]> meme /global/cscratch1/sd/mmingay/direct_rna_2021/clustering/motifs/X0193_ctrlX0203_pseu_refpos/X0193_ctrlX0203_pseu_refpos_pad10_context.fa -oc /global/cscratch1/sd/mmingay/direct_rna_2021/clustering/motifs/X0193_ctrlX0203_pseu_refpos/meme_out_X0193_ctrlX0203_pseu_refpos_pad10/ -rna -maxsize 10000000 -mod zoops -nmotifs 5 -minw 4 -maxw 12 7e9ec6cde4d1 zoops 5 inf E-value of product of p-values 0 4 12 11 1 yes yes 2 841 0.8 uni 0.5 dirichlet 0.01 50 1e-05 841 16820 0 -1 -1 none Stopped because requested number of motifs (5) found. 0.239 0.171 0.196 0.394 23 -73 -75 34 -77 36 31 1 49 -1439 176 -1439 -1439 -1439 235 -1439 207 -1439 -1439 -1439 -1439 -361 -1439 132 -128 -110 -39 77 -159 -61 -69 80 -15 -1439 -87 78 -9 -38 34 1 2 -361 82 1 0.280374 0.102804 0.116822 0.500000 0.140187 0.219626 0.242991 0.397196 0.336449 0.000000 0.663551 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.014019 0.000000 0.985981 0.098131 0.079439 0.149533 0.672897 0.079439 0.112150 0.121495 0.686916 0.214953 0.000000 0.107477 0.677570 0.224299 0.130841 0.247664 0.397196 0.242991 0.014019 0.345794 0.397196 [UA][UGC][GA]GAUUU[UA][UGA][UGA] ATAC TTCTC AA TTAGGGA TAA TTAGGG GTAA TTAGG AA TTAGGGA TAA TTAGGG GTAA TTAGG TCTT AAAGA TTG AATCAG TTTG AATCA TTT TTTGTT ATTT TTTGT TCCA TCTTT TT TCATTAC CAG GCCAAG GCAG GCCAA TTTG TAAAT CGTG CAGAT AAA GTTGGT TAAA GTTGG TCG GATTGT GTCG GATTG TTTG AGTCA AAT TTTTCA CAAT TTTTC CCG TTTGTT CTT GTTTTT ACTT GTTTT AATT AAATA TAAAGAATT AATT AAATA TAAAGAATT CGTT CGGTT CGTT CGGTT C TACCAAAT AAC TACCAA GAAC TACCA GTTT CATTG ACTC TATCT ACTC TATCT ACTC TATCT CTC TATCTG ACTC TATCT ACTC TATCT ACTC TATCT TC TTTATTT ATC TTTATT AATC TTTAT GATT CTCTT CCTC TCTTC GGTT GAAAA GTTT GGATC AG GACATTG ATCT TATGA CATA AGATC TTT GTCGTC TGGT TTAGC TATG AGACT TATG AGACT TATG AGACT AG AGACTAT GTAG AGACT C CTCTTTTG TATC CTCTT C CTCTTTTG TATC CTCTT TATT TTTGT TATT TTTGT ATTG CCTAC TGTT TCAGT GCTG GGTTC TTGT GCTTC TTGT GCTTC CTTT TGAGC TTTTCTATC TTT TGAAGT TTTT TGAAG ATAT AGTGT TCT CCATAT ATCT CCATA T TCTCTGTT TTATGGTTT A TTATGGTT GAAA TTATG TTTCTCCCT CTTT TTTGG TTTA CAGTC G TTTTCTTG TTGG TTTTC ACCA TAATT AAGA TTTTT GGTGAAAGA ATGT TTTGT AAT GCTGTG TAAT GCTGT CTTT AGTTA TGGT GTTCA TATG TGAAA TAT GTTAAT GTAT GTTAA TTTT CGACG TGC TATTTC TTGC TATTT TC CATTAGC TGTG AGGGG TGTG AAGAG AGTA TGAAC AGTA TGAAC AGTA TGAAC TTTA TTCAT TATA CAGAC TGTA TTTTA TCAC TCTAA TGTT TTACT G CTTATGGT