SnpEff: Variant analysis

Contents Summary
Variant rate by chromosome
Variants by type
Number of variants by impact
Number of variants by functional class
Number of variants by effect
Quality histogram
InDel length histogram
Base variant table
Transition vs transversions (ts/tv)
Allele frequency
Allele Count
Codon change table
Amino acid change table
Chromosome variants plots
Details by gene

Summary

Genome osativa7.0

Date 2020-01-10 09:59

SnpEff version
SnpEff 4.0e (build 2014-09-13), by Pablo Cingolani

Command line arguments
SnpEff -classic -no-upstream -no-downstream -s ron.osativ.FN36.nip.011020.multisample.samtools_mpileup.flt.3X.anno.vcf.snpEff_summary.html osativa7.0 ron.osativ.FN36.nip.011020.multisample.samtools_mpileup.flt.3X.vcf.gz

Warnings 7,195

Errors 0

Number of lines (input file) 522,557

Number of variants (before filter) 530,052

Number of not variants
(i.e. reference equals alternative) 0

Number of variants processed
(i.e. after filter and non-variants) 530,052

Number of known variants
(i.e. non-empty ID) 0 ( 0% )

Number of multi-allelic VCF entries
(i.e. more than two alleles) 7,324

Number of effects 1,472,394

Genome total length 374,471,240

Genome effective length 374,471,240

Variant rate 1 variant every 706 bases

Variants rate details

Chromosome Length Variants Variants rate

1 43,270,923 47,131 918

2 35,937,250 58,356 615

3 36,413,819 34,599 1,052

4 35,502,694 56,615 627

5 29,958,434 22,188 1,350

6 31,248,787 52,960 590

7 29,697,621 44,479 667

8 28,443,022 43,566 652

9 23,012,720 30,827 746

10 23,207,287 25,416 913

11 29,021,106 64,908 447

12 27,531,856 42,919 641

Sy 592,136 1,970 300

Un 633,585 4,118 153

Total 374,471,240 530,052 706

Chromosome	Length	Variants	Variants rate
1	43,270,923	47,131	918
2	35,937,250	58,356	615
3	36,413,819	34,599	1,052
4	35,502,694	56,615	627
5	29,958,434	22,188	1,350
6	31,248,787	52,960	590
7	29,697,621	44,479	667
8	28,443,022	43,566	652
9	23,012,720	30,827	746
10	23,207,287	25,416	913
11	29,021,106	64,908	447
12	27,531,856	42,919	641
Sy	592,136	1,970	300
Un	633,585	4,118	153
Total	374,471,240	530,052	706

Number variantss by type

Type Total

SNP 430,080

MNP 0

INS 51,056

DEL 48,916

MIXED 0

INTERVAL 0

Total 530,052

Type	Total
SNP	430,080
MNP	0
INS	51,056
DEL	48,916
MIXED	0
INTERVAL	0
Total	530,052

Number of effects by impact

Type (alphabetical order) Count Percent

HIGH 6,169 0.419%

LOW 45,839 3.113%

MODERATE 54,907 3.729%

MODIFIER 1,365,479 92.739%

Type (alphabetical order)	Count	Percent
HIGH	6,169	0.419%
LOW	45,839	3.113%
MODERATE	54,907	3.729%
MODIFIER	1,365,479	92.739%

Number of effects by functional class

Type (alphabetical order) Count Percent

MISSENSE 53,194 54.458%

NONSENSE 2,007 2.055%

SILENT 42,478 43.487%

Type (alphabetical order)	Count	Percent
MISSENSE	53,194	54.458%
NONSENSE	2,007	2.055%
SILENT	42,478	43.487%

Missense / Silent ratio: 1.2523

Number of effects by type and region

Type Region

Type (alphabetical order) Count Percent

CODON_CHANGE_PLUS_CODON_DELETION 396 0.027%

CODON_CHANGE_PLUS_CODON_INSERTION 284 0.019%

CODON_DELETION 569 0.039%

CODON_INSERTION 985 0.067%

DOWNSTREAM 453,046 30.769%

FRAME_SHIFT 2,971 0.202%

FRAME_SHIFT+START_LOST 28 0.002%

FRAME_SHIFT+STOP_GAINED 45 0.003%

FRAME_SHIFT+STOP_LOST 30 0.002%

INTERGENIC 337,642 22.931%

INTRAGENIC 53 0.004%

INTRON 95,540 6.489%

NON_SYNONYMOUS_CODING 52,673 3.577%

NON_SYNONYMOUS_START 51 0.003%

SPLICE_SITE_ACCEPTOR 282 0.019%

SPLICE_SITE_DONOR 305 0.021%

SPLICE_SITE_REGION 2,667 0.181%

START_GAINED 643 0.044%

START_LOST 174 0.012%

START_LOST+CODON_CHANGE_PLUS_CODON_DELETION 1 0%

START_LOST+CODON_CHANGE_PLUS_CODON_INSERTION 1 0%

START_LOST+CODON_DELETION 2 0%

START_LOST+CODON_INSERTION 3 0%

STOP_GAINED 2,007 0.136%

STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION 1 0%

STOP_GAINED+CODON_CHANGE_PLUS_CODON_INSERTION 12 0.001%

STOP_GAINED+CODON_INSERTION 4 0%

STOP_LOST 296 0.02%

STOP_LOST+CODON_CHANGE_PLUS_CODON_INSERTION 2 0%

STOP_LOST+CODON_DELETION 4 0%

STOP_LOST+CODON_INSERTION 1 0%

SYNONYMOUS_CODING 42,424 2.881%

SYNONYMOUS_STOP 54 0.004%

UPSTREAM 460,612 31.283%

UTR_3_PRIME 9,298 0.631%

UTR_5_PRIME 9,288 0.631%

Type (alphabetical order) Count Percent

DOWNSTREAM 453,046 30.769%

EXON 102,786 6.981%

INTERGENIC 337,642 22.931%

INTRON 95,540 6.489%

NONE 53 0.004%

SPLICE_SITE_ACCEPTOR 282 0.019%

SPLICE_SITE_DONOR 305 0.021%

SPLICE_SITE_REGION 2,667 0.181%

TRANSCRIPT 232 0.016%

UPSTREAM 460,612 31.283%

UTR_3_PRIME 9,298 0.631%

UTR_5_PRIME 9,931 0.674%

Quality:

