<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<!-- Document definition -->
<!DOCTYPE MEME[
<!ELEMENT MEME (
  training_set,
  model, 
  motifs, 
  scanned_sites_summary?
)>
<!ATTLIST MEME 
  version CDATA #REQUIRED
  release CDATA #REQUIRED
>
<!-- Training-set elements -->
<!ELEMENT training_set (alphabet, ambigs, sequence*, letter_frequencies)>
<!ATTLIST training_set primary_sequences CDATA #REQUIRED primary_count CDATA #REQUIRED primary_positions CDATA #REQUIRED
  control_sequences CDATA "" control_count CDATA "" control_positions CDATA "">
<!ELEMENT alphabet (letter*)>
<!ATTLIST alphabet name CDATA #REQUIRED>
<!ELEMENT ambigs (letter*)>
<!ELEMENT letter EMPTY>
<!ATTLIST letter id ID #REQUIRED>
<!ATTLIST letter symbol CDATA #REQUIRED>
<!ATTLIST letter equals CDATA #IMPLIED>
<!ATTLIST letter aliases CDATA #IMPLIED>
<!ATTLIST letter complement CDATA #IMPLIED>
<!ATTLIST letter name CDATA #IMPLIED>
<!ATTLIST letter colour CDATA #IMPLIED>
<!ELEMENT sequence EMPTY>
<!ATTLIST sequence id ID #REQUIRED
                   name CDATA #REQUIRED
                   length CDATA #REQUIRED
                   weight CDATA #REQUIRED
>
<!ELEMENT letter_frequencies (alphabet_array)>

<!-- Model elements -->
<!ELEMENT model (
  command_line,
  host,
  type,
  nmotifs,
  evalue_threshold,
  object_function,
  spfun,
  min_width,
  max_width,
  wg,
  ws,
  endgaps,
  minsites,
  maxsites,
  wnsites,
  spmap,
  spfuzz,
  prior,
  beta,
  maxiter,
  distance,
  num_positions,
  seed,
  hsfrac,
  searchsize,
  maxsize,
  norand,
  csites,
  strands,
  brief,
  psp_file,
  priors_file,
  reason_for_stopping,
  background_frequencies
)>
<!ELEMENT command_line (#PCDATA)*>
<!ELEMENT host (#PCDATA)*>
<!ELEMENT type (#PCDATA)*>
<!ELEMENT nmotifs (#PCDATA)*>
<!ELEMENT evalue_threshold (#PCDATA)*>
<!ELEMENT object_function (#PCDATA)*>
<!ELEMENT spfun (#PCDATA)*>
<!ELEMENT min_width (#PCDATA)*>
<!ELEMENT max_width (#PCDATA)*>
<!ELEMENT wg (#PCDATA)*>
<!ELEMENT ws (#PCDATA)*>
<!ELEMENT endgaps (#PCDATA)*>
<!ELEMENT minsites (#PCDATA)*>
<!ELEMENT maxsites (#PCDATA)*>
<!ELEMENT wnsites (#PCDATA)*>
<!ELEMENT spmap (#PCDATA)*>
<!ELEMENT spfuzz (#PCDATA)*>
<!ELEMENT prior (#PCDATA)*>
<!ELEMENT beta (#PCDATA)*>
<!ELEMENT maxiter (#PCDATA)*>
<!ELEMENT distance (#PCDATA)*>
<!ELEMENT num_positions (#PCDATA)*>
<!ELEMENT seed (#PCDATA)*>
<!ELEMENT hsfrac (#PCDATA)*>
<!ELEMENT searchsize (#PCDATA)*>
<!ELEMENT maxsize (#PCDATA)*>
<!ELEMENT norand (#PCDATA)*>
<!ELEMENT csites (#PCDATA)*>
<!ELEMENT strands (#PCDATA)*>
<!ELEMENT brief (#PCDATA)*>
<!ELEMENT psp_file (#PCDATA)*>
<!ELEMENT priors_file (#PCDATA)*>
<!ELEMENT reason_for_stopping (#PCDATA)*>
<!ELEMENT background_frequencies (alphabet_array)>
<!ATTLIST background_frequencies source CDATA #REQUIRED
		   order CDATA #REQUIRED>

<!-- Motif elements -->
<!ELEMENT motifs (motif*)>
<!ELEMENT motif (scores, probabilities, regular_expression?, contributing_sites)>
<!ATTLIST motif id ID #REQUIRED
                name CDATA #REQUIRED
                alt CDATA ""
                width CDATA #REQUIRED
                sites CDATA #REQUIRED
                ic CDATA #REQUIRED
                re CDATA #REQUIRED
                llr CDATA #REQUIRED
                p_value CDATA #REQUIRED
                e_value CDATA #REQUIRED
                bayes_threshold CDATA #REQUIRED
                elapsed_time CDATA #REQUIRED
                url CDATA ""
>
<!ELEMENT scores (alphabet_matrix)>
<!ELEMENT probabilities (alphabet_matrix)>
<!ELEMENT regular_expression (#PCDATA)*>

<!-- Contributing site elements -->
<!-- Contributing sites are motif occurences found during the motif discovery phase -->
<!ELEMENT contributing_sites (contributing_site*)>
<!ELEMENT contributing_site (left_flank, site, right_flank)>
<!ATTLIST contributing_site sequence_id IDREF #REQUIRED
                          position CDATA #REQUIRED
                          strand (plus|minus|none) 'none'
                          pvalue CDATA #REQUIRED
>
<!-- The left_flank contains the sequence for 10 bases to the left of the motif start -->
<!ELEMENT left_flank (#PCDATA)>
<!-- The site contains the sequence for the motif instance -->
<!ELEMENT site (letter_ref*)>
<!-- The right_flank contains the sequence for 10 bases to the right of the motif end -->
<!ELEMENT right_flank (#PCDATA)>

<!-- Scanned site elements -->
<!-- Scanned sites are motif occurences found during the sequence scan phase -->
<!ELEMENT scanned_sites_summary (scanned_sites*)>
<!ATTLIST scanned_sites_summary p_thresh CDATA #REQUIRED>
<!ELEMENT scanned_sites (scanned_site*)>
<!ATTLIST scanned_sites sequence_id IDREF #REQUIRED
                        pvalue CDATA #REQUIRED
                        num_sites CDATA #REQUIRED>
<!ELEMENT scanned_site EMPTY>
<!ATTLIST scanned_site  motif_id IDREF #REQUIRED
                        strand (plus|minus|none) 'none'
                        position CDATA #REQUIRED
                        pvalue CDATA #REQUIRED>

<!-- Utility elements -->
<!-- A reference to a letter in the alphabet -->
<!ELEMENT letter_ref EMPTY>
<!ATTLIST letter_ref letter_id IDREF #REQUIRED>
<!-- A alphabet-array contains one floating point value for each letter in an alphabet -->
<!ELEMENT alphabet_array (value*)>
<!ELEMENT value (#PCDATA)>
<!ATTLIST value letter_id IDREF #REQUIRED>

<!-- A alphabet_matrix contains one alphabet_array for each position in a motif -->
