Summary Report

Statistics from X0239_vs_combIVT_stats.txt

sites_considered genes_considered gmm_logit_3 gmm_logit_5 ks_int_3 ks_int_5 n_peaks fasta_peak_fn fasta_mod_fn
3090587 5259 9868 3990 74295 30389 4518 /pscratch/sd/m/mmingay/direct_rna_2024/april2024/jaws_postprocess/alyrata/root_X0239_vs_combIVT/X0239_vs_combIVT_nanocompore_peaks.fasta /pscratch/sd/m/mmingay/direct_rna_2024/april2024/jaws_postprocess/alyrata/root_X0239_vs_combIVT/X0239_vs_combIVT_nanocompore_mods.fasta

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Statistics from X0241_vs_combIVT_stats.txt

sites_considered genes_considered gmm_logit_3 gmm_logit_5 ks_int_3 ks_int_5 n_peaks fasta_peak_fn fasta_mod_fn
3161906 5205 10342 4448 75573 33183 4667 /pscratch/sd/m/mmingay/direct_rna_2024/april2024/jaws_postprocess/alyrata/shoot_X0241_vs_combIVT/X0241_vs_combIVT_nanocompore_peaks.fasta /pscratch/sd/m/mmingay/direct_rna_2024/april2024/jaws_postprocess/alyrata/shoot_X0241_vs_combIVT/X0241_vs_combIVT_nanocompore_mods.fasta

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Statistics from X0284vsX0241_stats.txt

sites_considered genes_considered gmm_logit_3 gmm_logit_5 ks_int_3 ks_int_5 n_peaks fasta_peak_fn fasta_mod_fn
714367 1150 2763 1071 20726 8507 1213 /pscratch/sd/m/mmingay/direct_rna_2024/april2024/jaws_postprocess/alyrata/shoot_X0284vsX0241/X0284vsX0241_nanocompore_peaks.fasta /pscratch/sd/m/mmingay/direct_rna_2024/april2024/jaws_postprocess/alyrata/shoot_X0284vsX0241/X0284vsX0241_nanocompore_mods.fasta

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Statistics from X0241vX0285_stats.txt

sites_considered genes_considered gmm_logit_3 gmm_logit_5 ks_int_3 ks_int_5 n_peaks fasta_peak_fn fasta_mod_fn
3402885 5447 6873 3665 47822 20988 3309 /pscratch/sd/m/mmingay/direct_rna_2024/april2024/jaws_postprocess/alyrata/shoot_X0241vX0285/X0241vX0285_nanocompore_peaks.fasta /pscratch/sd/m/mmingay/direct_rna_2024/april2024/jaws_postprocess/alyrata/shoot_X0241vX0285/X0241vX0285_nanocompore_mods.fasta

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Statistics from X0274_X0239_stats.txt

sites_considered genes_considered gmm_logit_3 gmm_logit_5 ks_int_3 ks_int_5 n_peaks fasta_peak_fn fasta_mod_fn
2839146 4757 9360 3704 70862 29030 4254 /pscratch/sd/m/mmingay/direct_rna_2024/april2024/jaws_postprocess/alyrata/root_X0274_X0239/X0274_X0239_nanocompore_peaks.fasta /pscratch/sd/m/mmingay/direct_rna_2024/april2024/jaws_postprocess/alyrata/root_X0274_X0239/X0274_X0239_nanocompore_mods.fasta

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Statistics from X0274_X0240_stats.txt

sites_considered genes_considered gmm_logit_3 gmm_logit_5 ks_int_3 ks_int_5 n_peaks fasta_peak_fn fasta_mod_fn
3237110 4938 10652 4426 78580 33116 4779 /pscratch/sd/m/mmingay/direct_rna_2024/april2024/jaws_postprocess/alyrata/root_X0274_X0240/X0274_X0240_nanocompore_peaks.fasta /pscratch/sd/m/mmingay/direct_rna_2024/april2024/jaws_postprocess/alyrata/root_X0274_X0240/X0274_X0240_nanocompore_mods.fasta

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