	
		 Min 3  
		 Max 999  
		 Mean 707.178  
		 Median 999  
		 Standard deviation 407.519  
		 Values 3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159,160,161,162,163,164,165,166,167,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187,188,189,190,191,192,193,194,195,196,197,198,199,200,201,202,203,204,205,206,207,208,209,210,211,212,213,214,215,216,217,218,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233,234,235,236,237,238,239,240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255,256,257,258,259,260,261,262,263,264,265,266,267,268,269,270,271,272,273,274,275,276,277,278,279,280,281,282,283,284,285,286,287,288,289,290,291,292,293,294,295,296,297,298,299,300,301,302,303,304,305,306,307,308,309,310,311,312,313,314,315,316,317,318,319,320,321,322,323,324,325,326,327,328,329,330,331,332,333,334,335,336,337,338,339,340,341,342,343,344,345,346,347,348,349,350,351,352,353,354,355,356,357,358,359,360,361,362,363,364,365,366,367,368,369,370,371,372,373,374,375,376,377,378,379,380,381,382,383,384,385,386,387,388,389,390,391,392,393,394,395,396,397,398,399,400,401,402,403,404,405,406,407,408,409,410,411,412,413,414,415,416,417,418,419,420,421,422,423,424,425,426,427,428,429,430,431,432,433,434,435,436,437,438,439,440,441,442,443,444,445,446,447,448,449,450,451,452,453,454,455,456,457,458,459,460,461,462,463,464,465,466,467,468,469,470,471,472,473,474,475,476,477,478,479,480,481,482,483,484,485,486,487,488,489,490,491,492,493,494,495,496,497,498,499,500,501,502,503,504,505,506,507,508,509,510,511,512,513,514,515,516,517,518,519,520,521,522,523,524,525,526,527,528,529,530,531,532,533,534,535,536,537,538,539,540,541,542,543,544,545,546,547,548,549,550,551,552,553,554,555,556,557,558,559,560,561,562,563,564,565,566,567,568,569,570,571,572,573,574,575,576,577,578,579,580,581,582,583,584,585,586,587,588,589,590,591,592,593,594,595,596,597,598,599,600,601,602,603,604,605,606,607,608,609,610,611,612,613,614,615,616,617,618,619,620,621,622,623,624,625,626,627,628,629,630,631,632,633,634,635,636,637,638,639,640,641,642,643,644,645,646,647,648,649,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689,690,691,692,693,694,695,696,697,698,699,700,701,702,703,704,705,706,707,708,709,710,711,712,713,714,715,716,717,718,719,720,721,722,723,724,725,726,727,728,729,730,731,732,733,734,735,736,737,738,739,740,741,742,743,744,745,746,747,748,749,750,751,752,753,754,755,756,757,758,759,760,761,762,763,764,765,766,767,768,769,770,771,772,773,774,775,776,777,778,779,780,781,782,783,784,785,786,787,788,789,790,791,792,793,794,795,796,797,798,799,800,801,802,803,804,805,806,807,808,809,810,811,812,813,814,815,816,817,818,819,820,821,822,823,824,825,826,827,828,829,830,831,832,833,834,835,836,837,838,839,840,841,842,843,844,845,846,847,848,849,850,851,852,853,854,855,856,857,858,859,860,861,862,863,864,865,866,867,868,869,870,871,872,873,874,875,876,877,878,879,880,881,882,883,884,885,886,887,888,889,890,891,892,893,894,895,896,897,898,899,900,901,902,903,904,905,906,907,908,909,910,911,912,913,914,915,916,917,918,919,920,921,922,923,924,925,926,927,928,929,930,931,932,933,934,935,936,937,938,939,940,941,942,943,944,945,946,947,948,949,950,951,952,953,954,955,956,957,958,959,960,961,962,963,964,965,966,967,968,969,970,971,972,973,974,975,976,977,978,979,980,981,982,983,984,985,986,987,988,989,990,991,992,993,994,995,996,997,998,999  
		 Count 4129,4361,2983,3282,2928,2158,1996,1887,1788,1801,1608,1591,1573,1468,1765,1344,1282,1266,1281,1199,1144,1191,1147,1136,1107,1091,1012,1018,998,987,999,932,926,823,870,826,824,888,828,768,806,778,720,805,766,728,762,291,669,711,699,676,664,645,659,648,606,633,598,593,616,579,599,556,545,557,551,519,518,543,533,538,500,489,483,511,463,511,479,520,474,473,495,447,471,429,479,463,427,443,441,434,389,432,445,432,393,399,393,414,405,351,408,401,409,392,410,367,385,367,359,358,361,376,357,381,342,336,362,354,316,358,354,324,329,318,345,340,318,305,338,322,311,356,289,336,327,296,274,325,329,306,317,317,304,295,281,279,310,297,300,280,278,298,273,271,287,287,305,312,285,301,275,234,243,266,247,260,271,262,303,255,266,214,247,267,239,267,272,238,227,242,260,1195,316,252,263,240,245,223,242,251,249,245,234,264,222,235,249,226,259,232,242,198,212,236,442,821,206,181,193,175,203,187,205,183,206,210,183,194,190,195,189,197,156,189,168,183,186,178,193,168,175,180,193,181,182,170,183,182,180,185,174,175,164,133,173,177,180,157,171,147,173,173,163,150,146,172,160,151,183,168,160,154,179,183,171,164,177,164,147,144,169,137,168,167,152,143,143,166,178,143,156,146,140,156,143,175,138,135,156,142,129,147,149,155,131,156,133,146,135,128,127,140,147,159,124,148,124,122,128,144,149,124,126,136,124,151,156,141,130,130,124,145,122,138,136,133,134,126,133,118,137,168,137,133,104,141,130,130,132,126,128,127,132,130,132,133,116,124,138,138,122,124,141,121,138,126,137,128,126,135,110,119,119,114,120,128,120,128,112,123,113,114,111,102,114,105,102,117,111,117,120,112,125,132,102,106,99,109,108,111,101,102,103,116,111,109,140,109,123,102,107,124,125,103,128,102,106,127,113,96,99,102,97,122,119,93,131,125,80,96,92,109,126,129,137,122,96,115,87,110,112,86,96,106,106,77,95,94,107,120,96,109,100,84,109,89,84,106,119,83,111,128,100,88,99,109,99,99,105,90,98,99,95,102,95,91,101,89,92,95,75,106,98,81,82,110,98,89,87,83,90,93,77,90,71,85,79,103,88,92,84,81,74,98,83,97,97,89,89,83,82,94,91,85,92,99,85,90,72,83,81,90,71,99,106,92,82,84,86,105,85,73,76,85,91,77,103,90,72,71,82,89,87,89,95,88,70,75,90,67,76,73,95,74,82,90,85,70,75,78,86,86,83,68,84,88,65,65,76,93,68,79,81,85,66,92,78,77,63,69,78,80,85,85,73,87,69,56,74,69,64,103,65,56,86,71,73,86,89,69,59,74,76,85,89,69,68,79,66,65,67,61,69,70,79,78,63,80,84,88,82,67,77,74,74,52,59,69,66,72,74,61,51,68,55,66,79,67,55,64,78,57,61,75,85,67,68,59,79,71,51,72,59,72,66,65,71,66,68,76,66,63,68,66,59,68,69,69,57,46,69,66,69,60,77,82,72,64,46,56,71,81,47,70,59,51,71,56,64,54,57,65,60,61,64,66,64,63,58,64,76,59,57,63,61,55,78,54,65,71,61,64,61,60,60,62,61,60,63,64,68,65,69,72,53,62,71,78,53,58,59,62,51,58,67,72,70,64,55,51,79,62,59,58,53,52,49,66,58,55,43,59,48,69,66,67,70,64,58,58,47,64,51,53,61,56,53,57,52,58,69,57,47,53,44,54,51,62,58,53,45,56,43,48,39,63,51,54,59,53,47,52,58,62,50,55,59,56,60,62,41,45,49,51,55,56,71,51,45,59,47,43,58,42,62,54,44,55,50,50,57,53,56,49,43,46,53,44,46,64,44,51,49,39,56,58,53,34,54,55,60,57,52,68,55,41,51,47,39,54,65,63,46,55,57,62,41,55,43,62,45,51,54,46,56,54,52,56,44,57,55,51,39,52,52,54,43,46,39,47,60,48,47,56,56,47,47,45,50,50,50,42,57,45,47,51,47,62,49,66,41,43,53,45,55,49,43,37,50,46,50,51,43,60,56,39,47,30,45,61,38,45,42,56,49,53,36,67,40,54,56,42,46,44,46,40,42,49,52,34,46,50,57,37,40,44,37,60,51,45,30,44,41,47,41,37,37,55,44,40,55,51,51,36,60,39,56,40,43,39,48,38,50,38,32,30,49,46,48,54,61,39,49,45,30,31,40,32,35,40,35,49,45,33,49,39,38,43,44,42,36,39,42,44,327085

