12077 198006 0.574628 1.900046 family Lachnospiraceae 186803 2162 1487895 28827 858824 1.732480 0.567129 0.038167 0.109102 0.827453 0.151600 1037913 7871751 0.567129 2.365649 family Prevotellaceae 171552 1495 1103772 4118 416363 2.650985 0.512149 0.034467 0.193192 0.920660 0.193192 452244 2155178 0.512149 2.043575 family Bifidobacteriaceae 31953 312 181987 1914 124647 1.460019 0.481763 0.032422 0.028190 0.855463 0.129323 145707 4421651 0.481763 2.594719 family Lactobacillaceae 33958 974 725559 15280 625542 1.159889 0.479699 0.032283 0.013707 0.703610 0.035365 889047 45637161 0.479699 5.222671 family Akkermansiaceae 1647988 1325 833802 23181 694812 1.200040 0.372690 0.025081 0.011434 0.635753 0.068925 1092897 60765160 0.372690 3.675401 family Peptostreptococcaceae 186804 594 226963 2966 194335 1.167896 0.095291 0.006413 0.006301 0.895995 0.007960 216893 30842166 0.095291 11.163635 genus Escherichia 561 354 120209 543 99581 1.207148 4.587495 0.308732 0.019630 0.867045 0.272491 114851 5073012 4.587495 1.633965 genus Bacteroides 816 18270 9803838 97581 3455511 2.837160 3.534926 0.237895 0.064012 0.917415 0.148525 3766574 53982269 3.534926 2.394341 genus Faecalibacterium 216851 7919 2474566 36204 815292 3.035190 2.112233 0.142150 0.103609 0.898956 0.257791 906932 7868918 2.112233 1.696794 genus Veillonella 29465 3221 1153446 9592 187812 6.141493 1.508556 0.101524 0.119928 0.964974 0.200714 194629 1566045 1.508556 1.995550 genus Fusobacterium 848 258 29801 94 11835 2.518040 0.574628 0.038672 0.059771 0.979962 0.216911 12077 198006 0.574628 1.900046 genus Roseburia 841 2162 1487895 28827 858824 1.732480 0.567129 0.038167 0.109102 0.827453 0.151600 1037913 7871751 0.567129 2.365649 genus Prevotella 838 1495 1103772 4118 416363 2.650985 0.512149 0.034467 0.193192 0.920660 0.193192 452244 2155178 0.512149 2.043575 genus Bifidobacterium 1678 312 181987 1914 124647 1.460019 0.481763 0.032422 0.028190 0.855463 0.129323 145707 4421651 0.481763 2.594719 genus Limosilactobacillus 2742598 974 725559 15280 625542 1.159889 0.479699 0.032283 0.013707 0.703610 0.035365 889047 45637161 0.479699 5.222671 genus Akkermansia 239934 1325 833802 23181 694812 1.200040 0.372690 0.025081 0.011434 0.635753 0.068925 1092897 60765160 0.372690 3.675401 genus Clostridioides 1870884 594 226963 2966 194335 1.167896 0.095291 0.006413 0.006301 0.895995 0.007960 216893 30842166 0.095291 11.163635 genus Salmonella 590 4 1172 0 1172 1.000000 0.032602 0.002194 0.008150 1.000000 0.008209 1172 143801 0.032602 10.991775 species Escherichia coli 562 354 120209 543 99581 1.207148 4.587495 0.308732 0.019630 0.867045 0.272491 114851 5073012 4.587495 1.633965 species Bacteroides fragilis 817 18270 9803838 97581 3455511 2.837160 3.534926 0.237895 0.064012 0.917415 0.148525 3766574 53982269 3.534926 2.394341 species Faecalibacterium prausnitzii 853 7919 2474566 36204 815292 3.035190 2.112233 0.142150 0.103609 0.898956 0.257791 906932 7868918 2.112233 1.696794 species Veillonella rogosae 423477 3221 1153446 9592 187812 6.141493 1.508556 0.101524 0.119928 0.964974 0.200714 194629 1566045 1.508556 1.995550 species Fusobacterium nucleatum 851 258 29801 94 11835 2.518040 0.574628 0.038672 0.059771 0.979962 0.216911 12077 198006 0.574628 1.900046 species Roseburia hominis 301301 2162 1487895 28827 858824 1.732480 0.567129 0.038167 0.109102 0.827453 0.151600 1037913 7871751 0.567129 2.365649 species Prevotella corporis 28128 1495 1103772 4118 416363 2.650985 0.512149 0.034467 0.193192 0.920660 0.193192 452244 2155178 0.512149 2.043575 species Bifidobacterium adolescentis 1680 312 181987 1914 124647 1.460019 0.481763 0.032422 0.028190 0.855463 0.129323 145707 4421651 0.481763 2.594719 species Limosilactobacillus fermentum 1613 974 725559 15280 625542 1.159889 0.479699 0.032283 0.013707 0.703610 0.035365 889047 45637161 0.479699 5.222671 species Akkermansia muciniphila 239935 1325 833802 23181 694812 1.200040 0.372690 0.025081 0.011434 0.635753 0.068925 1092897 60765160 0.372690 3.675401 species Clostridioides difficile 1496 594 226963 2966 194335 1.167896 0.095291 0.006413 0.006301 0.895995 0.007960 216893 30842166 0.095291 11.163635 species Salmonella enterica 28901 4 1172 0 1172 1.000000 0.032602 0.002194 0.008150 1.000000 0.008209 1172 143801 0.032602 10.991775 strain Veillonella rogosae strain=AC2811 AN NA 2 GCF_028743475.1 2591 938363 1318 151463 6.195328 1.243487 0.078421 0.200714 0.976444 0.200714 155117 754622 1.243487 1.995550 Not shown (strain-result biased); strain Faecalibacterium prausnitzii strain=AP34BHI GCF_028743395.1 3973 1358947 2017 310026 4.383332 1.129984 0.071263 0.257791 0.976346 0.257791 317537 1202625 1.129984 1.696794 Not shown (strain-result biased); strain Fusobacterium nucleatum strain=2/1/50A GCF_028743415.1 241 27461 20 11046 2.486058 0.539255 0.034008 0.216911 0.978995 0.216911 11283 50924 0.539255 1.900046 Not shown (strain-result biased); strain Prevotella corporis strain=OB21 FMU 4 GCF_028743775.1 1495 1103772 4118 416363 2.650985 0.512149 0.032299 0.193192 0.920660 0.193192 452244 2155178 0.512149 2.043575 Not shown (strain-result biased); strain Bacteroides fragilis strain=OB EAV1 11 D6 FAA GCF_028743275.1 2612 1487647 2356 465936 3.192814 0.474213 0.029906 0.148525 0.952254 0.148525 489298 3137085 0.474213 2.394341 Not shown (strain-result biased); strain Bacteroides fragilis NCTC 9343 strain=NCTC 9343 GCF_000025985.1 1889 1012035 9981 311335 3.250630 0.326751 0.020607 0.100519 0.936461 0.100519 332459 3097270 0.326751 2.991380 Not shown (strain-result biased); strain Bacteroides fragilis strain=S14 GCF_001682215.1 1813 951084 10749 313860 3.030281 0.309862 0.019541 0.102255 0.926417 0.102255 338789 3069381 0.309862 2.963015 Not shown (strain-result biased); strain Bacteroides fragilis strain=BE1 GCF_001286525.1 1727 907256 9886 304523 2.979269 0.284718 0.017956 0.095566 0.922791 0.095566 330002 3186507 0.284718 3.076350 Not shown (strain-result biased); strain Faecalibacterium prausnitzii strain=Fp77 GCF_019967995.1 1188 346412 8893 163233 2.122193 0.276446 0.017434 0.130264 0.861265 0.130264 189527 1253092 0.276446 2.583933 Not shown (strain-result biased); strain Bacteroides fragilis CL03T12C07 strain=CL03T12C07 GCF_018292185.1 1658 839381 8534 287966 2.914861 0.275528 0.017376 0.094525 0.921966 0.094525 312339 3046447 0.275528 3.095027 Not shown (strain-result biased); strain Escherichia coli W strain=W GCF_000184185.1 25 6600 4 3902 1.691440 0.274246 0.017295 0.162137 0.864422 0.162137 4514 24066 0.274246 2.273237 Not shown (strain-result biased); strain Escherichia coli strain=NEB_Turbo GCF_013167055.1 2 315 0 315 1.000000 0.272491 0.017185 0.272491 1.000000 0.272491 315 1156 0.272491 1.633965 Not shown (strain-result biased); strain Faecalibacterium prausnitzii strain=Fp40 GCF_019968035.1 1185 333029 10487 159881 2.082980 0.265352 0.016734 0.127391 0.860644 0.127391 185769 1255045 0.265352 2.617226 Not shown (strain-result biased); strain Veillonella rogosae strain=KCOM 3468 GCF_026057735.1 630 215083 8274 36349 5.917164 0.265069 0.016717 0.044797 0.919948 0.044797 39512 811423 0.265069 4.617696 Not shown (strain-result biased); strain Faecalibacterium prausnitzii strain=Fp45 GCF_019968015.1 1126 330895 9920 160223 2.065215 0.263756 0.016634 0.127713 0.851801 0.127713 188099 1254551 0.263756 2.613433 Not shown (strain-result biased); strain Roseburia hominis strain=OB EAV1 11 DCM GCF_028743455.1 910 666550 1059 397468 1.676990 0.254232 0.016033 0.151600 0.866153 0.151600 458889 2621817 0.254232 2.365649 Not shown (strain-result biased); strain Escherichia coli ATCC 8739 strain=ATCC 8739 GCF_000019385.1 14 3458 5 3260 1.060736 0.252833 0.015945 0.238356 0.850509 0.238356 3833 13677 0.252833 1.787568 Not shown (strain-result biased); strain Roseburia hominis A2-183 strain=A2-183 GCF_000225345.1 1033 657242 21469 369054 1.780883 0.250381 0.015790 0.140594 0.794015 0.140594 464795 2624967 0.250381 2.472386 Not shown (strain-result biased); strain Escherichia coli strain=B-3008 GCF_028743355.1 9 2882 5 2802 1.028551 0.210719 0.013289 0.204869 0.830222 0.204869 3375 13677 0.210719 1.970065 Not shown (strain-result biased); strain Bacteroides fragilis strain=FDAARGOS_1225 GCF_016889925.1 1152 616478 7788 214910 2.868540 0.203209 0.012815 0.070841 0.888462 0.070841 241890 3033715 0.203209 3.621631 Not shown (strain-result biased); strain Escherichia coli strain=B-766 GCF_028743755.1 19 5329 2 3448 1.545534 0.200038 0.012615 0.129429 0.921432 0.129429 3742 26640 0.200038 2.593495 Not shown (strain-result biased); strain Escherichia coli LY180 strain=LY180 GCF_000468515.1 11 2688 3 2587 1.039041 0.198362 0.012510 0.190908 0.827046 0.190908 3128 13551 0.198362 2.058668 Not shown (strain-result biased); strain Bifidobacterium adolescentis ATCC 15703 strain=ATCC 15703 GCF_000010425.1 94 62303 107 43061 1.446854 0.187112 0.011800 0.129323 0.903220 0.129323 47675 332972 0.187112 2.594719 Not shown (strain-result biased); strain Bacteroides fragilis strain=DCMOUH0042B GCF_000724795.2 951 544496 7412 189075 2.879788 0.178577 0.011262 0.062010 0.899411 0.062010 210221 3049086 0.178577 3.889258 Not shown (strain-result biased); strain Bifidobacterium adolescentis strain=LMG 10502 GCF_028743295.1 87 59285 98 40857 1.451037 0.178048 0.011229 0.122704 0.917187 0.122704 44546 332972 0.178048 2.673891 Not shown (strain-result biased); strain Bacteroides fragilis strain=BFG-1 GCF_020091565.1 1007 540790 4741 192731 2.805932 0.175872 0.011091 0.062679 0.924875 0.062679 208386 3074907 0.175872 3.867092 Not shown (strain-result biased); strain Bacteroides fragilis YCH46 strain=YCH46 GCF_000009925.1 924 499229 4518 176407 2.829984 0.159734 0.010074 0.056444 0.901521 0.056444 195677 3125370 0.159734 4.088620 Not shown (strain-result biased); strain Escherichia coli strain=SL112 GCF_009664185.1 6 2111 2 1494 1.412985 0.154403 0.009737 0.109274 0.799358 0.109274 1869 13672 0.154403 2.855043 Not shown (strain-result biased); strain Bacteroides fragilis strain=BOB25 GCF_000965785.1 893 458782 4892 165888 2.765613 0.146161 0.009218 0.052850 0.901727 0.052850 183967 3138872 0.146161 4.233395 Not shown (strain-result biased); strain Escherichia coli strain=B-1109 GCF_028743555.1 21 6794 10 5223 1.300785 0.144161 0.009092 0.110826 0.899122 0.110826 5809 47128 0.144161 2.832520 Not shown (strain-result biased); strain Escherichia coli strain=NCTC86 GCF_002007705.1 13 7719 13 6260 1.233067 0.136682 0.008620 0.110847 1.000000 0.110847 6260 56474 0.136682 2.832209 Not shown (strain-result biased); strain Bacteroides fragilis 638R strain=638R GCF_000210835.1 771 413626 4737 157052 2.633688 0.131596 0.008299 0.049966 0.879104 0.049966 178650 3143162 0.131596 4.360449 Not shown (strain-result biased); strain Escherichia coli strain=NEC12 GCF_022029995.1 1 537 0 537 1.000000 0.114646 0.007230 0.114646 1.000000 0.114646 537 4684 0.114646 2.778945 Not shown (strain-result biased); strain Bacteroides fragilis strain=CCUG4856T GCF_005706655.1 667 349831 3521 179027 1.954068 0.112950 0.007123 0.057803 0.895901 0.057803 199829 3097213 0.112950 4.037358 Not shown (strain-result biased); strain Bacteroides fragilis strain=FDAARGOS_1512 GCF_020097275.1 643 348736 3381 178671 1.951833 0.112747 0.007110 0.057765 0.916097 0.057765 195035 3093072 0.112747 4.038756 Not shown (strain-result biased); strain Escherichia coli strain=HBUT-L GCF_025369735.1 6 2085 2 2085 1.000000 0.111159 0.007010 0.111159 0.805019 0.111159 2590 18757 0.111159 2.827749 Not shown (strain-result biased); strain Escherichia coli VR50 strain=VR50 GCF_000968515.1 5 4654 6 3438 1.353694 0.110746 0.006984 0.081810 1.000000 0.081810 3438 42024 0.110746 3.350132 Not shown (strain-result biased); strain Escherichia coli strain=PK8568 GCF_019428645.1 3 1446 3 482 3.000000 0.100753 0.006354 0.033584 1.000000 0.033584 482 14352 0.100753 5.364320 Not shown (strain-result biased); strain Akkermansia muciniphila ATCC BAA-835 strain=ATCC BAA-835 GCF_000020225.1 377 197623 8969 148905 1.327175 0.091475 0.005769 0.068925 0.630086 0.068925 236325 2160399 0.091475 3.675401 Not shown (strain-result biased); strain Escherichia coli strain=ER2683 GCF_022591215.1 1 105 0 105 1.000000 0.090830 0.005728 0.090830 1.000000 0.090830 105 1156 0.090830 3.163783 Not shown (strain-result biased); strain Escherichia coli strain=JM109 GCF_028743375.1 1 105 0 105 1.000000 0.090830 0.005728 0.090830 1.000000 0.090830 105 1156 0.090830 3.163783 Not shown (strain-result biased); strain Bacteroides fragilis strain=DH4096B GCF_025916355.1 457 253786 3152 96489 2.630207 0.084813 0.005349 0.032246 0.919135 0.032246 104978 2992295 0.084813 5.478300 Not shown (strain-result biased); strain Escherichia coli strain=S21 GCF_001900925.1 3 1519 3 902 1.684035 0.083169 0.005245 0.049387 1.000000 0.049387 902 18264 0.083169 4.387293 Not shown (strain-result biased); strain Escherichia coli strain=Ecol_AZ147 GCF_002012105.1 2 236 0 118 2.000000 0.081044 0.005111 0.040522 1.000000 0.040522 118 2912 0.081044 4.866001 Not shown (strain-result biased); strain Bacteroides fragilis strain=DCMOUH0085B GCF_000724815.2 48 34909 859 15678 2.226623 0.078528 0.004952 0.035268 0.973728 0.035268 16101 444541 0.078528 5.230148 Not shown (strain-result biased); strain Escherichia coli strain=AQ15 GCF_009664205.1 6 1114 1 1114 1.000000 0.076328 0.004814 0.076328 0.790071 0.076328 1410 14595 0.076328 3.478712 Not shown (strain-result biased); strain Bacteroides fragilis strain=DCMOUH0017B GCF_000710375.2 82 48758 1887 14620 3.335021 0.072729 0.004587 0.021808 0.956243 0.021808 15289 670403 0.072729 6.697402 Not shown (strain-result biased); strain Bacteroides fragilis strain=IHMA_4 GCF_021359565.1 37 28607 887 12620 2.266799 0.070053 0.004418 0.030904 0.882147 0.030904 14306 408361 0.070053 5.599843 Not shown (strain-result biased); strain Escherichia coli KLY strain=KLY GCF_000725305.1 4 435 0 375 1.160000 0.064521 0.004069 0.055621 1.000000 0.055621 375 6742 0.064521 4.120518 Not shown (strain-result biased); strain Bacteroides fragilis strain=IHMA_13 GCF_021359585.1 60 33517 742 10863 3.085428 0.063314 0.003993 0.020520 0.950810 0.020520 11425 529375 0.063314 6.908830 Not shown (strain-result biased); strain Roseburia hominis MGYG-HGUT-02517 GCF_902387955.1 219 164103 6299 92302 1.777892 0.062516 0.003943 0.035163 0.808043 0.035163 114229 2624967 0.062516 5.238215 Not shown (strain-result biased); strain Escherichia coli strain=hubt-sl GCF_025244625.1 3 1063 2 1063 1.000000 0.062284 0.003928 0.062284 0.704907 0.062284 1508 17067 0.062284 3.880142 Not shown (strain-result biased); strain Faecalibacterium prausnitzii SL3/3 strain=SL3/3 GCF_000209855.1 74 25064 1437 5363 4.673504 0.061864 0.003901 0.013237 0.807802 0.013237 6639 405150 0.061864 8.633968 Not shown (strain-result biased); strain Escherichia coli strain=S171-1 GCF_022369175.1 2 932 0 932 1.000000 0.059427 0.003748 0.059427 1.000000 0.059427 932 15683 0.059427 3.978348 Not shown (strain-result biased); strain Bacteroides fragilis strain=86-5443-2-2 GCF_023702735.1 334 171440 2274 63391 2.704485 0.054268 0.003422 0.020066 0.920912 0.020066 68835 3159162 0.054268 6.988285 Not shown (strain-result biased); strain Bacteroides fragilis strain=GUT04 GCF_008369705.1 341 172850 2030 73180 2.361984 0.052731 0.003326 0.022325 0.879536 0.022325 83203 3277936 0.052731 6.617612 Not shown (strain-result biased); strain Akkermansia muciniphila strain=OB21 FAA NB 28 GCF_028743255.1 168 115881 292 93553 1.238667 0.050114 0.003160 0.040458 0.714390 0.040458 130955 2312359 0.050114 4.870021 Not shown (strain-result biased); strain Escherichia coli strain=CFSAN061761 GCF_003399845.2 6 2254 7 1279 1.762314 0.049679 0.003133 0.028190 0.989172 0.028190 1293 45371 0.049679 5.871440 Not shown (strain-result biased); strain Escherichia coli strain=38 GCF_010365545.1 1 436 1 436 1.000000 0.048912 0.003085 0.048912 1.000000 0.048912 436 8914 0.048912 4.409643 Not shown (strain-result biased); strain Bacteroides fragilis strain=DK1985 GCF_016864615.1 55 25971 788 9378 2.769354 0.047155 0.002974 0.017027 0.878666 0.017027 10673 550759 0.047155 7.597949 Not shown (strain-result biased); strain Escherichia coli strain=IPCEC31 GCF_026001065.1 1 1037 0 1037 1.000000 0.046895 0.002957 0.046895 1.000000 0.046895 1037 22113 0.046895 4.508216 Not shown (strain-result biased); strain Bacteroides fragilis strain=DCMOUH0067B GCF_000724805.2 34 18069 1050 4999 3.614523 0.046262 0.002918 0.012799 0.880726 0.012799 5676 390576 0.046262 8.782416 Not shown (strain-result biased); strain Escherichia coli strain=2013C-4991 GCF_003018815.1 4 2397 2 1026 2.336257 0.046194 0.002913 0.019773 1.000000 0.019773 1026 51890 0.046194 7.040955 Not shown (strain-result biased); strain Bacteroides fragilis strain=Q1F2 GCF_002849695.1 82 29626 603 10607 2.793061 0.045896 0.002894 0.016432 0.889625 0.016432 11923 645500 0.045896 7.736668 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=B-1840 GCF_028743095.1 85 66528 117 51500 1.291806 0.045685 0.002881 0.035365 0.786836 0.035365 65452 1456229 0.045685 5.222671 Not shown (strain-result biased); strain Escherichia coli strain=B-2207 GCF_028743335.1 9 2525 7 2016 1.252480 0.044581 0.002811 0.035594 1.000000 0.035594 2016 56639 0.044581 5.205261 Not shown (strain-result biased); strain Escherichia coli strain=AH62 GCF_013371745.1 1 436 1 436 1.000000 0.044377 0.002799 0.044377 1.000000 0.044377 436 9825 0.044377 4.640518 Not shown (strain-result biased); strain Escherichia coli strain=2018-18.25PC GCF_016592875.1 1 1071 0 1071 1.000000 0.044011 0.002776 0.044011 0.948627 0.044011 1129 24335 0.044011 4.660660 Not shown (strain-result biased); strain Faecalibacterium prausnitzii strain=942/30-2 GCF_003293635.1 179 40124 1351 6978 5.750072 0.041218 0.002599 0.007168 0.905646 0.007168 7705 973470 0.041218 11.768840 Not shown (strain-result biased); strain Escherichia coli KO11FL strain=KO11FL GCF_000258025.1 3 765 0 765 1.000000 0.041012 0.002586 0.041012 1.000000 0.041012 765 18653 0.041012 4.835598 Not shown (strain-result biased); strain Escherichia coli strain=CFS3246 GCF_009866925.2 1 537 0 537 1.000000 0.037932 0.002392 0.037932 1.000000 0.037932 537 14157 0.037932 5.036182 Not shown (strain-result biased); strain Escherichia coli strain=A27 GCF_022493375.1 1 157 0 157 1.000000 0.037002 0.002334 0.037002 1.000000 0.037002 157 4243 0.037002 5.101517 Not shown (strain-result biased); strain Escherichia coli strain=CV839-06 GCF_002893905.2 1 757 66 757 1.000000 0.035856 0.002261 0.035856 0.914251 0.035856 828 21112 0.035856 5.185464 Not shown (strain-result biased); strain Limosilactobacillus fermentum 3872 strain=3872 GCF_000466785.3 84 57419 522 47196 1.216607 0.035330 0.002228 0.029040 0.718247 0.029040 65710 1625197 0.035330 5.782306 Not shown (strain-result biased); strain Escherichia coli strain=BR1220 GCF_022569415.1 4 3196 5 2335 1.368737 0.034106 0.002151 0.024918 0.892243 0.024918 2617 93707 0.034106 6.255516 Not shown (strain-result biased); strain Escherichia coli strain=LH13-b GCF_024225435.1 1 1022 64 1022 1.000000 0.033552 0.002116 0.033552 0.712195 0.033552 1435 30460 0.033552 5.366964 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=LfQi6 GCF_000966835.2 67 44513 742 34853 1.277164 0.032704 0.002062 0.025607 0.631933 0.025607 55153 1361092 0.032704 6.168660 Not shown (strain-result biased); strain Escherichia coli strain=20-20 GCF_029854535.1 2 527 1 527 1.000000 0.032702 0.002062 0.032702 1.000000 0.032702 527 16115 0.032702 5.438635 Not shown (strain-result biased); strain Escherichia coli strain=YJ1 GCF_013374255.1 1 436 1 436 1.000000 0.032014 0.002019 0.032014 1.000000 0.032014 436 13619 0.032014 5.498749 Not shown (strain-result biased); strain Escherichia coli K-12 strain=K-12 C3026 GCF_001559675.1 1 210 0 210 1.000000 0.031148 0.001964 0.031148 1.000000 0.031148 210 6742 0.031148 5.577164 Not shown (strain-result biased); strain Escherichia coli strain=WP5-S17-ESBL-11 GCF_014160155.1 1 411 0 411 1.000000 0.030192 0.001904 0.030192 1.000000 0.030192 411 13613 0.030192 5.667597 Not shown (strain-result biased); strain Bifidobacterium adolescentis strain=1-11 GCF_003030905.1 31 13863 444 9916 1.398044 0.029791 0.001879 0.021309 0.730138 0.021309 13581 465339 0.029791 6.777027 Not shown (strain-result biased); strain Escherichia coli O104:H4 str. 2009EL-2071 strain=2009EL-2071 GCF_000299475.1 4 1842 4 1488 1.237903 0.029171 0.001840 0.023565 0.755714 0.023565 1969 63144 0.029171 6.437040 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=FTDC 8312 GCF_002119645.1 61 44142 1610 37523 1.176398 0.028583 0.001803 0.024297 0.632936 0.024297 59284 1544334 0.028583 6.336955 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=DSM 20052 GCF_013394085.1 48 41365 47 34981 1.182499 0.028310 0.001785 0.023941 0.795457 0.023941 43976 1461163 0.028310 6.385154 Not shown (strain-result biased); strain Escherichia coli strain=ECONIH1 GCF_000784925.1 15 2897 18 1705 1.699120 0.027917 0.001761 0.016430 0.758452 0.016430 2248 103771 0.027917 7.737103 Not shown (strain-result biased); strain Faecalibacterium prausnitzii L2-6 strain=L2/6 GCF_000210735.1 134 30514 1842 6309 4.836583 0.027522 0.001736 0.005690 0.757474 0.005690 8329 1108727 0.027522 13.218826 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=B1 28 GCF_005341425.1 45 39750 41 36054 1.102513 0.027296 0.001721 0.024758 0.821987 0.024758 43862 1456268 0.027296 6.276249 Not shown (strain-result biased); strain Bacteroides fragilis strain=FDAARGOS_763 GCF_013267555.1 33 16934 813 6305 2.685805 0.027257 0.001719 0.010149 0.827102 0.010149 7623 621274 0.027257 9.876068 Not shown (strain-result biased); strain Faecalibacterium prausnitzii strain=Fp1 GCF_019968075.1 34 5623 171 1624 3.462438 0.027208 0.001716 0.007858 0.985437 0.007858 1648 206670 0.027208 11.236541 Not shown (strain-result biased); strain Escherichia coli O104:H4 str. 2009EL-2050 strain=2009EL-2050 GCF_000299255.1 5 1715 1 1653 1.037508 0.026688 0.001683 0.025724 0.786768 0.025724 2101 64260 0.026688 6.154248 Not shown (strain-result biased); strain Bifidobacterium adolescentis strain=22L GCF_000737885.1 30 13670 407 8633 1.583459 0.026369 0.001663 0.016653 0.663924 0.016653 13003 518419 0.026369 7.684455 Not shown (strain-result biased); strain Limosilactobacillus fermentum IFO 3956 strain=IFO 3956 GCF_000010145.1 44 37540 514 35925 1.044955 0.024330 0.001534 0.023284 0.849994 0.023284 42265 1542925 0.024330 6.476766 Not shown (strain-result biased); strain Escherichia coli O104:H4 str. 2011C-3493 strain=2011C-3493 GCF_000299455.1 2 1521 0 1521 1.000000 0.023529 0.001484 0.023529 1.000000 0.023529 1521 64643 0.023529 6.442075 Not shown (strain-result biased); strain Escherichia coli strain=EC5502 GCF_022453585.1 3 303 0 101 3.000000 0.023306 0.001470 0.007769 1.000000 0.007769 101 13001 0.023306 11.301450 Not shown (strain-result biased); strain Escherichia coli strain=13TMH22 GCF_002951755.1 1 760 49 760 1.000000 0.023106 0.001457 0.023106 0.649018 0.023106 1171 32892 0.023106 6.502226 Not shown (strain-result biased); strain Escherichia coli strain=RIVM_C019217 GCF_020971745.1 4 2399 5 1248 1.922276 0.023094 0.001456 0.012014 1.000000 0.012014 1248 103882 0.023094 9.068560 Not shown (strain-result biased); strain Limosilactobacillus fermentum F-6 strain=F-6 GCF_000397165.1 50 33907 1896 29723 1.140766 0.022525 0.001421 0.019745 0.669693 0.019745 44383 1505308 0.022525 7.045889 Not shown (strain-result biased); strain Escherichia coli E110019 strain=E110019 GCF_000167875.2 2 1079 6 908 1.188326 0.022424 0.001414 0.018870 1.000000 0.018870 908 48119 0.022424 7.210721 Not shown (strain-result biased); strain Escherichia coli strain=51008369SK1 GCF_003254065.1 1 156 0 156 1.000000 0.022340 0.001409 0.022340 1.000000 0.022340 156 6983 0.022340 6.615347 Not shown (strain-result biased); strain Fusobacterium nucleatum strain=Fn12230 GCF_013137915.1 11 887 0 232 3.823276 0.021690 0.001368 0.005673 0.991453 0.005673 234 40894 0.021690 13.238853 Not shown (strain-result biased); strain Escherichia coli strain=1409 GCF_014076685.2 1 230 0 230 1.000000 0.020160 0.001271 0.020160 1.000000 0.020160 230 11409 0.020160 6.971682 Not shown (strain-result biased); strain Akkermansia muciniphila strain=EB-AMDK-2 GCF_003716975.1 58 44322 229 35704 1.241374 0.019783 0.001248 0.015936 0.685298 0.015936 52100 2240430 0.019783 7.858124 Not shown (strain-result biased); strain Escherichia coli strain=NCTC9104 GCF_900635635.1 3 386 0 268 1.440299 0.019610 0.001237 0.013615 1.000000 0.013615 268 19684 0.019610 8.511625 Not shown (strain-result biased); strain Escherichia coli strain=HKUOPY1 GCF_003031225.1 1 236 1 236 1.000000 0.019570 0.001234 0.019570 1.000000 0.019570 236 12059 0.019570 7.077956 Not shown (strain-result biased); strain Faecalibacterium prausnitzii strain=Fp28 GCF_019968055.1 26 3958 86 1655 2.391541 0.018885 0.001191 0.007896 0.985706 0.007896 1679 209588 0.018885 11.208893 Not shown (strain-result biased); strain Escherichia coli strain=JP538 GCF_022514105.1 2 531 0 531 1.000000 0.018785 0.001185 0.018785 1.000000 0.018785 531 28267 0.018785 7.227276 Not shown (strain-result biased); strain Escherichia coli strain=SCPM-O-B-9427 GCF_020808965.1 2 1211 1 1211 1.000000 0.018683 0.001178 0.018683 0.729958 0.018683 1659 64820 0.018683 7.247483 Not shown (strain-result biased); strain Escherichia coli strain=BS90R-A GCF_016942505.1 1 365 2 365 1.000000 0.018678 0.001178 0.018678 0.492578 0.018678 741 19542 0.018678 7.248429 Not shown (strain-result biased); strain Bifidobacterium adolescentis strain=BB23 GCF_000817995.1 22 9102 239 5536 1.644147 0.018590 0.001172 0.011307 0.898701 0.011307 6160 489626 0.018590 9.351150 Not shown (strain-result biased); strain Bifidobacterium adolescentis strain=6 GCF_003429385.1 13 9825 358 4815 2.040498 0.018201 0.001148 0.008920 0.907805 0.008920 5304 539799 0.018201 10.540768 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=IMDO 130101 GCF_900205745.1 45 28045 950 23337 1.201740 0.017951 0.001132 0.014938 0.611268 0.014938 38178 1562288 0.017951 8.120633 Not shown (strain-result biased); strain Escherichia coli strain=17-07187 GCF_023277345.1 2 1006 1 727 1.383769 0.017596 0.001110 0.012716 1.000000 0.012716 727 57171 0.017596 8.811334 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=SNUV175 GCF_001941785.1 33 27297 189 20782 1.313492 0.016278 0.001027 0.012393 0.841785 0.012393 24688 1676963 0.016278 8.927096 Not shown (strain-result biased); strain Escherichia coli strain=NCTC9087 GCF_900636145.1 1 260 0 260 1.000000 0.016131 0.001017 0.016131 1.000000 0.016131 260 16118 0.016131 7.809757 Not shown (strain-result biased); strain Akkermansia muciniphila strain=MDA-JAX AM001 GCF_026810105.1 55 34619 1523 27713 1.249197 0.015969 0.001007 0.012784 0.546877 0.012784 50675 2167834 0.015969 8.787744 Not shown (strain-result biased); strain Faecalibacterium prausnitzii strain=Fp360 GCF_019967975.1 95 16336 861 3390 4.818879 0.015899 0.001003 0.003299 0.867451 0.003299 3908 1027498 0.015899 17.380931 Not shown (strain-result biased); Filtered out (minCov > 0.0032992764949420824); strain Akkermansia muciniphila strain=EB-AMDK-28 GCF_010223075.1 47 34722 137 32096 1.081817 0.015669 0.000988 0.014484 0.720077 0.014484 44573 2215942 0.015669 8.248701 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=SK152 GCF_002242615.1 32 25093 224 24200 1.036901 0.015373 0.000970 0.014826 0.766721 0.014826 31563 1632258 0.015373 8.151606 Not shown (strain-result biased); strain Escherichia coli strain=ACN002 GCF_001515725.1 1 380 0 380 1.000000 0.015173 0.000957 0.015173 1.000000 0.015173 380 25044 0.015173 8.056380 Not shown (strain-result biased); strain Escherichia coli strain=AH65 GCF_013389695.1 1 148 0 148 1.000000 0.015064 0.000950 0.015064 1.000000 0.015064 148 9825 0.015064 8.086108 Not shown (strain-result biased); strain Escherichia coli O104:H4 strain=FWSEC0009 GCF_005014075.1 2 967 0 967 1.000000 0.014946 0.000943 0.014946 1.000000 0.014946 967 64699 0.014946 8.118308 Not shown (strain-result biased); strain Escherichia coli strain=FDAARGOS_772 GCF_006364695.1 1 932 0 932 1.000000 0.014770 0.000931 0.014770 1.000000 0.014770 932 63102 0.014770 8.167375 Not shown (strain-result biased); strain Escherichia coli 042 strain=042 GCF_000027125.1 7 1741 145 1491 1.167673 0.014509 0.000915 0.012425 0.495184 0.012425 3011 119996 0.014509 8.915168 Not shown (strain-result biased); strain Escherichia coli strain=WP5-S17-ESBL-10 GCF_014169195.1 1 260 0 260 1.000000 0.014426 0.000910 0.014426 1.000000 0.014426 260 18023 0.014426 8.265545 Not shown (strain-result biased); strain Escherichia coli strain=2014C-3051 GCF_003017915.1 1 908 1 908 1.000000 0.014264 0.000900 0.014264 1.000000 0.014264 908 63656 0.014264 8.312985 Not shown (strain-result biased); strain Escherichia coli strain=KOr021 GCF_022494805.1 4 1290 6 507 2.544379 0.014033 0.000885 0.005515 0.581422 0.005515 872 91927 0.014033 13.428164 Not shown (strain-result biased); strain Escherichia coli strain=FORC_069 GCF_003491165.1 2 994 0 994 1.000000 0.013879 0.000875 0.013879 1.000000 0.013879 994 71619 0.013879 8.429194 Not shown (strain-result biased); strain Fusobacterium nucleatum subsp. nucleatum ChDC F316 strain=KCOM 1322 GCF_001296165.1 6 1453 74 557 2.608618 0.013683 0.000863 0.005245 0.994643 0.005245 560 106188 0.013683 13.771083 Not shown (strain-result biased); strain Escherichia coli strain=675SK2 GCF_003030365.1 1 436 1 436 1.000000 0.013651 0.000861 0.013651 1.000000 0.013651 436 31938 0.013651 8.500135 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=USM 8633 GCF_009676625.1 26 21019 1207 19043 1.103765 0.013602 0.000858 0.012323 0.670859 0.012323 28386 1545322 0.013602 8.952602 Not shown (strain-result biased); strain Akkermansia muciniphila strain=EB-AMDK-7 GCF_004015245.1 38 29930 887 19238 1.555775 0.013225 0.000834 0.008501 0.592759 0.008501 32455 2263091 0.013225 10.799838 Not shown (strain-result biased); strain Escherichia coli strain=AR_0162 GCF_002180135.1 1 118 0 118 1.000000 0.013129 0.000828 0.013129 1.000000 0.013129 118 8988 0.013129 8.670034 Not shown (strain-result biased); strain Escherichia coli strain=GYX208DH4E-2 GCF_029909715.1 1 148 0 148 1.000000 0.012985 0.000819 0.012985 1.000000 0.012985 148 11398 0.012985 8.718573 Not shown (strain-result biased); strain Escherichia coli strain=FDAARGOS_1286 GCF_016903375.1 2 1079 2 908 1.188326 0.012826 0.000809 0.010793 1.000000 0.010793 908 84129 0.012826 9.573562 Not shown (strain-result biased); strain Bacteroides fragilis strain=DCMOUH0018B GCF_000724665.2 14 5785 476 2163 2.674526 0.012729 0.000803 0.004759 0.642985 0.004759 3364 454489 0.012729 14.460973 Not shown (strain-result biased); Filtered out (minCov > 0.004759191091533568); strain Akkermansia muciniphila strain=EB-AMDK-27 GCF_010223015.1 39 27744 174 23328 1.189300 0.012521 0.000790 0.010528 0.653299 0.010528 35708 2215869 0.012521 9.694716 Not shown (strain-result biased); strain Faecalibacterium prausnitzii strain=APC918/95b GCF_003312465.1 20 1296 0 129 10.046512 0.012520 0.000790 0.001246 0.962687 0.001246 134 103514 0.012520 28.309612 Not shown (strain-result biased); Filtered out (minCov > 0.0012462082423633518); strain Escherichia coli strain=CP131_Sichuan GCF_013201175.1 2 236 0 118 2.000000 0.012482 0.000787 0.006241 1.000000 0.006241 118 18907 0.012482 12.618590 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=CBA7106 GCF_003255875.1 25 18637 171 16167 1.152780 0.012430 0.000784 0.010782 0.721516 0.010782 22407 1499383 0.012430 9.578279 Not shown (strain-result biased); strain Escherichia coli strain=18-4 GCF_029854475.1 1 148 0 148 1.000000 0.012206 0.000770 0.012206 1.000000 0.012206 148 12125 0.012206 8.995870 Not shown (strain-result biased); strain Escherichia coli strain=LD39-1 GCF_009909465.1 4 572 0 454 1.259912 0.012188 0.000769 0.009674 1.000000 0.009674 454 46932 0.012188 10.118026 Not shown (strain-result biased); strain Escherichia coli strain=19-7 GCF_029854495.1 1 148 0 148 1.000000 0.012139 0.000766 0.012139 1.000000 0.012139 148 12192 0.012139 9.020997 Not shown (strain-result biased); strain Escherichia coli strain=EC195 GCF_020616495.1 1 148 0 148 1.000000 0.012137 0.000765 0.012137 1.000000 0.012137 148 12194 0.012137 9.021746 Not shown (strain-result biased); strain Escherichia coli strain=WP7-S17-ESBL-04 GCF_014169475.1 2 531 0 531 1.000000 0.012069 0.000761 0.012069 1.000000 0.012069 531 43996 0.012069 9.047375 Not shown (strain-result biased); strain Escherichia coli strain=EFF60 GCF_023373585.1 2 822 0 822 1.000000 0.011951 0.000754 0.011951 1.000000 0.011951 822 68781 0.011951 9.092589 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=MTCC 5898 GCF_004208815.1 17 15709 592 13128 1.196603 0.011610 0.000732 0.009703 0.746630 0.009703 17583 1353039 0.011610 10.102729 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=47-7 GCF_001854105.1 20 15985 1226 11854 1.348490 0.011609 0.000732 0.008609 0.561375 0.008609 21116 1376962 0.011609 10.731268 Not shown (strain-result biased); strain Escherichia coli strain=JE86-ST05 GCF_015509005.1 3 1320 4 1153 1.144840 0.011525 0.000727 0.010067 0.691662 0.010067 1667 114530 0.011525 9.916258 Not shown (strain-result biased); strain Akkermansia muciniphila strain=AK32 GCF_014170075.1 45 28148 2468 21657 1.299718 0.011470 0.000723 0.008825 0.621738 0.008825 34833 2453991 0.011470 10.597720 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=NCC2970 GCF_001742205.1 31 17112 473 15632 1.094678 0.011470 0.000723 0.010478 0.608984 0.010478 25669 1491917 0.011470 9.718021 Not shown (strain-result biased); strain Escherichia coli strain=JE86-ST02 GCF_015508805.1 2 847 2 847 1.000000 0.011416 0.000720 0.011416 0.563540 0.011416 1503 74195 0.011416 9.305773 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=CYLB55 GCF_029537335.1 20 17083 1160 16866 1.012866 0.011272 0.000711 0.011129 0.821890 0.011129 20521 1515554 0.011272 9.426480 Not shown (strain-result biased); strain Escherichia coli strain=5270 GCF_024917795.1 1 118 0 118 1.000000 0.011258 0.000710 0.011258 1.000000 0.011258 118 10481 0.011258 9.371341 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=LMT2-75 GCF_003855655.1 21 17286 202 15326 1.127887 0.010997 0.000694 0.009750 0.700809 0.009750 21869 1571907 0.010997 10.077933 Not shown (strain-result biased); strain Escherichia coli O104:H4 strain=FDAARGOS_348 GCF_002209105.2 2 686 1 686 1.000000 0.010676 0.000673 0.010676 0.709411 0.010676 967 64259 0.010676 9.626630 Not shown (strain-result biased); strain Escherichia coli strain=NCM3722 K-12 GCF_001043215.1 1 60 0 60 1.000000 0.010627 0.000670 0.010627 1.000000 0.010627 60 5646 0.010627 9.648834 Not shown (strain-result biased); strain Escherichia coli strain=NCTC9066 GCF_900635145.1 1 186 0 186 1.000000 0.010583 0.000667 0.010583 1.000000 0.010583 186 17576 0.010583 9.669262 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=YLF016 GCF_018884205.1 21 16547 80 14581 1.134833 0.010582 0.000667 0.009325 0.683655 0.009325 21328 1563633 0.010582 10.307168 Not shown (strain-result biased); strain Escherichia coli strain=EA2 GCF_016889545.1 1 102 4 102 1.000000 0.010409 0.000656 0.010409 0.426778 0.010409 239 9799 0.010409 9.750314 Not shown (strain-result biased); strain Akkermansia muciniphila strain=CBA5201 GCF_004104435.1 36 24098 1288 19322 1.247179 0.010373 0.000654 0.008318 0.683336 0.008318 28276 2323035 0.010373 10.919133 Not shown (strain-result biased); strain Akkermansia muciniphila strain=EB-AMDK-1 GCF_003716915.1 38 23136 1302 15200 1.522105 0.010325 0.000651 0.006783 0.550266 0.006783 27623 2240874 0.010325 12.100658 Not shown (strain-result biased); strain Escherichia coli strain=RIVM_C029033 GCF_016776165.1 1 1037 0 1037 1.000000 0.010322 0.000651 0.010322 1.000000 0.010322 1037 100462 0.010322 9.791707 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=SCB0035 GCF_022819245.1 24 15691 332 12384 1.267038 0.010286 0.000649 0.008118 0.597741 0.008118 20718 1525516 0.010286 11.053707 Not shown (strain-result biased); strain Clostridioides difficile strain=FDAARGOS_1525 GCF_020341515.1 68 24520 189 18987 1.291410 0.010280 0.000648 0.007960 0.878093 0.007960 21623 2385275 0.010280 11.163635 Not shown (strain-result biased); strain Escherichia coli strain=30COLEC GCF_017088485.1 1 150 0 150 1.000000 0.010004 0.000631 0.010004 1.000000 0.010004 150 14994 0.010004 9.947864 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=VSI05 GCF_029011825.1 24 15330 267 14637 1.047346 0.009997 0.000630 0.009545 0.626128 0.009545 23377 1533473 0.009997 10.186604 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=MTCC 25067 GCF_002356135.1 16 14144 168 14144 1.000000 0.009815 0.000619 0.009815 0.802269 0.009815 17630 1441011 0.009815 10.043975 Not shown (strain-result biased); strain Escherichia coli strain=FORC 064 GCF_003352425.1 1 260 0 260 1.000000 0.009807 0.000618 0.009807 1.000000 0.009807 260 26511 0.009807 10.048153 Not shown (strain-result biased); strain Clostridioides difficile strain=UK 012 GCF_024628745.1 66 23581 180 19302 1.221687 0.009660 0.000609 0.007908 0.874502 0.007908 22072 2440973 0.009660 11.200990 Not shown (strain-result biased); strain Akkermansia muciniphila strain=EB-AMDK-6 GCF_010229315.1 40 21803 250 20235 1.077489 0.009574 0.000604 0.008886 0.585080 0.008886 34585 2277279 0.009574 10.561325 Not shown (strain-result biased); strain Bifidobacterium adolescentis strain=NB2B-16-TSAB GCF_023497865.1 12 6562 75 4598 1.427142 0.009535 0.000601 0.006681 