Index of /cfs/m342/jgi_usa/igvapp

• Parent Directory
• 300563_ICII.bam
• 300563_ICII.bam.bai
• AT1G69780_a_stringent_qe4peaks.narrowPeak
• Alyrata_384_v1.fa
• Alyrata_384_v2.1.gene_exons.gff3
• Athaliana_447_Araport11.gene_exons.gff3
• Athaliana_447_TAIR10.fa
• Athaliana_447_TAIR10.fa.fai
• Bdistachyon_314_v3.0.fa
• Bdistachyon_314_v3.0.fa.amb
• Bdistachyon_314_v3.0.fa.ann
• Bdistachyon_314_v3.0.fa.bwaindex.done
• Bdistachyon_314_v3.0.fa.bwt
• Bdistachyon_314_v3.0.fa.pac
• Bdistachyon_314_v3.0.fa.sa
• Bdistachyon_314_v3.1.gene_exons.gff3
• Chrzof1_AssemblyScaffolds.fasta
• Chrzof1_AssemblyScaffolds.fasta.fai
• Chrzof2_AssemblyScaffolds.fasta
• Chrzof2_AssemblyScaffolds.fasta.fai
• Chrzof2_GeneCatalog_20210118_remove_underscores.gff3
• Chrzof2_GeneCatalog_20210118_remove_underscores_sorted.gff3.gz
• Chrzof2_GeneCatalog_20210118_remove_underscores_sorted.gff3.gz.tbi
• GGCZX.12844.4.290052.GTCTTCC-GTCTTCC.filter-PLANT-2X250_peaks.narrowPeak
• GHWWZ_peaks.narrowPeak
• GHWXC.12925.4.298968.TAGGCATG-GCGTAAGA.filter-ATAC.srt.unq.md.bam
• GHWXC.12925.4.298968.TAGGCATG-GCGTAAGA.filter-ATAC.srt.unq.md.bw
• GHWXC_peaks.narrowPeak
• Hannuus_494_r1.0.fa
• Hannuus_494_r1.0.fa.fai
• Hannuus_494_r1.2.gene_exons.gff3
• Homo_sapiens.GRCh38.cdna.all.fa
• Homo_sapiens.GRCh38.cdna.all.fa.fai
• Homo_sapiens.GRCh38.cdna.rnamod35.fa
• Homo_sapiens.GRCh38.cdna.rnamod35.fa.fai
• JAUB.bam
• JAUC.bam
• JAUD.bam
• JAUE.bam
• JAUF.bam
• JAUG.bam
• JAUI.bam
• JAUJ.bam
• JAUK.bam
• JAUL.bam
• JAUM.bam
• JAUN.bam
• JAUP.bam
• JAUQ.bam
• JAUR.bam
• JAUS.bam
• JAUT.bam
• JAUU.bam
• JAUW.bam
• JAUX.bam
• JAUY.bam
• JAUZ.bam
• JAWA.bam
• JAWB.bam
• JAWC.bam
• JAWD.bam
• JAWE.bam
• JAWF.bam
• JAWG.bam
• JAWH.bam
• JAWI.bam
• JAWJ.bam
• JAWJ.bam.bai
• JAWK.bam
• JAWL.bam
• JAWM.bam
• JAWN.bam
• JAWP.bam
• JAWQ.bam
• JAWR.bam
• JAWS.bam
• JAWT.bam
• JAWU.bam
• JAWW.bam
• JAWX.bam
• JAWY.bam
• JAWZ.bam
• JAXA.bam
• JAXB.bam
• JAXC.bam
• JAXD.bam
• JAXE.bam
• JAXF.bam
• JAXG.bam
• JAXH.bam
• JAXI.bam
• JAXJ.bam
• JAXK.bam
• JAXL.bam
• JAXM.bam
• JAXN.bam
• JAXP.bam
• JAXQ.bam
• JAXR.bam
• JAXS.bam
• JAXT.bam
• JAXU.bam
• JAXW.bam
• JAXX.bam
• JAXY.bam
• JAXZ.bam
• JAYA.bam
• JAYB.bam
• JAYC.bam
• JAYD.bam
• JAYE.bam
• JAYF.bam
• JAYF.bam.bai
• JAYG.bam
• JAYH.bam
• JAYI.bam
• JAYJ.bam
• JAYK.bam
• JAYL.bam
• JAYM.bam
• JAYN.bam
• JAYP.bam
• JAYQ.bam
• JAYS.bam
• JAYT.bam
• JAYU.bam
• JAYW.bam
• JAYX.bam
• JAYY.bam
