members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 3060 27 2447 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliBradyrhizobium sp. S23321Klebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLStreptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4Serratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 167211 2908 1 2 superkingdom 163496 1 0 Bacteria 182 1783270 clade 1792 0 1 456828 phylum 1 0 1 genus 456826 1 0 1 0 1 456827 species Candidatus Cloacimonas acidaminovorans 0 14 phylum 65842 2 Fibrobacteria 2 1 204430 class 14 3 0 0 11 218872 order 1 11 0 1 204431 family 832 genus 1 0 11 Fibrobacter succinogenes 833 species 1 0 11 1470 0 173 68336 clade 0 1276 976 phylum 153 1100069 order 4 1 7 0 208 Bacteroidetes Order II. Incertae sedis 563843 family 3 0 201 146918 genus 1 0 42 Salinibacter ruber 42 0 1 species 146919 1196022 no rank 1 0 76 76 0 1 1779382 species Rhodothermaceae bacterium RA 29548 genus 1 0 83 Rhodothermus marinus 0 83 species 29549 1 0 131 1853228 class 10 Chitinophagales 10 1 1853229 order 131 0 1 Chitinophagaceae 1 9 family 563835 130 1 0 genus 79328 2 0 20 Chitinophagaceae bacterium 13 11 0 1 species 2029983 Chitinophaga pinensis 79329 species 1 0 9 1 genus 1769012 7 0 no rank 2636138 1 0 7 7 0 1 species 1850526 Arachidicoccus sp. BS20 379899 genus 2 0 48 18 0 1 446683 species Niabella soli Niabella ginsenosidivorans 1 1176587 species 30 0 0 18 genus 354354 1 1 species 354356 18 0 Niastella koreensis 1 genus 649460 20 0 0 20 species 477680 1 Filimonas lacunae 398041 genus 1 0 16 Flavisolibacter tropicus 0 16 species 1492898 1 138 0 37 class 200643 1970189 order 3 0 16 0 3 1970190 family 1 0 3 genus 1970191 1 1 1307839 species 3 0 Salinivirga cyanobacteriivorans 1573805 family 1 0 11 11 0 1 genus 2060722 11 0 1 species 1717717 Marinifilaceae bacterium SPP2 1 family 1471398 2 0 genus 1471399 1 0 2 Draconibacterium orientale 1 species 1168034 2 0 122 0 2 1 34 order 171549 Bacteroidales 15 0 2 family 171550 0 1 genus 1611681 1 1 1433126 species 1 0 Mucinivorans hirudinis 14 0 1 239759 genus Alistipes finegoldii 0 14 214856 species 1 0 24 family 2005525 4 0 9 genus 375288 2 3 0 1 no rank 2649774 Parabacteroides sp. CT06 1 2025876 species 3 0 1 species 823 6 0 Parabacteroides distasonis 15 0 2 genus 195950 no rank 2620507 1 0 13 1 712710 species 13 0 Tannerella sp. oral taxon HOT-286 Tannerella forsythia 1 28112 species 2 0 0 6 2005523 family 1 346096 genus 1 0 6 1 185300 species 6 0 Paludibacter propionicigenes 4 no rank 333046 9 0 genus 909656 3 0 7 Bacteroides salanitronis 0 1 species 376805 1 Bacteroides dorei 357276 species 1 0 2 821 species 1 0 4 Bacteroides vulgatus 511434 genus 1 0 2 1 511435 species 2 0 Candidatus Azobacteroides pseudotrichonymphae 2005519 family 1 0 6 0 6 397864 genus 1 Barnesiella viscericola 397865 species 1 0 6 4 0 1 family 1853231 genus 283168 1 0 4 Odoribacter splanchnicus 1 28118 species 4 0 0 6 family 171551 2 2 836 genus 6 0 4 0 1 28123 species Porphyromonas asaccharolytica 1 species 837 2 0 Porphyromonas gingivalis 1 family 2005520 1 0 1 307628 genus 1 0 Petrimonas mucosa 1 1642646 species 1 0 25 0 8 family 815 8 816 genus 25 0 Bacteroides cellulosilyticus 0 3 246787 species 1 Bacteroides zoogleoformans 0 2 species 28119 1 0 4 species 28113 1 Bacteroides heparinolyticus 4 0 1 species 817 Bacteroides fragilis species 47678 1 0 3 Bacteroides caccae Bacteroides caecimuris 1 1796613 species 4 0 Bacteroides ovatus 28116 species 1 0 1 Bacteroides thetaiotaomicron 0 4 species 818 1 0 23 171552 family 8 838 genus 8 0 23 1 0 1 2638335 no rank 1 0 1 652716 species Prevotella sp. oral taxon 299 Prevotella jejuni species 1177574 1 0 1 76123 species 1 0 3 Prevotella enoeca 1 species 28129 2 0 Prevotella denticola 1 28132 species 1 0 Prevotella melaninogenica Prevotella fusca 1 589436 species 1 0 8 0 1 species 52227 Prevotella dentalis 1 species 839 6 0 Prevotella ruminicola 1 0 1 185291 no rank 1 1400053 species 1 0 Bacteroidales bacterium CF class 117743 55 0 173 0 173 200644 order 55 4 0 1 family 1333713 1 267986 genus 4 0 0 4 253245 species 1 Owenweeksia hongkongensis family 39782 3 0 4 0 4 34098 genus 3 3 0 2 no rank 2647581 0 1 1316444 species 1 Blattabacterium sp. (Nauphoeta cinerea) 2 0 1 624186 species Blattabacterium sp. (Blattella germanica) Blattabacterium punctulatus 1 0 1 164514 species 1 0 113 family 49546 1 37 Flavobacteriaceae 0 2 286104 genus 2 2615021 no rank 2 0 2 1 0 1 species 754409 Winogradskyella sp. PG-2 1936080 species 1 0 1 Winogradskyella sp. J14-2 1 0 1 1649495 genus 1 no rank 2622645 1 0 Seonamhaeicola sp. S2-3 1 0 1 species 1936081 genus 389486 1 0 1 no rank 2648869 1 0 1 1 1453352 species 1 0 Sediminicola sp. YIK13 genus 261827 1 0 4 4 0 1 species 1736674 Algibacter alginicilyticus 2 0 1 326319 genus 0 2 no rank 2615033 1 species 313590 1 0 2 Dokdonia sp. MED134 1 genus 225842 3 0 1 no rank 2644710 3 0 Formosa sp. Hel3_A1_48 0 3 species 1336795 1 2 0 1 1518147 genus Wenyingzhuangia fucanilytica 2 0 1 1790137 species 2 genus 104264 7 0 Cellulophaga baltica 1 76594 species 1 0 0 6 59600 species 1 Cellulophaga algicola 9 0 1 61432 no rank Flavobacteriaceae bacterium 3519-10 9 0 1 species 531844 1 178469 genus 1 0 Arenibacter algicola 0 1 616991 species 1 3 genus 292691 15 0 5 0 1 1486245 species Gramella flava 2126553 species 1 0 8 Gramella sp. SH35 Gramella sp. LPB0144 0 2 species 1913577 1 0 1 393005 genus 1 1 2069432 species 1 0 Tamlana sp. UJ94 1 111500 genus 2 0 Muricauda ruestringensis 0 2 species 111501 1 genus 83612 1 0 5 1 57029 species 5 0 Psychroflexus torquis 12 0 1 genus 252306 1 species 252307 12 0 Robiginitalea biformata 3 0 1 genus 1209327 1 1803846 species 3 0 Flavivirga eckloniae genus 291183 1 0 2 1 2647285 no rank 2 0 1 983544 species 2 0 Lacinutrix sp. 5H-3-7-4 1 143222 genus 1 0 1 0 1 no rank 2633436 Salegentibacter sp. T436 1 species 1729720 1 0 3 252356 genus 10 0 2 no rank 2615042 7 0 species 1644130 1 0 5 Maribacter sp. 1_2014MBL_MicDiv Maribacter sp. T28 1836467 species 1 0 2 3 0 1 species 1178778 Maribacter cobaltidurans 4 0 1 genus 112040 63186 species 1 0 4 Zobellia galactanivorans 6 0 1 358023 genus species 1622118 1 0 6 Lutibacter profundi 1 216431 genus 1 0 Croceibacter atlanticus 0 1 313588 species 1 4 1016 genus 10 0 1 0 1 28188 species Capnocytophaga canimorsus 1 1848904 species 3 0 Capnocytophaga stomatis Capnocytophaga ochracea 0 2 1018 species 1 Capnocytophaga sputigena 1019 species 1 0 4 237 genus 3 0 6 1 996 species 1 0 Flavobacterium columnare Flavobacterium indicum 3 0 1 species 312277 Flavobacterium psychrophilum 0 2 species 96345 1 2700084 genus 1 0 2 Lutibacter sp. LPB0138 1 species 1850246 2 0 0 52 family 2762318 14 0 20 2782232 no rank 7 6 59732 genus 17 0 0 2 1265445 species 1 Chryseobacterium camelliae 5 0 1 1324352 species Chryseobacterium gallinarum Chryseobacterium indologenes 1 species 253 4 0 no rank 2593645 3 0 6 Chryseobacterium sp. StRB126 0 1 878220 species 1 0 3 species 2015076 1 Chryseobacterium sp. T16E-39 0 2 1721091 species 1 Chryseobacterium sp. IHB B 17019 1 genus 2782228 3 0 3 0 1 species 536441 Chryseobacterium taklimakanense 7 0 1 genus 1013 Weeksella virosa species 1014 1 0 7 0 24 genus 308865 5 Elizabethkingia genomosp. 3 species 1756149 1 0 1 Elizabethkingia miricola species 172045 1 0 5 Elizabethkingia genomosp. 4 1 1756150 species 3 0 species 1117645 1 0 7 Elizabethkingia anophelis Elizabethkingia meningoseptica 1 species 238 8 0 genus 34084 1 0 1 0 1 34085 species 1 Riemerella anatipestifer 0 10 1937959 class 2 2 1936988 order 10 0 6 0 1 1937961 family 1 2349 genus 6 0 Haliscomenobacter hydrossis 0 6 species 2350 1 4 0 1 family 89374 4 0 1 genus 1007 4 0 1 1008 species Saprospira grandis 768503 class 31 0 476 Cytophagales 0 4 476 768507 order 31 1 1 2762301 family 4 0 0 4 genus 869806 1 Marivirga tractuosa 4 0 1 species 1006 2 family 563798 8 0 0 1 genus 246875 1 Algoriphagus sp. M8-2 1 1727163 species 1 0 0 7 genus 390846 1 1 390884 species 7 0 Echinicola vietnamensis 1501348 family 1 0 1 1 genus 281119 1 0 0 1 281120 species 1 Candidatus Amoebophilus asiaticus 1 1937968 family 2 0 1 1937972 genus 2 0 999 species 1 0 2 Bernardetia litoralis 0 17 family 200667 1 no rank 340671 1 0 17 0 17 1257021 species 1 Flammeovirgaceae bacterium 311 Hymenobacteraceae family 1853232 1 13 0 4 329 277 0 7 genus 89966 Hymenobacter sedentarius 0 38 species 1411621 1 213 0 5 no rank 2615202 Hymenobacter sp. DG25A 1 species 1385663 18 0 21 0 1 species 1385664 Hymenobacter sp. DG25B 31 0 1 1356852 species Hymenobacter sp. APR13 0 84 1484118 species 1 Hymenobacter sp. PAMC 26628 Hymenobacter sp. PAMC 26554 1 species 1484116 59 0 0 26 species 1446467 1 Hymenobacter swuensis 22 0 3 1379908 genus no rank 2639626 2 0 18 Rufibacter sp. DG31D 0 8 1379910 species 1 Rufibacter sp. DG15C species 1379909 1 0 10 Rufibacter tibetensis 1 512763 species 4 0 genus 323449 2 0 26 Pontibacter korlensis 0 12 species 400092 1 Pontibacter akesuensis 1 species 388950 14 0 89373 family 10 0 110 1 genus 861914 25 0 25 0 1 2620963 no rank Fibrella sp. ES10-3-2-2 25 0 1 1834519 species Spirosoma 1 6 genus 107 58 0 3 0 9 species 2057025 1 Spirosoma sp. HA7 Spirosoma aerolatum 1211326 species 1 0 10 Spirosoma radiotolerans species 1379870 1 0 8 Spirosoma rigui 564064 species 1 0 11 1178516 species 1 0 17 Spirosoma montaniterrae 0 16 genus 120831 1 94254 species 1 0 16 Dyadobacter fermentans 978 genus 1 0 2 0 2 species 985 1 Cytophaga hutchinsonii 1 genus 105 9 0 Runella slithyformis 1 species 106 9 0 1 family 1853234 1 0 0 1 genus 59740 1 0 1 no rank 2664020 1 1 species 1085624 1 0 Persicobacter sp. JZB09 0 140 117747 class 14 order 200666 14 0 140 0 140 family 84566 14 84568 no rank 1 0 6 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 0 6 1986952 species 1 37 0 5 84567 genus 0 9 no rank 2628915 1 Pedobacter sp. PACM 27299 9 0 1 species 1727164 species 984 1 0 10 Pedobacter heparinus 430522 species 1 0 8 Pedobacter steynii Pedobacter ginsengisoli 363852 species 1 0 5 0 5 188932 species 1 Pedobacter cryoconitis 3 genus 423349 80 0 15 0 1 no rank 2617802 0 15 species 1300914 1 Mucilaginibacter sp. PAMC 26640 37 0 1 species 1550579 Mucilaginibacter gotjawali 1 species 1234841 28 0 Mucilaginibacter sp. BJC16-A31 1 genus 1649482 8 0 0 8 species 151895 1 Pseudopedobacter saltans 4 genus 28453 9 0 4 2609468 no rank 9 0 Sphingobacterium sp. 21 species 743722 1 0 4 1 species 1538644 2 0 Sphingobacterium sp. ML3W 2003121 species 1 0 1 Sphingobacterium sp. G1-14 2 0 1 species 1933220 Sphingobacterium sp. B29 0 2 1134404 phylum 2 2 class 795747 2 0 2 0 1 2 1 795748 order Ignavibacteriales 1334117 family 1 0 1 1 0 1 1134403 genus Melioribacter roseus 1 species 1134405 1 0 0 192 phylum 1090 18 192 1 0 18 1 191410 class Chlorobia order 191411 1 17 1 0 191 Chlorobiales Chlorobiaceae 1 0 190 191412 family 16 1 100715 genus 1 0 5 species 100716 1 0 5 Chloroherpeton thalassium 274493 no rank 6 0 80 1099 genus 2 0 24 7 0 1 species 34090 Pelodictyon phaeoclathratiforme 17 0 1 1100 species Pelodictyon luteolum 1091 genus 4 0 56 Chlorobium phaeobacteroides 1096 species 1 0 22 2 0 1 species 337090 Chlorobium chlorochromatii 25 0 1 1092 species Chlorobium limicola 7 0 1 species 1094 Chlorobium phaeovibrioides 4 1101 genus 26 0 3 2632826 no rank 24 0 1974213 species 1 0 1 Prosthecochloris sp. HL-130-GSB 18 0 1 281093 species Prosthecochloris sp. GSB1 Prosthecochloris sp. CIB 2401 0 5 species 1868325 1 2 0 1 species 1102 Prosthecochloris aestuarii 0 3 78 256319 genus 4 1 Chlorobaculum 0 21 species 274539 1 Chlorobaculum parvum Chlorobaculum tepidum 24 0 1 species 1097 Chlorobaculum limnaeum 0 30 species 274537 1 0 307 phylum 142182 6 0 307 219685 class 6 Gemmatimonadales 1 6 order 219686 307 9 0 family 219687 1 5 1 0 298 Gemmatimonadaceae Gemmatirosa 2 1 1706036 genus 218 3 0 Gemmatirosa kalamazoonesis 1 861299 species 215 0 79 0 2 genus 173479 Gemmatimonas aurantiaca 42 0 1 173480 species Gemmatimonas phototrophica 1 1379270 species 37 0 phylum 2138240 1 0 6 0 6 2138243 class 1 1 order 2138246 6 0 0 6 2138247 family 1 68335 genus 1 0 6 1 species 35786 6 0 Coprothermobacter proteolyticus 61218 0 1067 clade 1783272 phylum 1239 345 0 2389 2 0 1 no rank 33974 2 0 1 1930845 genus Ndongobacter massiliensis species 1871025 1 0 2 0 133 909932 class 17 Selenomonadales 909929 order 11 1 0 1 74 Selenomonadaceae 8 1 1843491 family 70 0 2 1 genus 158846 2 0 Megamonas hypermegale species 158847 1 0 2 1 6 genus 970 66 0 2 Selenomonas Selenomonas ruminantium 1 species 971 5 0 3 2637378 no rank 38 0 Selenomonas sp. oral taxon 478 1 712538 species 10 0 Selenomonas sp. oral taxon 136 0 16 713030 species 1 Selenomonas sp. oral taxon 920 12 0 1 species 1884263 Selenomonas sputigena 21 0 1 species 69823 family 1843490 2 0 3 2 genus 365348 3 0 1 2629460 no rank 1 0 Pelosinus sp. UFO1 1 0 1 484770 species Pelosinus fermentans species 365349 1 0 2 2 order 1843488 21 0 family 909930 2 0 21 2 genus 904 21 0 Acidaminococcus fermentans species 905 1 0 12 Acidaminococcus intestini 9 0 1 species 187327 38 0 4 1843489 order 38 0 4 family 31977 Megasphaera 31 0 1 2 1 906 genus Megasphaera elsdenii 30 0 1 species 907 0 6 909928 genus 1 Negativicoccus massiliensis species 1702287 1 0 6 1 genus 29465 1 0 Veillonella rodentium 1 248315 species 1 0 91061 class 217 1 0 3 1371 Bacilli 186826 order 63 0 174 82 0 24 family 33958 2 genus 2767879 2 0 Lactobacillus heilongjiangensis 1 1074467 species 1 0 1 species 392416 1 0 Lactobacillus crustorum 3 genus 2767886 4 0 species 637971 1 0 1 Lactobacillus koreensis 1 267363 species 1 0 Lactobacillus zymae Lactobacillus brevis 2 0 1 species 1580 0 1 2767889 genus 1 species 375175 1 0 1 Lactobacillus backii 1 0 1 genus 2767877 Lactobacillus kunkeei 1 0 1 148814 species 3 0 1 genus 2767892 Lactobacillus paracollinoides 1 species 240427 3 0 Lactobacillus 5 1 1578 genus 17 6 0 Lactobacillus delbrueckii species 1584 1 0 7 Lactobacillus amylolyticus 0 1 species 83683 1 0 3 no rank 2620435 2 Lactobacillus sp. CBA3606 1 0 1 species 2099789 1 2108362 species 2 0 Lactobacillus sp. D1501 genus 2767842 2 0 7 1 1590 species 6 0 Lactobacillus plantarum species 60520 1 0 1 Lactobacillus paraplantarum 3 0 1 2742598 genus 0 3 1613 species 1 Lactobacillus fermentum 16 0 2 genus 2767885 1 species 1599 10 0 Lactobacillus sakei 28038 species 1 0 6 Lactobacillus curvatus genus 1253 1 0 2 1 1670797 species group 2 0 species 1254 1 0 2 Pediococcus acidilactici 11 0 2 2767893 genus species 1138822 1 0 2 Lactobacillus curieae Lactobacillus buchneri 1581 species 1 0 9 15 0 3 genus 2759736 Lactobacillus casei 8 0 1 species 1582 0 2 47715 species 1 Lactobacillus rhamnosus Lactobacillus paracasei 1 species 1597 5 0 family 1300 24 0 59 0 1 51 1301 genus 21 1 Streptococcus 1 0 1 species 400065 Streptococcus merionis Streptococcus pneumoniae 1313 species 1 0 2 0 1 1303 species 1 Streptococcus oralis 1 1305 species 2 0 Streptococcus sanguinis 1 0 1 1308 species Streptococcus thermophilus Streptococcus salivarius 0 4 1304 species 1 Streptococcus himalayensis species 1888195 1 0 2 Streptococcus gallolyticus species 315405 1 0 2 5 0 2 119603 species group 1 0 1 1336 species Streptococcus equi Streptococcus dysgalactiae 4 0 1 species 1334 1335 species 1 0 3 Streptococcus equinus Streptococcus suis 0 4 1307 species 1 Streptococcus gordonii 0 8 species 1302 1 0 1 species 1309 1 Streptococcus mutans 2 2608887 no rank 4 0 0 3 1839799 species 1 Streptococcus sp. FDAARGOS_192 0 1 1759399 species 1 Streptococcus sp. A12 Streptococcus pseudopneumoniae 1 0 1 257758 species 2 671232 species group 3 0 Streptococcus intermedius 1 1338 species 2 0 0 1 species 1328 1 Streptococcus anginosus Streptococcus mitis 6 0 1 28037 species 3 1357 genus 8 0 1 species 1358 2 0 Lactococcus lactis 4 0 1 species 1363 Lactococcus garvieae 0 2 species 1364 1 Lactococcus piscium 3 81850 family 11 0 1 0 1 46254 genus 1247 species 1 0 1 Oenococcus oeni 2 46255 genus 10 0 Weissella paramesenteroides 0 4 1249 species 1 6 0 1 species 137591 Weissella cibaria 0 6 family 186827 5 6 0 5 1375 genus 0 1 species 1376 1 Aerococcus urinae species 119206 1 0 2 Aerococcus sanguinicola Aerococcus viridans 0 1 1377 species 1 1 species 51665 1 0 Aerococcus urinaeequi 1 0 1 species 128944 Aerococcus urinaehominis 1 no rank 263855 2 0 1 1993866 species 2 0 Lactobacillales bacterium 6 family 81852 14 0 1 51668 genus 4 0 Tetragenococcus halophilus 1 51669 species 4 0 genus 1350 4 0 9 3 0 1 53346 species Enterococcus mundtii Enterococcus faecium 0 4 species 1352 1 1 0 1 53345 species Enterococcus durans 1 417368 species 1 0 Enterococcus thailandicus 1 genus 33969 1 0 0 1 species 33970 1 Melissococcus plutonius order 1385 1 153 5 0 1194 Bacillales 1 family 186824 3 0 3 0 1 1677050 genus 1 1471761 species 3 0 Novibacillus thermophilus 1 family 186821 6 0 1 no rank 663587 6 0 [Bacillus] selenitireducens 1 species 85683 6 0 67 0 14 family 186818 8 genus 1372 51 0 Planococcus donghaensis 0 1 414778 species 1 0 9 no rank 2662419 1 Planococcus sp. MB-3u-03 1 species 2058136 9 0 species 1038856 1 0 10 Planococcus plakortidis 1 species 1374 3 0 Planococcus kocurii Planococcus maritimus 0 12 192421 species 1 2 0 1 1215089 species Planococcus halocryophilus 161360 species 1 0 8 Planococcus antarcticus 6 0 1 200991 species Planococcus rifietoensis 0 1 648800 genus 1 Solibacillus silvestris 0 1 species 76853 1 4 0 1 genus 157226 0 4 species 1508404 1 Jeotgalibacillus malaysiensis 4 1569 genus 11 0 0 1 species 1476 1 Sporosarcina psychrophila 4 0 1 1571 species Sporosarcina ureae 2647733 no rank 2 0 6 0 4 species 1930764 1 Sporosarcina sp. P33 Sporosarcina sp. P37 2 0 1 1930546 species 0 3 family 186820 2 genus 1637 2 0 3 Listeria innocua 1 species 1642 2 0 1 1639 species 1 0 Listeria monocytogenes 0 9 539002 no rank 3 no rank 539742 3 0 9 9 0 3 33986 genus Exiguobacterium sibiricum 1 species 332410 2 0 0 7 2644629 no rank 2 4 0 1 species 360911 Exiguobacterium sp. AT1b 0 3 1399115 species 1 Exiguobacterium sp. MH3 Alicyclobacillaceae 186823 family 6 1 0 2 163 58 0 2 432330 genus 0 42 1903704 species 1 Tumebacillus avium Tumebacillus algifaecis 0 16 1214604 species 1 1129704 genus 2 0 28 0 10 species 2055160 1 Kyrpidia sp. EA-1 18 0 1 species 33943 Kyrpidia tusciae 29330 genus 1 0 75 Alicyclobacillus acidocaldarius 75 0 1 405212 species 0 26 90964 family 13 5 0 1 45669 genus 5 0 1 species 407035 Salinicoccus halodurans genus 1279 12 0 21 1 70255 species 1 0 Staphylococcus condimenti species 61015 1 0 1 Staphylococcus succinus Staphylococcus piscifermentans 0 4 70258 species 1 Staphylococcus epidermidis species 1282 1 0 1 1 0 1 species 246432 Staphylococcus equorum Staphylococcus muscae 1294 species 1 0 1 Staphylococcus hyicus 1 1284 species 1 0 Staphylococcus sciuri 0 1 species 1296 1 1 45972 species 1 0 Staphylococcus pasteuri 1 28035 species 5 0 Staphylococcus lugdunensis 0 1 species 29385 1 Staphylococcus saprophyticus Staphylococcus xylosus 1 species 1288 3 0 540 0 2 1 42 family 186822 Paenibacillaceae 2 85151 no rank 5 0 genus 55079 2 0 5 4 0 1 2642329 no rank 1 1450761 species 4 0 Aneurinibacillus sp. XH2 Aneurinibacillus soli 1 species 1500254 1 0 0 51 genus 76632 1 0 51 species 377615 1 Thermobacillus composti 26 0 3 55080 genus Brevibacillus formosus 1 54913 species 9 0 1465 species 1 0 2 Brevibacillus laterosporus Brevibacillus brevis 1 species 1393 15 0 Paenibacillus 35 1 44249 genus 456 5 0 Paenibacillus durus 44251 species 1 0 26 0 1 species 1763538 1 Paenibacillus crassostreae 365617 species 1 0 16 Paenibacillus sabinae Paenibacillus kribbensis 12 0 1 172713 species Paenibacillus xylanexedens 7 0 1 528191 species 12 0 1 160799 species Paenibacillus borealis 2 0 1 species 189426 Paenibacillus odorifer Paenibacillus swuensis 1 1178515 species 7 0 1462996 species 1 0 15 Paenibacillus yonginensis species 169760 1 0 26 Paenibacillus stellifer species 1406 1 0 13 Paenibacillus polymyxa species 1616788 1 0 4 Paenibacillus bovis Paenibacillus terrae 0 10 species 159743 1 1 species 59893 4 0 Paenibacillus peoriae Paenibacillus larvae 0 3 species 1464 1 0 20 2044880 species group 1 Paenibacillus riograndensis 1 species 483937 20 0 1126833 species 1 0 12 Paenibacillus beijingensis Paenibacillus donghaensis 1 414771 species 20 0 1 61624 species 60 0 Paenibacillus mucilaginosus 12 no rank 185978 135 0 19 0 1 1536774 species Paenibacillus sp. FSL H7-0357 0 13 species 1870819 1 Paenibacillus sp. BIHB4019 Paenibacillus sp. lzh-N1 7 0 1 species 2069255 Paenibacillus sp. 32O-W 1 species 1695218 18 0 Paenibacillus sp. FSL P4-0081 9 0 1 species 1536769 1 481743 species 19 0 Paenibacillus sp. Y412MC10 1 species 1536770 1 0 Paenibacillus sp. FSL R5-0345 Paenibacillus sp. FSL R5-0912 1536771 species 1 0 7 Paenibacillus sp. JDR-2 17 0 1 324057 species Paenibacillus sp. FSL H7-0737 0 1 species 1536775 1 1 1536772 species 11 0 Paenibacillus sp. FSL R7-0273 1 species 1536773 13 0 Paenibacillus sp. FSL R7-0331 Paenibacillus ihbetae 13 0 1 species 1870820 7 0 1 species 162209 Paenibacillus naphthalenovorans Paenibacillus graminis 1 species 189425 26 0 0 372 186817 family 70 10 0 1 351195 genus Salimicrobium jeotgali 10 0 1 1230341 species genus 2675229 2 0 7 1 0 1 species 1478 Bacillus simplex 6 0 1 species 264697 Bacillus muralis 0 9 genus 459532 1 Terribacillus aidingensis 1 586416 species 9 0 1 182709 genus 1 0 1 0 1 species 182710 Oceanobacillus iheyensis 20 0 3 2675234 genus Bacillus clausii 1 79880 species 16 0 0 1 species 86665 1 Bacillus halodurans Bacillus krulwichiae 0 3 199441 species 1 Bacillus 1386 genus 34 1 1 0 155 1 1413 species 2 0 Bacillus cellulosilyticus Bacillus megaterium 3 0 1 species 1404 species group 86661 4 0 13 1 2750818 no rank 1 0 2053832 species 1 0 1 Bacillus sp. HBCD-sjtu 0 2 1428 species 1 Bacillus thuringiensis Bacillus mycoides 1 0 1 1405 species 9 0 1 1396 species Bacillus cereus species group 653685 8 0 71 4 0 1 1402 species Bacillus licheniformis Bacillus sonorensis 119858 species 1 0 8 Bacillus subtilis 21 0 1 1423 species 3 species subgroup 1938374 30 0 species 492670 1 0 10 Bacillus velezensis Bacillus amyloliquefaciens species 1390 1 0 18 Bacillus siamensis 0 2 species 659243 1 Bacillus vallismortis 72361 species 1 0 1 species 1648923 1 0 7 Bacillus paralicheniformis 0 26 185979 no rank 9 Bacillus sp. 1NLA3E 1 666686 species 1 0 Bacillus sp. X1(2014) 0 1 species 1565991 1 Bacillus sp. WP8 7 0 1 species 756828 2 0 1 1774743 species Bacillus sp. SDLI1 0 4 species 1856406 1 Bacillus sp. H15-1 Bacillus sp. IHB B 7164 1 1827146 species 1 0 Bacillus sp. OxB-1 5 0 1 species 98228 0 4 2026248 species 1 Bacillus sp. 1s-1 1837130 species 1 0 1 Bacillus sp. FJAT-14266 Bacillus pumilus 6 0 1 species 1408 0 8 species 561879 1 Bacillus safensis Bacillus flexus 1 0 1 86664 species Bacillus coagulans 1 1398 species 11 0 Bacillus infantis 324767 species 1 0 3 1 1471 species 2 0 Bacillus methanolicus Bacillus aryabhattai 0 1 412384 species 1 1 species 1664069 3 0 Bacillus glycinifermentans 632773 species 1 0 1 Bacillus beveridgei 1 species 1479 3 0 Bacillus smithii 3 400634 genus 4 0 Lysinibacillus sphaericus 1 species 1421 1 0 2636778 no rank 1 0 1 Lysinibacillus sp. YS11 0 1 2072025 species 1 Lysinibacillus varians 2 0 1 species 1145276 3 0 2 genus 1329200 1 255247 species 2 0 Fictibacillus arsenicus Fictibacillus phosphorivorans 1 0 1 species 1221500 16 0 128 129337 genus 15 1 Geobacillus 0 11 species 1422 1 Geobacillus stearothermophilus 9 0 1 species 1921421 Geobacillus genomosp. 