Min	3
Max	999
Mean	707.178
Median	999
Standard deviation	407.519
Values	3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159,160,161,162,163,164,165,166,167,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187,188,189,190,191,192,193,194,195,196,197,198,199,200,201,202,203,204,205,206,207,208,209,210,211,212,213,214,215,216,217,218,219,220,221,222,223,224,225,226,227,228,229,230,231,232,233,234,235,236,237,238,239,240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255,256,257,258,259,260,261,262,263,264,265,266,267,268,269,270,271,272,273,274,275,276,277,278,279,280,281,282,283,284,285,286,287,288,289,290,291,292,293,294,295,296,297,298,299,300,301,302,303,304,305,306,307,308,309,310,311,312,313,314,315,316,317,318,319,320,321,322,323,324,325,326,327,328,329,330,331,332,333,334,335,336,337,338,339,340,341,342,343,344,345,346,347,348,349,350,351,352,353,354,355,356,357,358,359,360,361,362,363,364,365,366,367,368,369,370,371,372,373,374,375,376,377,378,379,380,381,382,383,384,385,386,387,388,389,390,391,392,393,394,395,396,397,398,399,400,401,402,403,404,405,406,407,408,409,410,411,412,413,414,415,416,417,418,419,420,421,422,423,424,425,426,427,428,429,430,431,432,433,434,435,436,437,438,439,440,441,442,443,444,445,446,447,448,449,450,451,452,453,454,455,456,457,458,459,460,461,462,463,464,465,466,467,468,469,470,471,472,473,474,475,476,477,478,479,480,481,482,483,484,485,486,487,488,489,490,491,492,493,494,495,496,497,498,499,500,501,502,503,504,505,506,507,508,509,510,511,512,513,514,515,516,517,518,519,520,521,522,523,524,525,526,527,528,529,530,531,532,533,534,535,536,537,538,539,540,541,542,543,544,545,546,547,548,549,550,551,552,553,554,555,556,557,558,559,560,561,562,563,564,565,566,567,568,569,570,571,572,573,574,575,576,577,578,579,580,581,582,583,584,585,586,587,588,589,590,591,592,593,594,595,596,597,598,599,600,601,602,603,604,605,606,607,608,609,610,611,612,613,614,615,616,617,618,619,620,621,622,623,624,625,626,627,628,629,630,631,632,633,634,635,636,637,638,639,640,641,642,643,644,645,646,647,648,649,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689,690,691,692,693,694,695,696,697,698,699,700,701,702,703,704,705,706,707,708,709,710,711,712,713,714,715,716,717,718,719,720,721,722,723,724,725,726,727,728,729,730,731,732,733,734,735,736,737,738,739,740,741,742,743,744,745,746,747,748,749,750,751,752,753,754,755,756,757,758,759,760,761,762,763,764,765,766,767,768,769,770,771,772,773,774,775,776,777,778,779,780,781,782,783,784,785,786,787,788,789,790,791,792,793,794,795,796,797,798,799,800,801,802,803,804,805,806,807,808,809,810,811,812,813,814,815,816,817,818,819,820,821,822,823,824,825,826,827,828,829,830,831,832,833,834,835,836,837,838,839,840,841,842,843,844,845,846,847,848,849,850,851,852,853,854,855,856,857,858,859,860,861,862,863,864,865,866,867,868,869,870,871,872,873,874,875,876,877,878,879,880,881,882,883,884,885,886,887,888,889,890,891,892,893,894,895,896,897,898,899,900,901,902,903,904,905,906,907,908,909,910,911,912,913,914,915,916,917,918,919,920,921,922,923,924,925,926,927,928,929,930,931,932,933,934,935,936,937,938,939,940,941,942,943,944,945,946,947,948,949,950,951,952,953,954,955,956,957,958,959,960,961,962,963,964,965,966,967,968,969,970,971,972,973,974,975,976,977,978,979,980,981,982,983,984,985,986,987,988,989,990,991,992,993,994,995,996,997,998,999
Count	4129,4361,2983,3282,2928,2158,1996,1887,1788,1801,1608,1591,1573,1468,1765,1344,1282,1266,1281,1199,1144,1191,1147,1136,1107,1091,1012,1018,998,987,999,932,926,823,870,826,824,888,828,768,806,778,720,805,766,728,762,291,669,711,699,676,664,645,659,648,606,633,598,593,616,579,599,556,545,557,551,519,518,543,533,538,500,489,483,511,463,511,479,520,474,473,495,447,471,429,479,463,427,443,441,434,389,432,445,432,393,399,393,414,405,351,408,401,409,392,410,367,385,367,359,358,361,376,357,381,342,336,362,354,316,358,354,324,329,318,345,340,318,305,338,322,311,356,289,336,327,296,274,325,329,306,317,317,304,295,281,279,310,297,300,280,278,298,273,271,287,287,305,312,285,301,275,234,243,266,247,260,271,262,303,255,266,214,247,267,239,267,272,238,227,242,260,1195,316,252,263,240,245,223,242,251,249,245,234,264,222,235,249,226,259,232,242,198,212,236,442,821,206,181,193,175,203,187,205,183,206,210,183,194,190,195,189,197,156,189,168,183,186,178,193,168,175,180,193,181,182,170,183,182,180,185,174,175,164,133,173,177,180,157,171,147,173,173,163,150,146,172,160,151,183,168,160,154,179,183,171,164,177,164,147,144,169,137,168,167,152,143,143,166,178,143,156,146,140,156,143,175,138,135,156,142,129,147,149,155,131,156,133,146,135,128,127,140,147,159,124,148,124,122,128,144,149,124,126,136,124,151,156,141,130,130,124,145,122,138,136,133,134,126,133,118,137,168,137,133,104,141,130,130,132,126,128,127,132,130,132,133,116,124,138,138,122,124,141,121,138,126,137,128,126,135,110,119,119,114,120,128,120,128,112,123,113,114,111,102,114,105,102,117,111,117,120,112,125,132,102,106,99,109,108,111,101,102,103,116,111,109,140,109,123,102,107,124,125,103,128,102,106,127,113,96,99,102,97,122,119,93,131,125,80,96,92,109,126,129,137,122,96,115,87,110,112,86,96,106,106,77,95,94,107,120,96,109,100,84,109,89,84,106,119,83,111,128,100,88,99,109,99,99,105,90,98,99,95,102,95,91,101,89,92,95,75,106,98,81,82,110,98,89,87,83,90,93,77,90,71,85,79,103,88,92,84,81,74,98,83,97,97,89,89,83,82,94,91,85,92,99,85,90,72,83,81,90,71,99,106,92,82,84,86,105,85,73,76,85,91,77,103,90,72,71,82,89,87,89,95,88,70,75,90,67,76,73,95,74,82,90,85,70,75,78,86,86,83,68,84,88,65,65,76,93,68,79,81,85,66,92,78,77,63,69,78,80,85,85,73,87,69,56,74,69,64,103,65,56,86,71,73,86,89,69,59,74,76,85,89,69,68,79,66,65,67,61,69,70,79,78,63,80,84,88,82,67,77,74,74,52,59,69,66,72,74,61,51,68,55,66,79,67,55,64,78,57,61,75,85,67,68,59,79,71,51,72,59,72,66,65,71,66,68,76,66,63,68,66,59,68,69,69,57,46,69,66,69,60,77,82,72,64,46,56,71,81,47,70,59,51,71,56,64,54,57,65,60,61,64,66,64,63,58,64,76,59,57,63,61,55,78,54,65,71,61,64,61,60,60,62,61,60,63,64,68,65,69,72,53,62,71,78,53,58,59,62,51,58,67,72,70,64,55,51,79,62,59,58,53,52,49,66,58,55,43,59,48,69,66,67,70,64,58,58,47,64,51,53,61,56,53,57,52,58,69,57,47,53,44,54,51,62,58,53,45,56,43,48,39,63,51,54,59,53,47,52,58,62,50,55,59,56,60,62,41,45,49,51,55,56,71,51,45,59,47,43,58,42,62,54,44,55,50,50,57,53,56,49,43,46,53,44,46,64,44,51,49,39,56,58,53,34,54,55,60,57,52,68,55,41,51,47,39,54,65,63,46,55,57,62,41,55,43,62,45,51,54,46,56,54,52,56,44,57,55,51,39,52,52,54,43,46,39,47,60,48,47,56,56,47,47,45,50,50,50,42,57,45,47,51,47,62,49,66,41,43,53,45,55,49,43,37,50,46,50,51,43,60,56,39,47,30,45,61,38,45,42,56,49,53,36,67,40,54,56,42,46,44,46,40,42,49,52,34,46,50,57,37,40,44,37,60,51,45,30,44,41,47,41,37,37,55,44,40,55,51,51,36,60,39,56,40,43,39,48,38,50,38,32,30,49,46,48,54,61,39,49,45,30,31,40,32,35,40,35,49,45,33,49,39,38,43,44,42,36,39,42,44,327085

Insertions and deletions length:

	
		 Min 0  
		 Max 46  
		 Mean 2.235  
		 Median 1  
		 Standard deviation 4.161  
		 Values 0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46  
		 Count 17610,59384,4608,4687,1605,2577,935,1507,820,911,501,879,337,500,290,373,158,376,139,252,181,227,112,161,91,108,77,80,70,81,35,63,30,39,19,34,27,15,13,16,10,6,6,11,7,1,3

Base changes (SNPs)

A C G T

A 0 22,191 68,239 19,471

C 16,956 0 12,827 75,572

G 75,087 12,495 0 17,601

T 19,301 68,640 21,700 0

	A	C	G	T
A	0	22,191	68,239	19,471
C	16,956	0	12,827	75,572
G	75,087	12,495	0	17,601
T	19,301	68,640	21,700	0

Ts/Tv (transitions / transversions)

Note: Only SNPs are used for this statistic.
Note: This Ts/Tv ratio is a 'raw' ratio (ratio of observed events).

Transitions	28,011,120
Transversions	11,849,149
Ts/Tv ratio	2.364

All variants:

Sample ,Kitaake_Xa21_sample_A,Kitaake_Xa21_sample_B,FN_ubi-XA21_5-4,FN_ubi-XA21,FN3848-S,FN3849-S,FN3850-S,FN3851-S,FN3852-S,FN3853-S,FN3854-S,FN3855-S,FN3856-S,FN3857-S,FN3858-S,FN3859-S,FN3860-S,FN3861-S,FN3862-S,FN3863-S,FN3864-S,FN3865-S,FN3866-S,FN3867-S,FN3868-S,FN3869-S,FN3871-S,FN3872-S,FN3875-S,FN3877-S,FN3879-S,FN3880-S,FN3881-S,FN3883-S,FN3885-S,FN3886-S,FN3887-S,FN3888-S,FN3889-S,FN3890-S,FN3892-S,FN3893-S,FN3896-S,FN3897-S,FN3899-S,FN3900-S,FN3901-S,FN3902-S,FN3903-S,FN3905-S,FN3906-S,FN3909-S,FN3910-S,FN3911-S,FN3912-S,FN3913-S,FN3914-S,FN3915-S,FN3916-S,FN3917-S,FN3918-S,FN3919-S,FN3920-S,FN3921-S,FN3923-S,FN3924-S,FN3925-S,FN3926-S,FN3927-S,FN3928-S,FN3930-S,FN3932-S,FN3933-S,FN3934-S,FN3935-S,FN3937-S,FN3938-S,FN3939-S,FN3940-S,Total
Transitions ,382932,382410,370747,365473,356299,354813,346764,356378,354945,353796,348655,357788,351252,353909,352445,349095,355865,347592,351811,352588,357043,354215,349357,351193,342739,351984,352572,349362,356035,355587,361401,356377,348002,352037,359272,348996,359529,360945,349878,364652,350545,355263,351666,360946,350617,349832,353038,352833,356350,352333,342155,352660,344296,349400,348023,358372,352407,348373,354190,355057,349412,358090,354955,348330,351017,356597,364686,364601,362557,355973,357811,345564,353748,356186,359239,350168,350199,351682,355216,28011120
Transversions ,167812,167371,159760,157146,150373,149909,146686,150754,149897,149557,146965,151294,148055,149542,148636,147129,150380,147027,148231,148472,151066,149557,147170,148467,144154,148533,148836,147492,150527,149747,153144,150040,146935,148673,152064,147137,152250,152860,147688,154778,148035,150203,148590,152961,147702,147599,149382,148793,150544,148752,144163,149032,145221,147698,146893,151596,148746,147019,149497,150032,147622,151779,149739,146933,147865,150843,154227,154877,153570,150072,151287,145831,149558,150567,151641,147981,147853,148330,150002,11849149
Ts/Tv ,2.282,2.285,2.321,2.326,2.369,2.367,2.364,2.364,2.368,2.366,2.372,2.365,2.372,2.367,2.371,2.373,2.366,2.364,2.373,2.375,2.363,2.368,2.374,2.365,2.378,2.370,2.369,2.369,2.365,2.375,2.360,2.375,2.368,2.368,2.363,2.372,2.361,2.361,2.369,2.356,2.368,2.365,2.367,2.360,2.374,2.370,2.363,2.371,2.367,2.369,2.373,2.366,2.371,2.366,2.369,2.364,2.369,2.370,2.369,2.367,2.367,2.359,2.370,2.371,2.374,2.364,2.365,2.354,2.361,2.372,2.365,2.370,2.365,2.366,2.369,2.366,2.369,2.371,2.368,2.364

Only known variants (i.e. the ones having a non-empty ID field):

No results available (empty input?)

Allele frequency

Min	0
Max	100
Mean	69.84
Median	100
Standard deviation	39.057
Values	0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100
Count	8476,17005,9659,12881,6004,8596,6789,3673,5385,2897,4515,2352,3696,3396,2056,3038,1991,2639,2524,1476,2472,1557,2302,1402,1979,2299,1262,1923,1279,1872,1175,1780,1809,1069,1674,1000,1716,1861,978,1810,1056,1797,1028,2093,2260,1351,3243,2772,3802,2424,11482,2058,986,1508,719,1271,1200,699,1197,610,1156,644,1253,1122,686,1141,838,1093,1088,651,1185,737,1103,678,1010,1428,770,1061,772,1042,937,1171,1152,1425,1246,974,1299,1727,939,1452,1363,1917,1421,2401,2946,2285,4321,3416,7503,6230,271151

Allele Count

Min	1
Max	158
Mean	92.474
Median	101
Standard deviation	64.038
Values	1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158
Count	8817,13488,9525,15727,8171,11756,6106,9792,4688,6994,3729,5705,3258,4806,2792,4284,2448,3775,2152,3426,1996,3202,1838,2880,1714,2690,1538,2467,1429,2398,1343,2239,1342,2165,1317,2048,1212,2072,1154,1960,1061,1817,1045,1766,1053,1722,1046,1682,1004,1708,989,1635,929,1573,951,1536,992,1526,992,1581,983,1587,1036,1629,1032,1546,1034,1697,1219,1751,1282,1973,1594,2422,2899,2551,2084,3065,9816,2148,1252,1594,1132,1442,833,1359,799,1261,753,1210,706,1185,741,1136,665,1131,656,1100,631,1158,620,1082,608,1082,588,1060,594,1099,548,1018,557,1059,537,1002,518,1053,572,1069,541,1088,554,1072,528,1081,502,1124,548,1101,538,1232,548,1223,591,1270,590,1390,634,1485,668,1571,708,1664,770,1842,840,2032,970,2513,1163,3011,1417,3719,1871,5214,2573,9710,4721,182131

Hom/Het per sample

Sample_names , Kitaake_Xa21_sample_A, Kitaake_Xa21_sample_B, FN_ubi-XA21_5-4, FN_ubi-XA21, FN3848-S, FN3849-S, FN3850-S, FN3851-S, FN3852-S, FN3853-S, FN3854-S, FN3855-S, FN3856-S, FN3857-S, FN3858-S, FN3859-S, FN3860-S, FN3861-S, FN3862-S, FN3863-S, FN3864-S, FN3865-S, FN3866-S, FN3867-S, FN3868-S, FN3869-S, FN3871-S, FN3872-S, FN3875-S, FN3877-S, FN3879-S, FN3880-S, FN3881-S, FN3883-S, FN3885-S, FN3886-S, FN3887-S, FN3888-S, FN3889-S, FN3890-S, FN3892-S, FN3893-S, FN3896-S, FN3897-S, FN3899-S, FN3900-S, FN3901-S, FN3902-S, FN3903-S, FN3905-S, FN3906-S, FN3909-S, FN3910-S, FN3911-S, FN3912-S, FN3913-S, FN3914-S, FN3915-S, FN3916-S, FN3917-S, FN3918-S, FN3919-S, FN3920-S, FN3921-S, FN3923-S, FN3924-S, FN3925-S, FN3926-S, FN3927-S, FN3928-S, FN3930-S, FN3932-S, FN3933-S, FN3934-S, FN3935-S, FN3937-S, FN3938-S, FN3939-S, FN3940-S
Reference , 138296, 137748, 135031, 133842, 106746, 106635, 104386, 106209, 105718, 106462, 104497, 107839, 104734, 105448, 105559, 104822, 105713, 105256, 104639, 105205, 107526, 105806, 104350, 105930, 103704, 104978, 104465, 104227, 105314, 105494, 107515, 105350, 104886, 105041, 106484, 104285, 106862, 106772, 104756, 108540, 105348, 106782, 105062, 107440, 104531, 104898, 105619, 104847, 106034, 105025, 104686, 106049, 104784, 104290, 104353, 107190, 105599, 105202, 106495, 105857, 105506, 106603, 105157, 104278, 105387, 106144, 111059, 108927, 107519, 106476, 106805, 104770, 104830, 106105, 106652, 105545, 104935, 105380, 106369
Het , 68844, 69034, 69149, 69077, 84114, 83765, 82543, 84301, 83931, 83705, 82383, 83640, 82731, 83944, 82845, 82732, 83415, 82132, 83892, 83788, 83522, 83805, 82243, 82862, 80948, 82916, 83207, 82419, 83868, 83421, 83452, 83809, 82633, 82502, 83425, 82401, 83626, 83670, 82321, 82831, 83026, 83192, 82675, 83581, 83161, 82802, 84009, 83031, 83150, 83282, 80654, 83273, 81412, 82696, 82798, 83922, 83619, 81957, 83255, 83947, 82326, 83668, 83321, 81727, 82834, 83487, 82442, 82650, 83228, 84206, 83999, 81727, 83394, 83802, 83484, 82903, 82786, 83264, 84133
Hom , 288389, 287880, 278577, 274317, 265059, 263723, 258416, 265061, 264138, 263033, 260060, 266683, 262048, 263210, 262990, 259927, 265774, 259239, 261564, 262017, 266189, 263693, 261292, 261625, 255857, 262995, 263724, 261317, 266057, 265717, 270149, 266085, 259365, 263470, 268926, 260982, 268671, 269977, 261888, 273642, 260966, 265097, 263276, 269825, 261222, 260735, 262383, 263736, 266553, 262366, 255558, 262752, 256647, 260724, 259256, 267075, 262238, 260338, 263906, 264132, 260812, 267312, 265427, 261039, 261679, 266423, 272459, 273788, 271609, 264347, 266322, 257946, 264569, 265322, 268350, 260799, 261024, 261732, 263624
Missing , 27028, 27895, 39800, 45321, 66638, 68434, 77212, 66986, 68770, 69357, 75617, 64395, 73044, 69955, 71163, 75076, 67655, 75930, 72462, 71547, 65320, 69253, 74672, 72140, 82048, 71668, 71161, 74594, 67318, 67925, 61441, 67313, 75673, 71544, 63722, 74889, 63398, 62138, 73592, 57544, 73217, 67486, 71544, 61711, 73643, 74122, 70546, 70943, 66820, 71884, 81659, 70483, 79714, 74847, 76150, 64370, 71101, 75060, 68901, 68621, 73913, 64974, 68652, 75513, 72657, 66503, 56597, 57192, 60201, 67528, 65431, 78114, 69764, 67328, 64071, 73310, 73812, 72181, 68431

Codon changes

How to read this table:
- Rows are reference codons and columns are changed codons. E.g. Row 'AAA' column 'TAA' indicates how many 'AAA' codons have been replaced by 'TAA' codons.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