CT TATCCTT AAAT GCTAA C CGCAGCTT TTGTTCTCT TTTT GGCTT CTTG ATCCA CCTG GAAGA GCTT TGTTC AGC TATCAG CGCT GACAC TCCC TGACA TCTC CCTTT TCTC CCTTT TCTC CCTTT TCTC CCTTT TTTG AGGTC GTCT TGGAA CTCT TGGAA GATC ATTTT TTTT CTATG GC ATGTACG TT CTCTTTA GTTT CTCTT ATAT CTGTA ATAT CTGTA ATAT CTGTA TTGC AAACT CCAT ATTCT AATT ATGAA GTAA TTGTT CCGTAAACA AG AGCTGTG AT CACTTGT ACGC GAACG CAAT AAAAG CGAT ATATT TGTC GCTGG ACTA ATTAT TTGT TTGGA ATCG TTTTC CG TTTTCTT ATCG TTTTC GATTCCAC C CTAG ACTCG CTAG ACTCG CAGT TAAAG AAT ACCATT TAAT ACCAT TTTG TGGGA CTAT TATTT TATG GAACT TGAT CGGTT TTAT GAAGT AGAATGAAT AAAA AGATA AGTT GATTT CATT TTCCA AACT TTGGA ATGT CATAT TTTA GATGC AGTA AGCTT ATCA TTCTC ATGAAAGAT A AGGCCTCC TATCTTCAT TGTC GTGTT TGTC GTGTT TTGT GATTT GTTT AAATT AGGA TTTGT TCAATTTGC GGAC TCAAT TTTTGGAC T CCGGGTCAT TTTG GCTTT CCTC AAATG TTGA AGAAG CTCT GAGTA TCAG ACAGA AATATTATT GTTT AAGAC TCTG ATGAG AATA CAAAG T GTCTAGGT GTGC TGATT TCTT GTTCT TGTG GGATA GTTA ACACG TGAA AAAAT CAGA AAGAG GA GTTAACT T AATGTTAA CT GGACACT TGTT TAAAC AGCA TGTAT GGT ATGCTC TATGTACCT AA TGTGATA GCTCCATAT 166 -1267 33 -1267 147 -30 -50 -268 100 -1267 65 -87 95 128 -67 -1267 13 153 -167 -109 36 185 -1267 -236 -1267 -66 -167 108 -1267 -1267 -1267 134 -1267 -1267 -1267 134 -26 -1267 203 -1267 -64 128 -167 -9 -79 -1267 -35 84 0.753846 0.000000 0.246154 0.000000 0.661538 0.138462 0.138462 0.061538 0.476923 0.000000 0.307692 0.215385 0.461538 0.415385 0.123077 0.000000 0.261538 0.492308 0.061538 0.184615 0.307692 0.615385 0.000000 0.076923 0.000000 0.107692 0.061538 0.830769 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.200000 0.000000 0.800000 0.000000 0.153846 0.415385 0.061538 0.369231 0.138462 0.000000 0.153846 0.707692 [AG]A[AGU][AC][CA][CA]UUU[GA][CU]U A TCTTGCT AA TCTTGC AT CAGGAA AT CAGGAA TAT CAGGA C GCCTTTC TC GCCTTT TC GTTGTT TC GTTGTT CC TTCCTT TT CTGTAG TT TGTGTT AA ACTCGC TT ATTGTG TA TCTCAA ATC CGTCG AA TTTCAG TG ACGAAA GC GCACCT GC TATCTT GC CTACAT AC GGAAAC AA TTTGGT AG CACCAG TT GTTGCC GA GTAACA TT CCCACA TG CATAAC A TCCTACA GT GGTCTG GA AGTAAA CG TTCAAG GA CCAAGG CG AGGTCG AC TCAGTG T GGCGAGG TT TTATGA AG TCTGGA TAC ATCTA TAC ATCTA CA GGTAGA TTAT GGAT GA TGTTTG CT TTGCAC TC ACGATC G ACTTTGT AG TGTGAA AG GTTTTC CG TTTCTG TAAAA TCT TC GGGGAT TTC GGGGA GA AAGCAG A TGATGGC AG ATCTCC GT TTAATC TC TCTCTT AT GACGTG TG GATGGT TC CTTTTT C GTTTTAT TC TCGTTG GAGG CATG AT ACGTAT AC