3 Geobacillus subterraneus 0 23 species 129338 1 Geobacillus thermodenitrificans 1 33940 species 9 0 1505648 species group 4 0 39 0 7 1462 species 1 Geobacillus kaustophilus species 169283 1 0 13 Geobacillus lituanicus species 33941 1 0 10 Geobacillus thermoleovorans species 33938 1 0 9 Geobacillus thermocatenulatus 2642459 no rank 6 0 21 0 8 581103 species 1 Geobacillus sp. Y4.1MC1 Geobacillus sp. WCH70 0 1 species 471223 1 Geobacillus sp. GHH01 1 0 1 species 1233873 0 3 species 550542 1 Geobacillus sp. Y412MC52 1 species 544556 2 0 Geobacillus sp. Y412MC61 0 6 691437 species 1 Geobacillus sp. C56-T3 175304 genus 1 0 1 0 1 species 1472767 1 Lentibacillus amyloliquefaciens genus 1906945 1 0 8 Parageobacillus thermoglucosidasius 1 species 1426 8 0 genus 150247 2 0 6 1 294699 species 5 0 Anoxybacillus amylolyticus Anoxybacillus flavithermus species 33934 1 0 1 2 genus 2675230 13 0 Bacillus oceanisediminis 8 0 1 species 665099 1 species 859143 5 0 Bacillus kochii 2 0 1 1055323 genus Aeribacillus pallidus 0 2 species 33936 1 genus 45667 1 0 5 Halobacillus halophilus 1 1570 species 5 0 4 class 1737404 12 0 1737405 order 4 0 12 0 12 1570339 family 4 0 3 genus 162289 1 3 0 1 2637196 no rank 0 3 species 1912856 1 Peptoniphilus sp. ING2-D1G 0 4 1161127 genus 1 Murdochiella vaginalis 4 0 1 species 1852373 1 genus 165779 4 0 1870984 species 1 0 4 Anaerococcus mediterraneensis 1 0 1 150022 genus 1 0 1 species 1260 Finegoldia magna 526524 class 3 0 12 3 order 526525 12 0 128827 family 3 0 12 1 genus 1729679 8 0 Faecalibaculum rodentium 1 1702221 species 8 0 1 genus 1647 1 0 Erysipelothrix larvae 1 0 1 species 1514105 191303 genus 1 0 3 3 0 1 2638206 no rank species 1712675 1 0 3 Turicibacter sp. H121 2 class 1676648 55 0 Limnochordales 2 0 55 1676649 order 2 1 53 0 1 1676650 family 1676651 genus 1 0 53 species 1555112 1 0 53 Limnochorda pilosa 186801 class 101 1 0 1 804 Clostridia 6 0 2 order 2770089 1 2770093 family 4 0 genus 291988 1 0 4 species 291990 1 0 4 Thermosediminibacter oceani family 2770092 1 0 2 1 genus 499228 2 0 0 2 499229 species 1 Tepidanaerobacter acetatoxydans Clostridiales 83 1 186802 order 730 0 14 0 11 68298 family 3 1 2 genus 129001 10 0 1 Syntrophothermus Syntrophothermus lipocalidus 9 0 1 species 86170 Syntrophomonas 0 1 genus 862 1 59 0 12 186803 family 1 0 1 207244 genus species 649756 1 0 1 Anaerostipes hadrus 0 15 genus 2719313 1 15 0 1 208479 species [Clostridium] bolteae 1 2039240 genus 3 0 1 28446 species 3 0 Anaerotignum propionicum 3 genus 1506553 13 0 Lachnoclostridium phytofermentans species 66219 1 0 1 0 7 2608895 no rank 1 Lachnoclostridium sp. YL32 1 1834196 species 7 0 Lachnoclostridium phocaeense 1871021 species 1 0 5 2 572511 genus 3 0 2648079 no rank 1 0 1 species 1796616 1 0 1 Blautia sp. YL58 Blautia hansenii 0 2 species 1322 1 genus 841 1 0 8 8 0 1 species 301301 Roseburia hominis 3 0 1 genus 2719231 1 84030 species 3 0 [Clostridium] saccharolyticum 13 0 2 no rank 186928 712991 species 1 0 8 Lachnospiraceae bacterium oral taxon 500 [Eubacterium] rectale 0 5 39491 species 1 0 111 186807 family 20 51196 genus 1 0 5 Syntrophobotulus glycolicus 0 5 species 51197 1 19 0 1 2282740 genus 102134 species 1 0 19 Desulfotomaculum gibsoniae genus 51514 1 0 8 1 species 51515 8 0 Dehalobacterium formicoaceticum 0 6 278993 genus 1 6 0 1 863643 species Thermincola potens 0 6 genus 79206 3 1 79209 species 1 0 Desulfosporosinus meridiei Desulfosporosinus acidiphilus 1 885581 species 4 0 Desulfosporosinus orientis 1 species 1563 1 0 0 6 genus 2282742 1 Desulfotomaculum acetoxidans 1 58138 species 6 0 28 0 1 471826 genus Candidatus Desulforudis audaxviator 28 0 1 471827 species Dehalobacter 0 1 16 genus 56112 1 4 1 0 1 55583 species Dehalobacter restrictus 2 no rank 2635733 14 0 Dehalobacter sp. DCA 1 species 1147129 7 0 1131462 species 1 0 7 Dehalobacter sp. CF 3 genus 36853 9 0 Desulfitobacterium dehalogenans 2 0 1 36854 species Desulfitobacterium hafniense 1 49338 species 5 0 Desulfitobacterium dichloroeliminans 0 2 species 233055 1 0 8 1562 genus 4 Desulfotomaculum nigrificans 0 2 1565 species 1 1 0 1 species 1833852 Desulfotomaculum ferrireducens Desulfotomaculum reducens 0 2 59610 species 1 Desulfotomaculum ruminis 1564 species 1 0 3 1 31984 family 20 0 1 genus 2697 20 0 Heliobacterium modesticaldum 1 35701 species 20 0 2 0 1 990719 family 1 genus 990721 2 0 Christensenella massiliensis 1805714 species 1 0 2 0 4 family 216572 1 459786 genus 1 0 4 1 species 351091 4 0 Oscillibacter valericigenes 5 538999 no rank 88 0 1 0 1 genus 2717089 Mordavella sp. Marseille-P3756 species 2086584 1 0 1 Clostridiales Family XVII. Incertae Sedis family 539000 1 2 1 0 58 1 73918 genus 57 0 0 57 species 73919 1 Thermaerobacter marianensis 29 0 1 2 1 1392389 genus Intestinimonas 1 species 1297617 28 0 Intestinimonas butyriciproducens 186804 family 3 0 10 genus 1870884 1 0 3 Clostridioides difficile 3 0 1 species 1496 0 3 genus 44259 1 Filifactor alocis 3 0 1 species 143361 1 1481960 genus 4 0 Peptoclostridium acidaminophilum 1 1731 species 4 0 Ruminococcaceae 541000 family 7 1 1 0 64 0 1 no rank 2305133 1 Ruminococcaceae bacterium CPB6 0 1 species 1572656 1 1 genus 216851 12 0 12 0 1 species 853 Faecalibacterium prausnitzii no rank 552397 1 0 3 species 29343 1 0 3 [Clostridium] cellulosi 0 11 genus 253238 1 253239 species 1 0 11 Ethanoligenens harbinense genus 1263 1 0 5 1264 species 1 0 5 Ruminococcus albus 31 0 1 946234 genus species 292800 1 0 31 Flavonifractor plautii 2 family 186806 24 0 1 33951 genus 10 0 Acetobacterium woodii 0 10 species 33952 1 0 14 genus 1730 1 1 species 1736 14 0 Eubacterium limosum 0 30 family 2304686 7 21 0 1 no rank 2305130 Ruminiclostridium sp. KB18 21 0 1 1834198 species 1 236752 genus 3 0 3 0 1 species 236753 Fastidiosipila sanguinis 1 genus 2304691 2 0 1 species 1510 2 0 [Clostridium] stercorarium genus 2304692 2 0 2 Herbivorax saccincola 1 0 1 1677857 species 1 species 1515 1 0 Ruminiclostridium thermocellum genus 1508657 1 2 1 0 2 Ruminiclostridium [Clostridium] cellulolyticum 0 1 1521 species 1 230 0 18 family 31979 2 genus 49082 2 0 2 0 2 no rank 2638829 1 0 1 species 1508644 Candidatus Arthromitus sp. SFB-mouse-NL 1 0 1 species 49118 Candidatus Arthromitus sp. SFB-mouse 222 0 13 genus 1485 0 4 species 394958 1 Clostridium taeniosporum Clostridium autoethanogenum 1 84023 species 1 0 Clostridium pasteurianum 1 species 1501 1 0 1 species 1502 3 0 Clostridium perfringens Clostridium ljungdahlii 1538 species 1 0 1 1 species 169679 1 0 Clostridium saccharobutylicum 2 no rank 2614128 25 0 13 0 1 1042156 species Clostridium sp. SY8519 1 species 755731 12 0 Clostridium sp. BNL1100 Clostridium botulinum 0 180 1491 species 1 Clostridium tetani species 1513 1 0 2 0 2 species 1493 1 Clostridium cellulovorans 0 1 1561 species 1 Clostridium baratii 1 0 1 46867 species Clostridium chauvoei 0 4 114627 genus 2 461876 species 1 0 3 Alkaliphilus oremlandii 0 1 species 208226 1 Alkaliphilus metalliredigens 0 2 genus 390805 1 Geosporobacter ferrireducens 2 0 1 species 1424294 0 63 family 543349 2 Symbiobacterium 2 1 2733 genus 63 2 0 2734 species 1 0 61 Symbiobacterium thermophilum 0 3 485256 order 1 0 3 family 485255 1 1 genus 375928 3 0 Natranaerobius thermophilus 0 3 375929 species 1 0 4 53433 order 1 4 0 1 53434 family 28186 genus 1 0 4 Acetohalobium arabaticum 4 0 1 28187 species 0 60 order 68295 13 543371 family 7 0 15 0 6 genus 28895 2 species 1517 1 0 5 Thermoanaerobacterium thermosaccharolyticum Thermoanaerobacterium xylanolyticum 0 1 29329 species 1 9 0 5 genus 44000 1 species 31899 1 0 Caldicellulosiruptor bescii Caldicellulosiruptor owensensis 0 1 species 55205 1 Caldicellulosiruptor saccharolyticus 2 0 1 44001 species Caldicellulosiruptor lactoaceticus 0 1 species 52766 1 Caldicellulosiruptor kristjanssonii 1 species 52765 4 0 186814 family 5 0 43 2 no rank 42857 35 0 0 15 44260 genus 1 Moorella thermoacetica 0 15 species 1525 1 genus 42837 1 0 20 Ammonifex degensii species 42838 1 0 20 1 genus 1754 1 0 Thermoanaerobacter kivui 0 1 species 2325 1 genus 249529 1 0 2 Caldanaerobacter subterraneus 911092 species 1 0 2 140458 genus 1 0 5 Thermacetogenium phaeum 5 0 1 85874 species 0 2 227387 family 1 0 2 genus 227388 1 Thermodesulfobium narugense species 184064 1 0 2 349 0 22 200795 phylum 45 0 3 292625 class 292629 order 3 0 45 0 45 292628 family 3 1 233189 genus 17 0 Anaerolinea thermophila species 167964 1 0 17 0 16 1324991 no rank 1 0 16 1889813 species 1 Anaerolineaceae bacterium oral taxon 439 genus 2019482 1 0 12 Brevefilum fermentans 12 0 1 1986204 species 0 37 class 475962 2 0 37 order 475963 2 1 0 37 family 475964 1 2 Caldilineaceae 0 36 233191 genus 1 Caldilinea aerophila 1 species 133453 36 0 Chloroflexia 0 1 98 32061 class 6 1 order 32064 5 0 97 0 37 suborder 1508594 3 0 37 family 1106 3 genus 1107 3 0 37 Chloroflexus aurantiacus 30 0 15 1 2 species 1108 0 15 480224 strain 1 Chloroflexus sp. Y-400-fl Chloroflexus aggregans 1 species 152260 7 0 60 0 2 suborder 1508595 60 0 2 family 1508635 2 genus 120961 60 0 Roseiflexus castenholzii 27 0 1 120962 species 0 33 no rank 2609473 1 Roseiflexus sp. RS-1 species 357808 1 0 33 91 2 0 4 1 189775 class Thermomicrobia 85000 subclass 2 0 75 Sphaerobacterales 1 2 order 85001 75 0 1 0 74 255728 suborder 1 family 85002 1 0 74 0 74 2056 genus 1 1 species 2057 74 0 Sphaerobacter thermophilus 189776 order 1 0 14 1 189777 family 14 0 1 499 genus 14 0 Thermomicrobium roseum 14 0 1 500 species 63 1 0 1 3 class 1382928 Ardenticatenia 1382929 order 2 0 62 0 62 family 1382930 2 Candidatus Promineofilum genus 1988031 1 2 0 1 62 Candidatus Promineofilum breve 61 0 1 species 1806508 0 15 301297 class 4 12 0 2 genus 670486 Dehalogenimonas formicexedens 1 species 1839801 8 0 Dehalogenimonas lykanthroporepellens 1 species 552810 4 0 0 3 order 1202465 2 0 3 1202464 family 2 0 3 genus 61434 2 0 1 237581 no rank 1 1 species 1522671 1 0 Dehalococcoides sp. UCH007 0 2 61435 species 1 Dehalococcoides mccartyi 25 0 13 phylum 544448 713063 no rank 1 0 1 1 1911684 species 1 0 Tenericutes bacterium MO-XQ 12 class 31969 24 0 0 2 order 186329 2 2 0 2 family 2146 2 0 2 2147 genus Acholeplasma palmae 1 0 1 species 38986 Acholeplasma brassicae 0 1 61635 species 1 order 186328 3 0 7 0 6 family 2131 2 2 2132 genus 6 0 2 no rank 2637901 6 0 Spiroplasma sp. TU-14 3 0 1 species 1898044 1 1914410 species 3 0 Spiroplasma sp. NBRC 100390 0 1 33925 family 1 0 1 genus 46239 1 1 0 1 225999 species Mesoplasma syrphidae 0 15 2085 order 7 15 0 7 2092 family 3 2767358 genus 6 0 Mycoplasma agalactiae 1 species 2110 2 0 Mycoplasma bovis 3 0 1 species 28903 Mycoplasma synoviae 2109 species 1 0 1 4 0 9 2093 genus 4 1 Mycoplasma 1 0 1 species 86660 Mycoplasma dispar 136241 species 1 0 1 Mycoplasma haemocanis Mycoplasma gallisepticum species 2096 1 0 3 Actinobacteria 201174 phylum 563 1 3 0 56780 1760 class 527 1 129 0 55670 Actinobacteria 517 0 2 414714 order 2 1 414877 family 517 0 2 Catenulisporaceae 414878 genus 1 0 515 Catenulispora acidiphila 1 304895 species 515 0 2 85014 order 187 0 187 0 2 family 85034 Stackebrandtia 0 2 187 genus 283810 1 2 0 185 species 283811 1 Stackebrandtia nassauensis 27 0 9 2039638 order 9 family 2162846 27 0 0 7 genus 2039639 3 1 1884915 species 3 0 Candidatus Nanopelagicus hibericus Candidatus Nanopelagicus abundans 1884916 species 1 0 3 species 1884634 1 0 1 Candidatus Nanopelagicus limnes 0 20 622681 genus 6 Candidatus Planktophila versatilis 4 0 1 species 1884905 Candidatus Planktophila vernalis species 1884907 1 0 1 1 species 1884904 1 0 Candidatus Planktophila sulfonica Candidatus Planktophila dulcis 1 species 1884914 4 0 Candidatus Planktophila lacus 0 7 species 1884913 1 1 species 573600 3 0 Candidatus Planktophila limnetica order 622452 2 0 193 Kineosporiaceae 193 0 5 1 2 family 83778 188 0 1 33981 genus 0 188 species 131568 1 Kineococcus radiotolerans 1 27 order 85009 2091 11 0 Propionibacteriales Nocardioidaceae 1304 7 0 1 10 family 85015 0 129 genus 2040 1 129 0 1 species 2041 Aeromicrobium erythreum 2 1 182639 genus 307 0 5 Kribbella Kribbella flavida species 182640 1 0 302 1 116071 genus 72 0 0 72 species 75385 1 Micropruina glycogenica 0 7 566 1839 genus 4 1 Nocardioides 0 148 species 2045452 1 Nocardioides sp. 78 Nocardioides dokdonensis species 450734 1 0 180 no rank 2615069 1 0 231 1 species 196162 231 0 Nocardioides sp. JS614 genus 2044 1 0 223 Pimelobacter simplex 223 0 1 species 2045 Propionibacteriaceae 776 0 11 1 16 family 31957 0 105 29404 genus 1 105 0 1 29405 species Microlunatus phosphovorus 2 0 108 genus 1743 1 3 Propionibacterium 0 18 no rank 2608905 1 18 0 1 671223 species Propionibacterium sp. oral taxon 193 species 1744 1 0 88 Propionibacterium freudenreichii 4 0 1 genus 203133 0 4 no rank 2633994 1 4 0 1 1871034 species Propionimicrobium sp. Marseille-P3275 Cutibacterium genus 1912216 1 4 0 2 101 1 species 1747 31 0 Cutibacterium acnes 0 48 33010 species 1 Cutibacterium avidum 20 0 1 33011 species Cutibacterium granulosum 115 0 1 1912215 genus Acidipropionibacterium acidipropionici 1 1748 species 115 0 genus 2801844 1 0 62 1 species 1750 62 0 Pseudopropionibacterium propionicum genus 72763 4 0 270 73 0 1 species 1332264 Tessaracoccus aquimaris 63 0 1 2635419 no rank Tessaracoccus sp. T2.5-30 0 63 species 1909732 1 Tessaracoccus flavescens 0 58 399497 species 1 1 1610493 species 76 0 Tessaracoccus flavus 352 0 2 no rank 1643818 147067 genus 2 1 0 2 352 Thermobispora 350 0 1 2006 species Thermobispora bispora 1 no rank 52018 12 0 Actinobacteria bacterium IMCC26256 12 0 1 1650658 species Streptomycetales order 85011 1 82 16 0 17720 0 43 17704 family 2062 1 81 Streptomycetaceae 1 75 genus 1883 16399 0 452 Streptomyces Streptomyces avermitilis 0 225 33903 species 1 Streptomyces pactum 1 species 68249 328 0 217 0 1 species 1642299 Streptomyces alfalfae Streptomyces chartreusis species 1969 1 0 181 Streptomyces albus 1 1888 species 435 0 177 0 1 67267 species Streptomyces alboflavus species 1916 1 0 200 Streptomyces lividans Streptomyces sp. XZHG99 0 204 species 2049881 1 146923 species 1 0 183 Streptomyces parvulus 0 103 species 1355015 1 Streptomyces pluripotens 184 0 1 species 408015 Streptomyces xiamenensis Streptomyces venezuelae 0 413 54571 species 1 Streptomyces collinus 0 218 species 42684 1 Streptomyces formicae 1 species 1616117 236 0 366 0 2 species group 629295 161 0 1 species subgroup 1482558 0 161 1908 species 1 Streptomyces globisporus 205 0 1 species subgroup 1482596 Streptomyces griseus species 1911 1 0 205 Streptomyces autolyticus 221 0 1 75293 species 1 1169025 species 131 0 Streptomyces pratensis Streptomyces rubrolavendulae 1 285473 species 132 0 species 1926 1 0 214 Streptomyces reticuli 0 170 species 1901 1 Streptomyces clavuligerus 1 1935 species 180 0 Streptomyces violaceoruber Streptomyces hygroscopicus 617 0 1 1912 species Streptomyces griseochromogenes 258 0 1 68214 species Streptomyces ambofaciens 0 165 species 1889 1 Streptomyces vietnamensis 231 0 1 362257 species 1971 species 1 0 213 Streptomyces noursei 0 240 species 1914 1 Streptomyces lavendulae 0 524 species 47763 1 Streptomyces lydicus Streptomyces peucetius 1 1950 species 148 0 species 1930 1 0 271 Streptomyces scabiei 0 167 species 553510 1 Streptomyces gilvosporeus 1 species 68192 190 0 Streptomyces cyaneogriseus species group 1477431 2 0 388 0 188 1902 species 1 Streptomyces coelicolor Streptomyces sampsonii 200 0 1 species 42239 Streptomyces leeuwenhoekii 173 0 1 1437453 species 0 147 species 193462 1 Streptomyces niveus Streptomyces cattleya 255 0 1 29303 species species 68570 1 0 258 Streptomyces albulus Streptomyces xinghaiensis species 1038928 1 0 183 0 4668 2593676 no rank 24 Streptomyces sp. P3 1 2135430 species 266 0 Streptomyces sp. 769 0 208 species 1262452 1 Streptomyces sp. Sge12 154 0 1 species 1972846 Streptomyces sp. FR-008 species 206662 1 0 193 Streptomyces sp. Mg1 206 0 1 species 465541 Streptomyces sp. CCM_MD2014 0 183 1561022 species 1 0 174 species 2094021 1 Streptomyces sp. WAC00288 Streptomyces sp. SAT1 1 species 1849967 197 0 Streptomyces sp. CdTB01 306 0 1 species 1725411 160 0 1 1649184 species Streptomyces sp. CFMR 7 Streptomyces sp. CNQ-509 1 species 444103 248 0 0 240 1984801 species 1 Streptomyces sp. CLI2509 Streptomyces sp. 3211 1964449 species 1 0 180 Streptomyces sp. Tue 6075 1 1661694 species 133 0 Streptomyces sp. CMB-StM0423 236 0 1 species 2059884 0 113 1837283 species 1 Streptomyces sp. S8 species 1751294 1 0 187 Streptomyces sp. 4F 1265601 species 1 0 159 Streptomyces sp. PAMC 26508 Streptomyces sp. MOE7 1 species 1961713 188 0 1 862751 species 142 0 Streptomyces sp. SirexAA-E Streptomyces sp. RTd22 220 0 1 species 1841249 species 1812480 1 0 151 Streptomyces sp. fd1-xmd 1 species 234612 156 0 Streptomyces sp. TN58 Streptomyces sp. M56 0 268 1495638 species 1 Streptomyces lincolnensis 1 1915 species 250 0 0 181 38300 species 1 Streptomyces pristinaespiralis Streptomyces sp. S10(2016) 1 1783515 species 158 0 Streptomyces glaucescens 1 species 1907 153 0 0 243 164348 species 1 Streptomyces puniciscabiei Streptomyces violaceusniger species 68280 1 0 242 1 1940 species 199 0 Streptomyces albireticuli 68202 species 1 0 186 Streptomyces fulvissimus 1 92644 species 222 0 Streptomyces malaysiensis Streptomyces bingchenggensis 1 379067 species 299 0 Kitasatospora 1262 0 23 1 5 genus 2063 Kitasatospora setae 1 species 2066 395 0 1894 species 1 0 291 Kitasatospora aureofaciens 2633591 no rank 1 0 345 Kitasatospora sp. MMS16-BH015 1 2018025 species 345 0 Kitasatospora albolonga 208 0 1 species 68173 Micromonosporales order 85008 1 19 0 5 3366 1 18 family 28056 3361 21 0 Micromonosporaceae Actinoplanes 1406 0 19 1 6 genus 1865 831 0 3 no rank 2626549 0 253 species 2033844 1 Actinoplanes sp. SE50 134676 species 1 0 253 Actinoplanes sp. SE50/110 Actinoplanes sp. N902-109 0 325 649831 species 1 Actinoplanes friuliensis 196914 species 1 0 288 0 268 species 1866 1 Actinoplanes missouriensis 829 0 14 1 4 genus 673534 Plantactinospora 3 2631981 no rank 815 0 Plantactinospora sp. BC1 2108470 species 1 0 256 265 0 1 2024580 species Plantactinospora sp. KBS50 0 294 species 2071627 1 Plantactinospora sp. BB1 Salinispora genus 168694 1 3 0 5 235 1 168697 species 98 0 Salinispora arenicola Salinispora tropica 0 132 168695 species 1 Micromonospora 4 1 1873 genus 870 0 7 0 202 