- AAA AAC AAG AAT ACA ACC ACG ACT AGA AGC AGG AGT ATA ATC ATG ATT CAA CAC CAG CAT CCA CCC CCG CCT CGA CGC CGG CGN CGT CNC CTA CTC CTG CTT GAA GAC GAG GAT GCA GCC GCG GCT GGA GGC GGG GGT GNC GTA GTC GTG GTT TAA TAC TAG TAT TCA TCC TCG TCT TGA TGC TGG TGT TNC TTA TTC TTG TTT

- 34 48 171 30 39 50 78 22 38 52 86 23 18 27 53 16 62 68 79 31 51 131 177 54 14 89 103 35 17 92 63 32 48 124 174 68 47 239 275 61 70 245 209 86 12 72 63 20 14 24 11 29 24 52 60 47 18 53 29 15 26 70 32 42

AAA 89 36 61 591 78 56 176 2 30 76 380 29

AAC 97 88 23 97 713 120 1 253 2 43 1 67 363 1 46

AAG 209 782 102 55 133 2 138 5 3 349 107 104 1 477 1 3 45

AAT 56 79 718 150 4 1 70 1 205 58 50 324 46

ACA 58 83 2 9 152 425 93 46 1 1 258 46 1 333 1 43

ACC 79 64 147 25 91 565 54 1 218 1 167 453 71

ACG 86 2 3 55 488 74 25 62 49 1 493 90 320 38

ACT 49 2 70 113 494 81 12 63 209 62 340 38

AGA 49 188 2 2 50 1 1 13 61 305 40 67 1 56 264 26

AGC 90 2 337 4 2 55 1 68 20 44 400 65 1 2 82 337 1 1 2 53

AGG 143 336 32 323 39 33 64 90 1 1 133 1 238 62

AGT 47 1 4 185 2 45 42 331 51 9 35 40 219 48

ATA 50 40 4 252 48 4 6 90 182 90 33 214 43

ATC 61 70 1 1 187 1 48 110 10 51 575 1 80 432 1 50

ATG 138 1 134 6 466 3 1 138 1 332 52 29 75 1 152 1 1 425 1 84

ATT 68 1 38 158 58 89 521 55 10 94 1 329 48

CAA 92 107 10 83 715 73 80 6 306 2 2 1 47 1 3 74 201

CAC 78 66 57 20 64 532 1 145 1 1 410 3 47 42 163

CAG 142 91 779 70 21 131 5 1 111 1 429 2 85 1 95 1 622 1

CAT 53 54 59 459 106 10 1 86 390 2 1 54 40 193

CCA 92 52 75 1 10 197 836 137 26 354 1 1 45 201

CCC 133 48 64 139 57 94 500 31 3 185 2 64 1 149

CCG 182 41 1 85 879 110 54 117 1 40 4 479 1 64 251

CCT 79 54 1 88 158 517 194 27 1 28 1 186 48 222

CGA 46 55 345 21 6 52 321 73 31 2 32 1 294

CGC 117 56 1 500 55 6 62 36 101 562 55 52 463

CGG 107 106 1 2 477 43 316 84 19 92 1 77 1 1 27 433

CGN 1

CGT 54 33 1 416 2 2 38 95 494 89 7 44 27 318 1

CNC 1

CTA 45 43 32 1 265 1 3 28 5 74 546 88 42 200

CTC 120 76 1 1 69 1 1 149 2 7 72 3 105 37 116 541 1 52 1 1 155

CTG 98 93 1 92 430 1 2 93 607 114 15 108 86 1 597

CTT 59 50 43 1 172 44 78 515 148 17 51 167

GAA 130 459 2 82 20 143 667 119 78 2 1 5 226 1 39 2 81

GAC 171 1 481 59 118 35 155 1,170 125 3 1 3 368 1 55 2 60 1 1

GAG 280 564 2 112 866 118 76 156 2 3 111 1 7 7 232 1 166 2 94 1

GAT 133 430 61 132 1,014 197 20 3 53 3 2 220 2 1 72 128

GCA 118 416 36 73 3 12 189 757 166 44 2 5 343 1 73

GCC 236 585 1 134 1 109 2 186 75 173 923 1 129 8 1 1 394 1 127

GCG 261 1 397 66 4 117 933 172 73 137 17 140 1 3 701 1 66

GCT 103 402 1 57 2 67 162 838 158 17 1 5 63 2 375 100

GGA 130 358 53 272 1 1 3 47 23 154 424 128 56 33

GGC 296 412 44 346 5 118 5 1 156 70 178 733 78 1 67

GGG 241 285 56 1 1 269 3 58 1 382 123 76 95 66 73

GGT 124 2 270 31 221 1 3 5 56 126 661 213 27 3 1 61 74

GNC

GTA 40 190 33 28 234 3 42 2 1 1 63 306 68 35

GTC 103 506 1 1 60 65 362 4 1 77 2 88 18 100 564 50

GTG 96 402 66 1 102 1 3 619 3 243 5 436 140 27 113 1 84

GTT 58 420 47 1 57 1 309 1 57 72 519 123 14 59

TAA 11 6 26 9 1 6 9 7 75 2 18 4

TAC 52 24 128 56 28 12 24 559 41 2 174 1 44

TAG 3 8 46 10 5 1 3 1 1 18 3 5

TAT 68 32 2 179 94 25 475 21 9 69 1 1 112 3 40

TCA 49 35 160 66 21 1 13 78 514 80 18 180 2

TCC 129 89 144 4 129 56 1 77 50 72 509 2 30 2 1 178

TCG 86 48 193 1 76 1 2 15 3 489 134 24 113 37 1 286

TCT 88 48 192 88 1 1 77 105 451 85 13 2 43 4 180

TGA 9 4 41 9 24 3 3 10 5 12 6

TGC 41 59 340 80 134 1 25 24 19 40 366 43 3

TGG 64 49 366 141 1 239 2 29 117 47 16 41 52

TGT 44 39 218 48 167 1 43 12 278 39 1 3 35

TNC 1

TTA 43 43 221 31 16 1 133 1 13 6 41 323 32

TTC 83 40 161 152 77 1 170 2 2 56 1 2 51 27 59 707

TTG 66 93 598 83 1 1 21 256 49 445 70 19 92

TTT 74 68 109 42 42 131 1 1 41 36 615 69 23

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

* - ? A C D E F G H I K L M N P Q R S T V W Y

* 70 22 1 11 19 9 14 12 72 45 10 1 30 88

- 43 1,365 622 68 192 222 112 610 99 61 205 262 53 78 413 141 365 258 189 167 29 53

? 2 1

A 718 4,971 182 195 417 295 367 1,801 1,822

C 36 85 664 78 128 6 558 168 79 301

D 1 304 185 1 2,239 602 597 120 1 911 132 188

E 175 410 203 536 1,629 474 1,023 194 2 1 2 209

F 1 157 100 1,372 108 485 305 194 2 119

G 33 791 298 141 572 548 3,569 827 683 2 265 73

H 131 82 1,021 104 120 234 286 804 356

I 179 1 98 1,501 41 251 288 114 49 110 597 976

K 77 298 1 857 30 1,464 107 374 180 532 3 196 1

L 52 431 1 557 114 212 5,523 187 1,031 127 242 391 346 49 2

M 138 1 1 1 459 135 236 29 6 139 1 469 425 1

N 153 1 687 117 101 414 1 1,458 3 458 192 92

P 486 222 1 153 1,213 4,026 162 130 823 195

Q 823 234 1 169 357 198 139 204 1,525 740 1

R 320 516 781 642 918 69 526 212 90 2 168 825 3,433 294 84 495

S 59 489 359 177 365 559 2 100 10 467 1 523 693 327 3,569 325 39 139

T 272 1,446 1 1 686 140 493 141 366 96 309 2,856

V 297 1,535 124 131 109 434 1,116 325 402 1 1 2,652 1

W 356 64 88 141 52 415 31 1 16

Y 98 120 287 150 84 307 2 4 56 112 1 1,055

Variants by chromosome

		

		1, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000
1,Count,637,2891,6635,3863,2277,405,821,662,1135,925,1076,1227,613,555,1442,580,1906,608,1301,607,689,544,500,4837,611,293,436,755,307,413,255,298,287,319,646,780,447,408,402,418,1183,402,1456,279

		

		2, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000
2,Count,273,252,359,1009,395,689,591,928,999,2041,1482,915,622,2658,796,599,9794,4135,8390,4840,768,719,545,657,5279,3343,1525,352,463,969,682,214,280,277,199,317

		

		3, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000
3,Count,280,1167,392,482,187,290,535,378,3777,241,460,525,472,1326,715,1769,2146,639,640,1251,582,615,569,655,634,10457,558,409,275,234,318,321,425,166,302,257,150

		