• NCrassa_chip_2021/
• Neucr2.filtered_proteins.BroadModels.gff3
• Neucr2_AssemblyScaffolds.fasta
• Phallii.041921.multisample.nooutlier.samtools_mpileup.flt.3X.GQ20-DP5.anno.vcf.gz
• Phallii.110920.multisample.nooutlier.cnvnator.bin.100.vcf.gz
• Phallii.110920.multisample.nooutlier.cnvnator.bin.100.vcf.gz.tbi
• Phallii.110920.multisample.nooutlier.cnvnator.bin.1000.vcf.gz
• Phallii.110920.multisample.nooutlier.cnvnator.bin.1000.vcf.gz.tbi
• Phallii.110920.multisample.nooutlier.delly.filter.vcf.gz
• Phallii.110920.multisample.nooutlier.pindel.vcf.gz
• Phallii.110920.multisample.nooutlier.pindel.vcf.gz.tbi
• Phallii.110920.multisample.nooutlier.samtools_mpileup.flt.3X.GQ20-DP5.anno.vcf.gz
• Phallii.110920.multisample.nooutlier.samtools_mpileup.flt.3X.GQ20-DP5.anno.vcf.gz.tbi
• Phallii_495_v3.0.fa
• Phallii_495_v3.0.fa.fai
• Phallii_495_v3.1.gene_exons.gff3
• Phallii_495_v3.1.gene_exons.gff3.sort.gz
• Phallii_495_v3.1.gene_exons.gff3.sort.gz.tbi
• SRR1811013_pass.srt.unq.md.bw
• SRR1811014_pass.srt.unq.md.bw
• SRR1811015_pass.srt.unq.md.bw
• SRR1811016_pass.srt.unq.md.bw
• SRR1811017_pass.srt.unq.md.bw
• SRR1811018_pass.srt.unq.md.bw
• SRR2926429_pass.srt.unq.md.bw
• Saccharomyces_cerevisiae.R64-1-1.98.gff3
• Saccharomyces_cerevisiae.R64-1-1.98.sorted.gff3.gz
• Saccharomyces_cerevisiae.R64-1-1.98.sorted.gff3.gz.tbi
• Saccharomyces_cerevisiae.R64-1-1.cdna.all.fa
• Saccharomyces_cerevisiae.R64-1-1.cdna.all.fa.fai
• Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa
• Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.amb
• Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.ann
• Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.bwt
• Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.fai
• Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.pac
• Saccharomyces_cerevisiae.R64-1-1.dna.toplevel.fa.sa
• create_sunflower_browser.sh
• custom_train_sorted.bed
• hg38.fa
• hg38.fa.fai
• human_drs_nobcall_txome.bam
• human_drs_nobcall_txome.bam.bai
• human_ivt_nobcall_txome.bam
• human_ivt_nobcall_txome.bam.bai
• ks01_logit05_30x_sigsites_chrpos.bedGraph
• ks05_logit05_30x_sigsites_chrpos.bedGraph
• logit05_30x_sigsites_chrpos.bedGraph
• rnamod_tracks/
• sunflower_atac_november/
• temp.bed
• temp.txt
• test_ZPAY_FE.signal.bw
• test_ZPAY_noctrl.narrowPeak
• test_ZPAY_treat_pileup.bw
• test_ZPAY_wctrl.narrowPeak
• variants_in_frip30_ath_peaks_sorted.bed
• yeast_m6a_peaks_supplemental.bedGraph