1003110 species 1 Verrucosispora maris species 47850 1 0 350 Micromonospora aurantiaca 311 0 1 no rank 2617518 Micromonospora sp. L5 0 311 648999 species 1 2513 0 3 1 13 order 85012 Streptosporangiales Streptosporangiaceae family 2004 1 4 3 0 1245 0 515 2000 genus 1 Streptosporangium roseum 0 515 2001 species 1 0 2 727 83681 genus 2 1 Nonomuraea no rank 2593643 1 0 725 0 725 1909395 species 1 Nonomuraea sp. ATCC 55076 Nocardiopsaceae 1 6 family 83676 824 6 0 1 83677 genus 107 0 Thermobifida fusca 1 species 2021 107 0 genus 2013 1 4 3 0 711 Nocardiopsis Nocardiopsis dassonvillei species 2014 1 0 305 Nocardiopsis alba 180 0 1 53437 species Nocardiopsis gilva 0 223 280236 species 1 Thermomonosporaceae 441 7 0 1 2 family 2012 2019 genus 1 0 434 2020 species 1 0 434 Thermomonospora curvata 1 37 order 85010 6991 0 7 Pseudonocardiales Pseudonocardiaceae 1 36 family 2070 6984 0 58 674734 genus 1 0 210 210 0 1 2636053 no rank Alloactinosynnema sp. L-07 species 1653480 1 0 210 81 0 1 genus 1851 81 0 1 1852 species Saccharomonospora viridis 1 genus 2071 348 0 species 103731 1 0 348 Saccharothrix espanaensis 1 genus 43356 339 0 Kutzneria albida 339 0 1 species 43357 1944 0 34 7 1 1813 genus Amycolatopsis 2618356 no rank 2 0 477 Amycolatopsis sp. AA4 247 0 1 1896961 species species 1911175 1 0 230 Amycolatopsis sp. BJA-103 Amycolatopsis orientalis 455 0 1 31958 species 313 0 1 species 1814 Amycolatopsis methanolica Amycolatopsis mediterranei 0 433 species 33910 1 0 232 208439 species 1 Amycolatopsis japonica Kibdelosporangium 238 0 1 2 1 2029 genus 1 species 860235 237 0 Kibdelosporangium phytohabitans genus 142577 1 0 149 149 0 1 530584 species Prauserella marina 65496 genus 6 1 0 21 650 Actinoalloteichus Actinoalloteichus hymeniacidonis 0 75 species 340345 1 Actinoalloteichus hoggarensis 142 0 1 species 1470176 Actinoalloteichus sp. ADI127-7 145 0 1 1612552 species 2 no rank 2644606 267 0 Actinoalloteichus sp. AHMU CJ021 species 2072503 1 0 124 Actinoalloteichus sp. GBA129-24 0 143 1612551 species 1 Actinosynnema 615 15 0 1 3 genus 40566 Actinosynnema pretiosum species 42197 1 0 309 1 40567 species 291 0 Actinosynnema mirum Lentzea 165301 genus 2 1 0 1 251 Lentzea guizhouensis 250 0 1 species 1586287 0 46 1775 1847 genus 8 1 Pseudonocardia Pseudonocardia dioxanivorans 1 240495 species 281 0 1448 0 6 2619320 no rank Pseudonocardia sp. HH130629-09 231 0 1 1641402 species Pseudonocardia sp. EC080625-04 213 0 1 1096868 species Pseudonocardia sp. EC080619-01 1096856 species 1 0 223 445576 species 1 0 289 Pseudonocardia sp. AL041005-10 0 269 species 1690815 1 Pseudonocardia sp. HH130630-07 Pseudonocardia sp. EC080610-09 1 1688404 species 223 0 326 0 1 1 2 genus 1835 Saccharopolyspora Saccharopolyspora erythraea species 1836 1 0 325 Frankiales 1345 0 2 7 1 85013 order 74712 family 6 1 15 0 1343 Frankiaceae Frankia 0 11 1328 1854 genus 5 1 Frankia alni 1859 species 1 0 377 Frankia inefficax 1 species 298654 447 0 Frankia casuarinae 0 166 species 106370 1 no rank 2632575 1 0 327 Frankia sp. EAN1pec 327 0 1 species 298653 499 0 23 85004 order Bifidobacteriaceae 2 0 499 31953 family 23 1 4 0 1 genus 2701 1 species 2702 4 0 Gardnerella vaginalis 6 0 1 genus 196082 Parascardovia denticolens 0 6 78258 species 1 1 196081 genus 3 0 0 3 78259 species 1 Scardovia inopinata Bifidobacterium 19 1 1678 genus 484 8 0 0 17 1691 species 1 Bifidobacterium indicum 1685 species 1 0 25 Bifidobacterium breve Bifidobacterium catenulatum 10 0 31 1686 species 2 1 Bifidobacterium kashiwanohense 21 0 1 630129 subspecies 78 0 1 216816 species Bifidobacterium longum Bifidobacterium animalis 1 28025 species 21 0 Bifidobacterium dentium 19 0 1 species 1689 35760 species 1 0 64 Bifidobacterium choerinum 13 0 1 species 1684 Bifidobacterium asteroides Bifidobacterium pseudocatenulatum 0 7 species 28026 1 Bifidobacterium coryneforme 1687 species 1 0 17 Bifidobacterium pseudolongum 1 1694 species 48 0 Bifidobacterium actinocoloniiforme 0 16 species 638619 1 Bifidobacterium scardovii 49 0 1 158787 species 1683 species 1 0 8 Bifidobacterium angulatum Bifidobacterium bifidum species 1681 1 0 23 Bifidobacterium thermophilum 15 0 1 33905 species Bifidobacterium adolescentis species 1680 1 0 25 order 1643683 1 0 40 1 85032 family 40 0 1 genus 28048 40 0 Acidothermus cellulolyticus 0 40 species 28049 1 6842 0 40 114 1 85006 order Micrococcales 1 35 family 1268 1455 0 4 Micrococcaceae 4 0 26 32207 genus 3 1 Rothia Rothia mucilaginosa 21 0 1 43675 species species 2047 1 0 1 Rothia dentocariosa 17 0 1 2078575 genus 17 0 1 species 1618207 Arthrobacter sp. IHBB 11108 1 genus 1645 9 0 Renibacterium salmoninarum species 1646 1 0 9 1 4 genus 57493 197 2 0 Kocuria Kocuria rhizophila 56 0 1 72000 species 96 0 1 species 446860 Kocuria flava Kocuria palustris 43 0 1 species 71999 genus 1269 1 0 63 Micrococcus luteus 0 63 1270 species 1 55 0 1 1742989 genus 55 0 1 species 256701 Glutamicibacter arilaitensis Sinomonas genus 596707 1 2 0 6 104 98 0 1 species 37927 Sinomonas atrocyanea 1663 genus 15 1 9 0 767 Arthrobacter Arthrobacter alpinus species 656366 1 0 49 50 0 1 37928 species Arthrobacter crystallopoietes no rank 235627 12 0 659 39 0 1 1118963 species Arthrobacter sp. Rue61a 0 56 species 1690248 1 Arthrobacter sp. LS16 Arthrobacter sp. U41 1849032 species 1 0 108 45 0 1 species 1494608 Arthrobacter sp. PAMC 25486 Arthrobacter sp. PGP41 1 2079227 species 45 0 Arthrobacter sp. FB24 0 55 290399 species 1 Arthrobacter sp. YN 27 0 1 2020486 species Arthrobacter sp. QXT-31 species 1357915 1 0 85 0 30 species 1771959 1 Arthrobacter sp. ATCC 21022 Arthrobacter sp. ERGS1:01 1704044 species 1 0 59 Arthrobacter sp. ZXY-2 53 0 1 species 1806905 57 0 1 species 1652545 Arthrobacter sp. YC-RL1 genus 1742993 1 4 0 1 155 Pseudarthrobacter Pseudarthrobacter sulfonivorans 0 53 121292 species 1 species 85085 1 0 68 Pseudarthrobacter chlorophenolicus 361575 species 1 0 33 Pseudarthrobacter phenanthrenivorans 15 0 1 genus 1868332 Neomicrococcus aestuarii 15 0 1 species 556325 1 1742992 genus 43 0 Paenarthrobacter aurescens 0 43 species 43663 1 Promicromonosporaceae 0 8 614 family 85017 1 6 2 254250 genus 280 0 1 species 139208 162 0 Isoptericola variabilis Isoptericola dokdonensis 372663 species 1 0 118 0 95 186188 genus 1 Xylanimonas cellulosilytica 0 95 species 186189 1 2 157920 genus 231 0 113 0 1 no rank 2624466 1 1980001 species 113 0 Cellulosimicrobium sp. TH-20 0 118 1710 species 1 Cellulosimicrobium cellulans family 85022 1 0 4 4 0 1 43673 genus Jonesia denitrificans 4 0 1 species 43674 145360 family 1 0 89 1 60919 genus 89 0 Sanguibacter keddieii 60920 species 1 0 89 0 485 85020 family 8 1 6 genus 43668 472 0 7 Brachybacterium 1 1331682 species 103 0 Brachybacterium ginsengisoli 2623841 no rank 1 0 80 Brachybacterium sp. P6-10-X1 species 1903186 1 0 80 2017485 species 1 0 74 Brachybacterium sp. VR2415 species 2017484 1 0 101 Brachybacterium sp. VM2412 0 107 species 43669 1 Brachybacterium faecium 36739 genus 1 0 7 0 7 1630135 species 1 Dermabacter vaginalis genus 472568 1 0 6 0 6 species 472569 1 Devriesea agamarum 5 family 85016 513 0 Cellulomonas 5 0 513 genus 1707 1 5 1 2620175 no rank 122 0 Cellulomonas sp. PSBB021 0 122 species 2003551 1 1 species 1708 155 0 Cellulomonas fimi Cellulomonas flavigena 133 0 1 1711 species 11 species 1 0 98 Cellulomonas gilvus 0 132 125316 family 2 genus 84756 1 2 0 1 132 Beutenbergia 1 species 84757 131 0 Beutenbergia cavernae Microbacteriaceae 85023 family 41 1 15 0 2667 1 3 genus 69578 159 0 1 Cryobacterium Cryobacterium arcticum 670052 species 1 0 103 55 0 1 2649013 no rank 0 55 1978566 species 1 Cryobacterium sp. LW097 genus 518733 1 0 77 0 77 412690 species 1 Microterricola viridarii Curtobacterium 254 5 0 1 4 genus 2034 species 69373 1 0 81 Curtobacterium pusillum 257496 no rank 2 0 168 Curtobacterium sp. BH-2-1-1 0 84 1905847 species 1 Curtobacterium sp. MR_MD2014 1561023 species 1 0 84 86 0 4 3 1 33886 genus Rathayibacter Rathayibacter toxicus 0 14 145458 species 1 33888 species 1 0 68 Rathayibacter tritici 172 0 1 110932 genus Leifsonia xyli 1 species 1575 172 0 1 33877 genus 103 0 1 species 453304 103 0 Agromyces aureus genus 337004 1 0 63 Microcella alkaliphila species 279828 1 0 63 2 1655488 no rank 5 0 0 5 clade 1655489 2 genus 529883 2 0 5 Candidatus Rhodoluna planktonica species 535712 1 0 2 0 3 species 529884 1 Rhodoluna lacicola 1 1705353 genus 2 0 708131 species 1 0 2 Aurantimicrobium minutum 1034 0 16 1 14 genus 33882 Microbacterium species 162426 1 0 113 Microbacterium hominis species 36805 1 0 76 Microbacterium aurum Microbacterium testaceum species 2033 1 0 92 Microbacterium chocolatum 66 0 1 species 84292 0 72 300019 species 1 Microbacterium paludicola 0 599 2609290 no rank 8 Microbacterium sp. BH-3-3-3 1906742 species 1 0 89 55 0 1 1916917 species Microbacterium sp. 1.5R 1696072 species 1 0 55 Microbacterium sp. CGR1 Microbacterium sp. PAMC 28756 species 1795053 1 0 80 species 1714373 1 0 112 Microbacterium sp. No. 7 367477 species 1 0 79 Microbacterium sp. XT11 Microbacterium sp. str. 'China' 84 0 1 species 2103230 45 0 1 1938334 species Microbacterium sp. TPU 3598 91 0 1 genus 1759331 Cnuibacter physcomitrellae 1 1619308 species 91 0 1 0 1 genus 1434032 Pontimonas salivibrio 1 species 1159327 1 0 0 17 436 genus 1573 1 6 Clavibacter 5 1 28447 species 419 0 77 Clavibacter michiganensis Clavibacter capsici 100 0 1 1874630 subspecies Clavibacter sepedonicus 0 90 31964 subspecies 1 Clavibacter nebraskensis 79 0 1 subspecies 31963 73 0 1 subspecies 33014 Clavibacter insidiosus 169 0 1 genus 447237 169 0 1 no rank 2626248 Frondihabitans sp. PAMC 28766 169 0 1 1795630 species family 85018 1 0 13 0 13 1862 genus 1 Dermatophilus congolensis 0 13 1863 species 1 455 3 0 8 1 85021 family Intrasporangiaceae 1 2 genus 267408 105 0 2 Arsenicicoccus no rank 2663846 1 0 103 species 1658671 1 0 103 Arsenicicoccus sp. oral taxon 190 88 0 1 53357 genus Intrasporangium calvum 1 53358 species 88 0 Serinicoccus 1 2 genus 265976 142 2 0 Serinicoccus sp. JLT9 140 0 1 species 1758689 0 1 117 genus 53457 1 2 Janibacter 857417 species 1 0 116 Janibacter indicus family 145357 1 4 0 2 285 Dermacoccaceae genus 745364 1 0 106 1 571913 species 106 0 Luteipulveratus mongoliensis 1 57499 genus 89 0 Kytococcus sedentarius 89 0 1 1276 species 0 88 57495 genus 1 Dermacoccus nishinomiyaensis 1 species 1274 88 0 85019 family 1 0 90 90 0 1 1696 genus Brevibacterium linens 1 1703 species 90 0 3 order 1643684 221 0 Nakamurellaceae 221 0 3 1 3 family 85031 Nakamurella 218 1 0 1 2 genus 53460 Nakamurella multipartita species 53461 1 0 217 622450 order 3 0 119 Actinopolysporaceae 3 1 622451 family 119 0 6 2 1 1849 genus 113 1 0 Actinopolyspora Actinopolyspora erythraea 112 0 1 414996 species Corynebacteriales 0 50 11367 85007 order 156 1 0 26 316606 family 1 0 26 286801 genus 1 1 286802 species 26 0 Segniliparus rotundus 2 family 85028 268 0 268 0 2 genus 2060 Tsukamurella paurometabola 2061 species 1 0 94 Tsukamurella tyrosinosolvens 1 57704 species 174 0 1 9 family 85026 633 0 6 Gordoniaceae Gordonia 8 1 2053 genus 627 0 7 Gordonia bronchialis 88 0 1 2054 species Gordonia terrae 0 80 2055 species 1 1 species 1004901 59 0 Gordonia iterans 2 no rank 2657482 182 0 Gordonia sp. YC-JH1 71 0 1 species 2059875 species 337191 1 0 111 Gordonia sp. KTR9 118 0 1 species 84595 Gordonia polyisoprenivorans 0 93 species 1136941 1 Gordonia phthalatica no rank 697024 2 0 9 2 1 1847725 genus 9 0 1 Lawsonella Lawsonella clevelandensis 8 0 1 species 1528099 2 0 139 85029 family 3 1 Dietziaceae 0 137 37914 genus 2 62 0 1 2617939 no rank 0 62 712270 species 1 Dietzia sp. oral taxon 368 75 0 1 499555 species Dietzia timorensis 3627 0 27 31 1 85025 family Nocardiaceae Rhodococcus genus 1827 1 23 0 61 2114 0 165 species 1830 1 Rhodococcus ruber 63 0 1 species 1833 Rhodococcus erythropolis 0 814 192944 no rank 12 Rhodococcus sp. YL-1 1 species 1045808 36 0 32 0 1 1723645 species Rhodococcus sp. 008 Rhodococcus sp. PBTS 1 0 89 species 1653478 1 31 0 1 1807790 species Rhodococcus sp. BH4 Rhodococcus sp. MTM3W5.2 1 species 1805827 139 0 Rhodococcus sp. B7740 0 54 1564114 species 1 Rhodococcus sp. WB1 0 152 species 1033922 1 39 0 1 1727214 species Rhodococcus sp. H-CA8f Rhodococcus sp. 2G species 1570939 1 0 73 Rhodococcus sp. p52 0 57 species 935199 1 1 species 1653479 48 0 Rhodococcus sp. PBTS 2 Rhodococcus sp. WMMA185 64 0 1 679318 species Rhodococcus qingshengii 33 0 1 species 334542 species 1828 1 0 44 Rhodococcus fascians 1 191292 species 155 0 Rhodococcus aetherivorans 103816 species 1 0 88 Rhodococcus pyridinivorans Rhodococcus jostii 0 158 132919 species 1 Rhodococcus hoagii 141 0 1 43767 species Rhodococcus opacus 1 37919 species 310 0 Rhodococcus rhodochrous 82 0 1 species 1829 Nocardia 17 0 1486 1817 genus 7 1 0 197 37330 species 1 Nocardia nova 1 species 37332 173 0 Nocardia seriolae 37329 species 1 0 246 Nocardia farcinica Nocardia terpenica 0 238 455432 species 1 Nocardia cyriacigeorgica 0 231 species 135487 1 Nocardia brasiliensis 1 species 37326 384 0 1 51 family 1653 1095 4 0 Corynebacteriaceae 15 0 1091 1716 genus 50 1 Corynebacterium 0 10 species 108486 1 Corynebacterium falsenii 10 0 1 1652495 species Corynebacterium crudilactis Corynebacterium frankenforstense 62 0 1 1230998 species Corynebacterium pseudotuberculosis 9 0 1 1719 species 161899 species 1 0 15 Corynebacterium singulare species 38305 1 0 44 Corynebacterium vitaeruminis 1 species 1717 9 0 Corynebacterium diphtheriae species 1050174 1 0 10 Corynebacterium epidermidicanis 21 0 1 43771 species Corynebacterium urealyticum Corynebacterium atypicum 40 0 1 species 191610 19 0 1 28028 species Corynebacterium flavescens Corynebacterium terpenotabidum 0 12 89154 species 1 Corynebacterium humireducens 44 0 1 1223514 species Corynebacterium stationis species 1705 1 0 6 1 575200 species 46 0 Corynebacterium maris species 92706 1 0 6 [Brevibacterium] flavum 1 1408191 species 8 0 Corynebacterium deserti Corynebacterium ulcerans 0 11 65058 species 1 species 187491 1 0 24 Corynebacterium glaucum Corynebacterium halotolerans 0 69 species 225326 1 Corynebacterium efficiens 1 152794 species 24 0 Corynebacterium ureicelerivorans 0 19 401472 species 1 0 24 no rank 2624378 2 Corynebacterium sp. NML98-0116 1 702967 species 12 0 Corynebacterium sp. ATCC 6931 1 species 1487956 12 0 Corynebacterium sphenisci 96 0 1 191493 species Corynebacterium simulans 27 0 1 146827 species Corynebacterium marinum 0 28 species 349751 1 Corynebacterium mustelae 1 571915 species 2 0 161879 species 1 0 4 Corynebacterium kroppenstedtii Corynebacterium aurimucosum 1 169292 species 23 0 Corynebacterium doosanense 1 1121358 species 34 0 species 1718 1 0 20 Corynebacterium glutamicum species 258224 1 0 18 Corynebacterium resistens Corynebacterium imitans 22 0 1 species 156978 0 26 species 1231000 1 Corynebacterium lactis 9 0 1 species 35757 Corynebacterium cystitidis 1 species 1697 7 0 Corynebacterium ammoniagenes 14 0 1 160386 species Corynebacterium casei Corynebacterium striatum 0 36 43770 species 1 Corynebacterium aquilae 1 species 203263 18 0 Corynebacterium uterequi 1072256 species 1 0 22 1 species 38289 25 0 Corynebacterium jeikeium 1404244 species 1 0 16 Corynebacterium glyciniphilum 0 2 species 161896 1 Corynebacterium camporealensis 0 8 42817 species 1 Corynebacterium argentoratense 1 species 35755 1 0 Corynebacterium kutscheri 1 1727 species 55 0 Corynebacterium variabile 136857 species 1 0 15 Corynebacterium testudinoris Corynebacterium phocae 6 0 1 species 161895 Mycobacteriaceae 1762 family 56 1 6 0 5520 1 genus 697025 29 0 Hoyosella subflava 29 0 1 species 639313 300 0 5 670516 genus Mycobacterium abscessus 0 94 species 36809 1 Mycobacterium saopaulense 1 species 1578165 46 0 0 44 1774 species 1 Mycobacterium chelonae Mycobacterium immunogenum 64 0 1 species 83262 Mycobacterium stephanolepidis 1520670 species 1 0 52 2 1073531 genus 202 0 Mycobacterium sinense species 875328 1 0 100 Mycobacterium terrae 102 0 1 1788 species 3236 213 0 1 34 genus 1763 Mycobacterium 0 91 1781 species 1 Mycobacterium marinum 2642494 no rank 13 0 1373 1 species 1561223 55 0 Mycobacterium sp. QIA-37 Mycobacterium sp. YC-RL4 species 1682113 1 0 110 Mycobacterium sp. MCS 0 133 164756 species 1 Mycobacterium sp. djl-10 112 0 1 species 1879023 0 105 species 212767 1 Mycobacterium sp. JS623 Mycobacterium sp. NRRL B-3805 82 0 1 1570328 species species 1168287 1 0 47 Mycobacterium sp. MOTT36Y Mycobacterium sp. JLS 149 0 1 species 164757 0 126 species 2051552 1 Mycobacterium sp. PYR15 Mycobacterium sp. EPa45 0 81 species 1545728 1 Mycobacterium sp. VKM Ac-1817D 104 0 1 species 1273687 134 0 1 1920667 species Mycobacterium sp. WY10 0 135 species 189918 1 Mycobacterium sp. KMS Mycobacterium ulcerans 0 70 species 1809 1 Mycobacterium leprae species 1769 1 0 13 Mycobacterium haemophilum 64 0 1 29311 species 1 species group 2249310 113 0 Mycobacterium shigaense 113 0 1 species 722731 0 221 species group 77643 4 Mycobacterium tuberculosis 1773 species 3 1 0 57 162 Mycobacterium bovis 1 1765 biotype 52 0 biotype 33894 1 0 53 Mycobacterium africanum Mycobacterium canettii 59 0 1 78331 species Mycobacterium dioxanotrophicus 0 183 species 482462 1 8 species group 120793 739 0 1 339268 species 157 0 Mycobacterium colombiense 37 0 1 1138383 species Mycobacterium paraintracellulare Mycobacterium intracellulare 50 0 220 1767 species 4 1 1 subspecies 1203599 50 0 Mycobacterium yongonense Mycobacterium indicus pranii subspecies 35617 1 0 52 68 0 1 222805 subspecies Mycobacterium chimaera 256 0 1 species 1764 Mycobacterium avium Mycobacterium marseillense 1 701042 species 69 0 Mycobacterium liflandii 60 0 1 261524 species 1768 species 1 0 96 Mycobacterium kansasii genus 1866885 13 0 1747 Mycobacterium phlei species 1771 1 0 192 Mycobacterium litorale 758802 species 1 0 152 Mycobacterium fortuitum 1766 species 1 0 94 Mycobacterium neoaurum 82 0 1 species 1795 81 0 1 36814 species Mycobacterium rhodesiae Mycobacterium thermoresistibile 1797 species 1 0 131 Mycobacterium goodii 0 160 species 134601 1 Mycobacterium vaccae 0 119 species 1810 1 Mycobacterium chubuense 0 185 species 1800 1 1 species 1804 130 0 Mycobacterium gilvum Mycobacterium aurum species 1791 1 0 138 Mycobacterium vanbaalenii 1 species 110539 152 0 Mycobacterium smegmatis 131 0 1 1772 species 1 8 order 1643682 728 2 0 Geodermatophilales Geodermatophilaceae 1 7 family 85030 726 16 0 Modestobacter 6 0 270 88138 genus 2 1 Modestobacter marinus 0 264 477641 species 1 Blastococcus 2 0 214 genus 38501 1 2 Blastococcus saxobsidens 212 0 1 species 138336 226 1 0 1 2 genus 1860 Geodermatophilus Geodermatophilus obscurus 1 species 1861 225 0 0 411 order 2037 15 Actinomycetaceae 2049 family 15 1 6 0 411 13 0 1 genus 2050 1 species 2051 13 0 Mobiluncus curtisii 0 1 28263 genus 1 Arcanobacterium haemolyticum 1 species 28264 1 0 Actinomyces 1 9 genus 1654 337 12 0 0 29 544580 species 1 Actinomyces oris 5 0 1 species 1852377 Actinomyces pacaensis 0 53 species 1960083 1 Actinomyces gaoshouyii 3 2609248 no rank 149 0 1 2081702 species 35 0 Actinomyces sp. oral taxon 897 70 0 1 712122 species Actinomyces sp. oral taxon 414 Actinomyces sp. Chiba101 44 0 1 species 1851395 Actinomyces sp. VUL4_3 species 1912795 1 0 8 Actinomyces radicidentis 0 81 species 111015 1 10 0 1 1653174 genus Actinotignum schaalii 1 species 59505 10 0 2529408 genus 1 0 24 0 24 species 52773 1 Actinomyces meyeri 0 20 genus 1069494 1 20 0 1 species 1661 Trueperella pyogenes 1752188 no rank 4 0 15 Actinobacteria bacterium IMCC26103 0 4 species 1848756 1 Actinobacteria bacterium IMCC25003 1 1848255 species 5 0 Actinobacteria bacterium IMCC19121 1 1848754 species 5 0 0 1 species 1848755 1 Actinobacteria bacterium IMCC26077 144 0 1 1 4 class 84992 Acidimicrobiia Acidimicrobiales 1 0 143 84993 order 3 1 84994 family 1 0 51 0 51 genus 53634 1 Acidimicrobium ferrooxidans 0 51 species 53635 1 2448023 family 1 0 91 1 682522 genus 91 0 467094 species 1 0 91 Ilumatobacter coccineus 3 1497346 class 424 0 order 588673 1 3 0 9 424 Solirubrobacterales family 320583 1 2 4 0 415 Conexibacteraceae 0 411 191494 genus 1 species 191495 1 0 411 Conexibacter woesei 4 84995 class 111 0 Rubrobacterales 111 5 0 4 1 84996 order 0 1 106 family 84997 1 3 Rubrobacteraceae 2 42255 genus 105 0 0 36 species 42256 1 Rubrobacter radiotolerans Rubrobacter xylanophilus 0 69 49319 species 1 Coriobacteriia 413 0 2 1 20 class 84998 1 11 order 1643822 257 7 0 Eggerthellales family 1643826 10 0 250 79603 genus 1 0 2 0 2 79604 species 1 Denitrobacterium detoxificans 36 0 1 genus 447020 36 0 1 species 446660 Adlercreutzia equolifaciens 1 genus 84162 5 0 Cryptobacterium curtum 0 5 84163 species 1 genus 644652 1 3 0 1 109 Gordonibacter Gordonibacter urolithinfaciens 1 1335613 species 42 0 Gordonibacter massiliensis 1 species 1841863 66 0 84111 genus 2 0 61 1 no rank 2648737 14 0 1 502558 species 