		4, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000
4,Count,3863,671,1818,6487,3595,1048,1916,2010,1063,896,808,1009,920,773,1735,1192,2785,4943,1421,1180,2867,831,608,518,363,622,544,567,1103,928,548,1594,3871,705,407,406

		

		5, Position,0,100000,200000,300000,400000,500000,600000,700000,800000,900000,1000000,1100000,1200000,1300000,1400000,1500000,1600000,1700000,1800000,1900000,2000000,2100000,2200000,2300000,2400000,2500000,2600000,2700000,2800000,2900000,3000000,3100000,3200000,3300000,3400000,3500000,3600000,3700000,3800000,3900000,4000000,4100000,4200000,4300000,4400000,4500000,4600000,4700000,4800000,4900000,5000000,5100000,5200000,5300000,5400000,5500000,5600000,5700000,5800000,5900000,6000000,6100000,6200000,6300000,6400000,6500000,6600000,6700000,6800000,6900000,7000000,7100000,7200000,7300000,7400000,7500000,7600000,7700000,7800000,7900000,8000000,8100000,8200000,8300000,8400000,8500000,8600000,8700000,8800000,8900000,9000000,9100000,9200000,9300000,9400000,9500000,9600000,9700000,9800000,9900000,10000000,10100000,10200000,10300000,10400000,10500000,10600000,10700000,10800000,10900000,11000000,11100000,11200000,11300000,11400000,11500000,11600000,11700000,11800000,11900000,12000000,12100000,12200000,12300000,12400000,12500000,12600000,12700000,12800000,12900000,13000000,13100000,13200000,13300000,13400000,13500000,13600000,13700000,13800000,13900000,14000000,14100000,14200000,14300000,14400000,14500000,14600000,14700000,14800000,14900000,15000000,15100000,15200000,15300000,15400000,15500000,15600000,15700000,15800000,15900000,16000000,16100000,16200000,16300000,16400000,16500000,16600000,16700000,16800000,16900000,17000000,17100000,17200000,17300000,17400000,17500000,17600000,17700000,17800000,17900000,18000000,18100000,18200000,18300000,18400000,18500000,18600000,18700000,18800000,18900000,19000000,19100000,19200000,19300000,19400000,19500000,19600000,19700000,19800000,19900000,20000000,20100000,20200000,20300000,20400000,20500000,20600000,20700000,20800000,20900000,21000000,21100000,21200000,21300000,21400000,21500000,21600000,21700000,21800000,21900000,22000000,22100000,22200000,22300000,22400000,22500000,22600000,22700000,22800000,22900000,23000000,23100000,23200000,23300000,23400000,23500000,23600000,23700000,23800000,23900000,24000000,24100000,24200000,24300000,24400000,24500000,24600000,24700000,24800000,24900000,25000000,25100000,25200000,25300000,25400000,25500000,25600000,25700000,25800000,25900000,26000000,26100000,26200000,26300000,26400000,26500000,26600000,26700000,26800000,26900000,27000000,27100000,27200000,27300000,27400000,27500000,27600000,27700000,27800000,27900000,28000000,28100000,28200000,28300000,28400000,28500000,28600000,28700000,28800000,28900000,29000000,29100000,29200000,29300000,29400000,29500000,29600000,29700000,29800000,29900000
5,Count,32,17,38,49,62,114,70,58,38,70,70,17,22,42,16,26,37,159,33,31,22,29,83,12,104,13,13,12,28,120,173,210,45,30,93,76,33,19,23,126,91,11,24,59,105,69,40,30,35,83,96,46,107,116,200,124,41,81,48,229,100,100,114,260,74,29,34,19,54,31,139,82,76,303,297,98,56,69,157,56,72,103,80,65,62,53,47,92,136,69,72,19,59,38,123,57,132,59,129,172,150,197,88,127,72,103,166,111,39,48,64,149,66,76,52,136,53,49,138,121,106,114,45,79,217,381,56,141,42,77,22,121,72,77,35,104,43,25,49,61,41,59,123,68,19,26,28,53,63,48,134,73,91,193,118,26,51,61,84,115,61,74,42,36,40,214,34,30,19,26,47,72,492,75,42,97,38,36,56,33,19,29,105,76,41,40,22,73,69,293,408,233,29,29,27,29,33,32,44,19,28,24,38,55,20,32,42,11,33,41,22,106,24,42,27,64,24,14,98,49,58,52,6,19,24,11,36,24,97,20,26,59,95,39,40,35,10,65,30,62,45,19,18,34,35,19,38,9,47,84,27,66,24,20,30,36,26,88,54,23,33,20,83,8,54,64,6,30,31,28,71,74,69,320,105,44,27,34,54,78,37,11,6,4,26,15,32,15,24,12,8,110,233,86,77,85,146,110,933,394

		

		6, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000
6,Count,895,444,310,434,1787,535,581,388,1921,675,4587,427,290,506,614,1440,659,449,8791,5296,3865,3145,6637,4817,515,499,494,297,609,613,383,57

		

		7, Position,0,100000,200000,300000,400000,500000,600000,700000,800000,900000,1000000,1100000,1200000,1300000,1400000,1500000,1600000,1700000,1800000,1900000,2000000,2100000,2200000,2300000,2400000,2500000,2600000,2700000,2800000,2900000,3000000,3100000,3200000,3300000,3400000,3500000,3600000,3700000,3800000,3900000,4000000,4100000,4200000,4300000,4400000,4500000,4600000,4700000,4800000,4900000,5000000,5100000,5200000,5300000,5400000,5500000,5600000,5700000,5800000,5900000,6000000,6100000,6200000,6300000,6400000,6500000,6600000,6700000,6800000,6900000,7000000,7100000,7200000,7300000,7400000,7500000,7600000,7700000,7800000,7900000,8000000,8100000,8200000,8300000,8400000,8500000,8600000,8700000,8800000,8900000,9000000,9100000,9200000,9300000,9400000,9500000,9600000,9700000,9800000,9900000,10000000,10100000,10200000,10300000,10400000,10500000,10600000,10700000,10800000,10900000,11000000,11100000,11200000,11300000,11400000,11500000,11600000,11700000,11800000,11900000,12000000,12100000,12200000,12300000,12400000,12500000,12600000,12700000,12800000,12900000,13000000,13100000,13200000,13300000,13400000,13500000,13600000,13700000,13800000,13900000,14000000,14100000,14200000,14300000,14400000,14500000,14600000,14700000,14800000,14900000,15000000,15100000,15200000,15300000,15400000,15500000,15600000,15700000,15800000,15900000,16000000,16100000,16200000,16300000,16400000,16500000,16600000,16700000,16800000,16900000,17000000,17100000,17200000,17300000,17400000,17500000,17600000,17700000,17800000,17900000,18000000,18100000,18200000,18300000,18400000,18500000,18600000,18700000,18800000,18900000,19000000,19100000,19200000,19300000,19400000,19500000,19600000,19700000,19800000,19900000,20000000,20100000,20200000,20300000,20400000,20500000,20600000,20700000,20800000,20900000,21000000,21100000,21200000,21300000,21400000,21500000,21600000,21700000,21800000,21900000,22000000,22100000,22200000,22300000,22400000,22500000,22600000,22700000,22800000,22900000,23000000,23100000,23200000,23300000,23400000,23500000,23600000,23700000,23800000,23900000,24000000,24100000,24200000,24300000,24400000,24500000,24600000,24700000,24800000,24900000,25000000,25100000,25200000,25300000,25400000,25500000,25600000,25700000,25800000,25900000,26000000,26100000,26200000,26300000,26400000,26500000,26600000,26700000,26800000,26900000,27000000,27100000,27200000,27300000,27400000,27500000,27600000,27700000,27800000,27900000,28000000,28100000,28200000,28300000,28400000,28500000,28600000,28700000,28800000,28900000,29000000,29100000,29200000,29300000,29400000,29500000,29600000
7,Count,27,70,67,25,28,12,82,15,26,34,18,464,406,67,149,197,694,836,35,34,47,11,17,15,30,49,19,81,103,186,248,712,173,54,31,81,101,80,486,767,26,21,8,41,87,247,689,462,46,24,78,60,333,599,1429,39,36,44,50,51,36,290,1115,571,265,99,62,52,170,29,50,83,65,48,42,49,76,46,88,86,78,27,24,24,91,112,75,59,89,48,102,167,236,78,91,124,116,139,98,163,63,80,64,84,157,121,144,120,69,82,246,227,192,228,256,130,290,303,321,290,360,502,907,302,222,176,156,131,248,193,109,147,123,52,81,68,22,21,57,43,90,94,70,72,56,33,39,66,73,69,97,67,49,18,56,86,12,19,33,11,131,197,33,52,91,42,78,59,112,57,122,45,24,94,52,78,54,57,14,96,60,109,50,44,47,23,32,123,66,33,31,48,27,37,46,58,22,50,128,19,61,29,15,31,299,197,691,519,43,19,33,50,68,7,31,16,40,13,15,16,18,33,23,59,820,161,26,56,610,718,721,523,166,82,199,46,37,62,23,40,41,28,41,663,1342,1220,37,327,688,744,409,806,926,114,37,23,3,16,34,19,39,42,190,346,19,46,12,23,67,71,34,55,207,80,37,46,282,210,407,30,38,12,21,149,14,55,79,18,27,55,84,48,46,43,33,60,72