1.000000 0.006681 4598 688182 0.009535 12.193025 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=YL-11 GCF_003860425.1 18 13745 149 13745 1.000000 0.009521 0.000600 0.009521 0.802628 0.009521 17125 1443633 0.009521 10.199494 Not shown (strain-result biased); strain Escherichia coli strain=BE104 GCF_005890115.1 1 60 0 60 1.000000 0.009441 0.000595 0.009441 1.000000 0.009441 60 6355 0.009441 10.242884 Not shown (strain-result biased); strain Escherichia coli strain=214-4 GCF_003956245.1 4 636 8 159 4.000000 0.009423 0.000594 0.002356 0.987578 0.002356 161 67491 0.009423 20.578428 Not shown (strain-result biased); Filtered out (minCov > 0.0023558696715117572); strain Escherichia coli strain=RIVM_C036569 GCF_020883395.1 1 1037 0 1037 1.000000 0.009402 0.000593 0.009402 1.000000 0.009402 1037 110291 0.009402 10.264299 Not shown (strain-result biased); strain Akkermansia muciniphila strain=YL44 GCF_001688765.2 33 20951 832 18729 1.118640 0.009392 0.000592 0.008396 0.592203 0.008396 31626 2230616 0.009392 10.867363 Not shown (strain-result biased); strain Escherichia coli strain=EC6563 GCF_023100765.1 2 302 20 302 1.000000 0.009363 0.000591 0.009363 0.993421 0.009363 304 32253 0.009363 10.285816 Not shown (strain-result biased); strain Escherichia coli strain=AR_0006 GCF_002787215.1 1 562 0 562 1.000000 0.009322 0.000588 0.009322 1.000000 0.009322 562 60290 0.009322 10.309102 Not shown (strain-result biased); strain Escherichia coli strain=RM-103-MS GCF_014217095.1 1 447 2 447 1.000000 0.009307 0.000587 0.009307 1.000000 0.009307 447 48030 0.009307 10.317445 Not shown (strain-result biased); strain Escherichia coli strain=FDAARGOS_1282 GCF_016903275.1 1 562 0 562 1.000000 0.009297 0.000586 0.009297 1.000000 0.009297 562 60449 0.009297 10.322814 Not shown (strain-result biased); strain Escherichia coli strain=2016C-3936C1 GCF_001938625.2 3 789 6 789 1.000000 0.009295 0.000586 0.009295 0.742938 0.009295 1062 84881 0.009295 10.323782 Not shown (strain-result biased); strain Escherichia coli strain=JNU GCF_020034635.1 4 292 0 73 4.000000 0.009139 0.000576 0.002285 1.000000 0.002285 73 31951 0.009139 20.897008 Not shown (strain-result biased); Filtered out (minCov > 0.002284748521173046); strain Clostridioides difficile strain=ST963 GCF_024628765.1 58 23729 469 14560 1.629739 0.009092 0.000573 0.005579 0.938689 0.005579 15511 2609928 0.009092 13.351153 Not shown (strain-result biased); strain Escherichia coli strain=TUM13867 GCF_022846575.1 1 696 0 696 1.000000 0.008962 0.000565 0.008962 1.000000 0.008962 696 77661 0.008962 10.515793 Not shown (strain-result biased); strain Fusobacterium nucleatum subsp. nucleatum strain=ChDC F317 GCF_002211605.1 4 968 48 358 2.703911 0.008939 0.000564 0.003306 0.991690 0.003306 361 108292 0.008939 17.363514 Not shown (strain-result biased); Filtered out (minCov > 0.0033058767037269605); strain Escherichia coli PMV-1 strain=PMV-1 GCF_000493595.2 3 705 10 604 1.167219 0.008925 0.000563 0.007646 0.986928 0.007646 612 78994 0.008925 11.392312 Not shown (strain-result biased); strain Escherichia coli strain=FORC_043 GCF_002214745.2 4 731 4 731 1.000000 0.008919 0.000562 0.008919 0.467391 0.008919 1564 81963 0.008919 10.541560 Not shown (strain-result biased); strain Escherichia coli strain=Ec-FL1-1X GCF_019426265.1 1 696 0 696 1.000000 0.008863 0.000559 0.008863 1.000000 0.008863 696 78533 0.008863 10.575196 Not shown (strain-result biased); strain Bifidobacterium adolescentis strain=P2P3 GCF_003856735.1 15 4497 156 4351 1.033556 0.008837 0.000557 0.008550 0.673947 0.008550 6456 508900 0.008837 10.768548 Not shown (strain-result biased); strain Faecalibacterium prausnitzii strain=Fp944 GCF_019967955.1 18 3031 43 722 4.198061 0.008755 0.000552 0.002085 0.674136 0.002085 1071 346207 0.008755 21.874896 Not shown (strain-result biased); Filtered out (minCov > 0.002085457544185993); strain Akkermansia muciniphila strain=EB-AMDK-12 GCF_004015045.1 22 19518 39 18948 1.030082 0.008712 0.000549 0.008457 0.784531 0.008457 24152 2240478 0.008712 10.827904 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=EFEL6800 GCF_029961225.1 21 13564 413 11225 1.208374 0.008699 0.000549 0.007199 0.641026 0.007199 17511 1559219 0.008699 11.743335 Not shown (strain-result biased); strain Faecalibacterium prausnitzii strain=Indica GCF_002586945.1 7 1719 1 393 4.374046 0.008681 0.000547 0.001985 1.000000 0.001985 393 198025 0.008681 22.424995 Not shown (strain-result biased); Filtered out (minCov > 0.001984597904305012); strain Akkermansia muciniphila strain=139 GCF_004319565.1 33 19631 1037 16899 1.161666 0.008628 0.000544 0.007428 0.601238 0.007428 28107 2275175 0.008628 11.560005 Not shown (strain-result biased); strain Clostridioides difficile strain=CE91-St50 GCF_022845595.1 52 20650 395 16517 1.250227 0.008576 0.000541 0.006859 0.898640 0.006859 18380 2407939 0.008576 12.032684 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=2760 GCF_008802915.1 18 13680 244 11346 1.205711 0.008518 0.000537 0.007065 0.802348 0.007065 14141 1606028 0.008518 11.855385 Not shown (strain-result biased); strain Escherichia coli strain=7/2 GCF_003856675.1 1 562 0 562 1.000000 0.008491 0.000536 0.008491 1.000000 0.008491 562 66185 0.008491 10.805874 Not shown (strain-result biased); strain Akkermansia muciniphila strain=KGMB01989 GCF_017570485.1 27 19411 178 19411 1.000000 0.008427 0.000531 0.008427 0.675189 0.008427 28749 2303419 0.008427 10.847380 Not shown (strain-result biased); strain Akkermansia muciniphila MGYG-HGUT-02454 GCF_902387255.1 34 18826 386 18350 1.025940 0.008404 0.000530 0.008191 0.535798 0.008191 34248 2240157 0.008404 11.003609 Not shown (strain-result biased); strain Escherichia coli strain=RH-045-CS GCF_014216695.1 5 760 15 152 5.000000 0.008217 0.000518 0.001643 1.000000 0.001643 152 92486 0.008217 24.646714 Not shown (strain-result biased); Filtered out (minCov > 0.0016434919879765586); strain Escherichia coli strain=PI6 GCF_024585945.1 1 186 0 186 1.000000 0.008211 0.000518 0.008211 1.000000 0.008211 186 22652 0.008211 10.990220 Not shown (strain-result biased); strain Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708 strain=ATCC 10708 GCF_000487295.3 1 293 0 293 1.000000 0.008209 0.000518 0.008209 1.000000 0.008209 293 35693 0.008209 10.991775 Not shown (strain-result biased); strain Salmonella enterica strain=XM3104 GCF_026248385.1 1 293 0 293 1.000000 0.008178 0.000516 0.008178 1.000000 0.008178 293 35826 0.008178 11.012404 Not shown (strain-result biased); strain Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 strain=SC-B67 GCF_000008105.1 1 293 0 293 1.000000 0.008150 0.000514 0.008150 1.000000 0.008150 293 35951 0.008150 11.031757 Not shown (strain-result biased); strain Escherichia coli strain=MS1050 GCF_026506415.1 1 696 0 696 1.000000 0.008098 0.000511 0.008098 1.000000 0.008098 696 85948 0.008098 11.067453 Not shown (strain-result biased); strain Salmonella enterica subsp. enterica serovar Typhimurium strain=NRRL B-4212 GCF_005154105.1 1 293 0 293 1.000000 0.008065 0.000509 0.008065 1.000000 0.008065 293 36331 0.008065 11.090383 Not shown (strain-result biased); strain Bifidobacterium adolescentis MGYG-HGUT-02395 GCF_902386735.1 11 3939 163 1832 2.150109 0.008045 0.000507 0.003742 0.745928 0.003742 2456 489626 0.008045 16.317570 Not shown (strain-result biased); Filtered out (minCov > 0.003741631367615282); strain Escherichia coli O104:H4 str. C227-11 strain=C227-11 368 shch GCF_000986765.1 2 519 1 519 1.000000 0.008036 0.000507 0.008036 0.536711 0.008036 967 64583 0.008036 11.110238 Not shown (strain-result biased); strain Escherichia coli strain=WCHEC005784 GCF_003051985.2 1 118 0 118 1.000000 0.008023 0.000506 0.008023 1.000000 0.008023 118 14707 0.008023 11.119154 Not shown (strain-result biased); strain Escherichia coli strain=ETEC4090 GCF_030013105.1 2 536 4 268 2.000000 0.007970 0.000503 0.003985 1.000000 0.003985 268 67251 0.007970 15.809382 Not shown (strain-result biased); Filtered out (minCov > 0.003985070853964997); strain Akkermansia muciniphila strain=KGMB01988 GCF_017570525.1 27 18121 156 17684 1.024712 0.007867 0.000496 0.007677 0.692540 0.007677 25535 2303425 0.007867 11.369026 Not shown (strain-result biased); strain Escherichia coli strain=EC-129 GCF_005156265.1 1 91 0 91 1.000000 0.007846 0.000495 0.007846 1.000000 0.007846 91 11599 0.007846 11.245512 Not shown (strain-result biased); strain Escherichia coli strain=AR435 GCF_003073835.1 1 91 0 91 1.000000 0.007837 0.000494 0.007837 1.000000 0.007837 91 11611 0.007837 11.251374 Not shown (strain-result biased); strain Escherichia coli strain=AR_0085 GCF_003204155.1 1 694 2 694 1.000000 0.007836 0.000494 0.007836 0.995696 0.007836 697 88566 0.007836 11.252409 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=B44 GCF_016617695.1 17 12028 240 11425 1.052779 0.007758 0.000489 0.007369 0.666142 0.007369 17151 1550431 0.007758 11.606254 Not shown (strain-result biased); strain Akkermansia muciniphila strain=EB-AMDK-14 GCF_004015065.1 30 17133 273 16701 1.025867 0.007648 0.000482 0.007455 0.544237 0.007455 30687 2240290 0.007648 11.538677 Not shown (strain-result biased); strain Escherichia coli strain=NCTC10444 GCF_900635325.1 3 700 3 605 1.157025 0.007402 0.000467 0.006398 0.578947 0.006398 1045 94563 0.007402 12.462042 Not shown (strain-result biased); strain Escherichia coli strain=AW1.7 GCF_020388055.1 1 165 11 165 1.000000 0.007342 0.000463 0.007342 0.993976 0.007342 166 22474 0.007342 11.627814 Not shown (strain-result biased); strain Escherichia coli strain=STEC1575 GCF_027945175.1 3 441 15 147 3.000000 0.007332 0.000462 0.002444 0.835227 0.002444 176 60147 0.007332 20.203051 Not shown (strain-result biased); Filtered out (minCov > 0.0024440121701830514); strain Limosilactobacillus fermentum strain=MWLf-4 GCF_028463945.1 13 11498 197 9899 1.161531 0.007200 0.000454 0.006199 0.768079 0.006199 12888 1596995 0.007200 12.662106 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=AGR1485 GCF_011032765.1 17 11334 262 10616 1.067634 0.007180 0.000453 0.006726 0.512801 0.006726 20702 1578462 0.007180 12.152657 Not shown (strain-result biased); strain Clostridioides difficile strain=TW11-RT078 GCF_011045515.1 37 14771 498 11427 1.292640 0.007150 0.000451 0.005532 0.809794 0.005532 14111 2065769 0.007150 13.408193 Not shown (strain-result biased); strain Clostridioides difficile strain=R_cdtRKO8.1 GCF_025758225.1 44 17063 13 15721 1.085364 0.007120 0.000449 0.006560 0.945795 0.006560 16622 2396416 0.007120 12.305855 Not shown (strain-result biased); strain Akkermansia muciniphila strain=DSM 22959 GCF_008000975.1 23 15221 509 12211 1.246499 0.007046 0.000444 0.005653 0.578858 0.005653 21095 2160248 0.007046 13.263107 Not shown (strain-result biased); strain Escherichia coli strain=FHI_NMBU_11 GCF_016803875.1 3 1479 11 957 1.545455 0.007027 0.000443 0.004547 1.000000 0.004547 957 210483 0.007027 14.796636 Not shown (strain-result biased); Filtered out (minCov > 0.004546685480537621); strain Clostridioides difficile strain=R_cdtRKO10.3 GCF_025758245.1 46 16734 116 15672 1.067764 0.006983 0.000440 0.006540 0.891924 0.006540 17571 2396442 0.006983 12.325272 Not shown (strain-result biased); strain Escherichia coli strain=EC11 GCF_002996665.1 2 226 4 226 1.000000 0.006821 0.000430 0.006821 0.583979 0.006821 387 33133 0.006821 12.066739 Not shown (strain-result biased); strain Escherichia coli strain=2014C-3599 GCF_003018935.1 3 456 12 152 3.000000 0.006759 0.000426 0.002253 1.000000 0.002253 152 67467 0.006759 21.044283 Not shown (strain-result biased); Filtered out (minCov > 0.002252953295685298); strain Escherichia coli strain=NCTC9107 GCF_900636245.1 1 236 1 236 1.000000 0.006722 0.000424 0.006722 1.000000 0.006722 236 35111 0.006722 12.156292 Not shown (strain-result biased); strain Escherichia coli strain=MLI121 GCF_024700885.2 2 593 6 426 1.392019 0.006652 0.000420 0.004779 0.453191 0.004779 940 89143 0.006652 14.431073 Not shown (strain-result biased); Filtered out (minCov > 0.0047788384954511294); strain Clostridioides difficile strain=FDAARGOS_1528 GCF_020097215.1 38 15764 117 15158 1.039979 0.006631 0.000418 0.006376 0.905334 0.006376 16743 2377192 0.006631 12.483091 Not shown (strain-result biased); strain Escherichia coli strain=NT1W22 GCF_014904185.2 1 157 0 157 1.000000 0.006614 0.000417 0.006614 1.000000 0.006614 157 23737 0.006614 12.255247 Not shown (strain-result biased); strain Escherichia coli strain=F8111-1SC3 GCF_002741535.1 4 636 12 159 4.000000 0.006609 0.000417 0.001652 0.987578 0.001652 161 96232 0.006609 24.581145 Not shown (strain-result biased); Filtered out (minCov > 0.001652257045473439); strain Clostridioides difficile strain=S0756_078 GCF_017592625.2 38 15336 568 13675 1.121463 0.006580 0.000415 0.005867 0.912579 0.005867 14985 2330674 0.006580 13.016651 Not shown (strain-result biased); strain Escherichia coli NCCP15648 strain=NCCP15648 GCF_003433275.1 2 442 0 442 1.000000 0.006563 0.000414 0.006563 1.000000 0.006563 442 67351 0.006563 12.303570 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=AGR1487 GCF_011032745.1 18 9674 790 9480 1.020464 0.006425 0.000405 0.006296 0.455310 0.006296 20821 1505774 0.006425 12.563316 Not shown (strain-result biased); strain Akkermansia muciniphila strain=AM06 GCF_028994115.1 19 13853 790 12480 1.110016 0.006412 0.000404 0.005777 0.584406 0.005777 21355 2160374 0.006412 13.118952 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=SRCM 103290 GCF_004063635.1 13 9894 255 7970 1.241405 0.006363 0.000401 0.005126 0.586461 0.005126 13590 1554877 0.006363 13.931662 Not shown (strain-result biased); strain Clostridioides difficile strain=R_cdtRstop8 GCF_025758145.1 39 15213 6 15213 1.000000 0.006347 0.000400 0.006347 0.958299 0.006347 15875 2396759 0.006347 12.511865 Not shown (strain-result biased); strain Escherichia coli strain=RIVM_C028497 GCF_016776125.1 2 559 1 559 1.000000 0.006347 0.000400 0.006347 0.942664 0.006347 593 88079 0.006347 12.512605 Not shown (strain-result biased); strain Escherichia coli strain=RIVM_C011532 GCF_016780285.1 1 115 1 115 1.000000 0.006272 0.000396 0.006272 1.000000 0.006272 115 18335 0.006272 12.587088 Not shown (strain-result biased); strain Akkermansia muciniphila strain=EB-AMDK-11 GCF_004015025.1 25 13946 150 13746 1.014550 0.006225 0.000393 0.006135 0.556203 0.006135 24714 2240477 0.006225 12.727576 Not shown (strain-result biased); strain Akkermansia muciniphila strain=EB-AMDK-19 GCF_004015105.1 17 13419 65 12199 1.100008 0.006088 0.000384 0.005534 0.703924 0.005534 17330 2204306 0.006088 13.405060 Not shown (strain-result biased); strain Escherichia coli strain=MRSN346595 GCF_001886755.1 1 91 0 91 1.000000 0.006085 0.000384 0.006085 1.000000 0.006085 91 14954 0.006085 12.780050 Not shown (strain-result biased); strain Escherichia coli strain=ST2350 Es_ST2350_SE1_NDM_03_2018 GCF_003355175.1 1 296 2 296 1.000000 0.005976 0.000377 0.005976 0.399460 0.005976 741 49534 0.005976 12.897465 Not shown (strain-result biased); strain Escherichia coli strain=1916D6 GCF_009671085.1 1 157 0 157 1.000000 0.005965 0.000376 0.005965 1.000000 0.005965 157 26318 0.005965 12.908547 Not shown (strain-result biased); strain Escherichia coli O8:H28 strain=BMH-17-0027 GCF_018986835.1 2 498 23 252 1.976190 0.005860 0.000370 0.002965 0.992126 0.002965 254 84983 0.005860 18.336688 Not shown (strain-result biased); Filtered out (minCov > 0.0029652989421413696); strain Escherichia coli 1303 strain=1303 GCF_000829985.1 2 287 1 287 1.000000 0.005838 0.000368 0.005838 0.739691 0.005838 388 49160 0.005838 13.049490 Not shown (strain-result biased); strain Clostridioides difficile strain=P4D3A1-1 GCF_028743315.1 39 13962 9 13962 1.000000 0.005830 0.000368 0.005830 0.906623 0.005830 15400 2394857 0.005830 13.058591 Not shown (strain-result biased); strain Escherichia coli strain=MLI102 GCF_024329785.2 2 802 3 802 1.000000 0.005741 0.000362 0.005741 0.533599 0.005741 1503 139686 0.005741 13.159486 Not shown (strain-result biased); strain Fusobacterium nucleatum subsp. nucleatum strain=25586 GCF_003019295.1 7 547 8 142 3.852113 0.005694 0.000359 0.001478 1.000000 0.001478 142 96062 0.005694 25.990247 Not shown (strain-result biased); Filtered out (minCov > 0.0014782119880910245); strain Akkermansia muciniphila strain=EB-AMDK-36 GCF_010223195.1 18 12544 246 11759 1.066757 0.005691 0.000359 0.005335 0.646383 0.005335 18192 2204254 0.005691 13.654761 Not shown (strain-result biased); strain Clostridioides difficile strain=R_cdtRmut6.1 GCF_025758185.1 40 13617 20 12518 1.087794 0.005682 0.000358 0.005223 0.821661 0.005223 15235 2396700 0.005682 13.800735 Not shown (strain-result biased); strain Escherichia coli strain=LAU-OXA GCF_009363035.1 1 260 0 260 1.000000 0.005667 0.000357 0.005667 1.000000 0.005667 260 45879 0.005667 13.246044 Not shown (strain-result biased); strain Akkermansia muciniphila strain=Akk1713 GCF_018847235.1 17 12348 372 10113 1.221003 0.005604 0.000353 0.004589 0.537926 0.004589 18800 2203511 0.005604 14.727150 Not shown (strain-result biased); Filtered out (minCov > 0.004589493766992767); strain Akkermansia muciniphila strain=EB-AMDK-13 GCF_004015285.1 22 12483 57 12483 1.000000 0.005572 0.000351 0.005572 0.589878 0.005572 21162 2240308 0.005572 13.359218 Not shown (strain-result biased); strain Akkermansia muciniphila strain=Akk2670 GCF_018847055.1 17 12394 413 9598 1.291311 0.005555 0.000350 0.004302 0.696567 0.004302 13779 2231157 0.005555 15.213830 Not shown (strain-result biased); Filtered out (minCov > 0.0043018039519406295); strain Escherichia coli strain=SCU-111 GCF_012934515.1 2 932 0 932 1.000000 0.005546 0.000350 0.005546 1.000000 0.005546 932 168064 0.005546 13.391273 Not shown (strain-result biased); strain Akkermansia muciniphila strain=EB-AMDK-5 GCF_010229055.1 21 12263 170 10658 1.150591 0.005528 0.000349 0.004804 0.502475 0.004804 21211 2218389 0.005528 14.392466 Not shown (strain-result biased); Filtered out (minCov > 0.004804387327921298); strain Escherichia coli strain=52148 GCF_011769865.1 1 118 0 118 1.000000 0.005512 0.000348 0.005512 1.000000 0.005512 118 21409 0.005512 13.432505 Not shown (strain-result biased); strain Akkermansia muciniphila strain=EB-AMDK-29 GCF_010223095.1 20 12914 372 12456 1.036769 0.005510 0.000347 0.005315 0.690007 0.005315 18052 2343774 0.005510 13.680799 Not shown (strain-result biased); strain Clostridioides difficile strain=DSM 104452 GCF_024399435.1 34 12796 85 11533 1.109512 0.005469 0.000345 0.004929 0.876501 0.004929 13158 2339916 0.005469 14.208756 Not shown (strain-result biased); Filtered out (minCov > 0.004928809410252334); strain Clostridioides difficile M120 strain=M120 GCF_000210435.1 30 12519 444 9636 1.299191 0.005468 0.000345 0.004209 0.894043 0.004209 10778 2289583 0.005468 15.382042 