╭──────────────────────────────────────────────────────────────────────────────╮
│  Executing geNomad summary (v1.7.1). This will summarize the results across  │
│  modules into a classification report.                                       │
│  ──────────────────────────────────────────────────────────────────────────  │
│  Outputs:                                                                    │
│    /expanse/projects/nmdc/edge_app/test/nmdc-edge/io/projects/rNXOkOpGri4Lg  │
│    iMH/output/virus_plasmid/metag_1_contigs_summary                          │
│    ├── metag_1_contigs_summary.json (execution parameters)                   │
│    ├── metag_1_contigs_virus_summary.tsv (virus classification summary)      │
│    ├── metag_1_contigs_plasmid_summary.tsv (plasmid classification summary)  │
│    ├── metag_1_contigs_virus.fna (virus nucleotide FASTA file)               │
│    ├── metag_1_contigs_plasmid.fna (plasmid nucleotide FASTA file)           │
│    ├── metag_1_contigs_virus_proteins.faa (virus protein FASTA file)         │
│    ├── metag_1_contigs_plasmid_proteins.faa (plasmid protein FASTA file)     │
│    ├── metag_1_contigs_virus_genes.tsv (virus gene annotation data)          │
│    └── metag_1_contigs_plasmid_genes.tsv (plasmid gene annotation data)      │
╰──────────────────────────────────────────────────────────────────────────────╯
[13:45:27] Executing genomad summary.                                           
[13:45:27] Creating the                                                         
           /expanse/projects/nmdc/edge_app/test/nmdc-edge/io/projects/rNXOkOpGri
           4LgiMH/output/virus_plasmid/metag_1_contigs_summary directory.       
[13:45:27] Using scores from aggregated-classification.                         
[13:45:27] 31 plasmid(s) and 9 virus(es) were identified.                       
[13:45:28] Nucleotide sequences were written to metag_1_contigs_plasmid.fna and 
           metag_1_contigs_virus.fna.                                           
[13:45:28] Protein sequences were written to                                    
           metag_1_contigs_plasmid_proteins.faa and                             
           metag_1_contigs_virus_proteins.faa.                                  
[13:45:28] Gene annotation data was written to metag_1_contigs_plasmid_genes.tsv
           and metag_1_contigs_virus_genes.tsv.                                 
[13:45:28] Summary files were written to metag_1_contigs_plasmid_summary.tsv and
           metag_1_contigs_virus_summary.tsv.                                   
[13:45:28] geNomad summary finished!