		

		8, Position,0,100000,200000,300000,400000,500000,600000,700000,800000,900000,1000000,1100000,1200000,1300000,1400000,1500000,1600000,1700000,1800000,1900000,2000000,2100000,2200000,2300000,2400000,2500000,2600000,2700000,2800000,2900000,3000000,3100000,3200000,3300000,3400000,3500000,3600000,3700000,3800000,3900000,4000000,4100000,4200000,4300000,4400000,4500000,4600000,4700000,4800000,4900000,5000000,5100000,5200000,5300000,5400000,5500000,5600000,5700000,5800000,5900000,6000000,6100000,6200000,6300000,6400000,6500000,6600000,6700000,6800000,6900000,7000000,7100000,7200000,7300000,7400000,7500000,7600000,7700000,7800000,7900000,8000000,8100000,8200000,8300000,8400000,8500000,8600000,8700000,8800000,8900000,9000000,9100000,9200000,9300000,9400000,9500000,9600000,9700000,9800000,9900000,10000000,10100000,10200000,10300000,10400000,10500000,10600000,10700000,10800000,10900000,11000000,11100000,11200000,11300000,11400000,11500000,11600000,11700000,11800000,11900000,12000000,12100000,12200000,12300000,12400000,12500000,12600000,12700000,12800000,12900000,13000000,13100000,13200000,13300000,13400000,13500000,13600000,13700000,13800000,13900000,14000000,14100000,14200000,14300000,14400000,14500000,14600000,14700000,14800000,14900000,15000000,15100000,15200000,15300000,15400000,15500000,15600000,15700000,15800000,15900000,16000000,16100000,16200000,16300000,16400000,16500000,16600000,16700000,16800000,16900000,17000000,17100000,17200000,17300000,17400000,17500000,17600000,17700000,17800000,17900000,18000000,18100000,18200000,18300000,18400000,18500000,18600000,18700000,18800000,18900000,19000000,19100000,19200000,19300000,19400000,19500000,19600000,19700000,19800000,19900000,20000000,20100000,20200000,20300000,20400000,20500000,20600000,20700000,20800000,20900000,21000000,21100000,21200000,21300000,21400000,21500000,21600000,21700000,21800000,21900000,22000000,22100000,22200000,22300000,22400000,22500000,22600000,22700000,22800000,22900000,23000000,23100000,23200000,23300000,23400000,23500000,23600000,23700000,23800000,23900000,24000000,24100000,24200000,24300000,24400000,24500000,24600000,24700000,24800000,24900000,25000000,25100000,25200000,25300000,25400000,25500000,25600000,25700000,25800000,25900000,26000000,26100000,26200000,26300000,26400000,26500000,26600000,26700000,26800000,26900000,27000000,27100000,27200000,27300000,27400000,27500000,27600000,27700000,27800000,27900000,28000000,28100000,28200000,28300000,28400000
8,Count,54,92,43,82,41,61,70,102,115,28,94,52,495,210,121,28,28,34,72,104,39,86,81,32,40,52,31,81,32,5,6,26,158,13,103,45,168,23,24,47,64,39,109,617,82,87,60,67,40,81,59,40,42,207,273,81,82,33,73,236,532,253,6,115,83,73,123,54,64,134,75,120,162,102,39,49,36,30,47,60,71,39,65,53,47,89,109,210,91,47,36,50,21,24,47,66,48,70,414,673,1127,731,23,24,43,27,64,86,72,40,101,203,116,105,54,88,165,57,40,45,79,101,119,33,151,161,102,61,40,591,101,83,60,113,59,137,112,156,161,81,85,70,97,83,343,1437,1056,797,1342,1254,1409,520,415,110,27,19,24,46,74,39,44,60,85,932,1403,245,943,1169,573,55,267,22,26,54,87,47,19,23,29,152,94,58,504,75,226,495,78,93,22,43,21,21,18,177,58,73,236,1286,474,247,275,1205,409,541,499,86,306,51,61,32,77,73,100,23,15,35,66,41,53,101,31,59,40,98,46,73,57,43,74,35,35,46,70,63,46,122,96,82,51,44,74,365,146,40,43,71,38,56,210,59,45,125,97,223,32,36,27,47,27,26,44,29,23,36,50,23,47,29,206,19,27,65,25,46,50,54,15,30,27,24,83,39,42,41,135

		

		9, Position,0,100000,200000,300000,400000,500000,600000,700000,800000,900000,1000000,1100000,1200000,1300000,1400000,1500000,1600000,1700000,1800000,1900000,2000000,2100000,2200000,2300000,2400000,2500000,2600000,2700000,2800000,2900000,3000000,3100000,3200000,3300000,3400000,3500000,3600000,3700000,3800000,3900000,4000000,4100000,4200000,4300000,4400000,4500000,4600000,4700000,4800000,4900000,5000000,5100000,5200000,5300000,5400000,5500000,5600000,5700000,5800000,5900000,6000000,6100000,6200000,6300000,6400000,6500000,6600000,6700000,6800000,6900000,7000000,7100000,7200000,7300000,7400000,7500000,7600000,7700000,7800000,7900000,8000000,8100000,8200000,8300000,8400000,8500000,8600000,8700000,8800000,8900000,9000000,9100000,9200000,9300000,9400000,9500000,9600000,9700000,9800000,9900000,10000000,10100000,10200000,10300000,10400000,10500000,10600000,10700000,10800000,10900000,11000000,11100000,11200000,11300000,11400000,11500000,11600000,11700000,11800000,11900000,12000000,12100000,12200000,12300000,12400000,12500000,12600000,12700000,12800000,12900000,13000000,13100000,13200000,13300000,13400000,13500000,13600000,13700000,13800000,13900000,14000000,14100000,14200000,14300000,14400000,14500000,14600000,14700000,14800000,14900000,15000000,15100000,15200000,15300000,15400000,15500000,15600000,15700000,15800000,15900000,16000000,16100000,16200000,16300000,16400000,16500000,16600000,16700000,16800000,16900000,17000000,17100000,17200000,17300000,17400000,17500000,17600000,17700000,17800000,17900000,18000000,18100000,18200000,18300000,18400000,18500000,18600000,18700000,18800000,18900000,19000000,19100000,19200000,19300000,19400000,19500000,19600000,19700000,19800000,19900000,20000000,20100000,20200000,20300000,20400000,20500000,20600000,20700000,20800000,20900000,21000000,21100000,21200000,21300000,21400000,21500000,21600000,21700000,21800000,21900000,22000000,22100000,22200000,22300000,22400000,22500000,22600000,22700000,22800000,22900000,23000000
9,Count,46,232,66,131,65,91,76,102,29,11,69,114,46,42,51,54,219,35,20,62,47,124,89,18,42,25,36,264,350,20,46,44,53,17,64,51,50,12,17,23,30,28,28,74,21,34,177,144,211,127,1174,631,70,43,89,56,51,49,53,30,15,39,38,85,38,23,150,181,39,22,75,75,901,1268,674,1013,1299,264,55,57,137,41,113,61,172,38,35,35,216,66,401,111,61,619,294,338,127,201,56,114,133,98,675,1062,870,638,705,607,400,464,393,113,34,128,46,312,166,318,49,39,45,61,66,75,61,50,64,42,10,93,90,20,33,16,57,73,68,43,50,25,32,53,105,96,85,82,54,62,26,293,1396,880,48,28,10,11,24,20,30,40,14,99,94,55,24,18,58,26,25,18,30,30,144,38,28,15,61,35,27,63,38,48,51,36,17,30,133,68,37,36,43,97,32,24,29,55,86,23,112,72,77,231,96,25,65,15,19,11,47,20,51,54,68,22,37,28,16,26,22,8,15,10,15,13,103,116,18,32,149,147,15

		