14 0 Eggerthella sp. YY7918 47 0 1 84112 species Eggerthella lenta 34 0 1 genus 84108 species 84110 1 0 34 Slackia heliotrinireducens 1981050 genus 1 0 3 3 0 1 species 1944646 Phoenicibacter massiliensis Coriobacteriales 1 8 order 84999 154 2 0 72 0 3 84107 family 6 0 1 genus 102106 1 74426 species 6 0 Collinsella aerofaciens 1 genus 33870 35 0 Coriobacterium glomerans species 33871 1 0 35 0 31 no rank 84113 1 1531429 species 1 0 31 Coriobacteriaceae bacterium 68-1-3 4 1643824 family 80 0 0 1 80 genus 133925 1 4 Olsenella 8 0 1 no rank 2638792 712411 species 1 0 8 Olsenella sp. oral taxon 807 1 species 133926 28 0 Olsenella uli Olsenella sp. Marseille-P2300 species 1805478 1 0 43 1 67819 phylum 84 0 84 0 1 1663419 class 1 order 1663425 84 0 family 1663426 1 0 84 84 0 1 genus 1005038 0 84 species 1005039 1 Fimbriimonas ginsengisoli clade 1798711 92 0 722 92 1117 phylum 722 0 307596 class 4 0 81 4 1 307595 order 81 0 2 Gloeobacterales 0 79 family 1890422 3 Gloeobacter 3 1 33071 genus 79 0 1 33 0 1 species 1416614 Gloeobacter kilaueensis species 33072 1 0 45 Gloeobacter violaceus 4 0 1 order 1890505 1890528 family 1 0 4 1 54298 genus 4 0 Chroococcidiopsis thermalis 54299 species 1 0 4 107 0 18 subclass 1301283 10 1118 order 34 0 5 1890450 family 19 0 2 genus 28070 6 0 1 2546356 species 2 0 Cyanothece sp. PCC 7424 1 65393 strain 2 0 4 0 1 2546359 species Cyanothece sp. PCC 7822 1 strain 497965 4 0 2 2546365 genus 11 0 0 11 species 2546366 2 1 41431 strain 6 0 Cyanothece sp. PCC 8801 Cyanothece sp. PCC 8802 1 395962 strain 5 0 263510 genus 1 0 2 species 2546360 1 0 2 Cyanothece sp. ATCC 51142 2 0 1 strain 43989 7 0 2 1890449 family 2 genus 1125 7 0 1 no rank 2643300 3 0 Microcystis sp. MC19 3 0 1 species 1967666 0 4 1126 species 1 Microcystis aeruginosa 8 0 3 family 1890464 0 6 102231 genus 1 1 no rank 2623012 6 0 Gloeocapsa sp. PCC 7428 6 0 1 1173026 species 0 2 669357 genus 2 2 2625037 no rank 2 0 1 species 1617448 1 0 Geminocystis sp. NIES-3709 1 species 1615909 1 0 Geminocystis sp. NIES-3708 0 73 1150 order 8 1892249 family 2 0 12 Cyanothece 0 1 12 genus 43988 1 2 11 0 1 2649277 no rank 0 11 395961 species 1 Cyanothece sp. PCC 7425 1 1892252 family 7 0 1 genus 44471 7 0 2642155 no rank 1 0 7 0 7 species 1173027 1 Microcoleus sp. PCC 7113 family 1892255 1 0 3 241421 genus 1 0 3 3 0 1 241425 species Crinalium epipsammum 1892254 family 3 0 27 0 9 1155738 genus 1 1 species 1155739 9 0 Moorea producens 2 1158 genus 18 0 species 118323 1 0 3 Oscillatoria acuminata Oscillatoria nigro-viridis 0 15 482564 species 1 24 0 1 1892251 family 0 24 genus 63132 1 2648775 no rank 1 0 24 24 0 1 1173025 species Geitlerinema sp. PCC 7407 445 0 2 46 1 1890424 order Synechococcales 1890429 family 1 0 19 genus 155977 1 0 19 0 19 species 155978 1 Acaryochloris marina 3 1890428 family 9 0 9 0 3 genus 1142 0 9 no rank 2640012 3 3 0 1 species 2116702 Synechocystis sp. IPPAS B-1465 Synechocystis sp. PCC 6714 0 3 species 1147 1 Synechocystis sp. PCC 6803 3 0 1 1148 species 0 4 333 family 1890426 1 31 Synechococcaceae 7 0 1 genus 146785 Thermosynechococcus elongatus 1 146786 species 7 0 1 0 79 167375 genus 3 1 Cyanobium no rank 2627006 1 0 29 Cyanobium sp. NIES-981 species 1851505 1 0 29 species 59930 1 0 49 Cyanobium gracile Synechococcus 239 0 6 25 1 1129 genus Synechococcus elongatus 0 5 32046 species 1 1 33070 species 2 0 Synechococcus lividus 2626047 no rank 22 0 226 321332 species 1 0 16 Synechococcus sp. JA-2-3B'a(2-13) 1 321327 species 17 0 Synechococcus sp. JA-3-3Ab 0 31 species 1916956 1 Synechococcus sp. SynAce01 Synechococcus sp. WH 7803 species 32051 1 0 4 Synechococcus sp. KORDI-49 0 32 species 585423 1 Synechococcus sp. CC9605 1 species 110662 13 0 Synechococcus sp. KORDI-100 species 1280380 1 0 23 Synechococcus sp. PCC 7502 1 1173263 species 9 0 Synechococcus sp. WH 8103 1 29410 species 9 0 0 4 316279 species 1 Synechococcus sp. CC9902 species 166314 1 0 12 Synechococcus sp. WH 8109 1 species 1827144 5 0 Synechococcus sp. NIES-970 1 374981 species 6 0 Synechococcus sp. PCC 7003 Synechococcus sp. RCC307 0 7 species 316278 1 Synechococcus sp. WH 8102 0 11 84588 species 1 Synechococcus sp. PCC 7117 species 195498 1 0 4 195248 species 1 0 1 Synechococcus sp. PCC 8807 species 585425 1 0 8 Synechococcus sp. KORDI-52 Synechococcus sp. PCC 73109 1 species 374982 4 0 Synechococcus sp. PCC 6312 1 0 1 195253 species 1 64471 species 3 0 Synechococcus sp. CC9311 Synechococcus sp. PCC 7002 6 0 1 32049 species 4 0 1 13034 genus 0 4 species 292566 1 Dactylococcopsis salina 0 10 family 2303730 2 1 2 genus 170610 10 0 3 Halomicronema 7 0 1 1209493 species Halomicronema hongdechloris 4 1890438 family 51 0 47251 genus 4 0 51 no rank 2650499 3 0 40 4 0 1 species 111781 Leptolyngbya sp. PCC 7376 Leptolyngbya sp. O-77 1080068 species 1 0 30 0 6 species 1752064 1 Leptolyngbya sp. NIES-3755 Leptolyngbya boryana 0 11 species 1184 1 6 0 1 1890436 family 1152 genus 1 0 6 0 6 2593292 no rank 1 species 82654 1 0 6 Pseudanabaena sp. PCC 7367 0 15 family 1213 3 1218 genus 3 0 15 10 0 1 1219 species Prochlorococcus marinus 2627481 no rank 2 0 5 1 0 1 species 1501268 Prochlorococcus sp. MIT 0604 1 species 1501269 4 0 Prochlorococcus sp. MIT 0801 21 1161 order 81 0 2 0 1 family 1185 373984 genus 1 0 2 2676603 no rank 1 0 2 Rivularia sp. PCC 7116 2 0 1 373994 species 13 family 1162 47 0 0 3 264688 genus 1 264691 species 1 0 3 Trichormus variabilis 11 0 3 1163 genus 0 7 2619674 no rank 2 Anabaena sp. 90 1 46234 species 5 0 1 species 1647413 2 0 Anabaena sp. WA102 1 species 1165 4 0 Anabaena cylindrica 0 33 genus 1177 9 0 7 species 272131 1 Nostoc punctiforme Nostoc flagelliforme 0 1 1306274 species 1 0 25 2593658 no rank 7 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 0 1 1261031 species 5 0 1 103690 species Nostoc sp. PCC 7120 species 317936 1 0 1 Nostoc sp. PCC 7107 Nostoc sp. CENA543 4 0 1 1869241 species 1 0 1 species 28072 Nostoc sp. PCC 7524 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 8 species 1618022 1 5 0 1 species 1751286 Nostoc sp. NIES-3756 0 21 family 2661849 5 5 1186 genus 21 0 4 no rank 2619626 19 0 0 9 species 1954171 1 Calothrix sp. NIES-2098 Calothrix sp. PCC 7507 species 99598 1 0 2 3 0 1 2005469 species Calothrix sp. NIES-4071 Calothrix sp. NIES-4101 1 species 2005461 5 0 Calothrix parietina 1 species 32054 2 0 9 0 1 family 1892263 9 0 1 1190 genus 9 0 1 no rank 494603 Fischerella sp. NIES-3754 0 9 1752063 species 1 1 1219117 no rank 2 0 Nostocales cyanobacterium HT-58-2 1940762 species 1 0 2 0 4 order 52604 2 1890498 family 1 0 3 genus 102115 1 0 3 3 0 1 no rank 2642663 1807358 species 1 0 3 Stanieria sp. NIES-3757 0 1 family 1890500 1 genus 44474 1 0 1 Pleurocapsa minor 1 54308 species 1 0 0 10 1859062 no rank 1 genus 262406 1 0 10 Thermobaculum terrenum 166501 species 1 0 10 859 0 30 phylum 1297 859 0 7 30 1 188787 class Deinococci 0 51 2762275 order 1 51 0 1 332247 family 1 332248 genus 51 0 0 51 332249 species 1 Truepera radiovictrix 557 0 9 1 15 order 118964 Deinococcales Deinococcaceae family 183710 1 14 0 1 548 Deinococcus 547 0 4 13 1 1298 genus Deinococcus soli Cha et al. 2016 1 species 1309411 34 0 Deinococcus geothermalis 68909 species 1 0 22 56 0 1 species 309887 Deinococcus maricopensis 41 0 1 55148 species Deinococcus proteolyticus 2623546 no rank 1 0 53 0 53 species 2080419 1 Deinococcus sp. NW-56 Deinococcus actinosclerus 0 70 1768108 species 1 1 species 432329 42 0 Deinococcus peraridilitoris 0 82 species 502394 1 Deinococcus gobiensis Deinococcus puniceus 1 species 1182568 28 0 Deinococcus radiodurans 42 0 1 1299 species Deinococcus swuensis 1182571 species 1 0 46 Deinococcus deserti 0 27 310783 species 1 Thermales order 68933 1 13 0 4 244 12 1 188786 family 240 6 0 Thermaceae 1 genus 186191 16 0 Marinithermus hydrothermalis 16 0 1 186192 species 118 0 7 270 genus Thermus oshimai species 56957 1 0 17 Thermus thermophilus species 274 1 0 39 0 18 no rank 2619321 1 Thermus sp. CCB_US3_UF1 1 1111069 species 18 0 456163 species 1 0 12 Thermus parvatiensis species 37636 1 0 7 Thermus scotoductus Thermus brockianus species 56956 1 0 11 1 species 271 14 0 Thermus aquaticus 65551 genus 2 0 52 52022 species 1 0 32 Meiothermus silvanus Meiothermus ruber 20 0 1 species 277 1 genus 208447 48 0 Oceanithermus profundus 1 species 187137 48 0 20 203691 phylum 156 0 class 203692 20 0 156 6 1643688 order 33 0 family 170 6 0 33 10 0 1 genus 338321 0 10 29510 species 1 Turneriella parva 23 0 5 genus 171 Leptospira santarosai 28183 species 1 0 7 species 172 1 0 2 Leptospira biflexa 0 5 28452 species 1 Leptospira alstonii Leptospira interrogans species 173 1 0 2 7 0 1 species 174 Leptospira borgpetersenii Spirochaetales 14 1 136 order 123 0 1 1 0 1 1643685 family 1 138 genus 1 0 Borrelia miyamotoi 1 species 47466 1 0 Spirochaetaceae 137 family 12 1 1 0 121 1911556 genus 1 0 1 Sediminispirochaeta smaragdinae 0 1 species 55206 1 0 13 399320 genus 2 1131707 species 1 0 8 Sphaerochaeta pleomorpha 0 5 species 273376 1 Sphaerochaeta coccoides 0 54 genus 157 5 1 150829 species 11 0 Treponema azotonutricium 11 0 1 species 81028 Treponema brennaborense Treponema primitia 88058 species 1 0 10 0 17 no rank 2638727 1 species 1539298 1 0 17 Treponema sp. OMZ 838 Treponema caldarium 215591 species 1 0 5 0 3 genus 1616789 1 1 species 1307761 3 0 Salinispira pacifica 2 146 genus 49 0 Spirochaeta africana 1 species 46355 30 0 Spirochaeta thermophila 19 0 1 154 species 2732 0 16 57723 phylum Acidobacteriia 2698 0 4 14 1 204432 class 0 547 332160 order 3 Solibacteraceae 547 0 3 1 3 family 332161 332162 genus 2 1 1 0 544 Candidatus Solibacter 0 543 species 332163 1 Candidatus Solibacter usitatus Acidobacteriales 0 2 2147 order 204433 1 10 0 11 2145 family 204434 1 9 Acidobacteriaceae Candidatus Koribacter 0 2 205 658061 genus 2 1 Candidatus Koribacter versatilis 203 0 1 658062 species Granulicella 3 0 1075 genus 940557 1 3 Granulicella mallensis 940614 species 1 0 605 Granulicella tundricola 1 species 940615 467 0 1 genus 33973 330 0 Acidobacterium capsulatum species 33075 1 0 330 392733 genus 2 0 524 Terriglobus roseus species 392734 1 0 265 Terriglobus saanensis 1 870903 species 259 0 1562566 class 2 1 1 0 34 Blastocatellia 458032 genus 1 0 33 Chloracidobacterium thermophilum 0 33 458033 species 1 48 clade 1783257 2162 0 0 36 phylum 134625 2 class 1921781 2 0 36 36 0 1 1 2 order 1921782 Kiritimatiellales 1 family 1921783 35 0 35 0 1 genus 1921784 Kiritimatiella glycovorans 1 1307763 species 35 0 phylum 256845 2 0 45 class 1313211 2 0 45 Victivallales 2 1 278082 order 45 0 1 0 44 1674876 no rank 1 0 44 species 2094242 1 Victivallales bacterium CCUG 44730 9 0 4 phylum 204428 204429 class 4 0 9 0 1 order 51291 1 1 family 809 1 0 1 0 1 no rank 1113537 1 810 genus 1 0 species 83556 1 0 1 Chlamydia felis 1963360 order 3 0 8 0 3 family 92712 1 1 genus 34093 3 0 1 species 83561 3 0 Simkania negevensis 1 family 92714 2 0 0 2 71666 genus 1 Waddlia chondrophila 0 2 71667 species 1 3 0 1 92713 family genus 83551 1 0 3 3 0 1 species 83552 Parachlamydia acanthamoebae 0 1197 203682 phylum 22 1 16 class 203683 1103 3 0 Planctomycetia 0 75 order 2691354 3 17 0 1 family 2691358 17 0 1 1676125 genus Thermogutta terrifontis 1 1331910 species 17 0 0 58 2691357 family 2 27 0 1 123 genus 27 0 1 species 125 Pirellula staleyi 1 genus 265488 31 0 Rhodopirellula baltica 265606 species 1 0 31 order 2691356 3 0 435 0 435 1763524 family 3 1 127 genus 39 0 1 128 species 39 0 Isosphaera pallida 233 0 1 1763521 genus Paludisphaera borealis 0 233 1387353 species 1 163 0 1 genus 466152 Singulisphaera acidiphila 0 163 466153 species 1 409 0 7 8 1 112 order Planctomycetales 402 1 0 7 1 126 family Planctomycetaceae 312 0 3 3 1 118 genus Planctomyces 309 0 2 2648843 no rank Planctomyces sp. SH-PL14 123 0 1 species 1632864 1 1636152 species 186 0 Planctomyces sp. SH-PL62 37 0 1 1649490 genus 37 0 1 species 119 Rubinisphaera brasiliensis 18 0 1 1649480 genus Planctopirus limnophila 18 0 1 120 species 1 genus 1936111 34 0 Fuerstia marisgermanicae species 1891926 1 0 34 1 2691355 order 181 0 1914233 family 1 0 181 1 genus 113 181 0 2622970 no rank 1 0 181 Gemmata sp. SH-PL17 species 1630693 1 0 181 0 93 666505 class 5 Phycisphaerales 666506 order 3 1 0 1 89 Phycisphaeraceae 88 1 0 1 2 family 666507 genus 666508 1 0 87 Phycisphaera mikurensis 547188 species 1 0 87 4 0 2 order 2483366 0 4 family 2483367 2 2 2483368 genus 4 0 Phycisphaerae bacterium L21-RPul-D3 0 1 1940790 species 1 1941349 species 1 0 3 Phycisphaerae bacterium ST-PulAB-D4 0 1 2517206 class 1 order 1127829 1 0 1 family 1127830 1 0 1 1 0 1 genus 380738 Candidatus Kuenenia stuttgartiensis 1 174633 species 1 0 Verrucomicrobia 74201 phylum 18 1 2 0 875 Verrucomicrobiae 3 1 203494 class 34 1 0 0 33 order 48461 2 33 0 2 family 1647988 239934 genus 2 0 33 1 239935 species 21 0 Akkermansia muciniphila species 1679444 1 0 12 Akkermansia glycaniphila 621 2 0 1 8 class 414999 Opitutae Opitutales order 415000 1 6 5 0 612 Opitutaceae 15 0 607 family 134623 1 5 0 3 220 genus 178440 1 2 Opitutus 0 217 107709 species 1 Opitutus terrae genus 1961799 1 0 202 Lacunisphaera limnophila 1 1838286 species 202 0 0 170 no rank 278955 1 species 794903 1 0 170 Opitutaceae bacterium TAV5 415001 order 1 0 7 0 7 family 415002 1 7 0 1 genus 442430 Coraliomargarita akajimensis 7 0 1 species 395922 206 0 2 417295 no rank 1 species 1637999 87 0 Verrucomicrobia bacterium IMCC26134 1 2026799 species 119 0 Verrucomicrobia bacterium 134549 class 1 0 4 genus 134550 1 0 4 4 0 1 2648876 no rank 4 0 1 1704307 species Candidatus Xiphinematobacter sp. Idaho Grape 3 1955630 class 8 0 8 0 3 order 717963 3 family 717964 8 0 8 0 6 1 3 genus 511745 Methylacidiphilum Methylacidiphilum fumariolicum 591154 species 1 0 1 0 1 511746 species 1 Methylacidiphilum infernorum 13 0 4 phylum 200930 4 68337 class 13 0 191393 order 4 0 13 191394 family 4 0 13 2351 genus 1 0 3 0 3 2352 species 1 Flexistipes sinusarabici 1 0 1 genus 117999 1 0 1 species 118000 Denitrovibrio acetiphilus 1 53572 genus 4 0 197162 species 1 0 4 Deferribacter desulfuricans genus 545865 1 0 5 Calditerrivibrio nitroreducens species 477976 1 0 5 21 0 9 phylum 200783 0 21 class 187857 9 1 order 1485951 4 0 0 4 family 558314 1 1 171868 genus 4 0 1 228745 species 4 0 Thermovibrio ammonificans 8 32069 order 17 0 family 224027 3 0 3 1 182899 genus 1 0 Persephonella marina species 309805 1 0 1 2 212790 genus 2 0 no rank 2619248 1 0 1 0 1 436114 species 1 Sulfurihydrogenibium sp. YO3AOP1 Sulfurihydrogenibium azorense 1 0 1 309806 species 5 family 64898 14 0 0 5 2713 genus 1 63363 species 1 0 5 Aquifex aeolicus 0 2 75905 genus 2 Thermocrinis ruber 0 1 species 75906 1 Thermocrinis albus 0 1 species 136094 1 1 genus 939 6 0 Hydrogenobacter thermophilus 0 6 species 940 1 168657 genus 1 0 1 Hydrogenobaculum 2 no rank 2323 6 0 1783234 clade 2 0 6 5 0 1 95818 phylum 5 0 1 1895827 no rank Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 5 0 1 2056494 species 0 1 clade 95901 1 1 0 1 class 2497643 1 2497644 order 1 0 0 1 2497645 family 1 0 1 1551504 genus 1 Candidatus Babela massiliensis 673862 species 1 0 1 1 1930617 phylum 21 0 0 21 1962850 class 1 1962852 order 1 0 21 family 1962854 1 0 21 0 21 187144 genus 1 Caldithrix abyssi 0 21 187145 species 1 200918 phylum 12 0 22 12 class 188708 22 0 2419 order 8 0 13 1643950 family 1 0 2 2422 genus 1 0 2 Fervidobacterium pennivorans 2 0 1 species 93466 0 11 family 188709 7 0 10 genus 2335 6 1 species 1508419 2 0 Thermotoga caldifontis 1 0 1 species 1508420 Thermotoga profunda 0 4 2631113 no rank 2 1 species 126738 2 0 Thermotoga sp. RQ7 1 species 1157948 2 0 Thermotoga sp. 2812B 1 species 2337 2 0 Thermotoga neapolitana Thermotoga maritima 1 0 1 2336 species 1 genus 1643951 1 0 0 1 species 57487 1 Pseudothermotoga hypogea order 1643946 1 0 2 1 1643948 family 2 0 0 2 genus 1184396 1 1184387 species 1 0 2 Mesotoga prima 7 0 3 order 1643947 0 7 family 1643949 3 5 0 1 1511648 genus Defluviitoga tunisiensis 5 0 1 species 1006576 2 0 2 genus 160798 2640159 no rank 1 0 1 1545835 species 1 0 1 Marinitoga sp. 1137 Marinitoga piezophila 0 1 149715 species 1 18 0 5 phylum 32066 0 18 class 203490 5 0 18 203491 order 5 203492 family 4 0 14 genus 848 4 0 14 Fusobacterium nucleatum 1 851 species 8 0 Fusobacterium necrophorum 1 species 859 1 0 Fusobacterium periodonticum 0 3 species 860 1 2 0 1 species 1583098 Fusobacterium hwasookii 1 1129771 family 4 0 1 genus 32068 4 0 1 species 826 4 0 Sebaldella termitidis 3 200940 phylum 10 0 3 67799 class 10 0 3 188710 order 10 0 3 family 188711 10 0 1740 genus 1 0 1 species 1295609 1 0 1 Thermodesulfobacterium geofontis 0 1 genus 444090 1 1653476 species 1 0 1 Caldimicrobium thiodismutans 1 241192 genus 8 0 Thermodesulfatator indicus 8 0 1 species 171695 0 15 200938 phylum 2 2 118001 class 15 0 2 order 189769 15 0 2 189770 family 15 0 Desulfurispirillum 0 1 15 genus 393029 1 2 1 species 936456 14 0 Desulfurispirillum indicum 7 0 3 68297 phylum 0 3 7 class 203486 1 3 Dictyoglomia order 203487 2 0 4 2 203488 family 4 0 2 genus 13 4 0 Dictyoglomus thermophilum 1 0 1 14 species Dictyoglomus turgidum 3 0 1 species 513050 0 164 40117 phylum 9 9 203693 class 164 0 Nitrospirales 164 1 0 9 1 189778 order 189779 family 8 0 163 0 149 genus 1234 4 1 species 42253 50 0 Nitrospira moscoviensis 1715989 species 1 0 30 Candidatus Nitrospira inopinata Nitrospira defluvii 35 0 1 330214 species 1 species 1325564 34 0 Nitrospira japonica 28261 genus 1 0 1 1 0 1 species 28262 Thermodesulfovibrio yellowstonii 3 179 genus 13 0 2 0 1 655606 species group Leptospirillum ferrooxidans 1 180 species 2 0 3 0 1 261386 species group 3 0 1 species 178606 Leptospirillum ferriphilum 1 species group 261385 8 0 Leptospirillum sp. Group II 'CF-1' 8 0 1 1660083 species 95102 0 15 1516 1 1224 phylum Proteobacteria 1553900 class 3 0 43 0 43 213481 order 3 43 0 3 213483 family 0 1 43 958 genus 3 1 Bdellovibrio Bdellovibrio exovorus 1 0 1 species 453816 species 959 1 0 41 Bdellovibrio bacteriovorus 0 11 class 580370 2 580371 order 2 0 11 11 0 2 580372 family 0 11 genus 377315 2 Mariprofundus aestuarium species 1921086 1 0 5 Mariprofundus ferrinatatus 0 6 species 1921087 1 31071 0 21 1 308 class 28216 Betaproteobacteria Nitrosomonadales 32003 order 32 1 5 0 634 0 71 family 2772226 3 Sulfuricella 40 2 0 2 1 935200 genus Sulfuricella denitrificans 38 0 1 649841 species 1778653 genus 1 0 31 no rank 2637784 1 0 31 31 0 1 species 1985873 Sulfuriferula sp. AH1 0 1 54 90627 family 4 1 Gallionellaceae 0 2 9 96 genus 2 1 Gallionella Gallionella capsiferriformans 0 7 370405 species 1 314343 genus 1 0 44 44 0 1 63745 species Sideroxydans lithotrophicus 0 1 95 32011 family 8 1 Methylophilaceae genus 1679002 1 0 1 Candidatus Methylopumilus turicensis 1 species 1581680 1 0 genus 81682 2 0 49 2634027 no rank 1 0 25 Methylovorus sp. MP688 species 887061 1 0 25 0 24 species 266009 1 Methylovorus glucosotrophus 8 0 2 genus 359407 1 1055487 species 6 0 Methylotenera versatilis 1 359408 species 2 0 Methylotenera mobilis 0 6 genus 16 1 1 no rank 2630143 6 0 Methylophilus sp. TWE2 6 0 1 1662285 species 0 30 404 genus 1 Methylobacillus flagellatus 30 0 1 405 species 1 4 family 2008793 226 4 0 Sterolibacteriaceae 1 378210 genus 128 0 0 128 2639971 no rank 1 1 1842540 species 128 0 Methyloversatilis sp. RAC08 Sulfuritalea 94 0 1 2 1 1054211 genus 93 0 1 748811 species Sulfuritalea hydrogenivorans 10 206379 family 89 0 0 35 914 genus 6 0 16 no rank 2609265 2 Nitrosomonas sp. Is79A3 species 261292 1 0 10 1 species 153948 6 0 Nitrosomonas sp. AL212 8 0 1 44577 species Nitrosomonas ureae 1 species 44574 5 0 Nitrosomonas communis Nitrosomonas europaea 1 species 915 4 0 species 916 1 0 2 Nitrosomonas eutropha Nitrosospira 54 1 0 4 1 35798 genus 1288494 species 1 0 15 Nitrosospira lacus 0 13 35799 species 1 Nitrosospira briensis Nitrosospira multiformis 1 1231 species 25 0 Thiobacillaceae 94 1 0 1 2 family 2008790 0 93 919 genus 1 Thiobacillus denitrificans 0 93 36861 species 1 1459 9 0 1 19 order 206389 Rhodocyclales 4 0 252 family 75787 1 5 Rhodocyclaceae no rank 75788 1 0 50 Rhodocyclaceae bacterium 0 50 species 1898103 1 Azospira 72 2 0 1 2 genus 146937 146939 species 1 0 70 Azospira oryzae 1 genus 551759 126 0 Aromatoleum aromaticum 1 551760 species 126 0 1 12 family 2008794 1151 0 13 Zoogloeaceae 15 0 527 12960 genus 5 1 Azoarcus species 2067960 1 0 76 Azoarcus sp. SY39 0 296 no rank 2629479 2 Azoarcus sp. CIB 198107 species 1 0 163 0 133 species 748247 1 Azoarcus sp. KH32C Azoarcus olearius 1 species 418699 140 0 0 13 611 genus 33057 1 6 Thauera 113 0 1 96773 species Thauera chlorobenzoica Thauera humireducens 105 0 1 species 1134435 103 0 1 59405 species Thauera aromatica 0 277 no rank 2609274 2 species 2005884 1 0 137 Thauera sp. K11 0 140 85643 species 1 Thauera sp. MZ1T 1 2008795 family 47 0 73029 genus 1 0 47 Dechloromonas aromatica 259537 species 1 0 47 0 67 no rank 119066 4 Candidatus