╭──────────────────────────────────────────────────────────────────────────────╮
│  Executing geNomad find-proviruses (v1.7.1). This will find putative         │
│  proviral regions within the input sequences.                                │
│  ──────────────────────────────────────────────────────────────────────────  │
│  Outputs:                                                                    │
│    /expanse/projects/nmdc/edge_app/test/nmdc-edge/io/projects/rNXOkOpGri4Lg  │
│    iMH/output/virus_plasmid/metag_1_contigs_find_proviruses                  │
│    ├── metag_1_contigs_find_proviruses.json (execution parameters)           │
│    ├── metag_1_contigs_provirus.tsv (provirus data)                          │
│    ├── metag_1_contigs_provirus.fna (provirus nucleotide sequences)          │
│    ├── metag_1_contigs_provirus_proteins.faa (provirus protein sequences)    │
│    ├── metag_1_contigs_provirus_genes.tsv (provirus gene annotation data)    │
│    ├── metag_1_contigs_provirus_taxonomy.tsv (provirus taxonomic             │
│    │   assignment)                                                           │
│    ├── metag_1_contigs_provirus_mmseqs2.tsv (MMseqs2 output file)            │
│    └── metag_1_contigs_provirus_aragorn.tsv (Aragorn output file)            │
╰──────────────────────────────────────────────────────────────────────────────╯
[13:43:46] Executing genomad find-proviruses.                                   
[13:43:46] Creating the                                                         
           /expanse/projects/nmdc/edge_app/test/nmdc-edge/io/projects/rNXOkOpGri
           4LgiMH/output/virus_plasmid/metag_1_contigs_find_proviruses          
           directory.                                                           
[13:44:00] Integrases identified with MMseqs2 and geNomad database (v1.6) were  
           written to metag_1_contigs_provirus_mmseqs2.tsv.                     
[13:44:00] Deleting metag_1_contigs_provirus_mmseqs2.                           
[13:44:01] Deleting metag_1_contigs_provirus_mmseqs2_input.faa.                 
[13:44:07] tRNAs identified with Aragorn were written to                        
           metag_1_contigs_provirus_aragorn.tsv.                                
[13:44:07] Deleting metag_1_contigs_provirus_aragorn_input.fna.                 
[13:44:08] Provirus regions identified.                                         
[13:44:08] Provirus data was written to metag_1_contigs_provirus.tsv.           
[13:44:08] Provirus nucleotide sequences were written to                        
           metag_1_contigs_provirus.fna.                                        
[13:44:08] Provirus protein sequences were written to                           
           metag_1_contigs_provirus_proteins.faa.                               
[13:44:08] Provirus gene data was written to metag_1_contigs_provirus_genes.tsv.
[13:44:08] Taxonomic assignment data was written to                             
           metag_1_contigs_provirus_taxonomy.tsv.                               
[13:44:08] geNomad find-proviruses finished!