Not shown (strain-result biased); Filtered out (minCov > 0.004208626636378764); strain Akkermansia muciniphila strain=EB-AMDK-8 GCF_004015265.1 23 12453 267 11339 1.098245 0.005429 0.000342 0.004944 0.622031 0.004944 18229 2293665 0.005429 14.187356 Not shown (strain-result biased); Filtered out (minCov > 0.004943616439192297); strain Clostridioides difficile strain=Mta-79 GCF_008245165.1 32 12787 360 6694 1.910218 0.005425 0.000342 0.002840 0.875490 0.002840 7646 2357071 0.005425 18.738115 Not shown (strain-result biased); Filtered out (minCov > 0.0028399653637926053); strain Akkermansia muciniphila strain=Akk0500a GCF_018847575.1 16 11935 367 11935 1.000000 0.005417 0.000342 0.005417 0.604212 0.005417 19753 2203332 0.005417 13.550313 Not shown (strain-result biased); strain Akkermansia muciniphila strain=Akk0500b GCF_018847595.1 18 12160 359 9355 1.299840 0.005406 0.000341 0.004159 0.598797 0.004159 15623 2249284 0.005406 15.473738 Not shown (strain-result biased); Filtered out (minCov > 0.004159101296234713); strain Escherichia coli strain=STEC276 GCF_021534925.1 3 202 10 176 1.147727 0.005400 0.000341 0.004705 0.539877 0.004705 326 37406 0.005400 14.544212 Not shown (strain-result biased); Filtered out (minCov > 0.004705127519649254); strain Escherichia coli strain=DETEC-S792 GCF_027944575.1 3 1446 12 482 3.000000 0.005373 0.000339 0.001791 1.000000 0.001791 482 269107 0.005373 23.607484 Not shown (strain-result biased); Filtered out (minCov > 0.0017911091127321103); strain Clostridioides difficile QCD-23m63 strain=QCD-23m63 GCF_000155065.1 29 12023 386 11623 1.034415 0.005360 0.000338 0.005181 0.910537 0.005181 12765 2243242 0.005360 13.856416 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=HFD1 GCF_012273035.1 9 8345 49 6598 1.264777 0.005353 0.000338 0.004232 0.724577 0.004232 9106 1559034 0.005353 15.339129 Not shown (strain-result biased); Filtered out (minCov > 0.004232107830874759); strain Escherichia coli strain=KGu016 GCF_022494825.1 2 338 0 169 2.000000 0.005349 0.000337 0.002675 1.000000 0.002675 169 63188 0.005349 19.310450 Not shown (strain-result biased); Filtered out (minCov > 0.0026745584604671775); strain Escherichia coli strain=P14 GCF_017355145.1 2 305 0 305 1.000000 0.005286 0.000333 0.005286 0.993485 0.005286 307 57699 0.005286 13.717764 Not shown (strain-result biased); strain Limosilactobacillus fermentum strain=VHProbi O48 GCF_024637935.1 16 8055 267 4938 1.631227 0.005280 0.000333 0.003237 0.486790 0.003237 10144 1525465 0.005280 17.547754 Not shown (strain-result biased); Filtered out (minCov > 0.0032370457532621202); strain Bifidobacterium adolescentis strain=iVS-1 GCF_029855065.1 8 2880 30 2880 1.000000 0.005280 0.000333 0.005280 0.656934 0.005280 4384 545442 0.005280 13.725508 Not shown (strain-result biased); strain Methanobrevibacter smithii ATCC 35061 strain=ATCC 35061; PS; DSMZ 861 GCF_000016525.1 10 2782 1 2596 1.071649 0.005261 0.000332 0.004910 1.000000 0.004910 2596 528769 0.005261 14.236785 Not shown (strain-result biased); Filtered out (minCov > 0.004909516253789462); strain Methanobrevibacter smithii ATCC 35061 strain=DSM 861 GCF_028743435.1 10 2782 1 2596 1.071649 0.005261 0.000332 0.004910 1.000000 0.004910 2596 528769 0.005261 14.236785 Not shown (strain-result biased); Filtered out (minCov > 0.004909516253789462); strain Clostridioides difficile strain=DSM 104450 GCF_025135955.1 32 12332 101 10852 1.136380 0.005227 0.000330 0.004600 0.871577 0.004600 12451 2359304 0.005227 14.710788 Not shown (strain-result biased); Filtered out (minCov > 0.004599661595114491); strain Clostridioides difficile CF5 strain=CF5 GCF_000210415.1 32 12506 217 11132 1.123428 0.005211 0.000329 0.004638 0.877918 0.004638 12680 2399926 0.005211 14.648824 Not shown (strain-result biased); Filtered out (minCov > 0.004638476353020885); strain Escherichia coli strain=SWHEFF_68 GCF_022353925.1 1 436 1 436 1.000000 0.005197 0.000328 0.005197 1.000000 0.005197 436 83888 0.005197 13.834872 Not shown (strain-result biased); strain Akkermansia muciniphila strain=Akk1756 GCF_018847215.1 21 12375 715 8802 1.405930 0.005191 0.000327 0.003692 0.651614 0.003692 13508 2383766 0.005191 16.426227 Not shown (strain-result biased); Filtered out (minCov > 0.0036924765266389404); strain Clostridioides difficile strain=R3 GCF_002946535.2 30 12114 488 10505 1.153165 0.005156 0.000325 0.004471 0.914831 0.004471 11483 2349369 0.005156 14.921224 Not shown (strain-result biased); Filtered out (minCov > 0.004471413388020358); strain Akkermansia muciniphila strain=KGMB01990 GCF_017570505.1 18 11870 205 11870 1.000000 0.005153 0.000325 0.005153 0.592552 0.005153 20032 2303424 0.005153 13.894397 Not shown (strain-result biased); strain Clostridioides difficile M68 strain=M68 GCF_000210395.1 37 12516 375 10394 1.204156 0.005135 0.000324 0.004264 0.788859 0.004264 13176 2437358 0.005135 15.280597 Not shown (strain-result biased); Filtered out (minCov > 0.004264453559961237); strain Escherichia coli strain=WP4-S17-ESBL-08 GCF_014169035.1 2 338 0 169 2.000000 0.005122 0.000323 0.002561 1.000000 0.002561 169 65990 0.005122 19.735080 Not shown (strain-result biased); Filtered out (minCov > 0.0025609940900136385); strain Clostridioides difficile QCD-37x79 GCF_000154685.1 35 12519 5 11035 1.134481 0.005086 0.000321 0.004484 0.940349 0.004484 11735 2461246 0.005086 14.901005 Not shown (strain-result biased); Filtered out (minCov > 0.004483501446015554); strain Escherichia coli strain=DS26-1 GCF_018884545.1 1 411 0 411 1.000000 0.005046 0.000318 0.005046 1.000000 0.005046 411 81457 0.005046 14.042515 Not shown (strain-result biased); strain Clostridioides difficile CIP 107932 strain=CIP 107932 GCF_000155045.1 29 11885 10 10483 1.133740 0.005010 0.000316 0.004419 0.924182 0.004419 11343 2372061 0.005010 15.009228 Not shown (strain-result biased); Filtered out (minCov > 0.004419363582976997); strain Limosilactobacillus fermentum strain=LDTM 7301 GCF_003346795.1 11 7606 160 7137 1.065714 0.005001 0.000315 0.004692 0.577287 0.004692 12363 1521002 0.005001 14.564170 Not shown (strain-result biased); Filtered out (minCov > 0.0046923015222859665); strain Escherichia coli strain=NCTC9112 GCF_900635185.1 1 908 1 908 1.000000 0.005000 0.000315 0.005000 1.000000 0.005000 908 181616 0.005000 14.107361 Not shown (strain-result biased); Filtered out (minCov > 0.004999559510175315); strain Clostridioides difficile R20291 strain=R20291 GCF_000027105.1 30 11942 21 11942 1.000000 0.004985 0.000314 0.004985 0.885971 0.004985 13479 2395502 0.004985 14.127799 Not shown (strain-result biased); Filtered out (minCov > 0.004985176384741069); strain Clostridioides difficile strain=12-00011 GCF_002945855.1 34 11923 15 11458 1.040583 0.004979 0.000314 0.004785 0.916713 0.004785 12499 2394584 0.004979 14.421788 Not shown (strain-result biased); Filtered out (minCov > 0.004784964737090033); strain Clostridioides difficile strain=10-00078 GCF_002946035.1 33 11892 124 10989 1.082173 0.004966 0.000313 0.004589 0.922051 0.004589 11918 2394506 0.004966 14.727534 Not shown (strain-result biased); Filtered out (minCov > 0.004589255570877668); strain Escherichia coli O155 strain=NWU_3 GCF_029854395.1 1 60 0 60 1.000000 0.004892 0.000309 0.004892 1.000000 0.004892 60 12265 0.004892 14.262421 Not shown (strain-result biased); Filtered out (minCov > 0.004891969017529555); strain Escherichia coli O155:H21 strain=NWU_1 GCF_029674705.1 1 60 0 60 1.000000 0.004841 0.000305 0.004841 1.000000 0.004841 60 12395 0.004841 14.338177 Not shown (strain-result biased); Filtered out (minCov > 0.004840661557079467); strain Clostridioides difficile CD196 strain=CD196 GCF_000085225.1 31 11457 11 11111 1.031140 0.004787 0.000302 0.004642 0.982144 0.004642 11313 2393539 0.004787 14.643110 Not shown (strain-result biased); Filtered out (minCov > 0.004642080200071944); strain Escherichia coli strain=GDAR2-2 GCF_022220885.1 1 260 0 260 1.000000 0.004786 0.000302 0.004786 1.000000 0.004786 260 54329 0.004786 14.420738 Not shown (strain-result biased); Filtered out (minCov > 0.004785657751845239); strain Fusobacterium nucleatum strain=JD-Fn1 GCF_027947475.1 2 287 23 210 1.366667 0.004780 0.000301 0.003498 1.000000 0.003498 210 60038 0.004780 16.878840 Not shown (strain-result biased); Filtered out (minCov > 0.0034977847363336554); strain Akkermansia muciniphila strain=JCM 30893 GCF_009731575.1 13 11193 241 10150 1.102759 0.004773 0.000301 0.004328 0.793589 0.004328 12790 2345059 0.004773 15.167079 Not shown (strain-result biased); Filtered out (minCov > 0.004328249310571717); strain Limosilactobacillus fermentum strain=DM072 GCF_024054255.2 11 7382 211 7330 1.007094 0.004767 0.000301 0.004733 0.670263 0.004733 10936 1548643 0.004767 14.500849 Not shown (strain-result biased); Filtered out (minCov > 0.0047331760773787115); strain Limosilactobacillus fermentum strain=SRCM103285 GCF_004063515.1 11 7550 145 7375 1.023729 0.004740 0.000299 0.004630 0.486189 0.004630 15169 1592841 0.004740 14.662143 Not shown (strain-result biased); Filtered out (minCov > 0.004630091766849296); strain Clostridioides difficile ATCC 43255 strain=ATCC 43255 GCF_000155025.1 29 11318 124 7463 1.516548 0.004716 0.000297 0.003110 0.870524 0.003110 8573 2399792 0.004716 17.904151 Not shown (strain-result biased); Filtered out (minCov > 0.0031098528539140057); strain Limosilactobacillus fermentum strain=9-4 GCF_018732245.1 15 7192 832 7183 1.001253 0.004699 0.000296 0.004693 0.403019 0.004693 17823 1530657 0.004699 14.563461 Not shown (strain-result biased); Filtered out (minCov > 0.004692756117144468); strain Clostridioides difficile QCD-97b34 GCF_000154665.1 34 11228 15 10790 1.040593 0.004695 0.000296 0.004512 0.834687 0.004512 12927 2391536 0.004695 14.854082 Not shown (strain-result biased); Filtered out (minCov > 0.004511744753162821); strain Akkermansia muciniphila strain=EB-AMDK-30 GCF_010223115.1 19 10908 559 9881 1.103937 0.004654 0.000294 0.004216 0.503055 0.004216 19642 2343748 0.004654 15.368717 Not shown (strain-result biased); Filtered out (minCov > 0.004215896930898714); strain Limosilactobacillus fermentum strain=L1 GCF_018866265.1 11 7047 88 4966 1.419050 0.004642 0.000293 0.003272 0.672444 0.003272 7385 1517947 0.004642 17.454740 Not shown (strain-result biased); Filtered out (minCov > 0.0032715239728396315); strain Akkermansia muciniphila strain=EB-AMDK-37 GCF_010223405.1 14 10696 195 10111 1.057858 0.004636 0.000292 0.004382 0.673348 0.004382 15016 2307192 0.004636 15.072702 Not shown (strain-result biased); Filtered out (minCov > 0.004382383434061838); strain Limosilactobacillus fermentum strain=MSJK0025 GCF_029691425.1 14 7273 492 5585 1.302238 0.004562 0.000288 0.003504 0.406951 0.003504 13724 1594095 0.004562 16.864885 Not shown (strain-result biased); Filtered out (minCov > 0.003503555308811583); strain Akkermansia muciniphila strain=EB-AMDK-10 GCF_004015005.1 17 10138 77 9696 1.045586 0.004526 0.000285 0.004328 0.532601 0.004328 18205 2240153 0.004526 15.167033 Not shown (strain-result biased); Filtered out (minCov > 0.004328275791876716); strain Clostridioides difficile strain=DSM 105001 GCF_014236775.1 27 10569 300 10126 1.043749 0.004505 0.000284 0.004316 0.907999 0.004316 11152 2346253 0.004505 15.189003 Not shown (strain-result biased); Filtered out (minCov > 0.004315817603642915); strain Limosilactobacillus fermentum strain=LAC FRN-92 GCF_002192435.1 8 7057 163 6041 1.168184 0.004471 0.000282 0.003827 0.814590 0.003827 7416 1578462 0.004471 16.133552 Not shown (strain-result biased); Filtered out (minCov > 0.0038271431304649716); strain Limosilactobacillus fermentum strain=GD5MG GCF_028216035.1 13 7444 257 7238 1.028461 0.004465 0.000282 0.004341 0.635749 0.004341 11385 1667169 0.004465 15.143830 Not shown (strain-result biased); Filtered out (minCov > 0.004341491474469595); strain Clostridioides difficile strain=12-00008 GCF_002945665.1 27 10660 2 9880 1.078947 0.004452 0.000281 0.004126 0.929270 0.004126 10632 2394417 0.004452 15.535440 Not shown (strain-result biased); Filtered out (minCov > 0.004126265391533722); strain Limosilactobacillus fermentum strain=PCC GCF_024665195.1 10 6812 1174 6546 1.040636 0.004411 0.000278 0.004239 0.451791 0.004239 14489 1544400 0.004411 15.327437 Not shown (strain-result biased); Filtered out (minCov > 0.004238539238539238); strain Clostridioides difficile strain=R_phiCD75-3 GCF_025758205.1 33 10617 4 10304 1.030377 0.004409 0.000278 0.004279 0.953544 0.004279 10806 2408043 0.004409 15.254502 Not shown (strain-result biased); Filtered out (minCov > 0.004278993356846203); strain Clostridioides difficile strain=W0003a GCF_002812645.1 28 10260 77 7473 1.372943 0.004352 0.000274 0.003169 0.942252 0.003169 7931 2357794 0.004352 17.734384 Not shown (strain-result biased); Filtered out (minCov > 0.0031694880892902434); strain Akkermansia muciniphila strain=EB-AMDK-22 GCF_004015125.1 15 9514 128 9416 1.010408 0.004317 0.000272 0.004272 0.605336 0.004272 15555 2204099 0.004317 15.266964 Not shown (strain-result biased); Filtered out (minCov > 0.0042720404119778645); strain Escherichia coli O128ac:H12 strain=AW1.7 GCF_018085225.1 1 97 1 97 1.000000 0.004309 0.000272 0.004309 1.000000 0.004309 97 22513 0.004309 15.201736 Not shown (strain-result biased); Filtered out (minCov > 0.004308621685248523); strain Clostridioides difficile strain=R_cdtRstop4.2 GCF_025758165.1 29 10318 9 9527 1.083027 0.004305 0.000271 0.003975 0.866642 0.003975 10993 2396709 0.004305 15.829408 Not shown (strain-result biased); Filtered out (minCov > 0.00397503409884137); strain Escherichia coli strain=14EC007 GCF_002855415.1 1 82 4 82 1.000000 0.004240 0.000267 0.004240 0.440860 0.004240 186 19338 0.004240 15.324140 Not shown (strain-result biased); Filtered out (minCov > 0.004240355776191954); strain Clostridioides difficile BI1 strain=BI1 GCF_000211235.1 28 10806 15 9407 1.148719 0.004173 0.000263 0.003633 0.931202 0.003633 10102 2589533 0.004173 16.561318 Not shown (strain-result biased); Filtered out (minCov > 0.0036327013403575086); strain Akkermansia muciniphila strain=Akk1576 GCF_018847355.1 17 10021 447 9439 1.061659 0.004140 0.000261 0.003899 0.515117 0.003899 18324 2420801 0.004140 15.983365 Not shown (strain-result biased); Filtered out (minCov > 0.0038991226457689003); strain Escherichia coli strain=ZYB39 GCF_029224125.1 1 311 13 311 1.000000 0.004134 0.000261 0.004134 0.379268 0.004134 820 75232 0.004134 15.521068 Not shown (strain-result biased); Filtered out (minCov > 0.004133879200340281); strain Salmonella enterica subsp. enterica serovar Typhi strain=ERL082356 GCF_001148305.2 1 194 0 194 1.000000 0.004100 0.000259 0.004100 1.000000 0.004100 194 47315 0.004100 15.584985 Not shown (strain-result biased); Filtered out (minCov > 0.004100179647046391); strain Escherichia coli strain=MEI005 GCF_023612415.1 1 380 0 380 1.000000 0.004084 0.000258 0.004084 1.000000 0.004084 380 93050 0.004084 15.616287 Not shown (strain-result biased); Filtered out (minCov > 0.004083825900053735); strain Escherichia coli strain=Survcare321 GCF_018771585.1 1 360 17 360 1.000000 0.004073 0.000257 0.004073 1.000000 0.004073 360 88383 0.004073 15.636762 Not shown (strain-result biased); Filtered out (minCov > 0.004073181494178745); strain Escherichia coli strain=F3398 GCF_009432635.1 1 436 1 436 1.000000 0.004068 0.000257 0.004068 1.000000 0.004068 436 107165 0.004068 15.645807 Not shown (strain-result biased); Filtered out (minCov > 0.004068492511547613); strain Limosilactobacillus fermentum strain=ike38 GCF_016861955.1 13 6134 273 5188 1.182344 0.004054 0.000256 0.003428 0.484633 0.003428 10705 1513221 0.004054 17.049256 Not shown (strain-result biased); Filtered out (minCov > 0.0034284483231464538); strain Akkermansia muciniphila strain=Akk2090 GCF_018847115.1 10 9160 323 7356 1.245242 0.004044 0.000255 0.003248 0.503422 0.003248 14612 2264987 0.004044 17.518851 Not shown (strain-result biased); Filtered out (minCov > 0.0032477007594304075); strain Limosilactobacillus fermentum strain=M4 GCF_023612195.1 11 6071 406 4950 1.226465 0.004035 0.000254 0.003290 0.441570 0.003290 11210 1504765 0.004035 17.406692 Not shown (strain-result biased); Filtered out (minCov > 0.003289550195545484); strain Clostridioides difficile strain=CD060 GCF_024972555.1 26 9810 195 8525 1.150733 0.004032 0.000254 0.003504 0.847753 0.003504 10056 2433150 0.004032 16.864563 Not shown (strain-result biased); Filtered out (minCov > 0.00350368863407517); strain Clostridioides difficile MAR286 GCF_019095765.1 26 9697 213 8662 1.119487 0.004025 0.000254 0.003596 0.883878 0.003596 9800 2409111 0.004025 16.647045 Not shown (strain-result biased); Filtered out (minCov > 0.0035955171845548006); strain Clostridioides difficile strain=CD-10-00484 GCF_002945415.1 26 9633 10 9141 1.053823 0.004024 0.000254 0.003819 0.933327 0.003819 9794 2393866 0.004024 16.151851 Not shown (strain-result biased); Filtered out (minCov > 0.003818509473796779); strain Akkermansia muciniphila strain=KGMB02009 GCF_017570425.1 16 9227 223 8467 1.089760 0.004006 0.000253 0.003676 0.564542 0.003676 14998 2303424 0.004006 16.463512 Not shown (strain-result biased); Filtered out (minCov > 0.003675832152482565); strain Clostridioides difficile strain=020711 GCF_003597915.1 22 9536 6 9044 1.054401 0.003991 0.000252 0.003785 0.928256 0.003785 9743 2389605 0.003991 16.224054 Not shown (strain-result biased); Filtered out (minCov > 0.0037847259275068474); strain Clostridioides difficile strain=ST167 GCF_024919135.1 23 9565 276 8230 1.162211 0.003977 0.000251 0.003422 0.936718 0.003422 8786 2404779 0.003977 17.064487 Not shown (strain-result biased); Filtered out (minCov > 0.0034223519084290075); strain Faecalibacterium prausnitzii MGYG-HGUT-02545 GCF_902388275.1 19 3860 61 1594 2.421581 0.003965 0.000250 0.001637 0.988221 0.001637 1613 973470 0.003965 24.692284 Not shown (strain-result biased); Filtered out (minCov > 0.0016374413181710788); strain Akkermansia muciniphila strain=EB-AMDK-25 GCF_010229955.1 15 8936 501 7430 1.202692 0.003950 0.000249 0.003284 0.458189 0.003284 16216 2262259 0.003950 17.420572 Not shown (strain-result biased); Filtered out (minCov > 0.003284327744966425); strain Escherichia coli O157:H7 strain=NE 1169-1 GCF_013167435.1 1 436 1 436 1.000000 0.003933 0.000248 0.003933 1.000000 0.003933 436 110845 0.003933 15.913254 Not shown (strain-result biased); Filtered out (minCov > 0.0039334205421985655); strain Clostridioides difficile strain=630Derm GCF_000953275.1 25 9214 407 7756 1.187983 0.003931 0.000248 0.003309 0.861874 0.003309 8999 2343662 0.003931 17.354367 Not shown (strain-result biased); Filtered out (minCov > 0.003309350921762609); strain Escherichia coli strain=PM4 GCF_024585765.1 1 88 0 88 1.000000 0.003899 0.000246 0.003899 1.000000 0.003899 88 22568 0.003899 