╭──────────────────────────────────────────────────────────────────────────────╮ │ Executing geNomad marker-classification (v1.7.1). This will classify the │ │ input sequences into chromosome, plasmid, or virus based on the presence │ │ of geNomad markers and other gene-related features. │ │ ────────────────────────────────────────────────────────────────────────── │ │ Outputs: │ │ /expanse/projects/nmdc/edge_app/test/nmdc-edge/io/projects/rNXOkOpGri4Lg │ │ iMH/output/virus_plasmid/metag_1_contigs_marker_classification │ │ ├── metag_1_contigs_marker_classification.json (execution parameters) │ │ ├── metag_1_contigs_features.tsv (sequence feature data: tabular format) │ │ ├── metag_1_contigs_features.npz (sequence feature data: binary format) │ │ ├── metag_1_contigs_marker_classification.tsv (sequence classification: │ │ │ tabular format) │ │ ├── metag_1_contigs_marker_classification.npz (sequence classification: │ │ │ binary format) │ │ ├── metag_1_contigs_provirus_features.tsv (provirus feature data: │ │ │ tabular format) │ │ ├── metag_1_contigs_provirus_features.npz (provirus feature data: binary │ │ │ format) │ │ ├── metag_1_contigs_provirus_marker_classification.tsv (provirus │ │ │ classification: tabular format) │ │ └── metag_1_contigs_provirus_marker_classification.npz (provirus │ │ classification: binary format) │ ╰──────────────────────────────────────────────────────────────────────────────╯ [13:44:09] Executing genomad marker-classification. [13:44:09] Creating the /expanse/projects/nmdc/edge_app/test/nmdc-edge/io/projects/rNXOkOpGri 4LgiMH/output/virus_plasmid/metag_1_contigs_marker_classification directory. [13:44:09] Sequence features computed. [13:44:09] Sequence features in binary format written to metag_1_contigs_features.npz. [13:44:09] Sequence features in tabular format written to metag_1_contigs_features.tsv. [13:44:10] Provirus features computed. [13:44:10] Provirus features in binary format written to metag_1_contigs_provirus_features.npz. [13:44:10] Provirus features in tabular format written to metag_1_contigs_provirus_features.tsv. [13:44:10] Sequences classified. [13:44:10] Sequence classification in binary format written to metag_1_contigs_marker_classification.npz. [13:44:10] Sequence classification in tabular format written to metag_1_contigs_marker_classification.tsv. [13:44:11] Proviruses classified. [13:44:11] Provirus classification in binary format written to metag_1_contigs_provirus_marker_classification.npz. [13:44:11] Provirus classification in tabular format written to metag_1_contigs_provirus_marker_classification.tsv. [13:44:11] geNomad marker-classification finished!