Accumulibacter 65 3 0 2 1 327159 genus Candidatus Accumulibacter phosphatis 62 0 1 species 327160 33055 genus 2 0 2 Candidatus Kinetoplastibacterium crithidii 33056 species 1 0 1 Candidatus Kinetoplastibacterium desouzaii 994692 species 1 0 1 Neisseriales 5 0 974 order 206351 1 31 Neisseriaceae 4 0 232 481 family 18 1 1 genus 1193515 1 0 Snodgrassella alvi 1 species 1196083 1 0 47 0 2 genus 59 0 39 species 63 1 Vitreoscilla filiformis 0 8 2627922 no rank 1 Vitreoscilla sp. C1 0 8 96942 species 1 no rank 421605 1 0 2 Neisseriaceae bacterium DSM 100970 2 0 1 species 2052837 Neisseria 3 0 166 482 genus 12 1 1 495 species 5 0 Neisseria elongata Neisseria gonorrhoeae species 485 1 0 18 0 33 2623750 no rank 2 0 30 species 655307 1 Neisseria sp. KEM232 Neisseria sp. 10022 1 1853276 species 3 0 488 species 1 0 16 Neisseria mucosa 1 species 1853278 13 0 Neisseria sp. 10023 Neisseria lactamica 0 8 486 species 1 Neisseria meningitidis 38 0 1 487 species 1 species 490 15 0 Neisseria sicca species 326523 1 0 10 Neisseria zoodegmatis Neisseria weaveri species 28091 1 0 7 0 12 genus 538 1 Eikenella corrodens 12 0 1 539 species Chromobacteriaceae 1 12 family 1499392 737 0 8 1 0 47 genus 168470 1 2 Laribacter Laribacter hongkongensis 1 168471 species 46 0 0 468 90153 no rank 4 Chromobacterium genus 535 1 4 0 12 468 Chromobacterium violaceum 0 163 species 536 1 Chromobacterium vaccinii 0 174 1108595 species 1 1 no rank 2641838 119 0 Chromobacterium sp. ATCC 53434 119 0 1 2059672 species 93 6 0 1 2 genus 885864 Jeongeupia 0 87 no rank 2619593 1 Jeongeupia sp. USM3 1906741 species 1 0 87 568394 genus 2 1 0 1 95 Pseudogulbenkiania 94 0 1 2642558 no rank 94 0 1 748280 species Pseudogulbenkiania sp. NH8B 1 genus 187 26 0 26 0 1 no rank 2620219 Aquaspirillum sp. LM1 1938604 species 1 0 26 135 0 2 no rank 33809 species 543913 1 0 2 beta proteobacterium CB 1904640 species 1 0 133 Betaproteobacteria bacterium GR16-43 Burkholderiales 80840 order 219 1 145 0 27781 80841 no rank 2 0 118 species 1469502 1 0 112 Burkholderiales bacterium GJ-E10 1 species 1834205 6 0 Burkholderiales bacterium YL45 Oxalobacteraceae 2448 0 6 27 1 75682 family 392 0 6 4 1 202907 genus Collimonas Collimonas arenae 0 111 279058 species 1 Collimonas pratensis 125 0 1 species 279113 Collimonas fungivorans 150 0 1 158899 species 0 42 genus 303379 2 0 12 1809410 species 1 Herminiimonas arsenitoxidans Herminiimonas arsenicoxydans species 204773 1 0 30 7 1 29580 genus 529 6 0 Janthinobacterium Janthinobacterium agaricidamnosum 55508 species 1 0 113 Janthinobacterium svalbardensis 0 135 species 368607 1 4 no rank 2610881 275 0 Janthinobacterium sp. Marseille 29 0 1 375286 species 0 7 1236179 species 1 Janthinobacterium sp. B9-8 0 119 species 1938606 1 Janthinobacterium sp. LM6 1 1644131 species 120 0 Janthinobacterium sp. 1_2014MBL_MicDiv Herbaspirillum 665 0 20 6 1 963 genus Herbaspirillum rubrisubalbicans species 80842 1 0 117 no rank 2624150 1 0 86 86 0 1 species 2025949 Herbaspirillum sp. meg3 0 173 92645 species 1 Herbaspirillum frisingense Herbaspirillum hiltneri 123 0 1 341045 species species 964 1 0 146 Herbaspirillum seropedicae 0 13 genus 846 1 species 847 1 0 13 Oxalobacter formigenes Massilia 801 15 0 1 6 genus 149698 Massilia sp. B2 0 137 species 2045208 1 313 0 2 no rank 2609279 species 1707785 1 0 180 Massilia sp. WG5 Massilia sp. NR 4-1 0 133 1678028 species 1 Massilia sp. ZMN-3 species 2072590 1 0 150 0 186 1141883 species 1 Massilia putida Comamonadaceae 56 1 80864 family 5206 54 0 0 1 102 genus 1649468 1 2 Melaminivora 0 101 2641902 no rank 1 Melaminivora sp. SC2-9 101 0 1 2109913 species Hydrogenophaga 0 1 341 47420 genus 4 1 Hydrogenophaga crassostreae 1 1763535 species 55 0 0 285 no rank 2610897 2 1 species 1842537 132 0 Hydrogenophaga sp. RAC07 Hydrogenophaga sp. PBC 1 species 795665 153 0 75 0 1 238749 genus Diaphorobacter polyhydroxybutyrativorans 1 1546149 species 75 0 1 9 genus 12916 746 29 0 Acidovorax Acidovorax citrulli 0 126 80869 species 1 75 0 1 721785 species Acidovorax ebreus 62 0 1 553814 species Acidovorax sp. NA3 Acidovorax avenae 1 species 80867 127 0 no rank 2684926 4 0 327 Acidovorax sp. KKS102 75 0 1 358220 species Acidovorax sp. RAC01 0 70 1842533 species 1 Acidovorax sp. T1 species 1858609 1 0 93 232721 species 1 0 89 Acidovorax sp. JS42 0 149 2490452 genus 2 Comamonadaceae bacterium B1 0 74 species 1458426 1 species 1458425 1 0 75 Comamonadaceae bacterium A1 genus 283 1 4 0 5 263 Comamonas 1082851 species 1 0 102 Comamonas serinivorans 0 119 species 285 1 Comamonas testosteroni Comamonas kerstersii 0 37 species 225992 1 34072 genus 5 1 27 0 1258 Variovorax 1 species 436515 253 0 Variovorax boronicumulans Variovorax paradoxus 1 species 34073 543 0 435 0 2 663243 no rank species 2126319 1 0 297 Variovorax sp. PMC12 138 0 1 species 1795631 Variovorax sp. PAMC 28711 1 2678886 genus 90 0 90 0 1 species 2116657 Melaminivora sp. SC2-7 Polaromonas 222 0 1 3 1 52972 genus Polaromonas naphthalenivorans 1 216465 species 110 0 no rank 2638319 1 0 111 0 111 296591 species 1 Polaromonas sp. JS666 665874 genus 2 0 45 2 no rank 2626134 45 0 18 0 1 1678129 species Limnohabitans sp. 103DPR2 1 species 1678128 27 0 Limnohabitans sp. 63ED37-2 0 1 50 genus 352450 1 2 Simplicispira 49 0 1 2109915 species Simplicispira sp. SC1-8 174951 genus 2 1 1 0 367 Ramlibacter 1 94132 species 366 0 Ramlibacter tataouinensis Ottowia genus 219181 1 3 0 2 139 no rank 2645081 1 0 46 Ottowia sp. oral taxon 894 species 1658672 1 0 46 2109914 species 1 0 91 Ottowia sp. KADR8-3 Verminephrobacter 119 0 1 1 2 genus 364316 Verminephrobacter eiseniae 118 0 1 species 364317 152 1 0 1 2 genus 201096 Alicycliphilus 0 151 species 179636 1 Alicycliphilus denitrificans 19 0 1 1436289 genus Candidatus Symbiobacter mobilis 1 1436290 species 19 0 Delftia 9 0 635 genus 80865 1 5 2 2613839 no rank 297 0 742013 species 1 0 158 Delftia sp. Cs1-4 0 139 1920191 species 1 Delftia sp. HK171 174 0 1 180282 species Delftia tsuruhatensis Delftia acidovorans 0 155 80866 species 1 genus 28065 1 5 0 1 380 Rhodoferax 54 0 1 81479 species Rhodoferax antarcticus Rhodoferax ferrireducens 1 species 192843 51 0 Rhodoferax saidenbachensis 1484693 species 1 0 65 Rhodoferax koreense 209 0 1 1842727 species Burkholderiaceae 119060 family 81 1 51 0 14312 Ralstonia 48736 genus 5 1 0 23 1198 Ralstonia solanacearum 547 0 1 305 species 141 0 1 species 190721 Ralstonia insidiosa species 105219 1 0 228 Ralstonia mannitolilytica 0 259 329 species 1 Ralstonia pickettii Paraburkholderia 12 1 1822464 genus 2553 0 41 1 148447 species 167 0 Paraburkholderia phymatum Paraburkholderia aromaticivorans 293 0 1 species 2026199 Paraburkholderia phenoliruptrix 1 species 252970 178 0 Paraburkholderia xenovorans 290 0 1 36873 species no rank 2615204 1 0 161 1 species 1926494 161 0 Paraburkholderia sp. SOS3 Paraburkholderia sprentiae 948107 species 1 0 222 Paraburkholderia fungorum 0 321 134537 species 1 Paraburkholderia terrae 1 311230 species 183 0 258 0 1 75105 species Paraburkholderia caribensis Paraburkholderia hospita 1 169430 species 175 0 261302 species 1 0 264 Paraburkholderia phytofirmans 1 9 genus 106589 1512 0 43 Cupriavidus 1 119219 species 114 0 Cupriavidus metallidurans 0 199 species 367825 1 Cupriavidus sp. USMAA1020 0 421 no rank 2640874 2 Cupriavidus sp. USMAA2-4 1 species 876364 229 0 Cupriavidus sp. USMAHM13 192 0 1 species 1389192 1 species 106590 236 0 Cupriavidus necator 68895 species 1 0 197 Cupriavidus basilensis species 82541 1 0 179 Cupriavidus gilardii Cupriavidus pinatubonensis 0 123 species 248026 1 Pandoraea 0 25 804 genus 93217 1 10 Pandoraea faecigallinarum 75 0 1 species 656179 Pandoraea vervacti 1 species 656178 74 0 Pandoraea oxalativorans 70 0 1 species 573737 Pandoraea norimbergensis 0 106 species 93219 1 Pandoraea apista 1 93218 species 71 0 1 445709 species 96 0 Pandoraea thiooxydans Pandoraea pnomenusa species 93220 1 0 103 Pandoraea sputorum 93222 species 1 0 67 0 117 93221 species 1 Pandoraea pulmonicola 8003 348 0 41 1 32008 genus Burkholderia 1 species 41899 254 0 Burkholderia plantarii 423 0 1 28095 species Burkholderia gladioli 111527 species group 7 0 1170 82 0 1 1637831 species Burkholderia sp. MSMB617WGS 262 0 1 57975 species Burkholderia thailandensis 1 342113 species 199 0 Burkholderia oklahomensis Burkholderia sp. MSMB0266 78 0 1 1637837 species Burkholderia sp. MSMB0852 1 1637841 species 101 0 Burkholderia pseudomallei 319 0 1 species 28450 Burkholderia mallei species 13373 1 0 129 4014 0 19 species group 87882 Burkholderia stagnalis 1 species 1503054 139 0 Burkholderia vietnamiensis species 60552 1 0 189 Burkholderia ambifaria 139 0 1 152480 species Burkholderia dolosa 0 137 152500 species 1 1 species 488447 84 0 Burkholderia contaminans [Pseudomonas] mesoacidophila 265293 species 1 0 125 Burkholderia seminalis 1 species 488731 131 0 60550 species 1 0 89 Burkholderia pyrrocinia Burkholderia multivorans 0 261 species 87883 1 Burkholderia cepacia 0 703 species 292 1 1 species 95485 240 0 Burkholderia stabilis Burkholderia diffusa species 488732 1 0 95 1 species 482957 190 0 Burkholderia lata Burkholderia metallica species 488729 1 0 111 0 621 95486 species 1 Burkholderia cenocepacia 1207504 species 1 0 157 Burkholderia pseudomultivorans 413 0 1 101571 species Burkholderia ubonensis Burkholderia latens 94 0 1 species 488446 0 96 species 1503055 1 Burkholderia territorii Burkholderia glumae 0 406 337 species 1 2613784 no rank 11 0 1388 0 78 species 1795874 1 Burkholderia sp. PAMC 28687 Burkholderia sp. Bp5365 0 88 species 1740162 1 Burkholderia sp. KJ006 1 416344 species 100 0 Burkholderia sp. 2002721687 0 90 1468409 species 1 Burkholderia sp. YI23 148 0 1 species 1097668 Burkholderia sp. HB1 0 165 species 1678678 1 Burkholderia sp. RPE67 1 758796 species 158 0 0 111 1740163 species 1 Burkholderia sp. Bp7605 1 640512 species 166 0 Burkholderia sp. CCGE1003 Burkholderia sp. CCGE1001 187 0 1 640510 species Burkholderia sp. PAMC 26561 0 97 1795043 species 1 genus 2571159 1 0 49 412963 species 1 0 49 Paraburkholderia rhizoxinica 137 0 1 genus 1827195 758793 species 1 0 137 Burkholderia sp. RPE64 44013 genus 1 0 5 Polynucleobacter duraquae 5 0 1 1835254 species 23 0 3463 506 family 36 1 Alcaligenaceae 1472344 genus 1 0 2 0 2 species 1472345 1 Basilea psittacipulmonis 68 0 1 genus 1921582 Orrella dioscoreae 68 0 1 1851544 species Castellaniella 128 0 1 2 1 359336 genus Castellaniella defragrans 0 127 species 75697 1 35 0 1 genus 507 Alcaligenes faecalis 0 35 species 511 1 genus 1100891 1 0 1 Paenalcaligenes hominis species 643674 1 0 1 33 0 2 1 3 genus 290425 Advenella Advenella kashmirensis 1 species 310575 13 0 Advenella mimigardefordensis 1 302406 species 18 0 6 1 222 genus 1415 31 0 Achromobacter Achromobacter denitrificans 32002 species 1 0 306 0 161 2626865 no rank 1 Achromobacter sp. AONIH1 species 1758194 1 0 161 0 144 species 217204 1 Achromobacter insolitus species 217203 1 0 186 Achromobacter spanius Achromobacter xylosoxidans 1 85698 species 587 0 1 90243 genus 2 0 Oligella urethralis 2 0 1 species 90245 1731 39 0 17 1 517 genus Bordetella Bordetella pertussis species 520 1 0 96 Bordetella genomosp. 6 1 463024 species 126 0 Bordetella hinzii 0 98 103855 species 1 Bordetella bronchiseptica 222 0 1 species 518 Bordetella genomosp. 13 1 species 463040 139 0 46 0 1 species 521 Bordetella avium 0 38 35814 species 1 Bordetella holmesii Bordetella genomosp. 9 species 1416803 1 0 85 86 0 1 species 1331258 Bordetella pseudohinzii 2630031 no rank 1 0 117 Bordetella sp. H567 species 1697043 1 0 117 Bordetella bronchialis 0 147 species 463025 1 115 0 1 1416806 species Bordetella genomosp. 8 98 0 1 species 519 Bordetella parapertussis 0 93 species 463014 1 Bordetella flabilis Bordetella petrii 0 83 species 94624 1 Bordetella trematum 1 species 123899 103 0 2 1 305976 genus 25 0 1 Pusillimonas 0 24 no rank 2640016 1 0 24 1007105 species 1 Pusillimonas sp. T7-7 2089 0 16 224471 no rank Rhizobacter 296 4 0 1 2 genus 212743 292 0 1 946333 species Rhizobacter gummiphilus Mitsuaria 272 0 4 2 1 65047 genus 268 0 1 no rank 2648776 Mitsuaria sp. 7 268 0 1 1658665 species [Polyangium] brachysporum 413882 species 1 0 197 Thiomonas 167 0 3 1 2 genus 32012 926 species 1 0 164 Thiomonas intermedia 3 0 161 93681 genus 2 1 Roseateles Roseateles depolymerans 1 species 76731 158 0 genus 318147 1 0 90 1 2642959 no rank 90 0 Paucibacter sp. KCTC 42545 1 species 1768242 90 0 Rubrivivax 28067 genus 2 1 0 2 382 Rubrivivax gelatinosus 380 0 1 species 28068 0 5 244 genus 316612 1 2 Methylibium Methylibium petroleiphilum 0 239 species 105560 1 Leptothrix 1 2 genus 88 280 0 13 0 267 34029 species 1 Leptothrix cholodnii 1807140 class 4 0 63 0 63 order 225057 4 4 225058 family 63 0 genus 119977 1 4 0 3 63 Acidithiobacillus 1 species 160808 15 0 Acidithiobacillus ferrivorans 18 0 1 920 species Acidithiobacillus ferrooxidans 27 0 1 species 33059 Acidithiobacillus caldus 5620 0 122 68525 subphylum class 29547 30 0 90 88 0 2 29 1 213849 order Campylobacterales 2 family 2771472 13 0 genus 269260 1 0 5 species 269261 1 0 5 Nitratifractor salsuginis 0 8 265570 genus 1 Sulfurovum lithotrophicum 1 206403 species 8 0 0 60 72294 family 18 5 57665 genus 12 0 Sulfurospirillum halorespirans 2 0 1 194424 species no rank 2618290 2 0 6 Sulfurospirillum sp. UCH001 species 1581011 1 0 4 0 2 1986224 species 1 Sulfurospirillum sp. SL2-1 Sulfurospirillum cavolei 3 0 1 366522 species Sulfurospirillum multivorans 66821 species 1 0 1 10 genus 194 45 0 Campylobacter insulaenigrae 1 260714 species 1 0 Campylobacter fetus 1 196 species 3 0 0 6 2593542 no rank 2 0 3 1660074 species 1 Campylobacter sp. RM8964 Campylobacter sp. RM12175 3 0 1 1660076 species 1 species 824 11 0 Campylobacter gracilis 1 species 522485 5 0 Campylobacter avium Campylobacter curvus 1 species 200 7 0 0 6 201 species 1 Campylobacter lari species 199 1 0 1 Campylobacter concisus Campylobacter hyointestinalis 1 species 198 5 0 0 3 no rank 2321108 3 1 0 1 2321207 no rank Arcobacter sp. L 1 944547 species 1 0 genus 2321187 1 0 1 Arcobacter sp. LPB0137 1 0 1 species 1850254 1 0 1 28196 genus Arcobacter nitrofigilis 0 1 species 28199 1 5 72293 family 8 0 1 843 genus 4 0 Wolinella succinogenes 1 species 844 4 0 4 0 4 209 genus 210 species 1 0 1 Helicobacter pylori 32025 species 1 0 1 Helicobacter hepaticus Helicobacter felis 1 species 214 1 0 0 1 species 1591088 1 Helicobacter himalayensis 0 5 family 2771471 3 2 0 2 genus 202746 0 1 species 39766 1 Sulfurimonas denitrificans Sulfurimonas autotrophica 202747 species 1 0 1 0 3 genus 286130 1 Sulfuricurvum kujiense species 148813 1 0 3 235899 order 1 0 2 2795691 family 1 0 2 1 genus 269258 2 0 no rank 2624044 1 0 2 species 387092 1 0 2 Nitratiruptor sp. SB155-2 Deltaproteobacteria 1 92 class 28221 5530 0 7 0 1 50 order 453227 1 3 Desulfarculales 453228 family 2 0 49 Desulfarculus genus 453229 1 2 0 1 49 0 48 453230 species 1 Desulfarculus baarsii 61 0 5 order 213462 213468 family 3 0 30 60892 genus 1 0 12 12 0 1 60893 species Desulfobacca acetoxidans 1 2357 genus 7 0 1 species 2358 7 0 Desulfomonile tiedjei 0 11 43773 genus 1 11 0 1 species 316277 Syntrophus aciditrophicus 31 0 2 213465 family 31 0 3 2 1 29526 genus Syntrophobacter 28 0 1 species 119484 Syntrophobacter fumaroxidans Desulfuromonadales 677 0 2 1 22 order 69541 Desulfuromonadaceae 216 1 0 1 8 family 213421 Desulfuromonas 890 genus 3 1 0 1 132 1 1603606 species 56 0 Desulfuromonas soudanensis 75 0 1 2614637 no rank 1 species 1823759 75 0 Desulfuromonas sp. DDH964 genus 18 4 0 83 15 0 1 2620299 no rank 1 species 1842532 15 0 Pelobacter sp. SFB93 Pelobacter carbinolicus 1 species 19 14 0 1 species 29542 21 0 Pelobacter acetylenicus 29543 species 1 0 33 Pelobacter propionicus 459 0 2 13 1 213422 family Geobacteraceae 1 11 genus 28231 434 0 6 Geobacter 60 0 1 species 225194 Geobacter bemidjiensis Geobacter daltonii 1 species 1203471 12 0 species 1340425 1 0 51 Geobacter anodireducens Geobacter sulfurreducens 45 0 1 species 35554 1 species 351604 40 0 Geobacter uraniireducens Geobacter pickeringii 30 0 1 345632 species 28232 species 1 0 32 Geobacter metallireducens 2 2627627 no rank 134 0 Geobacter sp. M18 94 0 1 species 443143 Geobacter sp. M21 0 40 443144 species 1 Geobacter lovleyi 24 0 1 species 313985 23 0 1 genus 392332 23 0 1 483547 species Geoalkalibacter subterraneus 213118 order 9 0 124 0 50 family 213121 4 11 0 1 genus 893 Desulfobulbus sp. ORNL species 1986146 1 0 11 1 0 1 109168 genus 0 1 84980 species 1 Desulfotalea psychrophila 0 5 53318 genus 1 1 species 65555 5 0 Desulfocapsa sulfexigens 0 33 genus 427922 1 0 33 species 427923 1 Desulfurivibrio alkaliphilus 0 74 family 213119 5 1 genus 218207 32 0 Desulfatibacillum alkenivorans 0 32 259354 species 1 1 2295 genus 3 0 1 species 2296 3 0 Desulfobacterium autotrophicum 33 0 2 genus 896 Desulfococcus oleovorans 16 0 1 181663 species Desulfococcus multivorans 897 species 1 0 17 0 6 28222 genus 1 0 6 28223 species 1 Desulfobacula toluolica 503 0 8 20 1 213115 order Desulfovibrionales 213116 family 2 0 47 47 0 2 genus 898 15 0 1 species 132132 Desulfomicrobium orale Desulfomicrobium baculatum species 899 1 0 32 15 0 1 213117 family 15 0 1 45662 genus Desulfohalobium retbaense 0 15 species 45663 1 433 4 0 16 1 194924 family Desulfovibrionaceae 1 2582840 genus 35 0 Desulfovibrio africanus 0 35 873 species 1 2035811 genus 3 0 104 0 4 57320 species 1 Pseudodesulfovibrio profundus Pseudodesulfovibrio indicus 0 54 species 1716143 1 Pseudodesulfovibrio aespoeensis 1 182210 species 46 0 0 5 2794998 genus 1 Desulfovibrio salexigens 0 5 880 species 1 9 1 872 genus 283 3 0 Desulfovibrio Desulfovibrio vulgaris 71 0 1 881 species 62 0 1 876 species Desulfovibrio desulfuricans 2593640 no rank 1 0 5 species 631220 1 0 5 Desulfovibrio sp. G11 0 28 species 901 1 Desulfovibrio piger Candidatus Desulfovibrio trichonymphae 1725232 species 1 0 4 species 44742 1 0 24 Desulfovibrio fairfieldensis species 58180 1 0 19 Desulfovibrio alaskensis 67 0 1 species 184917 Desulfovibrio magneticus genus 41707 1 0 2 1 species 29546 2 0 Lawsonia intracellularis 2 0 1 213113 order 0 2 family 117942 1 0 2 33001 genus 1 1 33002 species 2 0 Desulfurella acetivorans order 29 1 31 36 0 4106 Myxococcales 22 suborder 80811 2356 0 1 7 family 39 623 16 0 Archangiaceae 151 0 1 genus 42 Cystobacter fuscus 151 0 1 43 species 2 1 47 genus 206 0 1 Archangium 1 species 48 205 0 Archangium gephyra 130 0 1 2 1 40 genus Stigmatella 129 0 1 41 species Stigmatella aurantiaca 120 0 1 44 genus 120 0 1 species 83453 Melittangium boletus 111 0 1 family 1524213 111 0 1 1524214 genus 0 111 1391653 species 1 Vulgatibacter incomptus 1 5 family 1524215 584 3 0 Anaeromyxobacteraceae Anaeromyxobacter genus 161492 1 4 0 5 581 1 species 161493 258 0 Anaeromyxobacter dehalogenans 2 2620896 no rank 318 0 Anaeromyxobacter sp. K species 447217 1 0 166 152 0 1 404589 species Anaeromyxobacter sp. Fw109-5 Myxococcaceae 1038 7 0 1 9 family 31 Corallococcus 5 0 335 83461 genus 3 1 184914 species 1 0 172 Corallococcus coralloides Myxococcus macrosporus 35 species 1 0 158 Myxococcus 696 0 13 1 5 genus 32 0 135 1297742 species 1 Myxococcus hansupus 0 133 34 species 1 Myxococcus xanthus 1 33 species 299 0 Myxococcus fulvus 83455 species 1 0 116 Myxococcus stipitatus 0 266 224462 suborder 3 Kofleriaceae family 224464 1 3 1 0 266 265 2 0 1 2 genus 162027 Haliangium 263 0 1 80816 species Haliangium ochraceum 1448 0 5 suborder 80812 1 4 family 49 1194 3 0 Polyangiaceae Sorangium genus 39643 1 2 0 1 971 1 56 species 970 0 Sorangium cellulosum 1 50 genus 220 0 1 species 52 220 0 Chondromyces crocatus 254 0 1 1055686 family 254 0 1 genus 1055688 Sandaracinus amylolyticus 254 0 1 species 927083 Gammaproteobacteria class 1236 1 642 0 27 21058 2 no rank 33811 88 0 1 species 1248727 71 0 endosymbiont of unidentified scaly snail isolate Monju gamma proteobacterium HdN1 17 0 1 species 83406 130 1 0 3 1 1775403 order Nevskiales 2 family 2689614 129 0 129 0 3 2 1 469322 genus Steroidobacter Steroidobacter denitrificans 1 species 465721 126 0 0 43 118969 order 8 2 family 118968 14 0 776 genus 1 0 10 Coxiella burnetii 10 0 1 species 777 1 134284 no rank 4 0 species 1592897 1 0 4 Coxiella-like endosymbiont family 444 6 0 29 445 genus 6 0 29 1 96230 species 3 0 Legionella fallonii Legionella pneumophila 1 446 species 10 0 Legionella spiritensis 0 3 452 species 1 species 66969 1 0 9 Legionella waltersii Legionella oakridgensis 29423 species 1 0 2 2 0 1 species 45067 Legionella lansingensis Aeromonadales 723 3 0 25 1 135624 order 720 7 0 24 1 84642 family Aeromonadaceae genus 43947 1 0 5 5 0 1 species 43948 Tolumonas auensis 0 2 225143 genus 1 2 0 1 1416627 species Oceanisphaera profunda Aeromonas genus 642 1 18 46 0 599 644 species 1 0 152 Aeromonas hydrophila 948519 species 1 0 28 Aeromonas rivipollensis Aeromonas media 32 0 1 species 651 0 14 species 648 1 Aeromonas caviae 45 0 1 species 645 Aeromonas salmonicida 155 0 8 257493 no rank 0 10 species 1636607 1 Aeromonas sp. ASNIH2 15 0 1 species 1636608 Aeromonas sp. ASNIH3 Aeromonas sp. CA23 0 30 2033032 species 1 1 1920107 species 10 0 Aeromonas sp. ASNIH7 Aeromonas sp. CU5 0 17 2033033 species 1 Aeromonas sp. ASNIH1 species 1636606 1 0 10 42 0 1 1636609 species Aeromonas sp. ASNIH4 1 1758179 species 21 0 Aeromonas sp. ASNIH5 Aeromonas veronii 1 species 654 61 0 21 0 1 196024 species Aeromonas dhakensis Aeromonas schubertii 652 species 1 0 18 Aeromonas aquatica 0 27 species 558964 1 genus 129577 1 0 53 53 0 1 no rank 2636315 Oceanimonas sp. GK1 1 species 511062 53 0 Zobellella 2 1 347533 genus 54 1 0 347534 species 1 0 53 Zobellella denitrificans Pseudomonadales 72274 order 108 1 0 41 6985 1 84 family 135621 6866 0 37 Pseudomonadaceae Pseudomonas 0 223 6564 genus 286 1 80 species group 136841 6 0 1049 Pseudomonas mendocina species 300 1 0 203 1 1232139 species subgroup 83 0 Pseudomonas furukawaii 0 83 species 1149133 1 1 species 287 421 0 Pseudomonas aeruginosa species 53408 1 0 182 Pseudomonas citronellolis Pseudomonas alcaligenes 43263 species 1 0 70 species 53412 1 0 90 Pseudomonas resinovorans Pseudomonas versuta species 1788301 1 0 9 Pseudomonas knackmussii species 65741 1 0 130 Pseudomonas cremoricolorata 157783 species 1 0 36 2 species group 136846 483 0 Pseudomonas balearica 0 75 74829 species 1 408 0 1 578833 species subgroup Pseudomonas stutzeri 316 species 1 0 408 1 species 1853130 37 0 Pseudomonas silesiensis Pseudomonas alkylphenolica 0 46 237609 species 1 Pseudomonas psychrotolerans 0 83 species 237610 1 578 0 8 species group 136849 2 251698 species subgroup 119 0 Pseudomonas savastanoi 0 51 species 29438 1 1 species 47877 68 0 Pseudomonas amygdali 0 28 species 36746 1 Pseudomonas cichorii 0 42 46257 species 1 Pseudomonas avellanae 0 77 251701 species 1 Pseudomonas syringae group genomosp. 