15.982945 Not shown (strain-result biased); Filtered out (minCov > 0.0038993264799716413); strain Clostridioides difficile strain=NT64 GCF_024496065.1 26 9229 285 7234 1.275781 0.003886 0.000245 0.003046 0.887825 0.003046 8148 2374712 0.003886 18.090631 Not shown (strain-result biased); Filtered out (minCov > 0.003046264136451073); strain Clostridioides difficile strain=08-00495 GCF_002945755.1 25 9265 125 9265 1.000000 0.003866 0.000244 0.003866 0.888218 0.003866 10431 2396750 0.003866 16.052682 Not shown (strain-result biased); Filtered out (minCov > 0.0038656514029414835); strain Clostridioides difficile strain=10-00253 GCF_002946135.1 22 9182 3 8363 1.097931 0.003835 0.000242 0.003493 0.890913 0.003493 9387 2394258 0.003835 16.890582 Not shown (strain-result biased); Filtered out (minCov > 0.0034929401927444744); strain Escherichia coli strain=PapM-32-1 GCF_011045235.1 1 260 0 260 1.000000 0.003835 0.000242 0.003835 1.000000 0.003835 260 67804 0.003835 16.117835 Not shown (strain-result biased); Filtered out (minCov > 0.0038345820305586693); strain Limosilactobacillus fermentum strain=SRP423 GCF_029223965.1 10 5917 1171 5383 1.099201 0.003834 0.000242 0.003488 0.431815 0.003488 12466 1543277 0.003834 16.902503 Not shown (strain-result biased); Filtered out (minCov > 0.003488032284547751); strain Bifidobacterium adolescentis strain=PRL2019 GCF_017815835.1 6 2027 44 2027 1.000000 0.003816 0.000241 0.003816 0.634826 0.003816 3193 531123 0.003816 16.156243 Not shown (strain-result biased); Filtered out (minCov > 0.003816441765843317); strain Clostridioides difficile QCD-63q42 GCF_000154625.1 20 9341 37 7846 1.190543 0.003816 0.000241 0.003205 0.969360 0.003205 8094 2448114 0.003816 17.635777 Not shown (strain-result biased); Filtered out (minCov > 0.0032049161109327425); strain Clostridioides difficile QCD-76w55 GCF_000154645.1 26 9810 3 9810 1.000000 0.003810 0.000240 0.003810 0.900496 0.003810 10894 2575077 0.003810 16.170810 Not shown (strain-result biased); Filtered out (minCov > 0.003809594819883056); strain Fusobacterium nucleatum strain=FNA GCF_028657925.1 4 252 0 126 2.000000 0.003805 0.000240 0.001903 1.000000 0.001903 126 66221 0.003805 22.903351 Not shown (strain-result biased); Filtered out (minCov > 0.0019027196810679392); strain Akkermansia muciniphila strain=Akk1370 GCF_018847495.1 14 8659 104 7624 1.135756 0.003803 0.000240 0.003348 0.596744 0.003348 12776 2277146 0.003803 17.253442 Not shown (strain-result biased); Filtered out (minCov > 0.0033480505861284257); strain Clostridioides difficile strain=10-00071 GCF_002945945.1 22 9017 0 9017 1.000000 0.003766 0.000238 0.003766 1.000000 0.003766 9017 2394214 0.003766 16.264140 Not shown (strain-result biased); Filtered out (minCov > 0.0037661629244503626); strain Akkermansia muciniphila strain=EB-AMDK-35 GCF_010223255.1 16 8298 356 7386 1.123477 0.003764 0.000237 0.003351 0.556972 0.003351 13261 2204277 0.003764 17.246446 Not shown (strain-result biased); Filtered out (minCov > 0.0033507585480409222); strain Limosilactobacillus fermentum strain=AGA52 GCF_021582915.1 11 5925 117 5106 1.160400 0.003764 0.000237 0.003244 0.544698 0.003244 9374 1574096 0.003764 17.529506 Not shown (strain-result biased); Filtered out (minCov > 0.0032437665809455078); strain Clostridioides difficile strain=W0023a GCF_002812605.1 23 8783 86 7435 1.181305 0.003723 0.000235 0.003151 0.816047 0.003151 9111 2359240 0.003723 17.785258 Not shown (strain-result biased); Filtered out (minCov > 0.0031514385988708226); strain Akkermansia muciniphila strain=EB-AMDK-34 GCF_010223175.1 14 8190 100 8152 1.004661 0.003716 0.000234 0.003698 0.554068 0.003698 14713 2204183 0.003716 16.412969 Not shown (strain-result biased); Filtered out (minCov > 0.003698422499402273); strain Escherichia coli strain=NCTC9082 GCF_900635205.1 2 156 4 156 1.000000 0.003715 0.000234 0.003715 0.155689 0.003715 1002 41993 0.003715 16.376382 Not shown (strain-result biased); Filtered out (minCov > 0.0037149048650965636); strain Limosilactobacillus fermentum strain=JNU 532 GCF_024800585.1 13 5699 1257 4829 1.180162 0.003705 0.000234 0.003139 0.362021 0.003139 13339 1538220 0.003705 17.819596 Not shown (strain-result biased); Filtered out (minCov > 0.0031393428768316627); strain Clostridioides difficile strain=R0104a GCF_002812585.1 24 8806 5 8806 1.000000 0.003674 0.000232 0.003674 0.920167 0.003674 9570 2396589 0.003674 16.466757 Not shown (strain-result biased); Filtered out (minCov > 0.00367438889187925); strain Escherichia coli O145:H28 str. RM13514 strain=RM13514 GCF_000520035.1 3 456 12 152 3.000000 0.003641 0.000230 0.001214 1.000000 0.001214 152 125247 0.003641 28.687862 Not shown (strain-result biased); Filtered out (minCov > 0.0012136019226009404); strain Escherichia coli strain=LSN03-016011/A GCF_018884585.1 4 212 0 53 4.000000 0.003632 0.000229 0.000908 1.000000 0.000908 53 58368 0.003632 33.170514 Not shown (strain-result biased); Filtered out (minCov > 0.000908031798245614); Filtered out (minLen > 53); Filtered out (maxZscore < 33.17051429911699); strain Akkermansia muciniphila strain=EB-AMDK-18 GCF_004015085.1 13 7991 273 7472 1.069459 0.003584 0.000226 0.003351 0.733844 0.003351 10182 2229475 0.003584 17.244630 Not shown (strain-result biased); Filtered out (minCov > 0.0033514616669843796); strain Escherichia coli strain=BL12 GCF_024971895.1 1 60 0 60 1.000000 0.003579 0.000226 0.003579 1.000000 0.003579 60 16765 0.003579 16.685822 Not shown (strain-result biased); Filtered out (minCov > 0.003578884580972264); strain Clostridioides difficile 2007855 strain=2007855 GCF_000210455.1 23 8552 14 8552 1.000000 0.003570 0.000225 0.003570 0.938337 0.003570 9114 2395301 0.003570 16.705887 Not shown (strain-result biased); Filtered out (minCov > 0.0035703237296690477); strain Clostridioides difficile strain=DSM 104451 GCF_025136135.1 21 8228 61 7369 1.116569 0.003532 0.000223 0.003163 0.943534 0.003163 7810 2329473 0.003532 17.751561 Not shown (strain-result biased); Filtered out (minCov > 0.0031633764375032466); strain Clostridioides difficile QCD-66c26 GCF_000003215.1 26 8335 9 7891 1.056267 0.003487 0.000220 0.003301 0.903688 0.003301 8732 2390647 0.003487 17.376959 Not shown (strain-result biased); Filtered out (minCov > 0.0033007800817100976); strain Clostridioides difficile strain=AK GCF_002954015.1 19 8236 31 8236 1.000000 0.003461 0.000218 0.003461 0.999393 0.003461 8241 2379980 0.003461 16.969761 Not shown (strain-result biased); Filtered out (minCov > 0.003460533281792284); strain Clostridioides difficile strain=020474 GCF_003597775.1 25 8082 15 6423 1.258291 0.003456 0.000218 0.002746 0.738870 0.002746 8693 2338707 0.003456 19.055562 Not shown (strain-result biased); Filtered out (minCov > 0.002746389351038843); strain Limosilactobacillus fermentum strain=LfU21 GCF_002869825.2 9 5115 320 4801 1.065403 0.003423 0.000216 0.003213 0.565822 0.003213 8485 1494461 0.003423 17.614800 Not shown (strain-result biased); Filtered out (minCov > 0.0032125294671456798); strain Akkermansia muciniphila strain=EB-AMDK-38 GCF_010223575.1 18 7860 276 7860 1.000000 0.003407 0.000215 0.003407 0.414710 0.003407 18953 2307197 0.003407 17.103699 Not shown (strain-result biased); Filtered out (minCov > 0.003406731198072813); strain Akkermansia muciniphila strain=EB-AMDK-20 GCF_004015325.1 14 7428 230 7390 1.005142 0.003370 0.000213 0.003353 0.406312 0.003353 18188 2204249 0.003370 17.241652 Not shown (strain-result biased); Filtered out (minCov > 0.003352615788869588); strain Akkermansia muciniphila strain=EB-AMDK-33 GCF_010223155.1 14 7306 73 7290 1.002195 0.003315 0.000209 0.003307 0.522281 0.003307 13958 2204230 0.003315 17.359825 Not shown (strain-result biased); Filtered out (minCov > 0.003307277371236214); strain Clostridioides difficile ATCC 9689 = DSM 1296 strain=DSM 1296T GCF_001077535.1 22 7785 81 6923 1.124512 0.003280 0.000207 0.002917 0.857231 0.002917 8076 2373443 0.003280 18.488766 Not shown (strain-result biased); Filtered out (minCov > 0.002916859600167352); strain Escherichia coli strain=SWHEFF_69 GCF_022353905.1 1 436 1 436 1.000000 0.003269 0.000206 0.003269 1.000000 0.003269 436 133357 0.003269 17.460375 Not shown (strain-result biased); Filtered out (minCov > 0.003269419678007154); strain Akkermansia muciniphila strain=Akk1610 GCF_018847335.1 14 7947 273 7947 1.000000 0.003263 0.000206 0.003263 0.539475 0.003263 14731 2435590 0.003263 17.477963 Not shown (strain-result biased); Filtered out (minCov > 0.003262864439417143); strain Akkermansia muciniphila strain=EB-AMDK-21 GCF_004015345.1 8 7131 150 7131 1.000000 0.003235 0.000204 0.003235 0.680050 0.003235 10486 2204236 0.003235 17.552953 Not shown (strain-result biased); Filtered out (minCov > 0.0032351345318740823); strain Akkermansia muciniphila strain=Akk1990 GCF_018847175.1 11 7323 411 6349 1.153410 0.003233 0.000204 0.002803 0.487634 0.002803 13020 2264926 0.003233 18.861003 Not shown (strain-result biased); Filtered out (minCov > 0.0028031820907173126); strain Clostridioides difficile strain=DSM 28196 GCF_003482035.1 20 7732 4 7732 1.000000 0.003220 0.000203 0.003220 0.921683 0.003220 8389 2401014 0.003220 17.593450 Not shown (strain-result biased); Filtered out (minCov > 0.0032203060873447634); strain Limosilactobacillus fermentum strain=BRD_L14 GCF_026184215.1 9 5063 121 4863 1.041127 0.003086 0.000195 0.002964 0.526413 0.002964 9238 1640771 0.003086 18.341181 Not shown (strain-result biased); Filtered out (minCov > 0.002963850531244153); strain Clostridioides difficile strain=DSM 27638 GCF_003313545.1 22 7503 9 7503 1.000000 0.003080 0.000194 0.003080 0.892046 0.003080 8411 2435937 0.003080 17.990601 Not shown (strain-result biased); Filtered out (minCov > 0.003080128919590285); strain Clostridioides difficile strain=09-00072 GCF_002946195.1 23 7348 24 7348 1.000000 0.003070 0.000194 0.003070 0.786303 0.003070 9345 2393813 0.003070 18.021584 Not shown (strain-result biased); Filtered out (minCov > 0.0030695797875606823); strain Escherichia coli O103:H2 str. 12009 strain=12009 GCF_000010745.1 1 152 4 152 1.000000 0.003068 0.000193 0.003068 1.000000 0.003068 152 49543 0.003068 18.026114 Not shown (strain-result biased); Filtered out (minCov > 0.0030680419029933594); strain Escherichia coli strain=PD4 GCF_024585805.1 1 51 0 51 1.000000 0.003054 0.000193 0.003054 1.000000 0.003054 51 16700 0.003054 18.067955 Not shown (strain-result biased); Filtered out (minCov > 0.003053892215568862); Filtered out (minLen > 51); strain Limosilactobacillus fermentum strain=DM075 GCF_024204625.1 5 4716 149 4102 1.149683 0.003040 0.000192 0.002644 0.702999 0.002644 5835 1551428 0.003040 19.421961 Not shown (strain-result biased); Filtered out (minCov > 0.0026440157068197815); strain Clostridioides difficile BI9 strain=BI9 GCF_000270485.1 21 7303 66 6605 1.105678 0.003035 0.000191 0.002745 0.815432 0.002745 8100 2406169 0.003035 19.060301 Not shown (strain-result biased); Filtered out (minCov > 0.002745027468976618); strain Bifidobacterium adolescentis strain=ZJ2 GCF_009832825.1 6 1979 42 1841 1.074959 0.003024 0.000191 0.002813 0.789790 0.002813 2331 654451 0.003024 18.827817 Not shown (strain-result biased); Filtered out (minCov > 0.0028130448268854353); strain Clostridioides difficile strain=DSM 27640 GCF_003313585.1 19 7253 116 7253 1.000000 0.002977 0.000188 0.002977 0.849795 0.002977 8535 2435997 0.002977 18.299197 Not shown (strain-result biased); Filtered out (minCov > 0.002977425670064454); strain Akkermansia muciniphila strain=Akk0880 GCF_018847535.1 11 7069 153 6650 1.063008 0.002934 0.000185 0.002760 0.531830 0.002760 12504 2409010 0.002934 19.006766 Not shown (strain-result biased); Filtered out (minCov > 0.0027604700686173988); strain Escherichia coli strain=RIVM_C028786 GCF_016776185.1 1 332 2 332 1.000000 0.002910 0.000184 0.002910 0.713978 0.002910 465 114085 0.002910 18.510254 Not shown (strain-result biased); Filtered out (minCov > 0.0029101108822369285); strain Escherichia coli strain=M3 GCF_001901045.1 1 365 2 365 1.000000 0.002907 0.000183 0.002907 0.492578 0.002907 741 125542 0.002907 18.518928 Not shown (strain-result biased); Filtered out (minCov > 0.002907393541603607); strain Akkermansia muciniphila strain=EB-AMDK-31 GCF_010223135.1 14 6562 112 6141 1.068556 0.002845 0.000179 0.002662 0.534046 0.002662 11499 2306481 0.002845 19.354255 Not shown (strain-result biased); Filtered out (minCov > 0.00266249754496135); strain Escherichia coli strain=2313 GCF_027925505.1 2 272 0 272 1.000000 0.002830 0.000178 0.002830 0.928328 0.002830 293 96104 0.002830 18.770283 Not shown (strain-result biased); Filtered out (minCov > 0.0028302672105219345); strain Escherichia coli strain=O177:H21 GCF_001693635.1 1 88 0 88 1.000000 0.002827 0.000178 0.002827 1.000000 0.002827 88 31133 0.002827 18.782548 Not shown (strain-result biased); Filtered out (minCov > 0.0028265827257251148); strain Akkermansia muciniphila strain=EB-AMDK-15 GCF_004015305.1 9 6293 103 6293 1.000000 0.002823 0.000178 0.002823 0.677760 0.002823 9285 2229235 0.002823 18.794691 Not shown (strain-result biased); Filtered out (minCov > 0.0028229415023539465); strain Clostridioides difficile strain=FDAARGOS_267 GCF_002073735.2 23 6668 92 6553 1.017549 0.002810 0.000177 0.002761 0.783009 0.002761 8369 2373338 0.002810 19.004626 Not shown (strain-result biased); Filtered out (minCov > 0.0027610900765082766); strain Clostridioides difficile strain=CDB GCF_022695655.1 18 6561 165 5850 1.121538 0.002807 0.000177 0.002502 0.932420 0.002502 6274 2337761 0.002807 19.965402 Not shown (strain-result biased); Filtered out (minCov > 0.0025023943850547596); strain Clostridioides difficile strain=R2 GCF_002946555.2 18 6555 229 5864 1.117838 0.002790 0.000176 0.002496 0.936741 0.002496 6260 2349409 0.002790 19.991237 Not shown (strain-result biased); Filtered out (minCov > 0.0024959468530170777); strain Escherichia coli strain=503025 GCF_003956465.1 1 148 0 148 1.000000 0.002779 0.000175 0.002779 1.000000 0.002779 148 53251 0.002779 18.942124 Not shown (strain-result biased); Filtered out (minCov > 0.0027792905297553097); strain Limosilactobacillus fermentum strain=MSK408 GCF_029223925.1 9 4274 250 4274 1.000000 0.002778 0.000175 0.002778 0.442351 0.002778 9662 1538253 0.002778 18.944906 Not shown (strain-result biased); Filtered out (minCov > 0.002778476622506181); strain Escherichia coli strain=QA-1986 630 GCF_024508035.1 1 181 3 181 1.000000 0.002717 0.000171 0.002717 0.520115 0.002717 348 66629 0.002717 19.160272 Not shown (strain-result biased); Filtered out (minCov > 0.002716534842185835); strain Limosilactobacillus fermentum strain=ACA-DC 179 GCF_019890875.1 10 4103 118 3230 1.270279 0.002712 0.000171 0.002135 0.410263 0.002135 7873 1512912 0.002712 21.619292 Not shown (strain-result biased); Filtered out (minCov > 0.0021349556352253138); strain Akkermansia muciniphila strain=EB-AMDK-48 GCF_010230935.1 8 6224 132 6224 1.000000 0.002687 0.000169 0.002687 0.665740 0.002687 9349 2316057 0.002687 19.264401 Not shown (strain-result biased); Filtered out (minCov > 0.0026873259164174284); strain Clostridioides difficile strain=BR81 GCF_002007885.1 14 6365 43 5153 1.235203 0.002682 0.000169 0.002171 0.917720 0.002171 5615 2373270 0.002682 21.437370 Not shown (strain-result biased); Filtered out (minCov > 0.002171265806250448); strain Escherichia coli strain=FDAARGOS_1058 GCF_016126995.1 1 260 0 260 1.000000 0.002680 0.000169 0.002680 1.000000 0.002680 260 96998 0.002680 19.289096 Not shown (strain-result biased); Filtered out (minCov > 0.0026804676385080105); strain Clostridioides difficile strain=CD-17-01474 GCF_002945515.1 18 6413 1 6413 1.000000 0.002678 0.000169 0.002678 0.969903 0.002678 6612 2394739 0.002678 19.298172 Not shown (strain-result biased); Filtered out (minCov > 0.00267795363085497); strain Clostridioides difficile strain=Cd1 GCF_018885045.1 16 6576 88 5233 1.256641 0.002677 0.000169 0.002130 0.966925 0.002130 5412 2456237 0.002677 21.641963 Not shown (strain-result biased); Filtered out (minCov > 0.0021304947364606916); strain Escherichia coli strain=E62 GCF_002220215.1 1 101 0 101 1.000000 0.002663 0.000168 0.002663 1.000000 0.002663 101 37925 0.002663 19.351875 Not shown (strain-result biased); Filtered out (minCov > 0.0026631509558338825); strain Escherichia coli strain=FORC_029 GCF_001886895.1 2 190 2 95 2.000000 0.002656 0.000167 0.001328 1.000000 0.001328 95 71541 0.002656 27.423770 Not shown (strain-result biased); Filtered out (minCov > 0.0013279098698648327); strain Clostridioides difficile strain=G89 GCF_024972415.1 14 6408 122 6408 1.000000 0.002649 0.000167 0.002649 0.898612 0.002649 7131 2418743 0.002649 19.402494 Not shown (strain-result biased); Filtered out (minCov > 0.0026493099928351213); strain Akkermansia muciniphila strain=H2 GCF_004101765.1 9 6029 267 6029 1.000000 0.002641 0.000167 0.002641 0.537248 0.002641 11222 2282848 0.002641 19.433079 Not shown (strain-result biased); Filtered out (minCov > 0.002640999313138676); strain Saccharomyces cerevisiae YB210 v1.0 SacceYB210_1 SacceYB210_1 35 23527 2951 23501 1.001106 0.002582 0.000163 0.002579 0.690110 0.002579 34054 9111540 0.002582 19.664908 Not shown (strain-result biased); Filtered out (minCov > 0.002579256634992548); strain Akkermansia muciniphila strain=Akk13715 GCF_018847515.1 13 5868 154 5868 1.000000 0.002577 0.000163 0.002577 0.467346 0.002577 12556 2277062 0.002577 19.673520 Not shown (strain-result biased); Filtered out (minCov > 0.002577004930037039); strain Clostridioides difficile strain=020696 GCF_003597835.1 18 6024 1 6024 1.000000 0.002575 0.000162 0.002575 0.920397 0.002575 6545 2339772 0.002575 19.682692 Not shown (strain-result biased); Filtered out (minCov > 0.0025746098337786757); strain Escherichia coli IHE3034 strain=IHE3034 GCF_000025745.1 2 202 10 101 2.000000 0.002531 0.000160 0.001266 0.926606 0.001266 109 79807 0.002531 28.092140 Not shown (strain-result biased); Filtered out (minCov > 0.001265553146967058); strain Clostridioides difficile strain=DH/NAP11/106/ST-42 GCF_002234355.1 18 5970 51 5970 1.000000 0.002530 0.000160 0.002530 0.808286 0.002530 7386 2359951 0.002530 19.857031 Not shown (strain-result biased); Filtered out (minCov > 0.002529713540662497); strain Clostridioides difficile strain=2015 GCF_018255775.1 16 6029 5 5525 1.091222 0.002517 0.000159 0.002307 0.894447 0.002307 6177 2394982 0.002517 20.796175 Not shown (strain-result biased); Filtered out (minCov > 0.0023069066907392207); strain Akkermansia muciniphila strain=Akk1570 GCF_018847395.1 9 5870 185 5870 1.000000 0.002436 0.000154 0.002436 0.506034 0.002436 11600 2409299 0.002436 20.234692 Not shown (strain-result biased); Filtered out (minCov > 0.002436393324365303); strain Escherichia coli O145:H28 str. RM12581 strain=RM12581 GCF_000671295.1 2 