<!ELEMENT alphabet_matrix (alphabet_array*)>

]>
<!-- Begin document body -->
<MEME version="5.4.1" release="Sat Aug 21 19:23:23 2021 -0700">
<training_set primary_sequences="/global/cscratch1/sd/mmingay/direct_rna_2021/pseudo_dev/M_circi/neg_control_motifs/mlus_ks1e2_negControl_0_pad15_context.fa" primary_count="64" primary_positions="1920" control_sequences="--none--" control_count="0" control_positions="0">
<alphabet name="RNA" like="rna">
<letter id="A" symbol="A" name="Adenine" colour="CC0000"/>
<letter id="C" symbol="C" name="Cytosine" colour="0000CC"/>
<letter id="G" symbol="G" name="Guanine" colour="FFB300"/>
<letter id="U" symbol="U" aliases="T" name="Uracil" colour="008000"/>
<letter id="N" symbol="N" aliases="X." equals="ACGU" name="Any base"/>
<letter id="V" symbol="V" equals="ACG" name="Not U"/>
<letter id="H" symbol="H" equals="ACU" name="Not G"/>
<letter id="D" symbol="D" equals="AGU" name="Not C"/>
<letter id="B" symbol="B" equals="CGU" name="Not A"/>
<letter id="M" symbol="M" equals="AC" name="Amino"/>
<letter id="R" symbol="R" equals="AG" name="Purine"/>
<letter id="W" symbol="W" equals="AU" name="Weak"/>
<letter id="S" symbol="S" equals="CG" name="Strong"/>
<letter id="Y" symbol="Y" equals="CU" name="Pyrimidine"/>
<letter id="K" symbol="K" equals="GU" name="Keto"/>
</alphabet>
<sequence id="sequence_0" name="Ml1542304:604-634" length="30" weight="1.000000" />
<sequence id="sequence_1" name="Ml1542304:621-651" length="30" weight="1.000000" />
<sequence id="sequence_2" name="Ml1542304:610-640" length="30" weight="1.000000" />
<sequence id="sequence_3" name="Ml1541919:475-505" length="30" weight="1.000000" />
<sequence id="sequence_4" name="Ml1537459:1803-1833" length="30" weight="1.000000" />
<sequence id="sequence_5" name="Ml1537459:1858-1888" length="30" weight="1.000000" />
<sequence id="sequence_6" name="Ml1537459:1903-1933" length="30" weight="1.000000" />
<sequence id="sequence_7" name="Ml1537459:1929-1959" length="30" weight="1.000000" />
<sequence id="sequence_8" name="Ml1530181:63-93" length="30" weight="1.000000" />
<sequence id="sequence_9" name="Ml1530181:188-218" length="30" weight="1.000000" />
<sequence id="sequence_10" name="Ml1530181:245-275" length="30" weight="1.000000" />
<sequence id="sequence_11" name="Ml1530181:280-310" length="30" weight="1.000000" />
<sequence id="sequence_12" name="Ml1530181:287-317" length="30" weight="1.000000" />
<sequence id="sequence_13" name="Ml1530181:290-320" length="30" weight="1.000000" />
<sequence id="sequence_14" name="Ml1530181:347-377" length="30" weight="1.000000" />
<sequence id="sequence_15" name="Ml1530181:348-378" length="30" weight="1.000000" />
<sequence id="sequence_16" name="Ml1530181:349-379" length="30" weight="1.000000" />
<sequence id="sequence_17" name="Ml1530181:381-411" length="30" weight="1.000000" />
<sequence id="sequence_18" name="Ml1530181:382-412" length="30" weight="1.000000" />
<sequence id="sequence_19" name="Ml1530181:65-95" length="30" weight="1.000000" />
<sequence id="sequence_20" name="Ml1530181:187-217" length="30" weight="1.000000" />
<sequence id="sequence_21" name="Ml1530181:244-274" length="30" weight="1.000000" />
<sequence id="sequence_22" name="Ml1530181:277-307" length="30" weight="1.000000" />
<sequence id="sequence_23" name="Ml1530181:361-391" length="30" weight="1.000000" />
<sequence id="sequence_24" name="Ml1530181:362-392" length="30" weight="1.000000" />
<sequence id="sequence_25" name="Ml1517804:143-173" length="30" weight="1.000000" />
<sequence id="sequence_26" name="Ml1467948:496-526" length="30" weight="1.000000" />
<sequence id="sequence_27" name="Ml1370810:1715-1745" length="30" weight="1.000000" />
<sequence id="sequence_28" name="Ml1370810:1752-1782" length="30" weight="1.000000" />
<sequence id="sequence_29" name="Ml1370810:1887-1917" length="30" weight="1.000000" />
<sequence id="sequence_30" name="Ml1334763:1443-1473" length="30" weight="1.000000" />
<sequence id="sequence_31" name="Ml1334763:1569-1599" length="30" weight="1.000000" />
<sequence id="sequence_32" name="Ml1334763:1602-1632" length="30" weight="1.000000" />
<sequence id="sequence_33" name="Ml1045898:5143-5173" length="30" weight="1.000000" />
<sequence id="sequence_34" name="Ml1045898:4827-4857" length="30" weight="1.000000" />
<sequence id="sequence_35" name="Ml1045898:4876-4906" length="30" weight="1.000000" />
<sequence id="sequence_36" name="Ml1045898:4935-4965" length="30" weight="1.000000" />
<sequence id="sequence_37" name="Ml1045898:4961-4991" length="30" weight="1.000000" />
<sequence id="sequence_38" name="Ml1045898:4971-5001" length="30" weight="1.000000" />
<sequence id="sequence_39" name="Ml1045898:4978-5008" length="30" weight="1.000000" />
<sequence id="sequence_40" name="Ml1045898:4994-5024" length="30" weight="1.000000" />
<sequence id="sequence_41" name="Ml1045898:5003-5033" length="30" weight="1.000000" />
<sequence id="sequence_42" name="Ml1045898:5033-5063" length="30" weight="1.000000" />
<sequence id="sequence_43" name="Ml1045898:5036-5066" length="30" weight="1.000000" />
<sequence id="sequence_44" name="Ml1045898:5044-5074" length="30" weight="1.000000" />
<sequence id="sequence_45" name="Ml1045898:5061-5091" length="30" weight="1.000000" />
<sequence id="sequence_46" name="Ml1045898:5064-5094" length="30" weight="1.000000" />