3 Pseudomonas viridiflava 33069 species 1 0 66 14 0 1 2775504 no rank Pseudomonas sp. Lz4W 14 0 1 species 1206777 232 0 1 251695 species subgroup 0 232 317 species 1 Pseudomonas syringae 69 0 1 species 101564 Pseudomonas alcaliphila 244566 species 1 0 28 Pseudomonas lurida 1276 0 30 196821 no rank 0 41 2083052 species 1 Pseudomonas sp. SWI36 35 0 1 species 2069256 Pseudomonas sp. XWY-1 64 0 1 species 1856685 Pseudomonas sp. TCU-HL1 species 1534110 1 0 60 Pseudomonas sp. DR 5-09 54 0 1 1649877 species Pseudomonas sp. CCOS 191 Pseudomonas sp. URMO17WK12:I11 0 61 1283291 species 1 47 0 1 69328 species Pseudomonas sp. VLB120 Pseudomonas sp. PONIH3 species 1636610 1 0 48 Pseudomonas sp. MYb193 1 1827300 species 28 0 51 0 1 1338689 species Pseudomonas sp. JY-Q Pseudomonas sp. FDAARGOS_380 species 2018067 1 0 27 2083051 species 1 0 58 Pseudomonas sp. SWI6 Pseudomonas sp. HLS-6 species 2049589 1 0 14 28 0 1 1259844 species Pseudomonas sp. FGI182 Pseudomonas sp. St29 1500687 species 1 0 56 Pseudomonas sp. TKP 1 1415630 species 24 0 66 0 1 species 1611770 Pseudomonas sp. MRSN12121 56 0 1 2083053 species Pseudomonas sp. SWI44 Pseudomonas sp. ATCC 13867 species 1294143 1 0 88 Pseudomonas sp. GR 6-02 species 1659194 1 0 23 1207075 species 1 0 28 Pseudomonas sp. UW4 0 44 species 1500686 1 Pseudomonas sp. Os17 Pseudomonas sp. LH1G9 0 46 species 2083055 1 51 0 1 2067572 species Pseudomonas sp. NC02 Pseudomonas sp. LPH1 35 0 1 species 1898684 1 species 1931241 36 0 Pseudomonas sp. S-6-2 Pseudomonas sp. LG1D9 1 species 2083054 15 0 1 species 1981174 8 0 Pseudomonas sp. M30-35 Pseudomonas sp. CC6-YY-74 1930532 species 1 0 53 0 31 1028989 species 1 Pseudomonas sp. StFLB209 334 0 2 species group 136842 1 296 species 42 0 Pseudomonas fragi 587753 species 1 0 292 Pseudomonas chlororaphis 136843 species group 9 0 829 Pseudomonas poae 0 26 species 200451 1 Pseudomonas protegens species 380021 1 0 65 Pseudomonas azotoformans 1 species 47878 69 0 Pseudomonas veronii species 76761 1 0 53 Pseudomonas orientalis species 76758 1 0 35 47879 species 1 0 49 Pseudomonas corrugata Pseudomonas mandelii 0 47 75612 species 1 1 200450 species 44 0 Pseudomonas trivialis 1 species 294 441 0 Pseudomonas fluorescens 0 913 species group 136845 6 1 78327 species 95 0 Pseudomonas mosselii Pseudomonas fulva 65 0 1 species 47880 Pseudomonas putida 0 487 303 species 1 Pseudomonas oryzihabitans species 47885 1 0 68 Pseudomonas plecoglossicida 42 0 1 70775 species 156 0 1 species 76759 Pseudomonas monteilii species 104087 1 0 68 Pseudomonas frederiksbergensis species 312306 1 0 53 Pseudomonas entomophila 1 219572 species 43 0 Pseudomonas antarctica Pseudomonas koreensis 68 0 1 198620 species species 1583341 1 0 50 Pseudomonas cerasi Pseudomonas parafulva 65 0 1 species 157782 1 930166 species 58 0 Pseudomonas brassicacearum Pseudomonas rhizosphaerae 36 0 1 216142 species 3 subfamily 351 265 0 genus 352 1 3 0 1 265 Azotobacter Azotobacter chroococcum 1 species 353 143 0 Azotobacter vinelandii species 354 1 0 121 78 0 23 family 468 469 genus 16 0 59 1 40214 species 3 0 Acinetobacter johnsonii species 29430 1 0 1 Acinetobacter haemolyticus 1 species 40215 8 0 Acinetobacter junii 1 species 202950 6 0 0 6 62977 strain 1 Acinetobacter sp. ADP1 0 1 species 108981 1 Acinetobacter schindleri 3 0 1 1789224 species Acinetobacter larvae 10 0 3 196816 no rank Acinetobacter sp. LoGeW2-3 1 species 1808001 2 0 0 1 species 1646498 1 Acinetobacter sp. TTH0-4 Acinetobacter sp. NCu2D-2 species 1608473 1 0 7 Acinetobacter indicus 0 9 756892 species 1 Acinetobacter soli 1 0 1 487316 species Acinetobacter oleivorans 1 0 1 1148157 species 16 0 4 909768 species group 1 471 species 4 0 Acinetobacter calcoaceticus Acinetobacter baumannii 5 0 1 470 species Acinetobacter pittii 1 48296 species 6 0 Acinetobacter lactucae 1785128 species 1 0 1 13 0 4 475 genus Moraxella ovis 2 0 1 species 29433 Moraxella bovoculi species 386891 1 0 3 Moraxella osloensis 6 0 1 species 34062 Moraxella catarrhalis 1 480 species 2 0 3 genus 497 6 0 1 196806 no rank 2 0 2 0 1 571800 species Psychrobacter sp. G Psychrobacter urativorans 0 3 45610 species 1 1 330922 species 1 0 Psychrobacter cryohalolentis 51 1 135614 order 4924 0 35 Xanthomonadales 12 1 1775411 family 1247 11 0 Rhodanobacteraceae Rhodanobacter 1 2 genus 75309 178 3 0 175 0 1 666685 species Rhodanobacter denitrificans Luteibacter 242605 genus 2 1 3 0 117 114 0 1 species 242606 Luteibacter rhizovicinus Dyella 6 0 603 genus 231454 1 4 1379159 species 1 0 205 Dyella jiangningensis 181 0 1 species 231455 Dyella japonica species 445710 1 0 211 Dyella thiooxydans 0 196 323413 genus 1 Dokdonella koreensis 323415 species 1 0 196 58 0 1 2233801 genus species 2021234 1 0 58 Xanthomonadales bacterium D13 70411 genus 1 0 84 Frateuria aurantia 0 84 81475 species 1 Xanthomonadaceae 38 1 32033 family 3642 0 23 Luteimonas 83614 genus 2 1 2 0 119 117 0 1 2006110 species Luteimonas sp. 100111 Xanthomonas 338 genus 17 1 78 0 1310 1 442694 species 54 0 Xanthomonas perforans Xanthomonas sacchari 109 0 1 species 56458 Xanthomonas vesicatoria 0 55 56460 species 1 Xanthomonas campestris 1 339 species 182 0 Xanthomonas albilineans 0 45 species 29447 1 Xanthomonas alfalfae 366650 species 1 0 26 189 0 1 species 343 Xanthomonas translucens 2 species group 643453 207 0 62 0 1 366648 species Xanthomonas fuscans Xanthomonas citri 145 0 1 346 species species 456327 1 0 32 Xanthomonas euvesicatoria Xanthomonas axonopodis 1 species 53413 39 0 48664 species 1 0 37 Xanthomonas fragariae Xanthomonas vasicola 45 0 1 species 56459 Xanthomonas oryzae species 347 1 0 109 Xanthomonas hortorum 56454 species 1 0 63 Xanthomonas phaseoli 0 40 1985254 species 1 Pseudoxanthomonas 83618 genus 3 1 4 0 397 79 0 1 species 415229 Pseudoxanthomonas spadix 314722 species 1 0 314 Pseudoxanthomonas suwonensis genus 2370 1 0 12 Xylella fastidiosa species 2371 1 0 12 1118 0 27 1 9 genus 40323 Stenotrophomonas 0 502 995085 species group 1 1 species 40324 502 0 Stenotrophomonas maltophilia Stenotrophomonas acidaminiphila 0 158 species 128780 1 Stenotrophomonas rhizophila 0 81 216778 species 1 52 0 1 83617 species Stenotrophomonas nitritireducens 298 0 4 196198 no rank Stenotrophomonas sp. KCTC 12332 0 50 1793721 species 1 1 1904944 species 86 0 Stenotrophomonas sp. LM091 1827305 species 1 0 75 Stenotrophomonas sp. MYb57 0 87 species 2005046 1 Stenotrophomonas sp. WZN-1 0 13 663 genus 68 1 5 Lysobacter Lysobacter enzymogenes 69 species 1 0 165 1 species 262324 158 0 Lysobacter gummosus Lysobacter antibioticus 1 species 84531 148 0 0 179 435897 species 1 Lysobacter capsici 135623 order 30 1 0 1 195 Vibrionales 0 194 641 family 29 511678 genus 2 0 5 3 0 1 species 668 Aliivibrio fischeri species 80852 1 0 2 Aliivibrio wodanis 15 0 2 genus 657 Photobacterium damselae 0 2 38293 species 1 species 1295392 1 0 13 Photobacterium gaetbulicola 2042066 genus 1 0 1 Paraphotobacterium marinum 1 1755811 species 1 0 11 0 1 246861 genus Grimontia hollisae 11 0 1 species 673 162 0 1 23 1 662 genus Vibrio 1 1891919 species group 5 0 5 0 1 species 29498 Vibrio tubiashii 0 1 52443 species 1 Vibrio tapetis 1 45658 species 3 0 Vibrio scophthalmi 1 species 666 21 0 Vibrio cholerae 28173 species 1 0 1 Vibrio nigripulchritudo Vibrio fluvialis 0 2 676 species 1 0 9 no rank 2614977 1 Vibrio sp. EJY3 1116375 species 1 0 9 Vibrio anguillarum 8 0 1 55601 species 553239 species 1 0 1 Vibrio breoganii 5 0 1 species 2025808 Vibrio qinghaiensis 212663 species 1 0 3 Vibrio tasmaniensis 78 0 8 species group 717610 species 691 1 0 2 Vibrio natriegens Vibrio jasicida 1 766224 species 7 0 1 696485 species 10 0 Vibrio owensii 190895 species 1 0 2 Vibrio rotiferianus 0 19 species 670 1 Vibrio parahaemolyticus 0 13 species 669 1 Vibrio harveyi Vibrio alginolyticus 663 species 1 0 5 Vibrio campbellii species 680 1 0 20 2 0 1 29494 species Vibrio furnissii 1 species 672 15 0 Vibrio vulnificus Vibrio coralliilyticus 0 7 species 190893 1 0 51 order 135625 13 13 family 712 51 0 1 2094023 genus 1 0 1 0 1 species 738 Glaesserella parasuis 0 4 genus 214906 1 Histophilus somni 4 0 1 species 731 1 697331 genus 11 0 1 157673 species 11 0 [Mannheimia] succiniciproducens 3 0 2 745 genus Pasteurella dagmatis 2 0 1 754 species 0 1 747 species 1 Pasteurella multocida 7 0 2 724 genus 0 5 727 species 1 Haemophilus influenzae 2 0 1 249188 species Haemophilus pittmaniae 75984 genus 1 0 1 0 1 2645054 no rank 1 Mannheimia sp. USDA-ARS-USMARC-1261 1 0 1 species 1432056 4 0 1 genus 416916 Aggregatibacter actinomycetemcomitans 4 0 1 species 714 16 0 3 genus 713 Actinobacillus pleuropneumoniae 0 6 715 species 1 7 0 1 716 species Actinobacillus suis Actinobacillus succinogenes 1 67854 species 3 0 4 0 1 genus 155493 Gallibacterium anatis 750 species 1 0 4 1 39 order 135613 1465 9 0 Chromatiales family 449719 1 2 2 0 32 Granulosicoccaceae 0 30 437504 genus 1 species 437505 1 0 30 Granulosicoccus antarcticus 1 2 family 1676141 54 0 1 Wenzhouxiangellaceae 1 genus 1676142 53 0 53 0 1 1579979 species Wenzhouxiangella marina 0 82 451214 no rank 1 0 82 1273155 genus 1 Thiohalobacter thiocyanaticus species 585455 1 0 82 30 0 1 1738654 family 30 0 1 genus 1738655 Woeseia oceani species 1548547 1 0 30 16 1 1046 family 602 0 2 Chromatiaceae 0 3 133 genus 85076 1 2 Marichromatium 0 130 species 37487 1 Marichromatium purpuratum 49 0 1 82569 no rank 0 49 1978339 species 1 Chromatiaceae bacterium 2141T.STBD.0c.01a 1 0 9 genus 1980513 1 2 Candidatus Nitrosoglobus Candidatus Nitrosoglobus terrae 8 0 1 species 1630141 Thiocystis 2 1 13724 genus 97 5 0 92 0 1 73141 species Thiocystis violascens genus 156885 1 2 0 3 93 Thioflavicoccus 1 species 80679 90 0 Thioflavicoccus mobilis Thiodictyon 1 2 genus 53392 123 0 4 Candidatus Thiodictyon syntrophicum 119 0 1 species 1166950 genus 85072 1 0 85 species 1049 1 0 85 Allochromatium vinosum 11 0 3 genus 1227 Nitrosococcus halophilus species 133539 1 0 4 Nitrosococcus watsonii 0 4 473531 species 1 Nitrosococcus oceani 0 3 species 1229 1 0 56 255526 family 2 0 56 genus 109262 2 0 45 2636392 no rank 1 1860122 species 1 0 45 Halothiobacillus sp. LS2 Halothiobacillus neapolitanus 927 species 1 0 11 Ectothiorhodospiraceae 1 14 family 72276 600 3 0 genus 133193 1 0 34 Alkalilimnicola ehrlichii species 351052 1 0 34 0 40 1051 genus 1 40 0 1 no rank 2684909 0 40 1442136 species 1 Ectothiorhodospira sp. BSL-9 0 44 1765964 genus 1 44 0 1 species 160660 Acidihalobacter prosperus 360 0 6 6 1 106633 genus Thioalkalivibrio 82 0 1 species 108010 Thioalkalivibrio paradoxus 69 0 1 species 186931 Thioalkalivibrio nitratireducens Thioalkalivibrio sulfidiphilus 80 0 1 1033854 species Thioalkalivibrio versutus 0 53 106634 species 1 1 2621013 no rank 70 0 Thioalkalivibrio sp. K90mix 0 70 396595 species 1 65 1 0 3 1 1335745 genus Spiribacter Spiribacter salinus 20 0 1 1335746 species 44 0 1 species 1335757 Spiribacter curvatus 1 genus 85108 54 0 species 1053 1 0 54 Halorhodospira halophila Methylococcales 135618 order 10 1 0 1 219 218 2 0 1 9 family 403 Methylococcaceae 1 genus 762296 7 0 1704499 species 1 0 7 Methylovulum psychrotolerans 413 genus 1 0 54 Methylococcus capsulatus 0 54 species 414 1 5 1 416 genus 140 3 0 Methylomonas 1 species 1538553 21 0 Methylomonas denitrificans 0 48 2608980 no rank 1 Methylomonas sp. DH-1 0 48 species 1727196 1 species 702114 1 0 53 Methylomonas koyamae 0 15 species 421 1 Methylomonas methanica genus 39773 1 0 15 Methylomicrobium alcaliphilum 0 15 species 271065 1 29 0 13 order 72273 135617 family 1 0 3 3 0 1 genus 40751 Thioploca ingrica 0 3 40754 species 1 17 0 7 family 135616 0 1 genus 28884 1 1 39765 species 1 0 Hydrogenovibrio crunogenus 1237 genus 1 0 1 Piscirickettsia salmonis 0 1 species 1238 1 40222 genus 1 0 8 0 8 754476 species 1 Methylophaga nitratireducenticrescens 3 0 3 34067 genus Cycloclasticus zancles 1329899 species 1 0 1 2 no rank 2621467 2 0 Cycloclasticus sp. P1 1 species 385025 1 0 1 728003 species 1 0 Cycloclasticus sp. PY97N genus 933 1 0 4 92245 species 1 0 4 Thiomicrospira aerophila 5 34064 family 9 0 9 0 5 genus 262 1 549298 species 3 0 Francisella halioticida species 263 1 0 1 Francisella tularensis 0 2 1542390 species 1 Francisella sp. CA97-1460 Francisella persica 954 species 1 0 1 28110 species 1 0 2 Francisella philomiragia 91347 order 193 1 0 18 3921 Enterobacterales 0 17 no rank 451511 1 0 17 genus 702 1 0 17 703 species 1 Plesiomonas shigelloides Hafniaceae 1903412 family 12 1 3 0 232 1 genus 82982 5 0 5 0 1 82983 species Obesumbacterium proteus 2 568 genus 27 0 2621980 no rank 1 0 5 1 species 1848580 5 0 Hafnia sp. CBA7124 22 0 1 569 species Hafnia alvei 197 6 0 8 1 635 genus Edwardsiella 23 0 1 species 67780 Edwardsiella ictaluri 42 0 2 2676541 no rank Edwardsiella sp. EA181011 14 0 1 1578828 species Edwardsiella sp. LADL05-105 1 species 1650654 28 0 Edwardsiella anguillarum 28 0 1 1821960 species Edwardsiella piscicida 33 0 1 1263550 species species 93378 1 0 21 Edwardsiella hoshinae 44 0 1 636 species Edwardsiella tarda 1903409 family 21 0 356 0 2 genus 51228 1 Wigglesworthia glossinidia 2 0 1 species 51229 1 10 genus 53335 209 4 0 Pantoea 0 62 no rank 2630326 3 Pantoea sp. PSNIH2 0 23 1484157 species 1 Pantoea sp. PSNIH1 1484158 species 1 0 21 Pantoea sp. At-9b 0 18 species 592316 1 0 38 470934 species 1 Pantoea vagans species 1891675 1 0 6 Pantoea alhagi Pantoea rwandensis 0 32 1076550 species 1 species 553 1 0 19 Pantoea ananatis 1 66269 species 17 0 Pantoea stewartii 1 species group 1654067 31 0 Pantoea agglomerans 1 species 549 31 0 70 0 1 7 1 551 genus Erwinia 14 0 1 species 182337 Erwinia billingiae Erwinia amylovora 552 species 1 0 11 12 0 1 species 338565 Erwinia tasmaniensis 1 species 1619313 16 0 Erwinia gerundensis 0 6 79967 species 1 Erwinia pyrifoliae 10 0 1 no rank 2622719 Erwinia sp. Ejp617 species 215689 1 0 10 2 0 1 32199 genus Buchnera aphidicola 0 2 9 species 1 73 0 2 genus 2100764 species 665913 1 0 37 Pantoea calida Pantoea gaviniae 36 0 1 665914 species Pectobacteriaceae 336 1 0 1 17 family 1903410 genus 122277 1 6 0 3 79 Pectobacterium 1 species 2042057 13 0 Pectobacterium polaris Pectobacterium carotovorum 1 554 species 32 0 Pectobacterium wasabiae species 55208 1 0 4 0 3 species 1905730 1 Pectobacterium parmentieri Pectobacterium atrosepticum 24 0 1 species 29471 0 56 84565 genus 3 Sodalis praecaptivus 24 0 1 1239307 species Sodalis glossinidius 1 species 63612 8 0 1 species 1486991 24 0 Candidatus Sodalis pierantonius 71655 genus 1 0 25 Brenneria goodwinii 25 0 1 1109412 species Dickeya 1 6 genus 204037 175 0 3 Dickeya dadantii 1 204038 species 30 0 Dickeya solani 1 species 1089444 51 0 20 0 1 204042 species Dickeya zeae 0 27 204039 species 1 Dickeya dianthicola 44 0 1 1778540 species Dickeya fangzhongdai 62 0 9 1903414 family 3 29487 genus 23 0 Photorhabdus temperata 0 5 574560 species 1 Photorhabdus asymbiotica 0 16 species 291112 1 0 2 29488 species 1 Photorhabdus luminescens 4 626 genus 16 0 Xenorhabdus poinarii 0 2 species 40577 1 Xenorhabdus nematophila species 628 1 0 1 7 0 1 40576 species Xenorhabdus bovienii Xenorhabdus doucetiae 1 species 351671 6 0 4 0 1 583 genus 0 4 585 species 1 Proteus vulgaris 1 genus 581 19 0 Morganella morganii 0 19 582 species 1 2 family 1903416 4 0 Pragia 0 1 4 genus 82984 1 2 Pragia fontium 3 0 1 82985 species Yersiniaceae 975 0 1 1 36 family 1903411 Yersinia 0 7 103 629 genus 13 1 Yersinia frederiksenii 0 3 29484 species 1 no rank 2653513 1 0 8 Yersinia sp. FDAARGOS_228 species 1839800 1 0 8 Yersinia aldovae 5 0 1 29483 species 3 species group 1649845 15 0 Yersinia pestis 5 0 1 species 632 species 367190 1 0 3 Yersinia similis Yersinia pseudotuberculosis 1 species 633 7 0 Yersinia enterocolitica species 630 1 0 19 Yersinia aleksiciae species 263819 1 0 10 Yersinia kristensenii species 28152 1 0 9 1 29486 species 13 0 Yersinia ruckeri Yersinia rohdei 0 6 species 29485 1 Yersinia intermedia 0 8 631 species 1 0 15 929812 genus 1 929813 species 1 0 15 Gibbsiella quercinecans Serratia 814 0 32 16 1 613 genus 1 species 82996 62 0 Serratia plymuthica species 615 1 0 258 Serratia marcescens Serratia fonticola 47917 species 1 0 26 0 55 species 61651 1 Serratia ficaria 28151 species 1 0 14 Serratia proteamaculans Serratia liquefaciens 614 species 1 0 15 8 2647522 no rank 309 0 species 1327989 1 0 48 Serratia sp. FS14 species 671990 1 0 47 Serratia sp. FGI94 104623 species 1 0 6 Serratia sp. ATCC 39006 Serratia sp. SSNIH1 44 0 1 1758196 species 1 species 768493 31 0 Serratia sp. AS13 species 768490 1 0 31 Serratia sp. AS12 Serratia sp. SCBI 1 488142 species 49 0 Serratia sp. MYb239 53 0 1 2033438 species 1 61652 species 43 0 Serratia rubidaea 41 1 0 4 1 34037 genus Rahnella 2 no rank 2635087 29 0 11 0 1 741091 species Rahnella sp. Y9602 0 18 species 1805933 1 Rouxiella sp. ERMR1:05 34038 species 1 0 11 Rahnella aquatilis 0 1 genus 1745211 1 Chania multitudinisentens 1 1639108 species 1 0 0 13 1921 family 543 1 94 Enterobacteriaceae 1330547 genus 4 0 59 Kosakonia oryzae 0 9 497725 species 1 1 species 208223 9 0 Kosakonia cowanii 1 species 283686 17 0 Kosakonia radicincitans Kosakonia sacchari 1158459 species 1 0 24 0 2 12 620 genus 4 1 Shigella 6 0 1 622 species Shigella dysenteriae 2629414 no rank 1 0 2 0 2 1813821 species 1 Shigella sp. PAMC 28760 1 623 species 2 0 Shigella flexneri 10 1 570 genus 550 0 19 Klebsiella Klebsiella michiganensis 1134687 species 1 0 46 571 species 1 0 104 Klebsiella oxytoca Klebsiella quasipneumoniae 1 1463165 species 34 0 Klebsiella variicola 1 species 244366 71 0 0 33 species 548 1 Klebsiella aerogenes Klebsiella pneumoniae 159 0 1 573 species 0 23 2026240 species 1 Klebsiella quasivariicola no rank 2608929 2 0 61 0 18 1934254 species 1 Klebsiella sp. M5al 1 1905288 species 43 0 Klebsiella sp. LTGPAF-6F 158483 genus 2 1 1 0 42 Cedecea Cedecea neteri 1 species 158822 41 0 160 8 0 1 8 genus 413496 Cronobacter Cronobacter dublinensis 19 0 1 413497 species species 1163710 1 0 16 Cronobacter condimenti Cronobacter sakazakii 0 28 species 28141 1 Cronobacter universalis 1 species 535744 20 0 Cronobacter malonaticus 413503 species 1 0 23 Cronobacter muytjensii 16 0 1 413501 species Cronobacter turicensis 0 30 413502 species 1 0 30 375 547 genus 22 1 Enterobacter 0 96 no rank 2608935 9 Enterobacter sp. HK169 0 7 species 1868135 1 Enterobacter sp. E20 species 1560339 1 0 8 1166130 species 1 0 16 Enterobacter sp. R4-368 0 5 1692238 species 1 Enterobacter sp. FY-07 1 1827481 species 5 0 Enterobacter sp. ODB01 1 species 1914861 25 0 Enterobacter sp. SA187 Enterobacter sp. 638 5 0 1 species 399742 0 7 1977566 species 1 Enterobacter sp. Crenshaw Enterobacter sp. CRENT-193 1 2051905 species 18 0 0 249 species group 354276 12 61645 species 1 0 29 Enterobacter asburiae Enterobacter kobei 3 0 1 208224 species 0 47 no rank 2757714 3 2077137 species 1 0 13 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 Enterobacter cloacae complex bacterium species 2027919 1 0 24 Enterobacter cloacae complex sp. ECNIH7 0 10 species 