304 8 152 2.000000 0.002426 0.000153 0.001213 1.000000 0.001213 152 125303 0.002426 28.694282 Not shown (strain-result biased); Filtered out (minCov > 0.0012130595436661532); strain Saccharomyces cerevisiae M3839 v1.0 SacceM3839_1 SacceM3839_1 35 23514 220 23514 1.000000 0.002422 0.000153 0.002422 0.716890 0.002422 32800 9710147 0.002422 20.296594 Not shown (strain-result biased); Filtered out (minCov > 0.002421590527929186); strain Saccharomyces cerevisiae M3836 v1.0 SacceM3836_1 SacceM3836_1 35 23529 1219 23529 1.000000 0.002422 0.000153 0.002422 0.701730 0.002422 33530 9716516 0.002422 20.296777 Not shown (strain-result biased); Filtered out (minCov > 0.0024215469824780816); strain Clostridioides difficile strain=SH GCF_024972115.1 17 5880 121 5641 1.042368 0.002417 0.000152 0.002319 0.757588 0.002319 7446 2432613 0.002417 20.742177 Not shown (strain-result biased); Filtered out (minCov > 0.0023189056376826073); strain Escherichia coli strain=SCU-308 GCF_013085865.1 1 79 5 79 1.000000 0.002402 0.000151 0.002402 0.403061 0.002402 196 32889 0.002402 20.379314 Not shown (strain-result biased); Filtered out (minCov > 0.00240201891209827); strain Saccharomyces cerevisiae M3837 v1.0 SacceM3837_1 SacceM3837_1 35 22705 230 22705 1.000000 0.002341 0.000148 0.002341 0.686823 0.002341 33058 9700374 0.002341 20.645463 Not shown (strain-result biased); Filtered out (minCov > 0.0023406314024593277); strain Escherichia coli strain=MFDS1016424 GCF_025677685.1 1 101 0 101 1.000000 0.002304 0.000145 0.002304 1.000000 0.002304 101 43836 0.002304 20.809128 Not shown (strain-result biased); Filtered out (minCov > 0.002304042339629528); strain Akkermansia muciniphila strain=Akk1613 GCF_018847295.1 8 5565 73 5565 1.000000 0.002294 0.000145 0.002294 0.736891 0.002294 7552 2425574 0.002294 20.853354 Not shown (strain-result biased); Filtered out (minCov > 0.0022943022971057573); strain Clostridioides difficile strain=DSM 102978 GCF_003457035.1 12 5434 105 4203 1.292886 0.002294 0.000145 0.001774 0.980863 0.001774 4285 2369237 0.002294 23.721328 Not shown (strain-result biased); Filtered out (minCov > 0.0017739888411332425); strain Escherichia coli strain=2013C-3277 GCF_003018715.1 1 152 4 152 1.000000 0.002272 0.000143 0.002272 1.000000 0.002272 152 66916 0.002272 20.957978 Not shown (strain-result biased); Filtered out (minCov > 0.002271504572897364); strain Akkermansia muciniphila strain=EB-AMDK-26 GCF_010230155.1 7 5177 328 5177 1.000000 0.002270 0.000143 0.002270 0.469527 0.002270 11026 2280696 0.002270 20.965303 Not shown (strain-result biased); Filtered out (minCov > 0.002269921111800959); strain Escherichia coli strain=E597 GCF_011045275.1 1 169 0 169 1.000000 0.002261 0.000143 0.002261 1.000000 0.002261 169 74753 0.002261 21.007747 Not shown (strain-result biased); Filtered out (minCov > 0.002260778831618798); strain Escherichia coli strain=E686 GCF_011045295.1 1 169 0 169 1.000000 0.002260 0.000143 0.002260 1.000000 0.002260 169 74788 0.002260 21.012676 Not shown (strain-result biased); Filtered out (minCov > 0.002259720810825266); strain Escherichia coli strain=2015C-3107 GCF_003018695.1 1 152 4 152 1.000000 0.002248 0.000142 0.002248 1.000000 0.002248 152 67630 0.002248 21.069746 Not shown (strain-result biased); Filtered out (minCov > 0.002247523288481443); strain Clostridioides difficile 630 strain=630 GCF_000009205.2 18 5264 59 4623 1.138655 0.002242 0.000141 0.001969 0.809207 0.001969 5713 2348180 0.002242 22.515200 Not shown (strain-result biased); Filtered out (minCov > 0.0019687587833982063); strain Escherichia coli O10:H32 strain=NMBU-W12E19 GCF_013282315.1 4 212 0 53 4.000000 0.002228 0.000140 0.000557 1.000000 0.000557 53 95165 0.002228 42.362319 Not shown (strain-result biased); Filtered out (minCov > 0.0005569274418115904); Filtered out (minLen > 53); Filtered out (maxZscore < 42.3623186067034); strain Akkermansia muciniphila strain=EB-AMDK-47 GCF_010230725.1 6 5106 231 5106 1.000000 0.002205 0.000139 0.002205 0.635154 0.002205 8039 2316084 0.002205 21.274409 Not shown (strain-result biased); Filtered out (minCov > 0.0022045832534571285); strain Escherichia coli strain=THO-008 GCF_015139155.1 2 172 0 172 1.000000 0.002200 0.000139 0.002200 1.000000 0.002200 172 78182 0.002200 21.296631 Not shown (strain-result biased); Filtered out (minCov > 0.0021999948837328285); strain Escherichia coli strain=2014C-3655 GCF_003018775.1 1 152 4 152 1.000000 0.002200 0.000139 0.002200 1.000000 0.002200 152 69096 0.002200 21.297393 Not shown (strain-result biased); Filtered out (minCov > 0.0021998379066805606); strain Clostridioides difficile strain=020695 GCF_003597815.1 15 5167 9 5167 1.000000 0.002158 0.000136 0.002158 0.899704 0.002158 5743 2394473 0.002158 21.503871 Not shown (strain-result biased); Filtered out (minCov > 0.0021578860985277345); strain Escherichia coli strain=A17 GCF_022493555.1 1 73 0 73 1.000000 0.002136 0.000135 0.002136 1.000000 0.002136 73 34170 0.002136 21.612084 Not shown (strain-result biased); Filtered out (minCov > 0.0021363769388352354); strain Escherichia coli strain=C3 GCF_001900515.1 1 73 0 73 1.000000 0.002104 0.000133 0.002104 1.000000 0.002104 73 34704 0.002104 21.780663 Not shown (strain-result biased); Filtered out (minCov > 0.002103503918856616); strain Akkermansia muciniphila strain=AMUC GCF_018140615.1 10 4530 328 4530 1.000000 0.002097 0.000132 0.002097 0.317138 0.002097 14284 2160430 0.002097 21.815502 Not shown (strain-result biased); Filtered out (minCov > 0.0020968048027476013); strain Clostridioides difficile strain=DSM 29688 GCF_003481905.1 10 4943 29 3993 1.237916 0.002096 0.000132 0.001693 0.900744 0.001693 4433 2357862 0.002096 24.279598 Not shown (strain-result biased); Filtered out (minCov > 0.0016934833336302124); strain Clostridioides difficile strain=R1 GCF_002946515.2 16 4911 171 4741 1.035857 0.002090 0.000132 0.002018 0.789377 0.002018 6006 2349408 0.002090 22.238506 Not shown (strain-result biased); Filtered out (minCov > 0.0020179551614704643); strain Akkermansia muciniphila strain=EB-AMDK-23 GCF_010229495.1 8 4724 229 4724 1.000000 0.002088 0.000132 0.002088 0.427705 0.002088 11045 2262195 0.002088 21.860301 Not shown (strain-result biased); Filtered out (minCov > 0.0020882373093389383); strain Escherichia coli strain=RIVM_C037134 GCF_020883375.1 1 211 0 211 1.000000 0.002084 0.000131 0.002084 1.000000 0.002084 211 101254 0.002084 21.883253 Not shown (strain-result biased); Filtered out (minCov > 0.002083868291623047); strain Akkermansia muciniphila strain=Akk1616 GCF_018847255.1 6 5069 56 5069 1.000000 0.002081 0.000131 0.002081 0.843708 0.002081 6008 2435270 0.002081 21.895756 Not shown (strain-result biased); Filtered out (minCov > 0.002081494043781593); strain Methanobrevibacter smithii strain=CE91-St68 GCF_022846175.1 5 1108 12 912 1.214912 0.002067 0.000130 0.001701 1.000000 0.001701 912 536118 0.002067 24.224960 Not shown (strain-result biased); Filtered out (minCov > 0.00170111803744698); strain Akkermansia muciniphila strain=EB-AMDK-24 GCF_010229695.1 6 4623 49 4623 1.000000 0.002044 0.000129 0.002044 0.937348 0.002044 4932 2262216 0.002044 22.098402 Not shown (strain-result biased); Filtered out (minCov > 0.0020435714361493333); strain Escherichia coli strain=AR_452 GCF_003288415.1 2 58 224 29 2.000000 0.001994 0.000126 0.000997 0.015838 0.000997 1831 29084 0.001994 31.652750 Not shown (strain-result biased); Filtered out (minCov > 0.0009971118140558383); Filtered out (minLen > 29); Filtered out (maxZscore < 31.652749512864407); strain Clostridioides difficile strain=W0022a GCF_002812625.1 10 4606 35 2863 1.608802 0.001981 0.000125 0.001232 0.920283 0.001232 3111 2324763 0.001981 28.478105 Not shown (strain-result biased); Filtered out (minCov > 0.0012315233853945542); strain Clostridioides difficile strain=DSM 102859 GCF_003456975.1 13 4692 80 4692 1.000000 0.001978 0.000125 0.001978 0.919820 0.001978 5101 2372019 0.001978 22.462088 Not shown (strain-result biased); Filtered out (minCov > 0.0019780617271615447); strain Limosilactobacillus fermentum strain=GR1009 GCF_017134335.1 5 2997 33 2997 1.000000 0.001944 0.000123 0.001944 0.345754 0.001944 8668 1541669 0.001944 22.658422 Not shown (strain-result biased); Filtered out (minCov > 0.001943997057734183); strain Akkermansia muciniphila strain=Akk0096 GCF_018847935.1 10 4337 219 4273 1.014978 0.001941 0.000122 0.001912 0.383229 0.001912 11150 2234880 0.001941 22.847837 Not shown (strain-result biased); Filtered out (minCov > 0.0019119594788087055); strain Clostridioides difficile strain=CD4401 GCF_016767055.1 9 4441 112 4441 1.000000 0.001937 0.000122 0.001937 0.997978 0.001937 4450 2292692 0.001937 22.699247 Not shown (strain-result biased); Filtered out (minCov > 0.0019370242492231838); strain Clostridioides difficile strain=DSM 29637 GCF_003482325.1 10 4547 40 3949 1.151431 0.001921 0.000121 0.001668 1.000000 0.001668 3949 2367169 0.001921 24.462932 Not shown (strain-result biased); Filtered out (minCov > 0.0016682374600208096); strain Escherichia coli strain=FDAARGOS_1303 GCF_016904075.1 2 202 10 101 2.000000 0.001906 0.000120 0.000953 0.926606 0.000953 109 105977 0.001906 32.377110 Not shown (strain-result biased); Filtered out (minCov > 0.0009530369797220152); Filtered out (maxZscore < 32.37710962582627); strain Akkermansia muciniphila strain=Akk2030 GCF_018847155.1 8 4306 299 4306 1.000000 0.001901 0.000120 0.001901 0.480688 0.001901 8958 2265092 0.001901 22.913568 Not shown (strain-result biased); Filtered out (minCov > 0.001901026536670475); strain Escherichia coli strain=04-00955 GCF_004564035.1 1 380 0 380 1.000000 0.001896 0.000120 0.001896 1.000000 0.001896 380 200419 0.001896 22.943810 Not shown (strain-result biased); Filtered out (minCov > 0.0018960278217135102); strain Akkermansia muciniphila strain=EB-AMDK-4 GCF_003716955.1 7 3957 262 3957 1.000000 0.001832 0.000116 0.001832 0.448030 0.001832 8832 2160437 0.001832 23.344775 Not shown (strain-result biased); Filtered out (minCov > 0.0018315738899120871); strain Akkermansia muciniphila strain=Akk1376 GCF_018847475.1 7 4170 59 4170 1.000000 0.001831 0.000115 0.001831 0.531278 0.001831 7849 2277052 0.001831 23.346427 Not shown (strain-result biased); Filtered out (minCov > 0.0018313152268810725); strain Akkermansia muciniphila strain=Akk16115 GCF_018847315.1 7 4415 196 4415 1.000000 0.001813 0.000114 0.001813 0.580692 0.001813 7603 2435308 0.001813 23.464838 Not shown (strain-result biased); Filtered out (minCov > 0.0018129123708376929); strain Clostridioides difficile strain=FDAARGOS_723 GCF_009730495.1 13 4321 116 3963 1.090336 0.001803 0.000114 0.001654 0.798348 0.001654 4964 2396703 0.001803 24.571729 Not shown (strain-result biased); Filtered out (minCov > 0.001653521525195237); strain Escherichia coli strain=RIVM_C017887 GCF_016776305.1 2 204 2 204 1.000000 0.001788 0.000113 0.001788 0.367568 0.001788 555 114098 0.001788 23.628456 Not shown (strain-result biased); Filtered out (minCov > 0.001787936686006766); strain Akkermansia muciniphila strain=EB-AMDK-46 GCF_010230515.1 5 4098 95 3402 1.204586 0.001769 0.000112 0.001469 0.721986 0.001469 4712 2316147 0.001769 26.073343 Not shown (strain-result biased); Filtered out (minCov > 0.0014688186889692235); strain Clostridioides difficile strain=DSM 102860 GCF_003457015.1 12 4182 133 4102 1.019503 0.001765 0.000111 0.001731 0.753767 0.001731 5442 2369213 0.001765 24.011978 Not shown (strain-result biased); Filtered out (minCov > 0.0017313766216882991); strain Escherichia coli O169:H41 strain=2014EL-1345-2 GCF_002741435.1 1 159 3 159 1.000000 0.001751 0.000110 0.001751 0.987578 0.001751 161 90828 0.001751 23.879809 Not shown (strain-result biased); Filtered out (minCov > 0.001750561500858766); strain Escherichia coli strain=D217-5 GCF_024584925.1 1 60 0 60 1.000000 0.001747 0.000110 0.001747 1.000000 0.001747 60 34350 0.001747 23.906066 Not shown (strain-result biased); Filtered out (minCov > 0.0017467248908296944); strain Escherichia coli strain=GTEN_97 GCF_026689335.1 1 179 5 179 1.000000 0.001734 0.000109 0.001734 0.172613 0.001734 1037 103239 0.001734 23.994878 Not shown (strain-result biased); Filtered out (minCov > 0.0017338408934608046); strain Clostridioides difficile strain=020688 GCF_003597795.1 11 4146 0 4146 1.000000 0.001731 0.000109 0.001731 1.000000 0.001731 4146 2394739 0.001731 24.012544 Not shown (strain-result biased); Filtered out (minCov > 0.0017312951432285522); strain Clostridioides difficile strain=08ACD0030 GCF_001577795.1 12 3919 31 3807 1.029419 0.001675 0.000106 0.001627 0.805203 0.001627 4728 2340038 0.001675 24.772307 Not shown (strain-result biased); Filtered out (minCov > 0.0016268966572337714); strain Escherichia coli strain=JML285 GCF_005389605.2 1 157 0 157 1.000000 0.001649 0.000104 0.001649 0.987421 0.001649 159 95211 0.001649 24.605680 Not shown (strain-result biased); Filtered out (minCov > 0.0016489691317179737); strain Clostridioides difficile strain=CD099 GCF_024972275.1 12 3992 112 3992 1.000000 0.001642 0.000104 0.001642 0.771550 0.001642 5174 2431056 0.001642 24.657290 Not shown (strain-result biased); Filtered out (minCov > 0.0016420847565831475); strain Clostridioides difficile strain=DSM 28670 GCF_003482225.1 7 3935 109 2558 1.538311 0.001624 0.000102 0.001056 0.852951 0.001056 2999 2422695 0.001624 30.758822 Not shown (strain-result biased); Filtered out (minCov > 0.001055848961590295); Filtered out (maxZscore < 30.758822478785984); strain Escherichia coli strain=NCTC8623 GCF_900636175.1 1 60 0 60 1.000000 0.001610 0.000102 0.001610 1.000000 0.001610 60 37261 0.001610 24.900134 Not shown (strain-result biased); Filtered out (minCov > 0.0016102627412039397); strain Clostridioides difficile strain=020482 GCF_003597895.1 8 3795 1 3795 1.000000 0.001600 0.000101 0.001600 0.933120 0.001600 4067 2371306 0.001600 24.976991 Not shown (strain-result biased); Filtered out (minCov > 0.0016003839234582124); strain Escherichia coli strain=190693 GCF_011022275.1 1 108 0 108 1.000000 0.001599 0.000101 0.001599 0.843750 0.001599 128 67533 0.001599 24.986107 Not shown (strain-result biased); Filtered out (minCov > 0.0015992181600106615); strain Escherichia coli strain=9000 GCF_001890285.2 1 171 3 171 1.000000 0.001586 0.000100 0.001586 0.188326 0.001586 908 107819 0.001586 25.090246 Not shown (strain-result biased); Filtered out (minCov > 0.0015859913373338652); strain Escherichia coli strain=2014C-3050 GCF_003018135.1 1 124 0 124 1.000000 0.001585 0.000100 0.001585 0.855172 0.001585 145 78253 0.001585 25.101247 Not shown (strain-result biased); Filtered out (minCov > 0.0015846037851583964); strain Clostridioides difficile strain=Cd9 GCF_018884885.1 11 3771 25 3307 1.140308 0.001575 0.000099 0.001381 0.907519 0.001381 3644 2394738 0.001575 26.891302 Not shown (strain-result biased); Filtered out (minCov > 0.0013809443872356809); strain Escherichia coli strain=B1720 / O88:H7 / fimH1314 / 7536 (ST Warwick) Faeces GCF_910664845.1 2 238 4 238 1.000000 0.001563 0.000099 0.001563 0.995816 0.001563 239 152268 0.001563 25.274127 Not shown (strain-result biased); Filtered out (minCov > 0.001563033598655003); strain Clostridioides difficile strain=630 delta erm GCF_002080065.1 11 3639 94 3140 1.158917 0.001549 0.000098 0.001337 0.761028 0.001337 4126 2348562 0.001549 27.330380 Not shown (strain-result biased); Filtered out (minCov > 0.001336988335841251); strain Clostridioides difficile strain=12038 GCF_003697225.1 9 3590 107 3105 1.156200 0.001544 0.000097 0.001336 0.802948 0.001336 3867 2324905 0.001544 27.345231 Not shown (strain-result biased); Filtered out (minCov > 0.0013355384413556682); strain Escherichia coli O139:H28 str. E24377A strain=E24377A GCF_000017745.1 2 120 0 60 2.000000 0.001505 0.000095 0.000753 1.000000 0.000753 60 79725 0.001505 36.438304 Not shown (strain-result biased); Filtered out (minCov > 0.0007525870178739417); Filtered out (maxZscore < 36.4383040220041); strain Akkermansia muciniphila strain=EB-AMDK-16 GCF_004015205.1 7 3306 159 3306 1.000000 0.001483 0.000094 0.001483 0.477815 0.001483 6919 2229155 0.001483 25.947554 Not shown (strain-result biased); Filtered out (minCov > 0.0014830731824390857); strain Escherichia coli strain=rl0044 GCF_029674645.1 1 80 2 80 1.000000 0.001483 0.000094 0.001483 0.301887 0.001483 265 53954 0.001483 25.950434 Not shown (strain-result biased); Filtered out (minCov > 0.0014827445601808948); strain Escherichia coli strain=KMi006 GCF_022494765.1 1 30 25 30 1.000000 0.001476 0.000093 0.001476 0.013686 0.001476 2192 20330 0.001476 26.012817 Not shown (strain-result biased); Filtered out (minCov > 0.0014756517461878996); Filtered out (minLen > 30); strain Escherichia coli SMS-3-5 strain=SMS-3-5 GCF_000019645.1 2 170 0 85 2.000000 0.001465 0.000092 0.000733 1.000000 0.000733 85 116025 0.001465 36.932371 Not shown (strain-result biased); Filtered out (minCov > 0.0007326007326007326); Filtered out (maxZscore < 36.932370625238775); strain Clostridioides difficile strain=DSM 28668 GCF_003490105.1 9 3568 48 2752 1.296512 0.001453 0.000092 0.001121 0.810843 0.001121 3394 2455750 0.001453 29.855502 Not shown (strain-result biased); Filtered out (minCov > 0.001120635243815535); strain Clostridioides difficile strain=Cd7 GCF_018884925.1 12 3521 64 2648 1.329683 0.001434 0.000090 0.001079 0.674822 0.001079 3924 2454630 0.001434 30.429839 Not shown (strain-result biased); Filtered out (minCov > 0.0010787776569177432); Filtered out (maxZscore < 30.429838572176173); strain Akkermansia muciniphila strain=Akk14745b GCF_018847435.1 7 3257 120 2921 1.115029 0.001433 0.000090 0.001286 0.570731 0.001286 5118 2272093 0.001433 27.871987 Not shown (strain-result biased); Filtered out (minCov > 0.0012855987849088924); strain Escherichia coli strain=RIVM_C018220 GCF_016776385.1 1 152 3 152 1.000000 0.001411 0.000089 0.001411 1.000000 0.001411 152 107740 0.001411 26.604808 Not shown (strain-result biased); Filtered out (minCov > 0.0014108037868943754); strain Clostridioides difficile strain=FDAARGOS_1469 GCF_019931025.1 9 3183 119 2882 1.104441 0.001410 0.000089 0.001277 0.867028 0.001277 3324 2256762 0.001410 27.965231 Not shown (strain-result biased); Filtered out (minCov > 0.001277050925175096); strain Saccharomyces cerevisiae M3707 Dikaryon SacceM3707_1 SacceM3707_1 19 13639 85 13639 1.000000 0.001408 0.000089 0.001408 0.812619 0.001408 16784 9684106 0.001408 26.627627 Not shown (strain-result biased); Filtered out (minCov > 0.001408390201429022); strain Escherichia coli strain=M8 GCF_001901085.1 2 120 0 60 2.000000 0.001398 0.000088 0.000699 1.000000 0.000699 60 85834 0.001398 37.809611 Not shown (strain-result biased); Filtered out (minCov > 0.000699023696903325); Filtered out (maxZscore < 37.809610771160635); strain Clostridioides difficile strain=Cd8 