<sequence id="sequence_47" name="Ml1045898:5067-5097" length="30" weight="1.000000" />
<sequence id="sequence_48" name="Ml1045898:5073-5103" length="30" weight="1.000000" />
<sequence id="sequence_49" name="Ml1045898:5079-5109" length="30" weight="1.000000" />
<sequence id="sequence_50" name="Ml1045898:5084-5114" length="30" weight="1.000000" />
<sequence id="sequence_51" name="Ml1045898:5095-5125" length="30" weight="1.000000" />
<sequence id="sequence_52" name="Ml1045898:5104-5134" length="30" weight="1.000000" />
<sequence id="sequence_53" name="Ml1045898:5108-5138" length="30" weight="1.000000" />
<sequence id="sequence_54" name="Ml1045898:5119-5149" length="30" weight="1.000000" />
<sequence id="sequence_55" name="Ml1045898:5148-5178" length="30" weight="1.000000" />
<sequence id="sequence_56" name="Ml1045898:5154-5184" length="30" weight="1.000000" />
<sequence id="sequence_57" name="Ml1045898:5164-5194" length="30" weight="1.000000" />
<sequence id="sequence_58" name="Ml1045898:5165-5195" length="30" weight="1.000000" />
<sequence id="sequence_59" name="Ml1045898:5168-5198" length="30" weight="1.000000" />
<sequence id="sequence_60" name="Ml1045898:5174-5204" length="30" weight="1.000000" />
<sequence id="sequence_61" name="Ml1045898:5214-5244" length="30" weight="1.000000" />
<sequence id="sequence_62" name="Ml1045898:5247-5277" length="30" weight="1.000000" />
<sequence id="sequence_63" name="Ml1045898:5269-5299" length="30" weight="1.000000" />
<letter_frequencies>
<alphabet_array>
<value letter_id="A">0.261</value>
<value letter_id="C">0.265</value>
<value letter_id="G">0.157</value>
<value letter_id="U">0.318</value>
</alphabet_array>
</letter_frequencies>
</training_set>
<model>
<command_line>meme /global/cscratch1/sd/mmingay/direct_rna_2021/pseudo_dev/M_circi/neg_control_motifs/mlus_ks1e2_negControl_0_pad15_context.fa -oc /global/cscratch1/sd/mmingay/direct_rna_2021/pseudo_dev/M_circi/neg_control_motifs/meme_out_mlus_ks1e2_negControl_0_pad15/ -rna -maxsize 10000000 -mod zoops -nmotifs 5 -minw 4 -maxw 15 -p 2 </command_line>
<host>buildkitsandbox</host>
<type>zoops</type>
<nmotifs>5</nmotifs>
<evalue_threshold>inf</evalue_threshold>
<object_function>E-value of product of p-values</object_function>
<spfun>E-value of product of p-values</spfun>
<min_width>4</min_width>
<max_width>15</max_width>
<wg>11</wg>
<ws>1</ws>
<endgaps>yes</endgaps>
<substring>yes</substring>
<minsites>2</minsites>
<maxsites>64</maxsites>
<wnsites>0.8</wnsites>
<spmap>uni</spmap>
<spfuzz>0.5</spfuzz>
<prior>dirichlet</prior>
<beta>0.01</beta>
<maxiter>50</maxiter>
<distance>1e-05</distance>
<num_positions>1920</num_positions>
<seed>0</seed>
<hsfrac>0</hsfrac>
<searchsize>1920</searchsize>
<maxsize>10000000</maxsize>
<norand>no</norand>
<csites>1000</csites>
<strands>none</strands>
<brief>1000</brief>
<psp_file></psp_file>
<priors_file></priors_file>
<reason_for_stopping>Stopped because requested number of motifs (5) found.</reason_for_stopping>
<background_frequencies source="--sequences--" order="0">
<alphabet_array>
<value letter_id="A">0.261</value>
<value letter_id="C">0.265</value>
<value letter_id="G">0.157</value>
<value letter_id="U">0.318</value>
</alphabet_array>
</background_frequencies>
</model>
<motifs>
<motif id="motif_1" name="ACMGMKRVURYCMAD" alt="MEME-1" width="15" sites="16" ic="16.0" re="16.6" llr="184" p_value="4.6e-053" e_value="4.1e-019" bayes_threshold="5.11085" elapsed_time="0.969742">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">175</value>
<value letter_id="C">-1064</value>
<value letter_id="G">-33</value>
<value letter_id="U">-1064</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1064</value>
<value letter_id="C">150</value>
<value letter_id="G">67</value>
<value letter_id="U">-1064</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">126</value>
<value letter_id="C">50</value>
<value letter_id="G">-1064</value>
<value letter_id="U">-1064</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1064</value>
<value letter_id="C">-8</value>
<value letter_id="G">226</value>
<value letter_id="U">-1064</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">75</value>
<value letter_id="C">73</value>
<value letter_id="G">-33</value>
<value letter_id="U">-1064</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-106</value>
<value letter_id="C">-1064</value>
<value letter_id="G">126</value>
<value letter_id="U">65</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">94</value>
<value letter_id="C">-1064</value>
<value letter_id="G">126</value>
<value letter_id="U">-134</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-6</value>
<value letter_id="C">92</value>
<value letter_id="G">67</value>
<value letter_id="U">-1064</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-106</value>
<value letter_id="C">-1064</value>
<value letter_id="G">-1064</value>
<value letter_id="U">146</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">26</value>
<value letter_id="C">-1064</value>
<value letter_id="G">199</value>
<value letter_id="U">-234</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1064</value>
<value letter_id="C">124</value>
<value letter_id="G">-1064</value>
<value letter_id="U">24</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1064</value>
<value letter_id="C">192</value>
<value letter_id="G">-1064</value>