AGAGAC -1081 -1081 -182 126 -1081 38 -1081 98 -1081 38 -182 87 22 170 -1081 -124 198 -1081 -182 -1081 -1081 -1081 235 -1081 198 -162 -1081 -1081 -1081 255 -1081 -1081 160 -62 -1081 -124 -1081 -1081 -1081 134 -1081 -62 118 17 0.000000 0.000000 0.055556 0.944444 0.000000 0.222222 0.000000 0.777778 0.000000 0.222222 0.055556 0.722222 0.277778 0.555556 0.000000 0.166667 0.944444 0.000000 0.055556 0.000000 0.000000 0.000000 1.000000 0.000000 0.944444 0.055556 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.722222 0.111111 0.000000 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.111111 0.444444 0.444444 U[UC][UC][CA]AGACAU[GU] CTACTAAGT CTACTAAGT TTTCCTC CT CTACTAAGT GGTACTAGA AACCAAGGT AGCTTGT AA CTTGTGG CT GCTGAAATT CATCTT GCT CTCAAGCC T TGTGCTCAA GATCATTG T TTACCCGTC TTAATGAA C GAAGTCCTT TTTGTATTT ACTCCTTG G 117 143 -1035 -1035 -1035 -115 -35 96 95 -1035 146 -1035 -1035 -115 223 -1035 195 -115 -1035 -1035 -1035 -1035 -1035 134 -63 -1035 -1035 110 -1035 185 -1035 -3 117 143 -1035 -1035 -1035 -1035 -1035 134 -1035 255 -1035 -1035 0.538462 0.461538 0.000000 0.000000 0.000000 0.076923 0.153846 0.769231 0.461538 0.000000 0.538462 0.000000 0.000000 0.076923 0.923077 0.000000 0.923077 0.076923 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.153846 0.000000 0.000000 0.846154 0.000000 0.615385 0.000000 0.384615 0.538462 0.461538 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 [AC]U[GA]GAUU[CU][AC]UC TCTA GTGTG TCTA GTGTG GTGC TGTCA TGTG TGTTG TGTG TGTTG TCT TTTGGG ATAT AATAA ATAT AATAA ATGG TTGGA GACAATGG T CGT CCCGAA ACAA TGTCG GTC AACATC -1064 255 -1064 -1064 -1064 246 -1064 -265 65 136 -7 -1064 87 -1064 67 -66 -193 55 -1064 80 -93 187 35 -1064 39 13 -165 15 -1064 -1064 -1064 134 -1064 -1064 -1064 134 -93 -1064 -1064 115 7 -145 -1064 80 -1064 255 -1064 -1064 0.000000 1.000000 0.000000 0.000000 0.000000 0.937500 0.000000 0.062500 0.375000 0.437500 0.187500 0.000000 0.437500 0.000000 0.312500 0.250000 0.062500 0.250000 0.000000 0.687500 0.125000 0.625000 0.250000 0.000000 0.312500 0.187500 0.062500 0.437500 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.125000 0.000000 0.000000 0.875000 0.250000 0.062500 0.000000 0.687500 0.000000 1.000000 0.000000 0.000000 CC[CA][AGU][UC][CG][UA]UUU[UA]C ACAATGTG CGTTCCTC A CGTTCCT GAAGATCA G GATACAA CA CTTTTC TAACTGGT T TAACTGG TGCTTTTT TGCTTTTT TGGAAGCC ACTTCGAC AAAGCTTT GA GCCGGA CG ACGTCC A TTGGAAG