GCF_018884905.1 7 3372 14 2446 1.378577 0.001388 0.000088 0.001007 0.749387 0.001007 3264 2428801 0.001388 31.495532 Not shown (strain-result biased); Filtered out (minCov > 0.001007081271788014); Filtered out (maxZscore < 31.495531747101943); strain Escherichia coli strain=XJ34 GCF_029224105.1 1 102 2 102 1.000000 0.001350 0.000085 0.001350 0.790698 0.001350 129 75558 0.001350 27.198616 Not shown (strain-result biased); Filtered out (minCov > 0.0013499563249424282); strain Clostridioides difficile strain=DSM 101085 GCF_015732535.1 8 3043 118 2817 1.080227 0.001348 0.000085 0.001248 0.904624 0.001248 3114 2256738 0.001348 28.286286 Not shown (strain-result biased); Filtered out (minCov > 0.0012482618717813056); strain Clostridioides difficile strain=020709 GCF_003597855.1 7 3165 6 3165 1.000000 0.001333 0.000084 0.001333 0.999684 0.001333 3166 2374936 0.001333 27.374710 Not shown (strain-result biased); Filtered out (minCov > 0.0013326674908292265); strain Clostridioides difficile strain=CD10010 GCF_003697205.1 7 3056 102 2656 1.150602 0.001315 0.000083 0.001143 1.000000 0.001143 2656 2323228 0.001315 29.558575 Not shown (strain-result biased); Filtered out (minCov > 0.0011432369100234673); strain Clostridioides difficile strain=CD9701 GCF_016766975.1 7 3005 70 3005 1.000000 0.001310 0.000083 0.001310 0.889053 0.001310 3380 2293056 0.001310 27.605800 Not shown (strain-result biased); Filtered out (minCov > 0.0013104782438806554); strain Methanobrevibacter smithii strain=CE91-St67 GCF_022846155.1 1 699 45 699 1.000000 0.001304 0.000082 0.001304 1.000000 0.001304 699 536121 0.001304 27.676395 Not shown (strain-result biased); Filtered out (minCov > 0.0013038101473361425); strain Escherichia coli strain=TUM18530 GCF_013340785.1 1 60 0 60 1.000000 0.001276 0.000080 0.001276 1.000000 0.001276 60 47017 0.001276 27.975287 Not shown (strain-result biased); Filtered out (minCov > 0.001276134164238467); strain Escherichia coli strain=S103EC GCF_018972265.1 1 156 0 156 1.000000 0.001267 0.000080 0.001267 1.000000 0.001267 156 123128 0.001267 28.076361 Not shown (strain-result biased); Filtered out (minCov > 0.0012669742057046325); strain Clostridioides difficile strain=CD161 GCF_003095675.1 7 3089 55 2502 1.234612 0.001261 0.000080 0.001021 0.998404 0.001021 2506 2450383 0.001261 31.278902 Not shown (strain-result biased); Filtered out (minCov > 0.0010210648702672195); Filtered out (maxZscore < 31.278901902666128); strain Escherichia coli strain=15RDA-Livestock feces-ECO087 GCF_011306375.1 1 76 0 76 1.000000 0.001253 0.000079 0.001253 1.000000 0.001253 76 60655 0.001253 28.232820 Not shown (strain-result biased); Filtered out (minCov > 0.001252988212018795); strain Clostridioides difficile strain=7009825 GCF_016767115.1 6 2901 94 2901 1.000000 0.001234 0.000078 0.001234 0.999655 0.001234 2902 2350242 0.001234 28.445543 Not shown (strain-result biased); Filtered out (minCov > 0.0012343409742486093); strain Akkermansia muciniphila strain=Akk14745a GCF_018847455.1 6 2777 67 2777 1.000000 0.001222 0.000077 0.001222 0.549140 0.001222 5057 2272495 0.001222 28.588937 Not shown (strain-result biased); Filtered out (minCov > 0.0012220048888996456); strain Escherichia coli strain=SI-NP020 GCF_005396225.2 1 157 0 157 1.000000 0.001211 0.000076 0.001211 0.987421 0.001211 159 129615 0.001211 28.715383 Not shown (strain-result biased); Filtered out (minCov > 0.0012112795586930525); strain Escherichia coli strain=M10 GCF_001901125.1 1 52 3 52 1.000000 0.001201 0.000076 0.001201 0.121780 0.001201 427 43313 0.001201 28.843410 Not shown (strain-result biased); Filtered out (minCov > 0.0012005633412601297); Filtered out (minLen > 52); strain Limosilactobacillus fermentum strain=GR1008 GCF_017134355.1 2 1827 16 1827 1.000000 0.001182 0.000075 0.001182 0.608797 0.001182 3001 1545362 0.001182 29.066247 Not shown (strain-result biased); Filtered out (minCov > 0.0011822472663363017); strain Escherichia coli strain=GN06007 GCF_007107705.1 1 87 0 87 1.000000 0.001156 0.000073 0.001156 1.000000 0.001156 87 75272 0.001156 29.397201 Not shown (strain-result biased); Filtered out (minCov > 0.0011558082686789245); strain Escherichia coli strain=SCU-105 GCF_012934455.1 1 148 0 148 1.000000 0.001154 0.000073 0.001154 1.000000 0.001154 148 128246 0.001154 29.419841 Not shown (strain-result biased); Filtered out (minCov > 0.0011540320945682516); strain Escherichia coli strain=SCU-482 GCF_013085025.1 1 87 0 87 1.000000 0.001148 0.000072 0.001148 1.000000 0.001148 87 75758 0.001148 29.492060 Not shown (strain-result biased); Filtered out (minCov > 0.0011483935689960137); strain Clostridioides difficile strain=S-0942 GCF_018885105.1 6 2704 55 2379 1.136612 0.001147 0.000072 0.001009 0.986318 0.001009 2412 2357439 0.001147 31.463263 Not shown (strain-result biased); Filtered out (minCov > 0.0010091459418462153); Filtered out (maxZscore < 31.463263471827013); strain Clostridioides difficile strain=Cd5 GCF_018884945.1 7 2802 50 2557 1.095815 0.001138 0.000072 0.001038 0.942847 0.001038 2712 2463072 0.001138 31.020418 Not shown (strain-result biased); Filtered out (minCov > 0.0010381344922113524); Filtered out (maxZscore < 31.02041791671747); strain Limosilactobacillus fermentum strain=GR1103 GCF_017068315.1 5 1740 1120 1740 1.000000 0.001127 0.000071 0.001127 0.280690 0.001127 6199 1544334 0.001127 29.774961 Not shown (strain-result biased); Filtered out (minCov > 0.0011266992761928443); strain Escherichia coli strain=EC6868 GCF_022918835.1 1 87 0 87 1.000000 0.001116 0.000070 0.001116 1.000000 0.001116 87 77990 0.001116 29.923850 Not shown (strain-result biased); Filtered out (minCov > 0.0011155276317476599); strain Escherichia coli strain=WP7-S17-ESBL-01 GCF_014169455.1 1 85 0 85 1.000000 0.001105 0.000070 0.001105 1.000000 0.001105 85 76934 0.001105 30.068354 Not shown (strain-result biased); Filtered out (minCov > 0.0011048431122780565); Filtered out (maxZscore < 30.06835350252722); strain Escherichia coli strain=89-3506 GCF_003018295.1 1 253 3 253 1.000000 0.001095 0.000069 0.001095 0.278634 0.001095 908 231119 0.001095 30.207844 Not shown (strain-result biased); Filtered out (minCov > 0.0010946741721796997); Filtered out (maxZscore < 30.207843914984977); strain Escherichia coli strain=RIVM_C039205 GCF_020883275.1 1 114 5 114 1.000000 0.001090 0.000069 0.001090 0.109932 0.001090 1037 104578 0.001090 30.271288 Not shown (strain-result biased); Filtered out (minCov > 0.0010900954311614298); Filtered out (maxZscore < 30.271288000231873); strain Clostridioides difficile strain=CD9001 GCF_016767035.1 6 2488 70 2488 1.000000 0.001090 0.000069 0.001090 0.942067 0.001090 2641 2283588 0.001090 30.279380 Not shown (strain-result biased); Filtered out (minCov > 0.0010895135199519353); Filtered out (maxZscore < 30.279379716448318); strain Clostridioides difficile strain=LEM1 GCF_001984465.1 9 2485 38 2485 1.000000 0.001052 0.000066 0.001052 0.628160 0.001052 3956 2361429 0.001052 30.810278 Not shown (strain-result biased); Filtered out (minCov > 0.0010523289076233078); Filtered out (maxZscore < 30.810278146044375); strain Clostridioides difficile strain=CDT4 GCF_003095695.1 7 2527 154 2216 1.140343 0.001038 0.000065 0.000910 0.719714 0.000910 3079 2435368 0.001038 33.135974 Not shown (strain-result biased); Filtered out (minCov > 0.0009099240853948972); Filtered out (maxZscore < 33.13597410343316); strain Saccharomyces cerevisiae M3838 v1.0 SacceM3838_1 SacceM3838_1 16 10096 1034 10096 1.000000 0.001037 0.000065 0.001037 0.590099 0.001037 17109 9732932 0.001037 31.032861 Not shown (strain-result biased); Filtered out (minCov > 0.001037303044961169); Filtered out (maxZscore < 31.032860504017453); strain Limosilactobacillus fermentum strain=PMC101 GCF_024494505.1 4 1603 160 1430 1.120979 0.001037 0.000065 0.000925 0.453393 0.000925 3154 1545944 0.001037 32.864566 Not shown (strain-result biased); Filtered out (minCov > 0.0009250011643371299); Filtered out (maxZscore < 32.86456633335848); strain Clostridioides difficile strain=DSM 29632 GCF_003481965.1 6 2468 12 2066 1.194579 0.001036 0.000065 0.000867 1.000000 0.000867 2066 2381579 0.001036 33.937425 Not shown (strain-result biased); Filtered out (minCov > 0.0008674916935360952); Filtered out (maxZscore < 33.937424621385695); strain Clostridioides difficile strain=DSM 29629 GCF_003482305.1 6 2458 73 2458 1.000000 0.001032 0.000065 0.001032 0.844674 0.001032 2910 2380855 0.001032 31.106506 Not shown (strain-result biased); Filtered out (minCov > 0.0010324022252510127); Filtered out (maxZscore < 31.10650619115987); strain Clostridioides difficile strain=Cd17 GCF_018884725.1 5 2335 131 2335 1.000000 0.001026 0.000065 0.001026 0.907501 0.001026 2573 2275202 0.001026 31.199208 Not shown (strain-result biased); Filtered out (minCov > 0.0010262825015097561); Filtered out (maxZscore < 31.199207973255636); strain Escherichia coli strain=GN02270 GCF_026651105.1 1 85 0 85 1.000000 0.001013 0.000064 0.001013 1.000000 0.001013 85 83925 0.001013 31.406256 Not shown (strain-result biased); Filtered out (minCov > 0.001012809055704498); Filtered out (maxZscore < 31.406256401813806); strain Clostridioides difficile strain=Cd24 GCF_018884645.1 5 2343 8 1801 1.300944 0.000996 0.000063 0.000766 0.959510 0.000766 1877 2352362 0.000996 36.126751 Not shown (strain-result biased); Filtered out (minCov > 0.0007656134557521334); Filtered out (maxZscore < 36.126751075259286); strain Escherichia coli strain=STEC2018-553 GCF_016403675.2 1 300 2 300 1.000000 0.000993 0.000063 0.000993 0.702576 0.000993 427 302098 0.000993 31.717398 Not shown (strain-result biased); Filtered out (minCov > 0.0009930552337321001); Filtered out (maxZscore < 31.717397959689784); strain Clostridioides difficile strain=S-0253 GCF_018885085.1 5 2344 27 2344 1.000000 0.000993 0.000063 0.000993 0.999574 0.000993 2345 2360449 0.000993 31.717779 Not shown (strain-result biased); Filtered out (minCov > 0.0009930314105494335); Filtered out (maxZscore < 31.717778791516547); strain Methanobrevibacter smithii strain=KB11 GCF_002813085.1 3 558 5 558 1.000000 0.000973 0.000061 0.000973 0.996429 0.000973 560 573751 0.000973 32.050392 Not shown (strain-result biased); Filtered out (minCov > 0.0009725473245362535); Filtered out (maxZscore < 32.05039155090478); strain Akkermansia muciniphila strain=Akk16145 GCF_018847275.1 4 2363 103 2303 1.026053 0.000971 0.000061 0.000946 0.639900 0.000946 3599 2434737 0.000971 32.499267 Not shown (strain-result biased); Filtered out (minCov > 0.0009458927185975323); Filtered out (maxZscore < 32.49926683431019); strain Escherichia coli strain=FDAARGOS_403 GCF_002393365.1 1 62 0 62 1.000000 0.000960 0.000061 0.000960 1.000000 0.000960 62 64612 0.000960 32.266531 Not shown (strain-result biased); Filtered out (minCov > 0.0009595740729276296); Filtered out (maxZscore < 32.26653114696503); strain Clostridioides difficile strain=Cd23 GCF_018884665.1 6 2291 16 2291 1.000000 0.000959 0.000060 0.000959 0.864202 0.000959 2651 2388628 0.000959 32.274041 Not shown (strain-result biased); Filtered out (minCov > 0.0009591280015138398); Filtered out (maxZscore < 32.27404074183035); strain Clostridioides difficile strain=Cd29 GCF_018884605.1 4 2228 5 1622 1.373613 0.000953 0.000060 0.000694 1.000000 0.000694 1622 2338609 0.000953 37.957948 Not shown (strain-result biased); Filtered out (minCov > 0.0006935746847805683); Filtered out (maxZscore < 37.95794772263678); strain Escherichia coli strain=266917_2 GCF_002946715.1 1 99 2 99 1.000000 0.000949 0.000060 0.000949 0.990000 0.000949 100 104321 0.000949 32.446070 Not shown (strain-result biased); Filtered out (minCov > 0.0009489939705332579); Filtered out (maxZscore < 32.44607025122572); strain Escherichia coli strain=Combat2C1 GCF_002951675.1 1 101 5 101 1.000000 0.000945 0.000060 0.000945 0.926606 0.000945 109 106848 0.000945 32.510014 Not shown (strain-result biased); Filtered out (minCov > 0.0009452680443246481); Filtered out (maxZscore < 32.51001368961585); strain Escherichia coli strain=W224N GCF_022760215.1 1 101 5 101 1.000000 0.000943 0.000059 0.000943 0.926606 0.000943 109 107143 0.000943 32.554904 Not shown (strain-result biased); Filtered out (minCov > 0.0009426654097794536); Filtered out (maxZscore < 32.55490411870718); strain Escherichia coli strain=XJ6.1 GCF_029227855.1 1 64 0 64 1.000000 0.000941 0.000059 0.000941 1.000000 0.000941 64 68040 0.000941 32.590259 Not shown (strain-result biased); Filtered out (minCov > 0.0009406231628453851); Filtered out (maxZscore < 32.59025928095694); strain Escherichia coli O139:H1 strain=W13-16 GCF_019431335.1 1 81 10 81 1.000000 0.000934 0.000059 0.000934 0.327935 0.000934 247 86710 0.000934 32.703116 Not shown (strain-result biased); Filtered out (minCov > 0.0009341483104601545); Filtered out (maxZscore < 32.70311647474127); strain Clostridioides difficile strain=CD9501 GCF_016766995.1 8 2074 89 2074 1.000000 0.000905 0.000057 0.000905 0.567597 0.000905 3654 2291566 0.000905 33.225015 Not shown (strain-result biased); Filtered out (minCov > 0.0009050579385450823); Filtered out (maxZscore < 33.225015264770946); strain Escherichia coli strain=NIPH17_0020 GCF_006536085.2 2 18 42 9 2.000000 0.000904 0.000057 0.000452 0.042254 0.000452 213 19902 0.000904 47.014182 Not shown (strain-result biased); Filtered out (minCov > 0.0004522158577027434); Filtered out (minLen > 9); Filtered out (maxZscore < 47.014182257413914); strain Clostridioides difficile strain=DSM 28669 GCF_003482125.1 7 2132 48 2132 1.000000 0.000902 0.000057 0.000902 0.707131 0.000902 3015 2364775 0.000902 33.289360 Not shown (strain-result biased); Filtered out (minCov > 0.0009015656880675751); Filtered out (maxZscore < 33.28936045795732); strain Akkermansia muciniphila strain=EB-AMDK-3 GCF_003716935.1 5 1923 106 1923 1.000000 0.000890 0.000056 0.000890 0.365450 0.000890 5262 2160471 0.000890 33.503580 Not shown (strain-result biased); Filtered out (minCov > 0.0008900836900842456); Filtered out (maxZscore < 33.503579802677564); strain Escherichia coli strain=C311 GCF_014854575.1 1 80 0 80 1.000000 0.000888 0.000056 0.000888 1.000000 0.000888 80 90085 0.000888 33.541951 Not shown (strain-result biased); Filtered out (minCov > 0.0008880501748348782); Filtered out (maxZscore < 33.54195134454763); strain Clostridioides difficile strain=M120 GCF_016766955.1 5 2018 59 2018 1.000000 0.000875 0.000055 0.000875 0.968330 0.000875 2084 2305048 0.000875 33.782300 Not shown (strain-result biased); Filtered out (minCov > 0.0008754698383721293); Filtered out (maxZscore < 33.78230018439043); strain Escherichia coli strain=Origami2-DE3 GCF_020410665.1 1 6 4 6 1.000000 0.000874 0.000055 0.000874 0.042254 0.000874 142 6862 0.000874 33.803353 Not shown (strain-result biased); Filtered out (minCov > 0.0008743806470416788); Filtered out (minLen > 6); Filtered out (maxZscore < 33.80335289089925); strain Escherichia coli strain=AVS0193 GCF_030037975.1 1 91 0 91 1.000000 0.000864 0.000054 0.000864 1.000000 0.000864 91 105342 0.000864 34.008887 Not shown (strain-result biased); Filtered out (minCov > 0.0008638529741223824); Filtered out (maxZscore < 34.008887009197984); strain Akkermansia muciniphila strain=Akk0200 GCF_018847795.1 3 1842 104 1842 1.000000 0.000853 0.000054 0.000853 0.496496 0.000853 3710 2160507 0.000853 34.233225 Not shown (strain-result biased); Filtered out (minCov > 0.0008525776588550743); Filtered out (maxZscore < 34.233224808389856); strain Escherichia coli strain=A10 GCF_022493695.1 1 65 1 65 1.000000 0.000818 0.000052 0.000818 0.436242 0.000818 149 79467 0.000818 34.950955 Not shown (strain-result biased); Filtered out (minCov > 0.0008179495891376294); Filtered out (maxZscore < 34.95095464746608); strain Escherichia coli strain=CUVM3 GCF_028551195.1 1 60 0 60 1.000000 0.000809 0.000051 0.000809 1.000000 0.000809 60 74157 0.000809 35.141855 Not shown (strain-result biased); Filtered out (minCov > 0.000809094219021805); Filtered out (maxZscore < 35.141855386419195); strain Escherichia coli strain=RH-024-CS GCF_014216475.1 1 62 0 62 1.000000 0.000792 0.000050 0.000792 1.000000 0.000792 62 78249 0.000792 35.511697 Not shown (strain-result biased); Filtered out (minCov > 0.000792342394152002); Filtered out (maxZscore < 35.51169730048524); strain Escherichia coli O27:H7 strain=B4103-1 GCF_002741475.1 1 60 0 60 1.000000 0.000786 0.000050 0.000786 1.000000 0.000786 60 76365 0.000786 35.661604 Not shown (strain-result biased); Filtered out (minCov > 0.000785700255352583); Filtered out (maxZscore < 35.66160400206362); strain Clostridioides difficile strain=DSM 29627 GCF_003482255.1 7 1867 107 1517 1.230719 0.000778 0.000049 0.000632 0.511463 0.000632 2966 2401148 0.000778 39.772184 Not shown (strain-result biased); Filtered out (minCov > 0.0006317811313588334); Filtered out (maxZscore < 39.77218414306107); strain Clostridioides difficile strain=TW11 GCF_009362915.1 4 1816 39 1816 1.000000 0.000773 0.000049 0.000773 1.000000 0.000773 1816 2349790 0.000773 35.957436 Not shown (strain-result biased); Filtered out (minCov > 0.000772835019299597); Filtered out (maxZscore < 35.95743629167134); strain Escherichia coli ECC-1470 strain=ECC-1470 GCF_000831565.1 1 16 4 16 1.000000 0.000759 0.000048 0.000759 0.090395 0.000759 177 21070 0.000759 36.274991 Not shown (strain-result biased); Filtered out (minCov > 0.0007593735168485999); Filtered out (minLen > 16); Filtered out (maxZscore < 36.27499138525053); strain Akkermansia muciniphila strain=EB-AMDK-17 GCF_004015225.1 4 1690 138 1690 1.000000 0.000758 0.000048 0.000758 0.380888 0.000758 4437 2229281 0.000758 36.305663 Not shown (strain-result biased); Filtered out (minCov > 0.0007580919587974777); Filtered out (maxZscore < 36.30566324186837); strain Escherichia coli strain=F2_81 GCF_900196535.2 1 79 0 79 1.000000 0.000757 0.000048 0.000757 1.000000 0.000757 79 104331 0.000757 36.326926 Not shown (strain-result biased); Filtered out (minCov > 0.0007572054327093578); Filtered out (maxZscore < 36.326926234134554); strain Escherichia coli strain=RM10740 GCF_022117635.1 1 81 10 81 1.000000 0.000741 0.000047 0.000741 0.327935 0.000741 247 109349 0.000741 36.728567 Not shown (strain-result biased); Filtered out (minCov > 0.0007407475148378128); Filtered out (maxZscore < 36.728567278359606); strain Akkermansia muciniphila strain=EB-AMDK-49 GCF_010231195.1 3 1709 84 1709 1.000000 0.000738 0.000047 0.000738 0.685519 0.000738 2493 2316065 0.000738 36.799681 Not shown (strain-result biased); Filtered out (minCov > 0.0007378894806492909); Filtered out (maxZscore < 36.799680717062024); strain Clostridioides difficile strain=Cd11 GCF_018884845.1 5 1789 11 1243 1.439260 0.000732 0.000046 0.000509 0.833669 0.000509 1491 2443395 0.000732 44.325208 Not shown (strain-result biased); Filtered out (minCov > 0.0005087184020594296); Filtered