1915310 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 1 1812935 species 6 0 Enterobacter cloacae 1 550 species 96 0 42 0 29 3 1 158836 species Enterobacter hormaechei subspecies 1812934 1 0 8 Enterobacter cloacae complex 'Hoffmann cluster III' Enterobacter xiangfangensis 5 0 1 subspecies 1296536 Enterobacter ludwigii species 299767 1 0 17 9 0 1 species 69218 Enterobacter cancerogenus 72 0 5 36866 no rank Enterobacteriaceae bacterium ENNIH1 0 14 species 2066051 1 Enterobacteriaceae bacterium ENNIH2 1 1920109 species 12 0 891974 species 1 0 24 Plautia stali symbiont 0 14 species 693444 1 Enterobacteriaceae bacterium strain FGI 57 Enterobacteriaceae bacterium ENNIH3 1920128 species 1 0 8 Escherichia 2 0 118 561 genus 5 1 4 0 1 564 species Escherichia fergusonii 562 species 1 0 93 Escherichia coli Escherichia albertii 0 13 208962 species 1 Escherichia marmotae 0 6 1499973 species 1 genus 1330546 2 0 94 Pluralibacter gergoviae 0 64 61647 species 1 [Enterobacter] lignolyticus 1 1334193 species 30 0 0 9 169 genus 544 1 14 Citrobacter 7 species group 1344959 90 0 Citrobacter freundii 1 546 species 34 0 Citrobacter freundii complex sp. CFNIH9 1 2077149 species 6 0 species 2077147 1 0 8 Citrobacter freundii complex sp. CFNIH3 Citrobacter freundii complex sp. CFNIH2 10 0 1 species 2066049 0 7 species 2077148 1 Citrobacter freundii complex sp. CFNIH4 18 0 1 57706 species Citrobacter braakii Citrobacter werkmanii 0 7 species 67827 1 1 species 545 15 0 Citrobacter koseri 12 0 2 2644389 no rank Citrobacter sp. FDAARGOS_156 4 0 1 species 1702170 Citrobacter sp. CFNIH10 1 1920110 species 8 0 1 67824 species 9 0 Citrobacter farmeri 0 9 species 67825 1 Citrobacter rodentium Citrobacter amalonaticus 35703 species 1 0 25 genus 590 1 3 0 1 80 Salmonella Salmonella bongori 1 54736 species 4 0 0 75 species 28901 1 Salmonella enterica 0 39 1330545 genus 3 Lelliottia amnigena 19 0 1 61646 species Lelliottia jeotgali 1 1907578 species 12 0 1 species 69220 8 0 Lelliottia nimipressuralis 46 0 3 genus 83654 0 39 2627398 no rank 2 species 1920116 1 0 11 Leclercia sp. LSNIH3 Leclercia sp. LSNIH1 species 1920114 1 0 28 species 83655 1 0 7 Leclercia adecarboxylata Kluyvera 0 3 14 579 genus 2 1 1 61648 species 11 0 Kluyvera intermedia 11 0 1 genus 1335483 Shimwellia blattae 0 11 563 species 1 1 0 1 genus 401618 1 species 401619 1 0 Candidatus Riesia pediculicola 6 0 65 160674 genus 3 1 Raoultella 1 54291 species 40 0 Raoultella ornithinolytica 0 19 species 575 1 Raoultella planticola 1 191675 no rank 1 0 0 1 84563 clade 1 1 0 1 clade 146507 0 1 species 134287 1 secondary endosymbiont of Heteropsylla cubana 198 3 0 1 4 order 1692040 Acidiferrobacterales 3 1692041 family 195 0 0 70 1744881 genus 1 0 70 species 1620215 1 Sulfuricaulis limicola Sulfurifustis 3 0 125 genus 1692042 1 2 Sulfurifustis variabilis 0 122 species 1675686 1 1 order 135615 4 0 1 family 868 4 0 1 869 genus 4 0 4 0 1 870 species Dichelobacter nodosus 169 0 17 1706369 order 0 24 family 1706375 3 1 630749 genus 9 0 0 9 2631504 no rank 1 species 1620392 1 0 9 Spongiibacter sp. IMCC21906 1 genus 1434050 9 0 0 9 1470434 species 1 Zhongshania aliphaticivorans 6 0 1 1084558 genus Oceanicoccus sagamiensis 0 6 716816 species 1 0 31 1706372 family 2 0 31 1217416 genus 2 Halioglobus pacificus 930806 species 1 0 19 Halioglobus japonicus 930805 species 1 0 12 0 47 1706371 family 8 genus 447467 1 0 25 Simiduia agarivorans 0 25 species 447471 1 16 0 1 4 1 10 genus Cellvibrio 0 7 2624793 no rank 2 1987723 species 1 0 3 Cellvibrio sp. PSBB006 Cellvibrio sp. PSBB023 1 species 1945512 4 0 0 8 155077 species 1 Cellvibrio japonicus 1 genus 2036021 1 0 Agarilytica rhodophyticola 1 0 1 1737490 species 1 2425 genus 3 0 1 species 2426 3 0 Teredinibacter turnerae 0 2 316625 genus 1 Saccharophagus degradans 1 86304 species 2 0 Microbulbiferaceae 67 0 2 1 4 family 1706373 65 0 3 genus 48073 1 species 260552 16 0 Microbulbifer agarilyticus Microbulbifer aggregans 0 24 1769779 species 1 Microbulbifer thermotolerans 0 25 252514 species 1 4 no rank 118884 76 0 genus 349742 1 0 35 Sedimenticola thiotaurini 1543721 species 1 0 35 1608298 genus 1 0 24 Thiolapillus brandeum 1 species 1076588 24 0 clade 32036 1 0 6 6 0 1 genus 1541743 Candidatus Ruthia magnifica 0 6 386487 species 1 1 genus 1524249 11 0 Pseudohongiella spirulinae 1249552 species 1 0 11 Alteromonadales order 135622 1 68 0 3 443 0 32 267888 family 9 53246 genus 9 0 32 Pseudoalteromonas atlantica 1 species 288 2 0 1 267375 species 2 0 Pseudoalteromonas marina Pseudoalteromonas spongiae 298657 species 1 0 6 Pseudoalteromonas tetraodonis 5 0 1 species 43659 Pseudoalteromonas piscicida 1 43662 species 2 0 Pseudoalteromonas issachenkonii 2 0 1 species 152297 Pseudoalteromonas rubra 43658 species 1 0 5 no rank 194690 2 0 8 Pseudoalteromonas sp. 1_2015MBL_MicDiv 3 0 1 species 1720343 Pseudoalteromonas sp. SM9913 0 5 species 234831 1 2 family 267894 3 0 67572 genus 2 0 3 1 0 1 no rank 2614957 1 0 1 314282 species Psychromonas sp. CNPT3 1 species 357794 2 0 Psychromonas ingrahamii 267893 family 4 0 41 4 135575 genus 41 0 2614829 no rank 2 0 24 Idiomarina sp. OT37-5b species 2100422 1 0 13 1 species 2055892 11 0 Idiomarina sp. X4 species 1096243 1 0 10 Idiomarina piscisalsi 1 species 135577 7 0 Idiomarina loihiensis 0 110 family 267890 21 110 0 21 22 genus Shewanella putrefaciens 5 0 1 species 24 0 3 271097 species 1 Shewanella sediminis Shewanella marisflavi 0 5 260364 species 1 Shewanella pealeana 1 70864 species 1 0 0 20 60478 species 1 Shewanella amazonensis 0 18 196818 no rank 6 Shewanella sp. W3-18-1 0 1 species 351745 1 0 4 species 60481 1 Shewanella sp. MR-7 Shewanella sp. WE21 species 2029986 1 0 1 1 60480 species 5 0 Shewanella sp. MR-4 Shewanella sp. ANA-3 5 0 1 94122 species 2 0 1 species 2059264 Shewanella sp. Pdp11 Shewanella woodyi 60961 species 1 0 7 0 2 404011 species 1 Shewanella piezotolerans 271098 species 1 0 3 Shewanella halifaxensis Shewanella frigidimarina species 56812 1 0 1 Shewanella baltica 1 62322 species 6 0 7 0 1 2018305 species Shewanella bicestrii Shewanella loihica 1 359303 species 25 0 0 2 192073 species 1 Shewanella denitrificans Shewanella psychrophila 0 4 225848 species 1 1 species 60217 1 0 Shewanella violacea 6 family 267889 19 0 genus 1518149 1 0 2 2 0 1 1763536 species Thalassotalea crassostreae 0 17 genus 28228 5 196834 no rank 3 0 7 Colwellia sp. PAMC 21821 1 1816219 species 2 0 Colwellia sp. PAMC 20917 4 0 1 species 1816218 species 58049 1 0 1 Colwellia sp. MT41 species 1967665 1 0 8 Colwellia beringensis Colwellia psychrerythraea 2 0 1 28229 species 199 0 23 72275 family 1 genus 1621534 3 0 Paraglaciecola psychrophila 0 3 species 326544 1 2 0 1 89404 genus 1 2618684 no rank 2 0 Glaciecola sp. 4H-3-7+YE-5 1 983545 species 2 0 3 0 1 genus 261825 Agarivorans gilvus 3 0 1 species 680279 21 0 9 genus 226 0 5 no rank 2614992 3 Alteromonas sp. Mac1 1 1777491 species 1 0 1917158 species 1 0 1 Alteromonas sp. RW2A1 Alteromonas sp. MB-3u-76 0 3 2058133 species 1 Alteromonas mediterranea 314275 species 1 0 3 Alteromonas australica 2 0 1 species 589873 Alteromonas naphthalenivorans 0 2 species 715451 1 Alteromonas macleodii 7 0 1 28108 species Alteromonas stellipolaris 1 233316 species 1 0 species 287094 1 0 1 Alteromonas addita 0 14 genus 1751872 1 1 species 1526571 14 0 Lacimicrobium alkaliphilum 0 1 156 2742 genus 10 1 Marinobacter 37 0 1 species 2743 Marinobacter hydrocarbonoclasticus 34 0 3 no rank 83889 Marinobacter sp. LQ44 7 0 1 species 1749259 8 0 1 species 490759 Marinobacter sp. BSs20148 Marinobacter sp. CP1 19 0 1 1671721 species 0 12 1874317 species 1 Marinobacter salinus Marinobacter similis 1 1420916 species 24 0 Marinobacter salarius species 1420917 1 0 18 14 0 1 species 1033846 Marinobacter adhaerens 0 16 330734 species 1 Marinobacter psychrophilus 0 34 267892 family 1 44011 genus 1 0 34 0 34 species 44012 1 Ferrimonas balearica 0 2 267891 family 1 1 genus 58050 2 0 Moritella viscosa 1 80854 species 2 0 140 0 1 3 1 1934945 order Immundisolibacterales 1934946 family 2 0 139 1 0 139 1934947 genus 2 1 Immundisolibacter 1 1810504 species 138 0 Immundisolibacter cernigliae Oceanospirillales 135619 order 47 1 18 0 1222 3 1920240 family 9 0 0 9 261963 genus 3 Kangiella sediminilitoris 1 0 1 species 1144748 Kangiella profundi 1 1561924 species 6 0 261964 species 1 0 2 Kangiella koreensis family 224379 1 0 22 1 158481 genus 22 0 0 22 158327 species 1 Hahella chejuensis Alcanivoracaceae 8 1 224372 family 221 0 1 5 0 209 genus 59753 1 6 Alcanivorax 60 0 1 species 1094342 Alcanivorax xenomutans 0 9 no rank 2638842 1 1 species 1113728 9 0 Alcanivorax sp. NBRC 101098 1 species 285091 64 0 Alcanivorax dieselolei Alcanivorax borkumensis 0 11 59754 species 1 0 60 1306787 species 1 Alcanivorax pacificus 1 genus 2025617 11 0 1 species 1917421 11 0 Ketobacter alkanivorans 0 10 835 family 28256 1 24 Halomonadaceae 0 6 539 2745 genus 15 1 Halomonas Halomonas aestuarii 106 0 1 1897729 species Halomonas huangheensis 1 species 1178482 25 0 Halomonas campaniensis 213554 species 1 0 10 189 0 8 no rank 2609666 0 8 1118153 species 1 Halomonas sp. GFAJ-1 1 2136172 species 54 0 Halomonas sp. SF2003 Halomonas sp. 'Soap Lake #7' 1 1962264 species 11 0 Halomonas sp. 'Soap Lake #6' 1 1949203 species 11 0 Halomonas sp. R57-5 1 1610576 species 11 0 1883416 species 1 0 71 Halomonas sp. 1513 0 10 1971364 species 1 Halomonas sp. GT 0 13 species 1504981 1 Halomonas sp. KO116 507626 species 1 0 43 Halomonas chromatireducens Halomonas beimenensis species 475662 1 0 125 Halomonas hydrothermalis 0 35 species 115561 1 37 0 1 genus 204286 0 37 28258 species 1 Cobetia marina 504090 genus 2 0 74 698828 species 1 0 35 Kushneria konosiri Kushneria marisflavi 39 0 1 species 157779 genus 376488 1 0 57 Halotalea alkalilenta 376489 species 1 0 57 genus 404432 1 2 1 0 78 Salinicola Salinicola tamaricis 1771309 species 1 0 77 1 42054 genus 38 0 38 0 1 158080 species Chromohalobacter salexigens 114403 no rank 1 0 2 1 genus 235572 2 0 Candidatus Portiera aleyrodidarum species 91844 1 0 2 0 8 family 191033 1 8 0 1 141450 genus 8 0 1 species 141451 Oleiphilus messinensis 0 25 255527 family 2 0 8 genus 230494 1 Reinekea forsetii 1 1336806 species 8 0 17 0 1 1445504 genus Gynuella sunshinyii 17 0 1 1445505 species 135620 family 7 0 84 0 8 187492 genus 1 Thalassolituus oleivorans 0 8 species 187493 1 2 genus 28253 12 0 0 8 no rank 196814 1 1 species 400668 8 0 Marinomonas sp. MWYL1 1 936476 species 4 0 Marinomonas posidonica 9 0 1 genus 1537406 Bacterioplanes sanyensis 1 species 1249553 9 0 Marinobacterium 49 1 0 2 1 48075 genus 1 species 1821621 48 0 Marinobacterium aestuarii genus 188907 1 0 6 1 species 188908 6 0 Oleispira antarctica 2 order 1240482 6 0 0 6 family 1240483 2 3 0 1 1193503 genus Gilliamella apicola 3 0 1 1196095 species 3 0 1 1335631 genus 1 1267021 species 3 0 Frischella perrara 0 53 37221 class 28211 1 434 Alphaproteobacteria 0 1 54526 order 1 1 0 1 2045213 genus Candidatus Fonsibacter ubiquis 1 1925548 species 1 0 order 2800060 4 0 73 0 73 69657 family 4 genus 85 1 3 0 1 64 Hyphomonas 1 2630699 no rank 18 0 1 species 1906738 18 0 Hyphomonas sp. Mor2 Hyphomonas neptunium 45 0 1 81032 species 9 0 1 genus 2723 9 0 1 2724 species Hirschia baltica 0 13 255473 order 1 1 255474 family 13 0 1 208215 genus 13 0 Parvularcula bermudensis 1 species 208216 13 0 Sphingomonadales 1 77 order 204457 4730 17 0 3928 0 31 54 1 41297 family Sphingomonadaceae 0 44 2685927 genus 1 Sphingomonas sp. JJ-A5 1 1921510 species 44 0 Sphingopyxis 1 10 genus 165697 689 10 0 Sphingopyxis granuli 0 100 267128 species 1 4 2614943 no rank 228 0 Sphingopyxis sp. QXT-31 67 0 1 1357916 species 0 102 species 1866325 1 Sphingopyxis sp. MG 1 species 292913 55 0 Sphingopyxis sp. 113P3 Sphingopyxis sp. LPB0140 0 4 species 1913578 1 1 33052 species 43 0 Sphingopyxis terrae 117207 species 1 0 45 Sphingopyxis alaskensis Sphingopyxis macrogoltabida species 33050 1 0 159 0 104 1515612 species 1 Sphingopyxis fribergensis Novosphingobium 1 5 genus 165696 327 3 0 Novosphingobium resinovorum 158500 species 1 0 124 1 species 48935 55 0 Novosphingobium aromaticivorans Novosphingobium pentaromativorans 1 species 205844 81 0 no rank 2644732 1 0 64 0 64 702113 species 1 Novosphingobium sp. PP1Y 1 150203 genus 68 0 2626550 no rank 1 0 68 Blastomonas sp. RAC04 68 0 1 1842535 species genus 2709685 1 0 35 Sphingorhabdus flavimaris 1 species 266812 35 0 15 1 13687 genus 1559 14 0 Sphingomonas Sphingomonas sanxanigenens 114 0 1 397260 species 0 118 93064 species 1 Sphingomonas koreensis Sphingomonas hengshuiensis 83 0 1 1609977 species 114 0 1 species 152682 Sphingomonas melonis Sphingomonas panacis 1560345 species 1 0 141 Sphingomonas wittichii 0 188 347 species 160791 1 2 Sphingomonas sp. DC-6 159 0 1 strain 1283312 196159 no rank 6 0 550 Sphingomonas sp. LK11 114 0 1 species 1390395 Sphingomonas sp. MM-1 745310 species 1 0 94 Sphingomonas sp. LM7 81 0 1 species 1938607 1327635 species 1 0 83 Sphingomonas sp. Cra20 1 1030157 species 71 0 Sphingomonas sp. KC8 1 1961362 species 107 0 Sphingomonas sp. NIC1 Sphingomonas taxi 0 78 1549858 species 1 98 0 1 genus 1649486 98 0 1 species 1850238 Rhizorhabdus dicambivorans 0 65 genus 1434046 2 2614947 no rank 2 0 65 1 species 1806885 22 0 Sphingorhabdus sp. M41 Sphingorhabdus sp. YGSMI21 43 0 1 2077182 species 1 genus 541 9 0 Zymomonas mobilis 1 species 542 9 0 72173 genus 1 0 55 55 0 1 no rank 2630544 Citromicrobium sp. JL477 1634516 species 1 0 55 Sphingobium 15 1 165695 genus 948 22 0 0 51 species 46429 1 Sphingobium chlorophenolicum 1 1673076 species 73 0 Sphingobium hydrophobicum 1 species 76947 58 0 Sphingobium herbicidovorans 55 0 1 332056 species Sphingobium japonicum 1 species 13690 102 0 Sphingobium yanoikuyae Sphingobium cloacae species 120107 1 0 66 Sphingobium baderi 48 0 1 1332080 species Sphingobium indicum 58 0 1 332055 species 0 415 2611147 no rank 6 1 species 1843368 84 0 Sphingobium sp. RAC03 1 species 1855519 47 0 Sphingobium sp. EP60837 Sphingobium sp. TKS 0 107 species 1315974 1 1 484429 species 62 0 Sphingobium sp. YBL2 64 0 1 species 407020 Sphingobium sp. MI1205 species 627192 1 0 51 Sphingobium sp. SYK-6 14 0 785 family 335929 1 22 Erythrobacteraceae 0 39 genus 2800685 1 Altererythrobacter marensis 1 543877 species 39 0 genus 361177 1 4 10 0 110 Altererythrobacter Altererythrobacter epoxidivorans 0 37 species 361183 1 Altererythrobacter ishigakiensis 17 0 1 species 476157 Altererythrobacter atlanticus 0 46 species 1267766 1 0 85 2800686 genus 2 1 species 1982042 24 0 Altererythrobacter mangrovi Altererythrobacter dongtanensis 0 61 692370 species 1 0 55 genus 1855416 2 species 266951 1 0 25 Erythrobacter seohaensis Erythrobacter flavus 1 species 192812 30 0 0 36 genus 2800681 2 24 0 1 502682 species Erythrobacter gangjinensis Erythrobacter atlanticus 12 0 1 1648404 species Croceicoccus genus 1295327 1 3 3 0 114 36 0 1 1348774 species Croceicoccus naphthovorans 0 75 species 450378 1 Croceicoccus marinus no rank 2800788 6 0 295 160 1 0 1 3 genus 1041 Erythrobacter Erythrobacter litoralis 0 105 species 39960 1 Porphyrobacter neustonensis 0 54 species 1112 1 135 0 6 1 3 genus 1111 Porphyrobacter no rank 2683265 2 0 129 Porphyrobacter sp. LM 6 0 72 1896196 species 1 0 57 2023229 species 1 Porphyrobacter HT-58-2 genus 2800682 1 0 37 1 645517 species 37 0 Altererythrobacter namhicola 0 2 order 1921002 2 1 0 1 family 1777752 1521255 genus 1 0 1 0 1 91604 species 1 Candidatus Paracaedibacter acanthamoebae 0 1 family 2100208 1 0 1 genus 1509243 1 Candidatus Nucleicultrix amoebiphila species 1509244 1 0 1 40 0 1 2800059 order 0 40 family 2800061 1 genus 74317 1 0 40 1 74318 species 40 0 Maricaulis maris order 766 17 0 42 1 0 1 family 1328881 1 0 1 411566 genus 234827 species 1 0 1 Candidatus Midichloria mitochondrii 4 775 family 12 0 0 12 33988 tribe 4 4 780 genus 12 0 species group 1129742 1 0 2 species 788 1 0 2 Rickettsia canadensis 3 114277 species group 10 0 1 species 42862 4 0 Rickettsia felis 0 2 species 33989 1 Rickettsia amblyommatis 4 0 1 species 787 Rickettsia australis 0 29 family 942 12 2 943 genus 2 0 species group 106178 2 0 2 Ehrlichia muris 0 1 species 35795 1 Ehrlichia ruminantium 0 1 779 species 1 952 tribe 4 0 11 Wolbachia 953 genus 4 1 0 1 11 0 10 no rank 2640676 3 Wolbachia endosymbiont of Cimex lectularius 0 4 species 246273 1 Wolbachia endosymbiont of Onchocerca ochengi species 100901 1 0 3 Wolbachia endosymbiont of Onchocerca volvulus 0 3 77551 species 1 33993 genus 3 0 5 Neorickettsia risticii 0 1 950 species 1 0 3 33994 species 1 Neorickettsia helminthoeca Neorickettsia sennetsu 1 951 species 1 0 3 768 genus 11 0 4 0 1 769 species Anaplasma centrale 0 3 species 770 1 Anaplasma marginale species group 106179 1 0 4 Anaplasma phagocytophilum 4 0 1 species 948 Rhizobiales 87 0 22307 order 356 1 175 82115 family 47 1 0 17 3691 Rhizobiaceae 2 1 323620 genus 161 0 3 Shinella 2643062 no rank 1 0 158 Shinella sp. HZN7 158 0 1 species 879274 2 genus 34019 3 0 Candidatus Liberibacter solanacearum 2 0 1 species 556287 species 34020 1 0 1 Candidatus Liberibacter africanus 0 994 no rank 227292 10 0 1 165 genus 106591 1 3 Ensifer 0 99 106592 species 1 Ensifer adhaerens Ensifer sojae 65 0 1 716925 species 9 0 829 28105 genus 7 1 Sinorhizobium 663276 species group 1 0 252 0 252 species 380 1 Sinorhizobium fredii 2613772 no rank 2 0 182 Sinorhizobium sp. RAC02 1 species 1842534 110 0 Sinorhizobium sp. CCBAU 05631 794846 species 1 0 72 0 112 species 194963 1 Sinorhizobium americanum 0 78 species 110321 1 Sinorhizobium medicae 196 0 1 species 382 Sinorhizobium meliloti 2516 0 32 227290 no rank Agrobacterium 357 genus 7 1 0 14 522 2 2632611 no rank 90 0 60 0 1 861208 species Agrobacterium sp. H13-3 Agrobacterium sp. RAC06 1 1842536 species 30 0 Agrobacterium vitis 44 0 1 species 373 species group 1183400 2 0 312 Agrobacterium fabrum 0 73 1176649 species 1 239 0 1 species 358 Agrobacterium tumefaciens 1 species 359 62 0 Agrobacterium rhizogenes genus 1525371 1 2 4 0 125 Neorhizobium Neorhizobium galegae 0 121 399 species 1 0 145 1869 379 genus 23 1 Rhizobium 187 0 1 species 29449 Rhizobium etli Rhizobium tropici 0 68 398 species 1 Rhizobium leguminosarum 490 0 1 384 species Rhizobium gallicum species 56730 1 0 114 730 0 17 2613769 no rank 0 77 2048897 species 1 Rhizobium sp. NXC24 Rhizobium sp. Kim5 2020311 species 1 0 55 Rhizobium sp. NT-26 1 species 1125847 54 0 0 72 2020312 species 1 Rhizobium sp. CIAT894 Rhizobium sp. S41 34 0 1 species 1869170 Rhizobium sp. N324 species 1703969 1 0 77 Rhizobium sp. N113 species 1703960 1 0 1 Rhizobium sp. NXC14 1 species 1981173 65 0 0 1 1703962 species 1 Rhizobium sp. N1341 Rhizobium sp. IRBG74 species 424182 1 0 43 Rhizobium sp. 10195 0 80 2028343 species 1 1 2020313 species 12 0 Rhizobium sp. TAL182 0 7 species 1703961 1 Rhizobium sp. N1314 1571470 species 1 0 58 Rhizobium sp. ACO-34A 52 0 1 1301032 species Rhizobium sp. IE4771 Rhizobium sp. Y9 1914541 species 1 0 35 1 1703966 species 7 0 Rhizobium sp. N731 Rhizobium phaseoli 396 species 1 0 135 family 45401 1 17 0 4 1079 Hyphomicrobiaceae 1 genus 119044 22 0 Candidatus Filomicrobium marinum 1 species 1608628 22 0 Hyphomicrobium 215 0 4 1 4 genus 81 53399 species 1 0 100 Hyphomicrobium denitrificans 0 52 species 1427356 1 Hyphomicrobium nitrativorans no rank 2619925 1 0 59 Hyphomicrobium sp. MC1 0 59 species 717785 1 2 0 67 1068 genus 2 1 Rhodomicrobium 65 0 1 1069 species Rhodomicrobium vannielii Blastochloris 178 10 0 1 2 genus 59282 168 0 1 species 1079 Blastochloris viridis Devosia genus 46913 1 4 12 0 286 0 274 no rank 196773 3 1736675 species 1 0 129 Devosia sp. A16 2083786 species 1 0 49 Devosia sp. I507 96 0 1 species 1643450 Devosia sp. H5989 1 genus 1082930 39 0 Pelagibacterium halotolerans species 531813 1 0 39 1 2 genus 29407 268 0 2 Rhodoplanes 0 266 2619116 no rank 1 Rhodoplanes sp. Z2-YC6860 0 266 674703 species 1 Bradyrhizobiaceae 40 0 10784 41294 family 25 1 0 2 131 40136 genus 2 1 Oligotropha Oligotropha carboxidovorans 0 129 40137 species 1 Bosea 5 1 85413 genus 778 0 10 528 0 3 no rank 2653178 Bosea sp. RAC05 0 208 1842539 species 1 148 0 1 1792307 species Bosea sp. PAMC 26642 1 2015316 species 172 0 Bosea sp. AS-1 Bosea vaviloviae 0 240 1526658 species 1 2 1 1649510 genus 96 2 0 Variibacter Variibacter gotjawalensis 0 94 1333996 species 1 genus 911 2 0 406 species 913 1 0 125 Nitrobacter winogradskyi Nitrobacter hamburgensis 912 species 1 0 281 Bradyrhizobium 6904 74 0 11 1 374 genus 0 954 375 species 1 Bradyrhizobium japonicum 1 species 1355477 983 0 Bradyrhizobium diazoefficiens species 44255 1 0 572 Bradyrhizobium oligotrophicum 6 no rank 2631580 3514 0 Bradyrhizobium sp. CCGE-LA001 485 0 1 1223566 species 1 species 288000 543 0 Bradyrhizobium sp. BTAi1 Bradyrhizobium sp. ORS 278 species 114615 1 0 556 Bradyrhizobium sp. 0 496 species 376 1 0 932 2057741 species 1 Bradyrhizobium sp. SK17 0 502 