<value letter_id="U">-1064</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">52</value>
<value letter_id="C">124</value>
<value letter_id="G">-1064</value>
<value letter_id="U">-1064</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">194</value>
<value letter_id="C">-1064</value>
<value letter_id="G">-1064</value>
<value letter_id="U">-1064</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-6</value>
<value letter_id="C">-1064</value>
<value letter_id="G">99</value>
<value letter_id="U">46</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">0.875000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.125000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.750000</value>
<value letter_id="G">0.250000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.625000</value>
<value letter_id="C">0.375000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.250000</value>
<value letter_id="G">0.750000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.437500</value>
<value letter_id="C">0.437500</value>
<value letter_id="G">0.125000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.125000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.375000</value>
<value letter_id="U">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.500000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.375000</value>
<value letter_id="U">0.125000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.250000</value>
<value letter_id="C">0.500000</value>
<value letter_id="G">0.250000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.125000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.875000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.312500</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.625000</value>
<value letter_id="U">0.062500</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.625000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.375000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">1.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.375000</value>
<value letter_id="C">0.625000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">1.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.250000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.312500</value>
<value letter_id="U">0.437500</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
A[CG][AC][GC][AC][UG][AG][CAG]U[GA][CU]C[CA]A[UGA]
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_44" position="2" strand="none" pvalue="2.03e-07" >
<left_flank>CC</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>AAGCCATCTG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_43" position="10" strand="none" pvalue="2.03e-07" >
<left_flank>TGCTCAACCC</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>AAGCC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_42" position="13" strand="none" pvalue="2.03e-07" >
<left_flank>TGCTCAACCC</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>AA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_22" position="13" strand="none" pvalue="2.25e-07" >
<left_flank>GTGGACTTAC</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
</site>
<right_flank>GA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_13" position="0" strand="none" pvalue="2.25e-07" >
<left_flank></left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
</site>
<right_flank>GATCTCGTGA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_12" position="3" strand="none" pvalue="2.25e-07" >
<left_flank>TAC</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
</site>
<right_flank>GATCTCGTGA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_11" position="10" strand="none" pvalue="2.25e-07" >
<left_flank>GTGGACTTAC</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
</site>
<right_flank>GATCT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_48" position="3" strand="none" pvalue="2.91e-06" >
<left_flank>GCA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TCCACTGCTT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_47" position="9" strand="none" pvalue="2.91e-06" >
<left_flank>TCTGAGGCA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TCCACT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_46" position="12" strand="none" pvalue="2.91e-06" >
<left_flank>ATCTGAGGCA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TCC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_45" position="15" strand="none" pvalue="2.91e-06" >
<left_flank>ATCTGAGGCA</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank></right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_29" position="13" strand="none" pvalue="3.46e-06" >
<left_flank>CAAAAGTACC</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
</site>
<right_flank>CC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_20" position="8" strand="none" pvalue="1.38e-05" >
<left_flank>AGTAGGCT</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
</site>
<right_flank>TGGTCAT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_9" position="7" strand="none" pvalue="1.38e-05" >
<left_flank>GTAGGCT</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
</site>
<right_flank>TGGTCATG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_39" position="2" strand="none" pvalue="1.94e-05" >
<left_flank>CT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>CCAACCCCTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_38" position="9" strand="none" pvalue="1.94e-05" >
