╭──────────────────────────────────────────────────────────────────────────────╮
│  Executing geNomad annotate (v1.7.1). This will perform gene calling in the  │
│  input sequences and annotate the predicted proteins with geNomad's          │
│  markers.                                                                    │
│  ──────────────────────────────────────────────────────────────────────────  │
│  Outputs:                                                                    │
│    /expanse/projects/nmdc/edge_app/test/nmdc-edge/io/projects/rNXOkOpGri4Lg  │
│    iMH/output/virus_plasmid/metag_1_contigs_annotate                         │
│    ├── metag_1_contigs_annotate.json (execution parameters)                  │
│    ├── metag_1_contigs_genes.tsv (gene annotation data)                      │
│    ├── metag_1_contigs_taxonomy.tsv (taxonomic assignment)                   │
│    ├── metag_1_contigs_mmseqs2.tsv (MMseqs2 output file)                     │
│    └── metag_1_contigs_proteins.faa (protein FASTA file)                     │
╰──────────────────────────────────────────────────────────────────────────────╯
[13:41:27] Executing genomad annotate.                                          
[13:41:27] Creating the                                                         
           /expanse/projects/nmdc/edge_app/test/nmdc-edge/io/projects/rNXOkOpGri
           4LgiMH/output/virus_plasmid/metag_1_contigs_annotate directory.      
[13:41:39] Proteins predicted with pyrodigal-gv were written to                 
           metag_1_contigs_proteins.faa.                                        
[13:43:43] Proteins annotated with MMseqs2 and geNomad database (v1.6) were     
           written to metag_1_contigs_mmseqs2.tsv.                              
[13:43:43] Deleting metag_1_contigs_mmseqs2.                                    
[13:43:45] Gene data was written to metag_1_contigs_genes.tsv.                  
[13:43:46] Taxonomic assignment data was written to                             
           metag_1_contigs_taxonomy.tsv.                                        
[13:43:46] geNomad annotate finished!