out (maxZscore < 44.32520789242116); strain Clostridioides difficile strain=Cd18 GCF_018884705.1 4 1736 9 1327 1.308214 0.000717 0.000045 0.000548 1.000000 0.000548 1327 2421220 0.000717 42.703416 Not shown (strain-result biased); Filtered out (minCov > 0.0005480708072789751); Filtered out (maxZscore < 42.703416296310955); strain Clostridioides difficile strain=CD21062 GCF_003697245.1 3 1656 52 1656 1.000000 0.000714 0.000045 0.000714 0.919489 0.000714 1801 2318358 0.000714 37.402869 Not shown (strain-result biased); Filtered out (minCov > 0.0007142986544787303); Filtered out (maxZscore < 37.402869377644805); strain Escherichia coli strain=RH-004-WU GCF_014216435.1 1 24 3 24 1.000000 0.000691 0.000044 0.000691 0.096000 0.000691 250 34720 0.000691 38.021924 Not shown (strain-result biased); Filtered out (minCov > 0.0006912442396313364); Filtered out (minLen > 24); Filtered out (maxZscore < 38.021923500352614); strain Escherichia coli strain=08-00022 GCF_001677515.1 1 115 5 115 1.000000 0.000679 0.000043 0.000679 0.586735 0.000679 196 169422 0.000679 38.369712 Not shown (strain-result biased); Filtered out (minCov > 0.0006787784349140017); Filtered out (maxZscore < 38.369711786885965); strain Escherichia coli strain=F9792 GCF_002741555.1 1 60 0 60 1.000000 0.000677 0.000043 0.000677 1.000000 0.000677 60 88640 0.000677 38.423083 Not shown (strain-result biased); Filtered out (minCov > 0.0006768953068592057); Filtered out (maxZscore < 38.42308333974947); strain Clostridioides difficile strain=MT4854 GCF_018603395.1 3 1535 31 1535 1.000000 0.000672 0.000042 0.000672 1.000000 0.000672 1535 2284784 0.000672 38.567585 Not shown (strain-result biased); Filtered out (minCov > 0.0006718359372264511); Filtered out (maxZscore < 38.567585248778855); strain Clostridioides difficile strain=Cd6 GCF_018884965.1 4 1537 4 1537 1.000000 0.000657 0.000041 0.000657 1.000000 0.000657 1537 2338442 0.000657 38.992726 Not shown (strain-result biased); Filtered out (minCov > 0.000657275228549607); Filtered out (maxZscore < 38.992725745040914); strain Clostridioides difficile strain=2016 GCF_016767135.1 4 1544 62 1544 1.000000 0.000657 0.000041 0.000657 0.872809 0.000657 1769 2351094 0.000657 39.009349 Not shown (strain-result biased); Filtered out (minCov > 0.0006567155545460964); Filtered out (maxZscore < 39.00934855405046); strain Escherichia coli strain=RM9088 GCF_008065435.1 1 115 5 115 1.000000 0.000653 0.000041 0.000653 0.586735 0.000653 196 176018 0.000653 39.109990 Not shown (strain-result biased); Filtered out (minCov > 0.00065334227181311); Filtered out (maxZscore < 39.10998982801998); strain Clostridioides difficile strain=DSM 29020 GCF_003482165.1 3 1524 40 1524 1.000000 0.000653 0.000041 0.000653 0.998689 0.000653 1526 2335132 0.000653 39.131047 Not shown (strain-result biased); Filtered out (minCov > 0.0006526397651182032); Filtered out (maxZscore < 39.13104707446961); strain Clostridioides difficile strain=S-0352 GCF_018885065.1 6 1508 17 1508 1.000000 0.000639 0.000040 0.000639 0.659379 0.000639 2287 2360627 0.000639 39.552529 Not shown (strain-result biased); Filtered out (minCov > 0.0006388133322206346); Filtered out (maxZscore < 39.55252861567639); strain Escherichia coli strain=CP52E GCF_024499115.1 1 56 0 56 1.000000 0.000627 0.000040 0.000627 0.982456 0.000627 57 89251 0.000627 39.909496 Not shown (strain-result biased); Filtered out (minCov > 0.0006274439502078408); Filtered out (minLen > 56); Filtered out (maxZscore < 39.90949582671845); strain Escherichia coli strain=NEC18 GCF_022031055.1 1 52 0 52 1.000000 0.000622 0.000039 0.000622 1.000000 0.000622 52 83601 0.000622 40.083806 Not shown (strain-result biased); Filtered out (minCov > 0.0006220021291611345); Filtered out (minLen > 52); Filtered out (maxZscore < 40.083806436783654); strain Clostridioides difficile strain=MT5121 GCF_018603475.1 5 1392 70 1392 1.000000 0.000609 0.000038 0.000609 0.692193 0.000609 2011 2284796 0.000609 40.501561 Not shown (strain-result biased); Filtered out (minCov > 0.0006092447640839708); Filtered out (maxZscore < 40.50156091784129); strain Escherichia coli strain=GF4-3 GCF_013122565.1 1 97 1 97 1.000000 0.000601 0.000038 0.000601 0.989796 0.000601 98 161380 0.000601 40.776358 Not shown (strain-result biased); Filtered out (minCov > 0.0006010658074110794); Filtered out (maxZscore < 40.77635761328107); strain Clostridioides difficile strain=MHS-156 GCF_018603455.1 4 1366 34 1366 1.000000 0.000598 0.000038 0.000598 0.851090 0.000598 1605 2284739 0.000598 40.884913 Not shown (strain-result biased); Filtered out (minCov > 0.0005978801079685688); Filtered out (maxZscore < 40.88491328962131); strain Clostridioides difficile strain=Cd12 GCF_018884825.1 3 1404 11 1404 1.000000 0.000594 0.000037 0.000594 1.000000 0.000594 1404 2364185 0.000594 41.023072 Not shown (strain-result biased); Filtered out (minCov > 0.0005938621554573775); Filtered out (maxZscore < 41.02307216850598); strain Clostridioides difficile strain=DSM 29745 GCF_003482345.1 5 1392 8 1392 1.000000 0.000585 0.000037 0.000585 0.834032 0.000585 1669 2378374 0.000585 41.323141 Not shown (strain-result biased); Filtered out (minCov > 0.000585273804708595); Filtered out (maxZscore < 41.323141355592185); strain Escherichia coli strain=BEC1-S17-ESBL-09 GCF_014169915.1 1 62 0 62 1.000000 0.000580 0.000037 0.000580 1.000000 0.000580 62 106950 0.000580 41.521079 Not shown (strain-result biased); Filtered out (minCov > 0.0005797101449275362); Filtered out (maxZscore < 41.52107898405339); strain Clostridioides difficile strain=Cd15 GCF_018884785.1 4 1411 7 1411 1.000000 0.000576 0.000036 0.000576 1.000000 0.000576 1411 2448307 0.000576 41.643215 Not shown (strain-result biased); Filtered out (minCov > 0.0005763166138886994); Filtered out (maxZscore < 41.64321475610697); strain Akkermansia muciniphila strain=AkkB40 GCF_018846995.1 1 1327 0 1327 1.000000 0.000561 0.000035 0.000561 1.000000 0.000561 1327 2366811 0.000561 42.220614 Not shown (strain-result biased); Filtered out (minCov > 0.0005606700323768987); Filtered out (maxZscore < 42.22061411463636); strain Clostridioides difficile strain=Cd28 GCF_018884625.1 4 1332 24 1215 1.096296 0.000559 0.000035 0.000510 1.000000 0.000510 1215 2382706 0.000559 44.272733 Not shown (strain-result biased); Filtered out (minCov > 0.0005099244304584787); Filtered out (maxZscore < 44.27273311101701); strain Escherichia coli strain=3385 GCF_006088875.1 1 51 0 51 1.000000 0.000552 0.000035 0.000552 1.000000 0.000552 51 92419 0.000552 42.557458 Not shown (strain-result biased); Filtered out (minCov > 0.0005518345794695896); Filtered out (minLen > 51); Filtered out (maxZscore < 42.55745827586465); strain Clostridioides difficile strain=Cd14 GCF_018884765.1 5 1291 24 931 1.386681 0.000549 0.000035 0.000396 0.600645 0.000396 1550 2353093 0.000549 50.264200 Not shown (strain-result biased); Filtered out (minCov > 0.0003956494707179019); Filtered out (maxZscore < 50.264199943084414); strain Clostridioides difficile strain=Cd16 GCF_018884745.1 3 1265 8 1265 1.000000 0.000534 0.000034 0.000534 1.000000 0.000534 1265 2367829 0.000534 43.252764 Not shown (strain-result biased); Filtered out (minCov > 0.0005342446604041086); Filtered out (maxZscore < 43.252763854205526); strain Clostridioides difficile strain=DSM 27639 GCF_003313565.1 5 1236 9 1236 1.000000 0.000529 0.000033 0.000529 0.815842 0.000529 1515 2338639 0.000529 43.486811 Not shown (strain-result biased); Filtered out (minCov > 0.0005285125237370966); Filtered out (maxZscore < 43.48681122833751); strain Escherichia coli strain=BR43-DEC GCF_004118895.1 1 53 0 53 1.000000 0.000518 0.000033 0.000518 1.000000 0.000518 53 102307 0.000518 43.924034 Not shown (strain-result biased); Filtered out (minCov > 0.0005180486183741093); Filtered out (minLen > 53); Filtered out (maxZscore < 43.92403390761123); strain Limosilactobacillus fermentum strain=858 GCF_025809275.1 1 819 3 819 1.000000 0.000515 0.000032 0.000515 1.000000 0.000515 819 1589253 0.000515 44.039526 Not shown (strain-result biased); Filtered out (minCov > 0.0005153364505210939); Filtered out (maxZscore < 44.03952603604918); strain Escherichia coli O25b:H4 strain=O25b:H4 GCF_001874485.1 1 60 0 60 1.000000 0.000508 0.000032 0.000508 1.000000 0.000508 60 118088 0.000508 44.352377 Not shown (strain-result biased); Filtered out (minCov > 0.0005080956574757808); Filtered out (maxZscore < 44.35237686227575); strain Escherichia coli strain=STEC383 GCF_021535005.1 1 26 5 26 1.000000 0.000507 0.000032 0.000507 0.147727 0.000507 176 51253 0.000507 44.387715 Not shown (strain-result biased); Filtered out (minCov > 0.0005072873782998069); Filtered out (minLen > 26); Filtered out (maxZscore < 44.38771486311534); strain Clostridioides difficile strain=CD1801 GCF_016767095.1 4 1197 30 1197 1.000000 0.000501 0.000032 0.000501 0.903396 0.000501 1325 2389104 0.000501 44.664413 Not shown (strain-result biased); Filtered out (minCov > 0.0005010246519197155); Filtered out (maxZscore < 44.66441284105379); strain Escherichia coli strain=LHM10-1 GCF_004924275.1 1 56 0 56 1.000000 0.000501 0.000032 0.000501 0.982456 0.000501 57 111809 0.000501 44.672019 Not shown (strain-result biased); Filtered out (minCov > 0.0005008541351769535); Filtered out (minLen > 56); Filtered out (maxZscore < 44.67201904676221); strain Escherichia coli strain=IPCEC42 GCF_026001125.1 1 60 0 60 1.000000 0.000500 0.000032 0.000500 1.000000 0.000500 60 119887 0.000500 44.689111 Not shown (strain-result biased); Filtered out (minCov > 0.0005004712771192873); Filtered out (maxZscore < 44.68911127631279); strain Clostridioides difficile strain=Cd4 GCF_018884985.1 3 1165 7 1165 1.000000 0.000498 0.000031 0.000498 1.000000 0.000498 1165 2339275 0.000498 44.799122 Not shown (strain-result biased); Filtered out (minCov > 0.0004980175481719764); Filtered out (maxZscore < 44.799122462282206); strain Clostridioides difficile strain=CD9301 GCF_016767015.1 4 1130 45 1130 1.000000 0.000493 0.000031 0.000493 0.752831 0.000493 1501 2290091 0.000493 45.006991 Not shown (strain-result biased); Filtered out (minCov > 0.0004934301737354542); Filtered out (maxZscore < 45.006990607458114); strain Escherichia coli strain=NWU_4 GCF_029854375.1 1 6 4 6 1.000000 0.000487 0.000031 0.000487 0.042254 0.000487 142 12332 0.000487 45.324754 Not shown (strain-result biased); Filtered out (minCov > 0.00048653908530651963); Filtered out (minLen > 6); Filtered out (maxZscore < 45.32475409015843); strain Escherichia coli strain=2013C-3033 GCF_003017765.1 2 160 0 80 2.000000 0.000476 0.000030 0.000238 1.000000 0.000238 80 335848 0.000476 64.785029 Not shown (strain-result biased); Filtered out (minCov > 0.00023820299659369715); Filtered out (maxZscore < 64.78502913482404); strain Escherichia coli strain=STEC711 GCF_009949145.1 1 26 5 26 1.000000 0.000468 0.000029 0.000468 0.147727 0.000468 176 55594 0.000468 46.230193 Not shown (strain-result biased); Filtered out (minCov > 0.00046767636795337625); Filtered out (minLen > 26); Filtered out (maxZscore < 46.230193264043024); strain Escherichia coli strain=STEC17-183 GCF_016404015.2 1 82 4 82 1.000000 0.000464 0.000029 0.000464 0.440860 0.000464 186 176586 0.000464 46.394911 Not shown (strain-result biased); Filtered out (minCov > 0.00046436297328214017); Filtered out (maxZscore < 46.394911411468925); strain Akkermansia muciniphila strain=EB-AMDK-40 GCF_010230375.1 1 1062 0 1062 1.000000 0.000451 0.000028 0.000451 1.000000 0.000451 1062 2356166 0.000451 47.091528 Not shown (strain-result biased); Filtered out (minCov > 0.0004507322489162478); Filtered out (maxZscore < 47.091528460336654); strain Akkermansia muciniphila strain=EB-AMDK-41 GCF_018336995.1 1 1062 0 1062 1.000000 0.000451 0.000028 0.000451 1.000000 0.000451 1062 2356257 0.000451 47.092438 Not shown (strain-result biased); Filtered out (minCov > 0.00045071484137765956); Filtered out (maxZscore < 47.09243824769529); strain Escherichia coli strain=94-3024 GCF_000801185.2 1 51 0 51 1.000000 0.000429 0.000027 0.000429 0.962264 0.000429 53 118984 0.000429 48.290989 Not shown (strain-result biased); Filtered out (minCov > 0.000428629059369327); Filtered out (minLen > 51); Filtered out (maxZscore < 48.29098888864399); strain Escherichia coli O104:H21 str. CFSAN002236 strain=ATCC BAA-178 GCF_000464955.2 1 51 0 51 1.000000 0.000429 0.000027 0.000429 0.962264 0.000429 53 118990 0.000429 48.292207 Not shown (strain-result biased); Filtered out (minCov > 0.00042860744600386585); Filtered out (minLen > 51); Filtered out (maxZscore < 48.292206978993626); strain Clostridioides difficile strain=Cd13 GCF_018884805.1 3 971 5 971 1.000000 0.000410 0.000026 0.000410 0.737282 0.000410 1317 2366475 0.000410 49.357395 Not shown (strain-result biased); Filtered out (minCov > 0.0004103149198702712); Filtered out (maxZscore < 49.357394787259345); strain Escherichia coli strain=FHI_NMBU_10 GCF_016803915.1 1 80 0 80 1.000000 0.000405 0.000026 0.000405 1.000000 0.000405 80 197652 0.000405 49.695573 Not shown (strain-result biased); Filtered out (minCov > 0.0004047517859672556); Filtered out (maxZscore < 49.69557324349927); strain Limosilactobacillus fermentum strain=GR1007 GCF_017134375.1 1 589 1 589 1.000000 0.000381 0.000024 0.000381 0.508197 0.000381 1159 1545355 0.000381 51.212232 Not shown (strain-result biased); Filtered out (minCov > 0.0003811421971003426); Filtered out (maxZscore < 51.21223193232903); strain Escherichia coli strain=AVS0787 GCF_029987955.1 1 52 0 52 1.000000 0.000373 0.000024 0.000373 1.000000 0.000373 52 139363 0.000373 51.759614 Not shown (strain-result biased); Filtered out (minCov > 0.0003731262960757159); Filtered out (minLen > 52); Filtered out (maxZscore < 51.75961449149029); strain Clostridioides difficile strain=020477 GCF_003597875.1 2 819 2 819 1.000000 0.000350 0.000022 0.000350 0.927520 0.000350 883 2339481 0.000350 53.436964 Not shown (strain-result biased); Filtered out (minCov > 0.0003500776454264856); Filtered out (maxZscore < 53.4369643365822); strain Clostridioides difficile strain=Cd21 GCF_018884685.1 2 797 7 797 1.000000 0.000336 0.000021 0.000336 1.000000 0.000336 797 2372504 0.000336 54.550829 Not shown (strain-result biased); Filtered out (minCov > 0.0003359319942137084); Filtered out (maxZscore < 54.55082926639329); strain Clostridioides difficile strain=CBA7204 GCF_009867095.1 2 730 3 730 1.000000 0.000312 0.000020 0.000312 1.000000 0.000312 730 2340116 0.000312 56.609525 Not shown (strain-result biased); Filtered out (minCov > 0.0003119503477605384); Filtered out (maxZscore < 56.60952531301056); strain Escherichia coli strain=EE72d GCF_016780725.1 1 30 31 30 1.000000 0.000301 0.000019 0.000301 0.013686 0.000301 2192 99661 0.000301 57.628407 Not shown (strain-result biased); Filtered out (minCov > 0.000301020459357221); Filtered out (minLen > 30); Filtered out (maxZscore < 57.62840734684009); strain Escherichia coli strain=RIVM_C028613 GCF_016776085.1 1 30 11 30 1.000000 0.000299 0.000019 0.000299 0.013686 0.000299 2192 100248 0.000299 57.797924 Not shown (strain-result biased); Filtered out (minCov > 0.00029925784055542256); Filtered out (minLen > 30); Filtered out (maxZscore < 57.797923838144904); strain Escherichia coli O170:H18 strain=CFIAFB20120266 GCF_018986815.1 1 45 35 45 1.000000 0.000269 0.000017 0.000269 0.188285 0.000269 239 167528 0.000269 61.006921 Not shown (strain-result biased); Filtered out (minCov > 0.0002686118141445012); Filtered out (minLen > 45); Filtered out (maxZscore < 61.00692128311709); strain Clostridioides difficile strain=DSM 28666 GCF_003482065.1 1 615 0 615 1.000000 0.000265 0.000017 0.000265 1.000000 0.000265 615 2323433 0.000265 61.456813 Not shown (strain-result biased); Filtered out (minCov > 0.00026469452745140487); Filtered out (maxZscore < 61.456812782623004); strain Escherichia coli strain=S21EC GCF_018972225.1 1 30 11 30 1.000000 0.000235 0.000015 0.000235 0.013686 0.000235 2192 127550 0.000235 65.197137 Not shown (strain-result biased); Filtered out (minCov > 0.00023520188161505292); Filtered out (minLen > 30); Filtered out (maxZscore < 65.19713695145414); strain Escherichia coli strain=SaT040 GCF_001566615.1 1 30 11 30 1.000000 0.000230 0.000015 0.000230 0.013686 0.000230 2192 130273 0.000230 65.889554 Not shown (strain-result biased); Filtered out (minCov > 0.00023028563094424785); Filtered out (minLen > 30); Filtered out (maxZscore < 65.8895540532286); strain Escherichia coli strain=1579 GCF_024918815.1 1 16 5 16 1.000000 0.000180 0.000011 0.000180 0.100629 0.000180 159 89048 0.000180 74.595576 Not shown (strain-result biased); Filtered out (minCov > 0.0001796783757074836); Filtered out (minLen > 16); Filtered out (maxZscore < 74.59557627634497); strain Clostridioides difficile strain=ATCC 43255 GCF_015238635.1 1 403 1 403 1.000000 0.000167 0.000011 0.000167 1.000000 0.000167 403 2411580 0.000167 77.350304 Not shown (strain-result biased); Filtered out (minCov > 0.00016711035918360578); Filtered out (maxZscore < 77.35030367689703); strain Escherichia coli strain=WP2-W18-ESBL-10 GCF_014157395.1 1 8 1 8 1.000000 0.000102 0.000006 0.000102 0.017204 0.000102 465 78060 0.000102 98.774997 Not shown (strain-result biased); Filtered out (minCov > 0.00010248526774276198); Filtered out (minLen > 8); Filtered out (maxZscore < 98.77499683624394); strain Clostridioides difficile strain=Cd10 GCF_018884865.1 1 222 0 222 1.000000 0.000091 0.000006 0.000091 1.000000 0.000091 222 2445389 0.000091 104.948872 Not shown (strain-result biased); Filtered out (minCov > 9.078310240211271e-05); Filtered out (maxZscore < 104.9488721509944); strain Clostridioides difficile strain=Cd3 GCF_018885005.1 1 206 0 206 1.000000 0.000080 0.000005 0.000080 1.000000 0.000080 206 2585442 0.000080 112.025396 Not shown (strain-result biased); Filtered out (minCov > 7.967689857285524e-05); Filtered out (maxZscore < 112.02539587249112); strain Escherichia coli strain=FDAARGOS_1289 GCF_016903315.1 1 8 2 8 1.000000 0.000072 0.000005 0.000072 0.017204 0.000072 465 110875 0.000072 117.721600 Not shown (strain-result biased); Filtered out (minCov > 7.21533258173619e-05); Filtered out (minLen > 8); Filtered out (maxZscore < 117.72159954740677); strain Akkermansia muciniphila strain=EB-AMDK-39 GCF_010231335.1 1 120 48 120 1.000000 0.000051 0.000003 0.000051 0.217391 0.000051 552 2356254 0.000051 140.122982 Not shown (strain-result biased); Filtered out (minCov > 5.092829550634185e-05); Filtered out (maxZscore < 140.12298169822108); strain Spathaspora suhii UFMG-HMD-16.2 v1.1 Spasuh1_1 Spasuh1_1 1 5 9 5 1.000000 0.000001 0.000000 0.000001 0.031646 0.000001 158 8765994 0.000001 1324.083759 Not shown (strain-result biased); Filtered out (minCov > 5.703859710604411e-07); Filtered out (minLen > 5); Filtered out (maxZscore < 1324.083758679941);