<left_flank>CCTAGCACT</left_flank>
<site>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>CCAACC</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_2" name="UUYUUYUUAUCWUUD" alt="MEME-2" width="15" sites="16" ic="19.2" re="15.8" llr="175" p_value="2.1e-049" e_value="1.9e-015" bayes_threshold="5.97728" elapsed_time="1.390503">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">-1064</value>
<value letter_id="C">-1064</value>
<value letter_id="G">-1064</value>
<value letter_id="U">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-106</value>
<value letter_id="C">-1064</value>
<value letter_id="G">-1064</value>
<value letter_id="U">146</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1064</value>
<value letter_id="C">73</value>
<value letter_id="G">-133</value>
<value letter_id="U">65</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1064</value>
<value letter_id="C">24</value>
<value letter_id="G">-1064</value>
<value letter_id="U">111</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1064</value>
<value letter_id="C">-1064</value>
<value letter_id="G">-1064</value>
<value letter_id="U">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-206</value>
<value letter_id="C">24</value>
<value letter_id="G">-1064</value>
<value letter_id="U">98</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1064</value>
<value letter_id="C">-1064</value>
<value letter_id="G">-1064</value>
<value letter_id="U">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-48</value>
<value letter_id="C">-1064</value>
<value letter_id="G">-1064</value>
<value letter_id="U">135</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">175</value>
<value letter_id="C">-1064</value>
<value letter_id="G">-1064</value>
<value letter_id="U">-134</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1064</value>
<value letter_id="C">-108</value>
<value letter_id="G">-1064</value>
<value letter_id="U">146</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1064</value>
<value letter_id="C">138</value>
<value letter_id="G">26</value>
<value letter_id="U">-134</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">94</value>
<value letter_id="C">-1064</value>
<value letter_id="G">-1064</value>
<value letter_id="U">65</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-6</value>
<value letter_id="C">-108</value>
<value letter_id="G">-1064</value>
<value letter_id="U">98</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-1064</value>
<value letter_id="C">-1064</value>
<value letter_id="G">-1064</value>
<value letter_id="U">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">52</value>
<value letter_id="C">-1064</value>
<value letter_id="G">99</value>
<value letter_id="U">-2</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.125000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.875000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.437500</value>
<value letter_id="G">0.062500</value>
<value letter_id="U">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.312500</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.687500</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.062500</value>
<value letter_id="C">0.312500</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.625000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.187500</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.812500</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.875000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.125000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.125000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.875000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.687500</value>
<value letter_id="G">0.187500</value>
<value letter_id="U">0.125000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.500000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.250000</value>
<value letter_id="C">0.125000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.625000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.375000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.312500</value>
<value letter_id="U">0.312500</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
UU[UC][UC]U[UC]UUAUC[AU][UA]U[AGU]
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_60" position="1" strand="none" pvalue="9.05e-08" >
<left_flank>C</left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TCAACACTGT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_59" position="7" strand="none" pvalue="9.05e-08" >
<left_flank>AATATCC</left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TCAACACT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_58" position="10" strand="none" pvalue="9.05e-08" >
<left_flank>TATAATATCC</left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TCAAC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_57" position="11" strand="none" pvalue="9.05e-08" >
<left_flank>TATAATATCC</left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TCAA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_24" position="1" strand="none" pvalue="1.46e-06" >
<left_flank>G</left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>CTCAAATCTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_23" position="2" strand="none" pvalue="1.46e-06" >