115808 species 1 Bradyrhizobium sp. ORS 285 Bradyrhizobium icense 1274631 species 1 0 807 1 2 genus 1073 2429 0 4 Rhodopseudomonas 1 species 1076 2425 0 Rhodopseudomonas palustris 5 119042 no rank 275 0 0 119 1734920 genus 1 Pseudorhodoplanes sinuspersici 119 0 1 1235591 species Hartmannibacter 111 9 0 2 1 1572860 genus 1482074 species 1 0 102 Hartmannibacter diazotrophicus genus 1484898 1 2 0 1 45 Methyloceanibacter Methyloceanibacter caenitepidi 0 44 1384459 species 1 7 1 335928 family 547 0 1 Xanthobacteraceae Xanthobacter genus 279 1 2 7 0 173 166 0 1 280 species Xanthobacter autotrophicus genus 6 1 2 0 2 162 Azorhizobium Azorhizobium caulinodans 0 160 species 7 1 Starkeya 152053 genus 2 1 0 4 211 207 0 1 species 921 Starkeya novella 69277 family 18 1 6 0 1725 Phyllobacteriaceae Phyllobacterium 41 0 1 1 2 genus 28100 Phyllobacterium zundukense species 1867719 1 0 40 449972 genus 1 0 60 0 60 2643807 no rank 1 0 60 species 266779 1 Chelativorans sp. BNC1 0 41 245876 genus 1 41 0 1 species 472175 Nitratireductor basaltis Hoeflea genus 274591 1 2 0 1 72 71 0 1 no rank 2614931 1620421 species 1 0 71 Hoeflea sp. IMCC20628 35 0 1351 68287 genus 9 1 Mesorhizobium Mesorhizobium japonicum 1 2066070 species 206 0 Mesorhizobium loti 381 species 1 0 158 Mesorhizobium amorphae 71433 species 1 0 169 325217 no rank 1 0 136 0 136 278153 species 1 Mesorhizobium sp. WSM1497 Mesorhizobium opportunistum 593909 species 1 0 173 536018 species 1 0 143 Mesorhizobium australicum 183 0 1 species 39645 Mesorhizobium ciceri 0 148 species 1670800 1 Mesorhizobium sp. B7 31988 genus 2 1 0 1 154 Aminobacter Aminobacter aminovorans species 83263 1 0 153 Beijerinckiaceae 4 1 45404 family 190 2 0 Methylocella 124 0 2 2 1 120652 genus 1 species 199596 122 0 Methylocella silvestris 532 genus 1 0 64 533 species 1 0 64 Beijerinckia indica family 2036754 3 0 347 Chelatococcus 347 0 8 1 3 genus 28209 1 no rank 2638111 205 0 Chelatococcus sp. CO-6 0 205 1702325 species 1 134 0 1 444444 species Chelatococcus daeguensis 14 119045 family 2590 0 Methylobacterium 1512 0 62 1 9 genus 407 145 0 1 334852 species Methylobacterium oryzae Methylobacterium radiotolerans 1 31998 species 190 0 Methylobacterium aquaticum species 270351 1 0 210 Methylobacterium phyllosphaerae 1 418223 species 155 0 Methylobacterium nodulans 0 215 114616 species 1 3 no rank 2615210 535 0 185 0 1 species 1479019 Methylobacterium sp. C1 Methylobacterium sp. AMS5 0 143 species 925818 1 Methylobacterium sp. 4-46 species 426117 1 0 207 2 1 186650 genus 183 0 1 Microvirga Microvirga ossetica 1 species 1882682 182 0 2282523 genus 3 0 895 310 0 1 species 223967 Methylobacterium populi 0 130 29429 species 1 Methylobacterium zatmanii Methylobacterium extorquens species 408 1 0 455 6 0 2 772 family 0 6 773 genus 2 Bartonella bacilliformis 1 0 1 species 774 species 1686310 1 0 5 Bartonella apis 180 0 2 1 17 family 118882 Brucellaceae 5 1 528 genus 74 0 1 Ochrobactrum 17 0 1 species 571256 Ochrobactrum pituitosum 1 529 species 20 0 Ochrobactrum anthropi Ochrobactrum sp. A44 1 271865 species 16 0 species 419475 1 0 20 Ochrobactrum pseudogrignonense 104 0 55 1 11 genus 234 Brucella Brucella canis 4 0 1 species 36855 Brucella ceti species 120577 1 0 5 0 1 29459 species 1 Brucella melitensis species 29461 1 0 2 Brucella suis Brucella abortus 1 235 species 3 0 Brucella pinnipedialis 1 120576 species 5 0 0 18 2632610 no rank 3 Brucella sp. 09RB8471 0 6 1149952 species 1 Brucella sp. 141012304 1885919 species 1 0 3 1 1844051 species 9 0 Brucella sp. 09RB8910 1 981386 species 11 0 Brucella vulpis 31993 family 6 1 0 1 375 Methylocystaceae Methylocystis 7 0 214 133 genus 3 1 655015 species 1 0 90 Methylocystis bryophila 0 117 2625913 no rank 1 Methylocystis sp. SC2 1 187303 species 117 0 Methylosinus 160 0 4 2 1 425 genus 426 species 1 0 156 Methylosinus trichosporium 2 family 119043 77 0 77 0 5 1 2 genus 256616 Parvibaculum 256618 species 1 0 72 Parvibaculum lavamentivorans Aurantimonadaceae 354 2 0 1 7 family 255475 Aureimonas genus 414371 1 2 1 0 125 124 0 1 2615206 no rank Aureimonas sp. AU20 1349819 species 1 0 124 Martelella genus 293088 1 4 4 0 227 no rank 2629616 1 0 69 Martelella sp. AD-3 1 686597 species 69 0 Martelella mediterranea 1 293089 species 92 0 Martelella endophytica 62 0 1 species 1486262 3564 15 0 1 77 order 204455 Rhodobacterales 0 42 3549 31989 family 76 1 Rhodobacteraceae genus 1060 1 5 5 0 411 Rhodobacter species 1061 1 0 51 Rhodobacter capsulatus 198 0 1 1063 species Rhodobacter sphaeroides 157 0 2 no rank 196779 1 species 1850250 67 0 Rhodobacter sp. LPB0142 90 0 1 2033869 species Rhodobacter sp. CZR27 82 0 2 3 1 60136 genus Sulfitobacter 1 no rank 196795 56 0 Sulfitobacter sp. AM1-D1 1 species 1917485 56 0 1402135 species 1 0 24 Sulfitobacter pseudonitzschiae 41 0 1 genus 74032 Antarctobacter heliothermus 1 74033 species 41 0 13 0 1 genus 74030 Roseovarius mucosus 0 13 215743 species 1 Tateyamaria 0 1 32 genus 299261 1 2 Tateyamaria omphalii 1 299262 species 31 0 20 0 1 119541 genus Rhodobaca barguzinensis 1 species 441209 20 0 genus 360528 1 2 1 0 90 Pelagibaca 1250539 species 1 0 89 Pelagibaca abyssi 0 42 genus 53945 3 Octadecabacter temperatus species 1458307 1 0 12 0 20 1217908 species 1 Octadecabacter antarcticus Octadecabacter arcticus 10 0 1 species 53946 58842 genus 1 0 77 no rank 2624628 1 0 77 species 2009329 1 0 77 Sagittula sp. P11 53 0 1 genus 1609958 53 0 1 2643318 no rank 0 53 species 1609966 1 Confluentimicrobium sp. EMB200-NS6 Dinoroseobacter 1 2 genus 309512 83 3 0 80 0 1 species 215813 Dinoroseobacter shibae Phaeobacter 242 0 3 1 5 genus 302485 0 95 species 221822 1 Phaeobacter inhibens Phaeobacter gallaeciensis 0 67 species 60890 1 1 1844006 species 16 0 Phaeobacter porticola Phaeobacter piscinae 61 0 1 species 1580596 0 188 263377 genus 2 1 2640570 no rank 84 0 Yangia sp. CCB-MM3 1 species 1792508 84 0 species 1229727 1 0 104 Thiobacimonas profunda 1 genus 188905 24 0 24 0 1 2645469 no rank 290400 species 1 0 24 Jannaschia sp. CCS1 2433 genus 2 0 64 Roseobacter litoralis species 42443 1 0 36 1 2434 species 28 0 Roseobacter denitrificans 1 1284657 genus 3 0 3 0 1 species 1284658 Planktomarina temperata 1 2 genus 1097466 98 0 1 Defluviimonas Defluviimonas alba species 1335048 1 0 97 0 9 genus 1579315 1 Halocynthiibacter arcticus species 1579316 1 0 9 2211641 genus 1 0 50 Loktanella vestfoldensis 0 50 245188 species 1 2 1 367771 genus 86 2 0 Marinovum Marinovum algicola 1 species 42444 84 0 1 genus 191028 48 0 0 48 species 133924 1 Leisingera methylohalidivorans Paracoccus 9 0 683 265 genus 9 1 246570 no rank 1 0 29 0 29 species 1529068 1 Paracoccus sp. BM15 Paracoccus zhejiangensis 0 73 1077935 species 1 species 147645 1 0 119 Paracoccus yeei 1 266 species 144 0 Paracoccus denitrificans 48 0 1 species 2065379 Paracoccus sp. CBA4604 57 0 1 34003 species Paracoccus aminophilus species 34004 1 0 129 Paracoccus aminovorans Paracoccus contaminans 75 0 1 species 1945662 0 183 875170 genus 4 Celeribacter indicus 76 0 1 1208324 species Celeribacter ethanolicus 1758178 species 1 0 40 Celeribacter manganoxidans 0 59 1411902 species 1 Celeribacter marinus 0 8 1397108 species 1 285107 genus 2 1 1 0 50 Thioclava 1 1915078 species 49 0 Thioclava nitratireducens 0 10 genus 1759396 1 0 10 no rank 2622455 1 0 10 1920883 species 1 Marivivens sp. JLT3646 1 436357 genus 1 0 Thalassococcus Pannonibacter 2 1 227873 genus 79 0 1 Pannonibacter phragmitetus 1 species 121719 78 0 0 276 34008 genus 3 2631432 no rank 2 0 127 1 308754 species 78 0 Rhodovulum sp. MB263 species 1564506 1 0 49 Rhodovulum sp. P5 35806 species 1 0 149 Rhodovulum sulfidophilum no rank 58840 2 0 58 Rhodobacteraceae bacterium QY30 species 2033435 1 0 40 Rhodobacteraceae bacterium 18 0 1 1904441 species 0 50 genus 92944 2 1 92947 species 20 0 Ketogulonicigenium robustum 30 0 1 species 92945 Ketogulonicigenium vulgare 1 1649279 genus 19 0 Ruegeria mobilis 0 19 species 379347 1 genus 159345 1 0 56 species 159346 1 0 56 Roseibacterium elongatum Ruegeria genus 97050 1 3 0 1 93 1 2625375 no rank 36 0 292414 species 1 0 36 Ruegeria sp. TM1040 1 species 89184 56 0 Ruegeria pomeroyi 1 4 genus 478070 193 2 0 Labrenzia Labrenzia aggregata 69 0 1 187304 species 122 0 2 2648686 no rank Labrenzia sp. VG12 1 2021862 species 51 0 0 71 species 1674922 1 Labrenzia sp. CP4 Caulobacterales 2 0 1915 204458 order 18 1 Caulobacteraceae 1913 17 0 17 1 76892 family genus 20 1 0 283 Phenylobacterium zucineum 283 0 1 284016 species Brevundimonas 0 9 524 41275 genus 7 1 1 species 41276 87 0 Brevundimonas vesicularis 0 75 588932 species 1 Brevundimonas naejangsanensis 3 no rank 2622653 262 0 Brevundimonas sp. GW460-12-10-14-LB2 0 82 1827469 species 1 Brevundimonas sp. LM2 species 1938605 1 0 89 0 91 species 1532555 1 Brevundimonas sp. DS20 91 0 1 74313 species Brevundimonas subvibrioides 1 76890 genus 31 0 1 species 78587 31 0 Asticcacaulis excentricus Caulobacter genus 75 1 6 0 9 1017 Caulobacter vibrioides 274 0 1 species 155892 Caulobacter mirabilis 69666 species 1 0 218 Caulobacter segnis 160 0 1 88688 species Caulobacter henricii 117 0 1 species 69395 0 239 no rank 2648921 1 0 239 species 366602 1 Caulobacter sp. K31 1 81440 no rank 41 0 Caulobacteraceae bacterium OTSz_A_272 1 species 1759059 41 0 82117 no rank 6 0 403 0 3 178 991903 genus 2 1 Polymorphum Polymorphum gilvum 1 species 991904 175 0 1 genus 213485 25 0 Micavibrio aeruginosavorus 25 0 1 349221 species 62654 clade 1 0 3 3 0 1 767891 genus 767892 species 1 0 3 Candidatus Puniceispirillum marinum 9 0 197 genus 1632780 1 2 Phreatobacter Phreatobacter sp. S-12 0 188 1868589 species 1 0 5 order 1191478 1 1191479 family 1 0 5 5 0 1 genus 162171 0 5 1124597 species 1 Magnetococcus marinus 53 1 204441 order 4073 0 19 Rhodospirillales Acetobacteraceae 1380 8 0 28 1 433 family Gluconacetobacter 2 1 89583 genus 130 0 1 129 0 1 species 33996 Gluconacetobacter diazotrophicus 1 91914 genus 21 0 Asaia bogorensis 0 21 91915 species 1 125216 genus 3 1 0 1 366 Roseomonas 167 0 1 2617492 no rank Roseomonas sp. FDAARGOS_362 0 167 species 2018065 1 1 species 257708 198 0 Roseomonas gilardii 0 70 441 genus 2 318683 species 1 0 17 Gluconobacter albidus 53 0 1 442 species Gluconobacter oxydans 39 0 1 320496 genus Neoasaia chiangmaiensis 39 0 1 species 320497 1 364409 genus 82 0 0 82 364410 species 1 Granulibacter bethesdensis 120 0 7 genus 434 species 104102 1 0 12 Acetobacter tropicalis Acetobacter persici species 1076596 1 0 20 species 1633874 1 0 7 Acetobacter oryzifermentans Acetobacter pasteurianus 1 438 species 34 0 1 151157 subgenus 23 0 Acetobacter aceti 0 23 species 435 1 Acetobacter pomorum 0 3 65959 species 1 0 21 446692 species 1 Acetobacter senegalensis 0 18 153497 genus 1 153496 species 1 0 18 Kozakia baliensis 1 5 genus 1434011 199 0 6 Komagataeibacter Komagataeibacter europaeus 33995 species 1 0 32 28448 species 1 0 95 Komagataeibacter xylinus 0 22 1177712 species 1 Komagataeibacter medellinensis 1 species 265960 44 0 Komagataeibacter nataicola 13 0 1 genus 1602345 1 species 1510841 13 0 Parasaccharibacter apium Acidiphilium 314 1 0 3 1 522 genus Acidiphilium cryptum 155 0 1 species 524 Acidiphilium multivorum 158 0 1 species 62140 Rhodospirillaceae 41295 family 24 1 33 0 2674 20 0 1 genus 1804663 Haematospirillum jordaniae 0 20 1549855 species 1 13134 genus 5 1 0 12 552 Magnetospirillum Magnetospirillum magneticum species 84159 1 0 166 1 55518 species 146 0 Magnetospirillum gryphiswaldense 2 no rank 2617991 228 0 1639348 species 1 0 104 Magnetospirillum sp. ME-1 0 124 species 1663591 1 Magnetospirillum sp. XM-1 0 31 genus 1182780 1 no rank 2685734 1 0 31 1 species 1288970 31 0 Magnetospira sp. QH-2 Nitrospirillum 233 1 0 1 2 genus 1543705 28077 species 1 0 232 Nitrospirillum amazonense genus 171436 1 0 159 Tistrella mobilis 0 159 171437 species 1 32 0 2 168934 genus 1 species 220697 10 0 Thalassospira xiamenensis Thalassospira sp. CSC3H3 22 0 1 species 2048283 3 0 51 genus 1612157 1 2 Pararhodospirillum Pararhodospirillum photometricum 1 1084 species 48 0 0 102 1543704 genus 1 species 1612173 1 0 102 Niveispirillum cyanobacteriorum genus 191 1 5 0 32 1191 Azospirillum Azospirillum lipoferum 0 456 species 193 1 0 387 192 species 1 Azospirillum brasilense 96 0 1 1226968 species Azospirillum humicireducens 1 species 528244 220 0 Azospirillum thiophilum 270 2 0 1 3 genus 1081 Rhodospirillum Rhodospirillum rubrum 0 98 species 1085 1 170 0 1 species 34018 Rhodospirillum centenum 2 74152 phylum 4 0 0 2 447830 class 1 2 0 1 order 1783344 0 2 1783343 family 1 1 genus 1408194 2 0 2 0 1 species 1408281 Endomicrobium proavitum class 641853 1 0 2 2 0 1 order 641854 1 family 641876 2 0 423604 genus 1 0 2 1 423605 species 2 0 Elusimicrobium minutum 0 3 2498710 clade 1 3 0 1 phylum 67814 1 class 693071 3 0 Caldisericia phylum 508458 4 0 23 4 649775 class 23 0 0 23 order 649776 4 0 23 family 649777 4 336260 genus 1 0 2 Thermovirga lienii 0 2 species 336261 1 0 5 81466 genus 1 Aminobacterium colombiense 1 81468 species 5 0 1 genus 508459 12 0 Cloacibacillus porcorum 1 1197717 species 12 0 4 0 1 genus 49894 4 0 1 species 97477 Acetomicrobium mobile 1 0 name 0 2157 superkingdom 124 0 1268 0 44 1783275 clade 15 0 8 651137 phylum 3 1 0 1 order 31932 family 338190 1 0 1 1 0 1 338191 genus 1 0 1 species 1229909 Candidatus Nitrosopumilus sediminis 5 0 1 651142 no rank 0 5 1825023 genus 1 5 0 1 species 1846278 Candidatus Nitrosotenuis sp. AQ6f 1 1643678 class 2 0 1033996 order 1 0 2 0 2 1033997 family 1 1 497726 genus 2 0 Nitrososphaera viennensis species 1034015 1 0 2 0 6 phylum 51967 1 6 0 1 genus 498845 Candidatus Korarchaeum cryptofilum 0 6 498846 species 1 11 phylum 28889 30 0 183924 class 11 0 30 1 order 871006 4 0 871007 family 1 0 4 105850 genus 1 0 4 1 species 242703 4 0 Acidilobus saccharovorans 8 0 5 114380 order 0 4 family 2272 2 0 1 genus 54258 1 1 0 1 species 160233 Ignicoccus hospitalis 1 genus 477695 3 0 1 1200300 species 3 0 Thermogladius calderae 0 4 2307 family 3 0 2 2308 genus 1 Pyrodictium delaneyi species 1273541 1 0 2 54247 genus 1 0 1 Hyperthermus butylicus 1 54248 species 1 0 1 0 1 genus 54251 0 1 54252 species 1 Pyrolobus fumarii 18 0 5 2266 order 0 5 114378 family 2 0 5 2268 genus 2 Thermofilum adornatus 1 species 1365176 1 0 4 0 1 species 2269 Thermofilum pendens 2267 family 3 0 13 0 1 2276 genus 1 0 1 2277 species 1 Pyrobaculum islandicum genus 2270 2 0 12 Thermoproteus tenax 0 2 2271 species 1 Thermoproteus uzoniensis 10 0 1 species 184117 0 1224 phylum 28890 109 64 0 21 class 183968 order 2258 21 0 64 21 2259 family 64 0 1 genus 2260 1 0 Pyrococcus yayanosii 1 0 1 1008460 species 0 1 63 2263 genus 20 1 Thermococcus Thermococcus gammatolerans 6 0 1 187878 species 2627626 no rank 4 0 12 1 246969 species 3 0 Thermococcus sp. AM4 1 species 2016361 5 0 Thermococcus sp. EXT12c Thermococcus sp. 4557 0 1 species 1042877 1 Thermococcus sp. 5-4 0 3 species 2008440 1 Thermococcus sibiricus 0 4 172049 species 1 Thermococcus guaymasensis 1 110164 species 8 0 1505907 species 1 0 8 Thermococcus eurythermalis Thermococcus peptonophilus 53952 species 1 0 1 Thermococcus chitonophagus 2 0 1 species 54262 4 0 1 species 1712654 Thermococcus piezophilus species 2265 1 0 1 Thermococcus litoralis 2 0 1 49899 species Thermococcus profundus 1 72803 species 1 0 Thermococcus siculi 0 1 species 54077 1 Thermococcus barossii Thermococcus cleftensis 2 0 1 163003 species 2264 species 1 0 2 Thermococcus celer 1 species 195522 3 0 Thermococcus nautili Thermococcus radiotolerans 5 0 1 species 187880 183980 class 3 0 6 0 2 6 2231 order 3 1 Archaeoglobales 2 2232 family 4 0 1 genus 190818 1 0 Geoglobus acetivorans 1 0 1 565033 species 0 3 genus 2233 1 Archaeoglobus fulgidus species 2234 1 0 3 0 6 2283794 clade 3 183939 class 1 0 1 0 1 order 2182 1 0 1 196117 family 1 1 196118 genus 1 0 67760 species 1 0 1 Methanocaldococcus infernus Methanobacteria 183925 class 2 1 0 2 5 0 3 order 2158 1 2159 family 1 0 3 1 2172 genus 3 0 Methanobrevibacter ruminantium 0 3 83816 species 1 0 1130 2290931 clade 76 33 1 224756 class 146 0 2 Methanomicrobia 6 0 3 order 570264 Methanocellaceae 6 0 1 1 3 family 570265 2 570266 genus 5 0 Methanocella conradii 1 species 1175444 3 0 1175445 species 1 0 2 Methanocella arvoryzae Methanomicrobiales 2 0 86 order 2191 1 12 0 1 family 196137 1 1 genus 2202 1 0 Methanospirillum 0 1 73 2194 family 5 1 Methanomicrobiaceae 3 45989 genus 70 0 0 20 2198 species 1 Methanoculleus marisnigri Methanoculleus bourgensis 1 species 83986 27 0 no rank 2619537 1 0 23 Methanoculleus sp. MAB1 23 0 1 species 86622 2 0 1 genus 230355 Methanolacinia petrolearia 2 0 1 54120 species Methanoregulaceae 7 0 1 3 1 1198451 family 0 3 395331 genus 1 Methanoregula formicica 882104 species 1 0 3 0 3 genus 475087 1 1 species 475088 3 0 Methanosphaerula palustris 3 0 2 88404 family Methanocorpusculum 2 1 2192 genus 3 1 0 1 species 83984 2 0 Methanocorpusculum labreanum 94695 order 17 0 52 Methanosarcinaceae 50 0 1 15 1 2206 family Methanomethylovorans 1 genus 101191 1 0 0 3 2225 genus 1 Methanococcoides methylutens 0 3 species 2226 1 1 genus 2175 1 0 Methanohalophilus halophilus 2177 species 1 0 1 0 4 genus 2220 1 4 0 1 species 420950 Methanolobus psychrophilus Methanosarcina genus 2207 1 10 2 0 40 3 2644672 no rank 10 0 Methanosarcina sp. WWM596 2 0 1 1434103 species Methanosarcina sp. WH1 0 2 species 1434102 1 Methanosarcina sp. MTP4 1 1434100 species 6 0 Methanosarcina barkeri 14 0 1 2208 species Methanosarcina thermophila species 2210 1 0 2 species 170861 1 0 2 Methanosarcina lacustris Methanosarcina vacuolata 3 0 1 species 2215 species 2209 1 0 4 Methanosarcina mazei Methanosarcina siciliae 0 3 species 38027 1 2 143067 family 2 0 2 0 2 genus 2222 Methanothrix soehngenii 1 0 1 2223 species 301375 species 1 0 1 Methanosaeta harundinacea 43 class 183963 984 0 Natrialbales 14 1 1644060 order 321 1 0 13 1 1644061 family 320 0 6 Natrialbaceae 29287 genus 1 0 45 29288 species 1 0 45 Natronococcus occultus 1 387342 genus 24 0 387343 species 1 0 24 Halopiger xanaduensis Salinarchaeum 1269201 genus 2 1 0 1 20 19 0 1 no rank 2621923 0 19 species 1333523 1 Salinarchaeum sp. Harcht-Bsk1 0 29 203193 genus 1 Halobiforma lacisalsi 29 0 1 species 229731 2 genus 121871 56 0 Haloterrigena turkmenica 1 62320 species 41 0 Haloterrigena daqingensis 588898 species 1 0 15 0 13 2256 genus 1 1 44930 species 13 0 Natronobacterium gregoryi 0 75 genus 88723 2 1 2622230 no rank 42 0 1 species 406552 42 0 Natrinema sp. J7-2 69525 species 1 0 33 Natrinema pellirubrum 0 17 genus 63742 1 Natrialba magadii 17 0 1 13769 species 1 353799 genus 35 0 Halostagnicola larsenii 35 0 1 species 353800 order 2235 18 0 343 140 0 6 family 2236 0 94 2239 genus 3 no rank 2668073 1 0 16 1 species 751944 16 0 Halobacterium sp. DL1 28 0 1 species 2242 Halobacterium salinarum 50 0 1 1407499 species Halobacterium hubeiense genus 332246 1 0 21 0 21 413810 species 1 Halalkalicoccus jeotgali 1 genus 1980514 13 0 Halodesulfurarchaeum formicicum species 1873524 1 0 13 12 0 1 1656823 genus 0 12 1604004 species 1 Halanaeroarchaeum sulfurireducens Haloarculaceae 1 0 203 1963268 family 12 1 genus 2237 4 0 56 no rank 2624677 1 0 16 Haloarcula sp. CBA1115 species 1592728 1 0 16 Haloarcula hispanica 0 16 species 51589 1 Haloarcula marismortui 0 11 2238 species 1 Haloarcula taiwanensis 13 0 1 1932004 species 0 37 genus 1073987 1 1 2648975 no rank 37 0 0 37 species 1932360 1 Halorientalis sp. IM1011 Halorhabdus 3 1 146825 genus 45 0 6 Halorhabdus utahensis 21 0 1 species 146826 1 species 430914 18 0 Halorhabdus tiamatea genus 63743 2 0 36 0 15 2257 species 1 Natronomonas pharaonis 1 species 416273 21 0 Natronomonas moolapensis 1 genus 203135 28 0 28 0 1 species 57705 Halomicrobium mukohataei Haloferacales order 1644055 1 11 0 4 320 0 27 2678336 no rank 1 1 756883 species 27 0 halophilic archaeon DL31 1963271 family 4 0 134 0 55 genus 56688 2 Halorubrum trapanicum species 29284 1 0 29 Halorubrum lacusprofundi 1 species 2247 26 0 39 0 1 1644057 genus Salinigranum rubrum 39 0 1 species 755307 1 1209988 genus 40 0 Halopenitus persicus 1048396 species 1 0 40 0 155 1644056 family 5 0 7 60846 genus 1 7 0 1 species 60847 Halogeometricum borinquense 0 3 genus 293431 1 0 3 293091 species 1 Haloquadratum walsbyi 2251 genus 3 0 145 species 35746 1 0 61 Haloferax gibbonsii 1 2252 species 28 0 Haloferax mediterranei Haloferax volcanii 2246 species 1 0 56 clade 2283796 6 0 18 6 class 183967 18 0 0 3 order 1235850 1 0 3 2517203 family 1 1 genus 1291539 3 0 Candidatus Methanomethylophilus alvus 1 1291540 species 3 0 2301 order 4 0 11 0 1 46659 family 1 2302 genus 1 0 1 1 50339 species 1 0 Thermoplasma volcanium 9 0 1 2 1 1747776 family Cuniculiplasmataceae 8 0 1 genus 1747777 Cuniculiplasma divulgatum 1 1673428 species 8 0 1 0 1 no rank 1919231 species 1054217 1 0 1 Thermoplasmatales archaeon BRNA1 no rank 1234666 1 0 4 1 species 1495144 4 0 methanogenic archaeon ISO4-H5