<left_flank>GG</left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>CTCAAATCTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_16" position="14" strand="none" pvalue="1.46e-06" >
<left_flank>ATAGTGTTGG</left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>C</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_15" position="15" strand="none" pvalue="1.46e-06" >
<left_flank>ATAGTGTTGG</left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
</site>
<right_flank></right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_54" position="0" strand="none" pvalue="4.24e-06" >
<left_flank></left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
</site>
<right_flank>CTTATACACA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_53" position="11" strand="none" pvalue="4.24e-06" >
<left_flank>CCTCGCCCCC</left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
</site>
<right_flank>CTTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_52" position="15" strand="none" pvalue="4.24e-06" >
<left_flank>CCTCGCCCCC</left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
</site>
<right_flank></right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_0" position="0" strand="none" pvalue="1.47e-05" >
<left_flank></left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>AAAAAAGACA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_7" position="12" strand="none" pvalue="2.20e-05" >
<left_flank>ATACAAGTTT</left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
</site>
<right_flank>TCG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_31" position="0" strand="none" pvalue="2.92e-05" >
<left_flank></left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
</site>
<right_flank>GCTGCATACG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_55" position="4" strand="none" pvalue="3.19e-05" >
<left_flank>CTTA</left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TAATATCCTT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_33" position="9" strand="none" pvalue="3.19e-05" >
<left_flank>ATCAACTTA</left_flank>
<site>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TAATAT</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_3" name="GUAKRGUGUWR" alt="MEME-3" width="11" sites="5" ic="18.1" re="19.5" llr="67" p_value="8.4e-016" e_value="2.0e-002" bayes_threshold="8.2468" elapsed_time="1.775104">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">-897</value>
<value letter_id="C">-897</value>
<value letter_id="G">267</value>
<value letter_id="U">-897</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-897</value>
<value letter_id="C">-897</value>
<value letter_id="G">-897</value>
<value letter_id="U">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">194</value>
<value letter_id="C">-897</value>
<value letter_id="G">-897</value>
<value letter_id="U">-897</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-897</value>
<value letter_id="C">-897</value>
<value letter_id="G">135</value>
<value letter_id="U">92</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">120</value>
<value letter_id="C">-897</value>
<value letter_id="G">135</value>
<value letter_id="U">-897</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-897</value>
<value letter_id="C">-897</value>
<value letter_id="G">267</value>
<value letter_id="U">-897</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-897</value>
<value letter_id="C">-897</value>
<value letter_id="G">-897</value>
<value letter_id="U">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-897</value>
<value letter_id="C">-897</value>
<value letter_id="G">267</value>
<value letter_id="U">-897</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-897</value>
<value letter_id="C">-897</value>
<value letter_id="G">-897</value>
<value letter_id="U">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">62</value>
<value letter_id="C">-897</value>
<value letter_id="G">-897</value>
<value letter_id="U">92</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">62</value>
<value letter_id="C">-897</value>
<value letter_id="G">193</value>
<value letter_id="U">-897</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">1.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">1.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.400000</value>
<value letter_id="U">0.600000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.600000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.400000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">1.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">1.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.400000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.600000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.400000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.600000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
GUA[UG][AG]GUGU[UA][GA]
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_16" position="2" strand="none" pvalue="4.09e-07" >
<left_flank>TT</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>GTTTCTCTTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_15" position="3" strand="none" pvalue="4.09e-07" >
<left_flank>TTT</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>GTTTCTCTTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_14" position="4" strand="none" pvalue="4.09e-07" >
<left_flank>GTTT</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
</site>
<right_flank>GTTTCTCTTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_21" position="9" strand="none" pvalue="8.18e-07" >
<left_flank>CCGACGAGA</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>ACCCTATGAT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_10" position="8" strand="none" pvalue="8.18e-07" >
<left_flank>CGACGAGA</left_flank>
<site>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>ACCCTATGAT</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_4" name="CYGARGMA" alt="MEME-4" width="8" sites="9" ic="12.3" re="13.3" llr="83" p_value="1.3e-024" e_value="6.3e-002" bayes_threshold="7.47988" elapsed_time="2.191758">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">-982</value>
<value letter_id="C">192</value>
<value letter_id="G">-982</value>
<value letter_id="U">-982</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-982</value>
<value letter_id="C">75</value>
<value letter_id="G">-982</value>
<value letter_id="U">81</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-982</value>
<value letter_id="C">-982</value>
<value letter_id="G">267</value>
<value letter_id="U">-982</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">194</value>
<value letter_id="C">-982</value>
<value letter_id="G">-982</value>
<value letter_id="U">-982</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">109</value>
<value letter_id="C">-982</value>
<value letter_id="G">150</value>
<value letter_id="U">-982</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-982</value>
<value letter_id="C">-25</value>
<value letter_id="G">231</value>
<value letter_id="U">-982</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">135</value>
<value letter_id="C">33</value>
<value letter_id="G">-982</value>
<value letter_id="U">-982</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">194</value>
<value letter_id="C">-982</value>
<value letter_id="G">-982</value>
<value letter_id="U">-982</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">1.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.444444</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.555556</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">1.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">1.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.555556</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.444444</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.000000</value>
<value letter_id="C">0.222222</value>
<value letter_id="G">0.777778</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">0.666667</value>
<value letter_id="C">0.333333</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">1.000000</value>
<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
C[UC]GA[AG][GC][AC]A
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_36" position="22" strand="none" pvalue="1.06e-05" >
<left_flank>ACAACAACAA</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank></right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_41" position="2" strand="none" pvalue="2.83e-05" >
<left_flank>TA</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>GTTCCAACTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_40" position="11" strand="none" pvalue="2.83e-05" >
<left_flank>CCAACCCCTA</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>GTTCCAACTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_37" position="20" strand="none" pvalue="2.83e-05" >
<left_flank>CCTAGCACTA</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>AC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_47" position="1" strand="none" pvalue="3.91e-05" >
<left_flank>T</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>AGCCCTGCTG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_46" position="4" strand="none" pvalue="3.91e-05" >
<left_flank>CCAT</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>AGCCCTGCTG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_45" position="7" strand="none" pvalue="3.91e-05" >
<left_flank>AAGCCAT</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>AGCCCTGCTG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_63" position="0" strand="none" pvalue="1.05e-04" >
<left_flank></left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank>TCATTAAAAA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_62" position="22" strand="none" pvalue="1.05e-04" >
<left_flank>GCAAAATCGA</left_flank>
<site>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
</site>
<right_flank></right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_5" name="CACUGCYYARUUSYC" alt="MEME-5" width="15" sites="4" ic="25.0" re="24.1" llr="67" p_value="3.4e-011" e_value="1.4e+000" bayes_threshold="7.99435" elapsed_time="2.574007">
<scores>
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<alphabet_array>
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<value letter_id="C">192</value>
<value letter_id="G">-865</value>
<value letter_id="U">-865</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">-865</value>
<value letter_id="G">-865</value>
<value letter_id="U">-865</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-865</value>
<value letter_id="C">192</value>
<value letter_id="G">-865</value>
<value letter_id="U">-865</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-865</value>
<value letter_id="C">-865</value>
<value letter_id="G">-865</value>
<value letter_id="U">165</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">-865</value>
<value letter_id="G">267</value>
<value letter_id="U">-865</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-865</value>
<value letter_id="C">192</value>
<value letter_id="G">-865</value>
<value letter_id="U">-865</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-865</value>
<value letter_id="C">92</value>
<value letter_id="G">-865</value>
<value letter_id="U">65</value>
</alphabet_array>
<alphabet_array>
<value letter_id="A">-865</value>
<value letter_id="C">92</value>
<value letter_id="G">-865</value>
<value letter_id="U">65</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">-865</value>
<value letter_id="G">-865</value>
<value letter_id="U">-865</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">-865</value>
<value letter_id="G">167</value>
<value letter_id="U">-865</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">-865</value>
<value letter_id="G">-865</value>
<value letter_id="U">165</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">-865</value>
<value letter_id="G">-865</value>
<value letter_id="U">165</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">92</value>
<value letter_id="G">167</value>
<value letter_id="U">-865</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">92</value>
<value letter_id="G">-865</value>
<value letter_id="U">65</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">192</value>
<value letter_id="G">-865</value>
<value letter_id="U">-865</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
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<value letter_id="C">1.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">1.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">0.000000</value>
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</alphabet_array>
<alphabet_array>
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<value letter_id="C">0.000000</value>
<value letter_id="G">1.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="G">0.000000</value>
<value letter_id="U">0.500000</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">0.500000</value>
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<value letter_id="U">0.500000</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">0.000000</value>
<value letter_id="G">0.000000</value>
<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
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<value letter_id="C">0.000000</value>
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<value letter_id="U">0.000000</value>
</alphabet_array>
<alphabet_array>
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</alphabet_array>
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</alphabet_array>
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<value letter_id="U">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
CACUGC[CU][CU]A[AG]UU[CG][CU]C
</regular_expression>
<contributing_sites>
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<site>
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<letter_ref letter_id="A"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
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</contributing_site>
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<site>
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<letter_ref letter_id="U"/>
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<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
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<letter_ref letter_id="C"/>
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</contributing_site>
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<left_flank>TGCCCAATC</left_flank>
<site>
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<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
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<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
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<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
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</contributing_site>
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<left_flank>CTGCCCAATC</left_flank>
<site>
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<letter_ref letter_id="A"/>
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<letter_ref letter_id="U"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="A"/>
<letter_ref letter_id="G"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="U"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
<letter_ref letter_id="C"/>
</site>
<right_flank>T</right_flank>
</contributing_site>
</contributing_sites>
</motif>
</motifs>
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</scanned_sites>
<scanned_sites sequence_id="sequence_59" pvalue="2.12e-03" num_sites="1"><scanned_site motif_id="motif_2" strand="none" position="7" pvalue="9.05e-08"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_60" pvalue="1.65e-03" num_sites="1"><scanned_site motif_id="motif_2" strand="none" position="1" pvalue="9.05e-08"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_61" pvalue="6.38e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_62" pvalue="1.34e-02" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_63" pvalue="8.35e-02" num_sites="0"></scanned_sites>
</scanned_sites_summary>
</MEME>