		10, Position,0,100000,200000,300000,400000,500000,600000,700000,800000,900000,1000000,1100000,1200000,1300000,1400000,1500000,1600000,1700000,1800000,1900000,2000000,2100000,2200000,2300000,2400000,2500000,2600000,2700000,2800000,2900000,3000000,3100000,3200000,3300000,3400000,3500000,3600000,3700000,3800000,3900000,4000000,4100000,4200000,4300000,4400000,4500000,4600000,4700000,4800000,4900000,5000000,5100000,5200000,5300000,5400000,5500000,5600000,5700000,5800000,5900000,6000000,6100000,6200000,6300000,6400000,6500000,6600000,6700000,6800000,6900000,7000000,7100000,7200000,7300000,7400000,7500000,7600000,7700000,7800000,7900000,8000000,8100000,8200000,8300000,8400000,8500000,8600000,8700000,8800000,8900000,9000000,9100000,9200000,9300000,9400000,9500000,9600000,9700000,9800000,9900000,10000000,10100000,10200000,10300000,10400000,10500000,10600000,10700000,10800000,10900000,11000000,11100000,11200000,11300000,11400000,11500000,11600000,11700000,11800000,11900000,12000000,12100000,12200000,12300000,12400000,12500000,12600000,12700000,12800000,12900000,13000000,13100000,13200000,13300000,13400000,13500000,13600000,13700000,13800000,13900000,14000000,14100000,14200000,14300000,14400000,14500000,14600000,14700000,14800000,14900000,15000000,15100000,15200000,15300000,15400000,15500000,15600000,15700000,15800000,15900000,16000000,16100000,16200000,16300000,16400000,16500000,16600000,16700000,16800000,16900000,17000000,17100000,17200000,17300000,17400000,17500000,17600000,17700000,17800000,17900000,18000000,18100000,18200000,18300000,18400000,18500000,18600000,18700000,18800000,18900000,19000000,19100000,19200000,19300000,19400000,19500000,19600000,19700000,19800000,19900000,20000000,20100000,20200000,20300000,20400000,20500000,20600000,20700000,20800000,20900000,21000000,21100000,21200000,21300000,21400000,21500000,21600000,21700000,21800000,21900000,22000000,22100000,22200000,22300000,22400000,22500000,22600000,22700000,22800000,22900000,23000000,23100000,23200000
10,Count,29,35,72,71,20,80,75,40,14,15,48,36,44,83,25,66,56,40,33,55,492,652,1007,962,630,794,1334,438,49,98,25,101,258,115,30,89,117,41,52,51,63,14,40,53,73,134,158,42,45,120,238,215,79,59,142,94,32,86,49,120,52,72,66,87,140,126,35,43,152,208,259,138,175,38,23,26,132,85,101,72,724,552,48,96,134,38,88,208,43,25,62,40,57,54,124,43,46,137,50,27,166,218,256,647,247,455,255,302,139,109,59,75,42,46,85,50,19,246,6,23,15,36,117,115,118,132,135,83,102,68,29,29,34,40,139,70,87,21,2,60,53,31,39,35,13,23,17,10,95,42,144,117,61,56,33,100,30,68,30,152,58,51,50,45,119,104,62,34,29,52,57,68,57,71,39,25,45,14,26,196,69,84,24,27,21,37,49,45,81,176,345,225,61,33,100,48,25,5,29,28,40,62,76,20,26,132,32,38,42,37,43,48,405,32,53,85,83,82,22,24,33,27,84,30,32,12,21,42,116,79,21,43,0

		

		11, Position,0,100000,200000,300000,400000,500000,600000,700000,800000,900000,1000000,1100000,1200000,1300000,1400000,1500000,1600000,1700000,1800000,1900000,2000000,2100000,2200000,2300000,2400000,2500000,2600000,2700000,2800000,2900000,3000000,3100000,3200000,3300000,3400000,3500000,3600000,3700000,3800000,3900000,4000000,4100000,4200000,4300000,4400000,4500000,4600000,4700000,4800000,4900000,5000000,5100000,5200000,5300000,5400000,5500000,5600000,5700000,5800000,5900000,6000000,6100000,6200000,6300000,6400000,6500000,6600000,6700000,6800000,6900000,7000000,7100000,7200000,7300000,7400000,7500000,7600000,7700000,7800000,7900000,8000000,8100000,8200000,8300000,8400000,8500000,8600000,8700000,8800000,8900000,9000000,9100000,9200000,9300000,9400000,9500000,9600000,9700000,9800000,9900000,10000000,10100000,10200000,10300000,10400000,10500000,10600000,10700000,10800000,10900000,11000000,11100000,11200000,11300000,11400000,11500000,11600000,11700000,11800000,11900000,12000000,12100000,12200000,12300000,12400000,12500000,12600000,12700000,12800000,12900000,13000000,13100000,13200000,13300000,13400000,13500000,13600000,13700000,13800000,13900000,14000000,14100000,14200000,14300000,14400000,14500000,14600000,14700000,14800000,14900000,15000000,15100000,15200000,15300000,15400000,15500000,15600000,15700000,15800000,15900000,16000000,16100000,16200000,16300000,16400000,16500000,16600000,16700000,16800000,16900000,17000000,17100000,17200000,17300000,17400000,17500000,17600000,17700000,17800000,17900000,18000000,18100000,18200000,18300000,18400000,18500000,18600000,18700000,18800000,18900000,19000000,19100000,19200000,19300000,19400000,19500000,19600000,19700000,19800000,19900000,20000000,20100000,20200000,20300000,20400000,20500000,20600000,20700000,20800000,20900000,21000000,21100000,21200000,21300000,21400000,21500000,21600000,21700000,21800000,21900000,22000000,22100000,22200000,22300000,22400000,22500000,22600000,22700000,22800000,22900000,23000000,23100000,23200000,23300000,23400000,23500000,23600000,23700000,23800000,23900000,24000000,24100000,24200000,24300000,24400000,24500000,24600000,24700000,24800000,24900000,25000000,25100000,25200000,25300000,25400000,25500000,25600000,25700000,25800000,25900000,26000000,26100000,26200000,26300000,26400000,26500000,26600000,26700000,26800000,26900000,27000000,27100000,27200000,27300000,27400000,27500000,27600000,27700000,27800000,27900000,28000000,28100000,28200000,28300000,28400000,28500000,28600000,28700000,28800000,28900000,29000000
11,Count,60,64,43,35,13,75,105,104,66,127,52,63,26,24,38,176,65,42,52,105,103,47,17,58,25,21,90,42,57,16,110,90,68,43,84,48,190,45,15,46,13,11,45,10,19,33,38,50,602,1513,1653,1049,739,574,152,33,53,80,39,55,60,365,269,336,104,1121,723,1201,1161,1433,1393,1276,616,534,518,216,13,32,170,87,42,75,29,31,20,35,35,5,24,55,12,5,11,65,18,64,50,27,43,33,19,15,31,38,100,87,47,66,89,52,39,98,70,75,91,60,77,47,159,68,145,266,384,352,28,63,95,89,45,80,44,100,160,165,115,78,145,60,69,74,18,19,60,104,101,84,24,11,22,79,57,62,111,44,27,113,30,113,12,35,50,76,130,69,60,118,177,75,37,69,26,110,42,50,75,342,450,711,201,108,79,102,155,54,62,87,55,172,42,183,208,58,70,72,121,270,1094,763,1124,23,18,19,89,28,34,50,115,21,83,52,12,77,105,95,27,47,38,38,38,32,72,866,780,68,395,1749,957,532,1210,799,250,51,274,65,39,12,94,77,68,30,22,21,68,1058,707,606,191,174,149,118,126,31,70,24,79,42,168,112,675,548,381,597,1068,448,143,10,110,71,47,83,112,44,110,408,1173,627,447,1130,1124,637,837,987,1503,716,1236,107,603,1001,234,75,45

		

		12, Position,0,100000,200000,300000,400000,500000,600000,700000,800000,900000,1000000,1100000,1200000,1300000,1400000,1500000,1600000,1700000,1800000,1900000,2000000,2100000,2200000,2300000,2400000,2500000,2600000,2700000,2800000,2900000,3000000,3100000,3200000,3300000,3400000,3500000,3600000,3700000,3800000,3900000,4000000,4100000,4200000,4300000,4400000,4500000,4600000,4700000,4800000,4900000,5000000,5100000,5200000,5300000,5400000,5500000,5600000,5700000,5800000,5900000,6000000,6100000,6200000,6300000,6400000,6500000,6600000,6700000,6800000,6900000,7000000,7100000,7200000,7300000,7400000,7500000,7600000,7700000,7800000,7900000,8000000,8100000,8200000,8300000,8400000,8500000,8600000,8700000,8800000,8900000,9000000,9100000,9200000,9300000,9400000,9500000,9600000,9700000,9800000,9900000,10000000,10100000,10200000,10300000,10400000,10500000,10600000,10700000,10800000,10900000,11000000,11100000,11200000,11300000,11400000,11500000,11600000,11700000,11800000,11900000,12000000,12100000,12200000,12300000,12400000,12500000,12600000,12700000,12800000,12900000,13000000,13100000,13200000,13300000,13400000,13500000,13600000,13700000,13800000,13900000,14000000,14100000,14200000,14300000,14400000,14500000,14600000,14700000,14800000,14900000,15000000,15100000,15200000,15300000,15400000,15500000,15600000,15700000,15800000,15900000,16000000,16100000,16200000,16300000,16400000,16500000,16600000,16700000,16800000,16900000,17000000,17100000,17200000,17300000,17400000,17500000,17600000,17700000,17800000,17900000,18000000,18100000,18200000,18300000,18400000,18500000,18600000,18700000,18800000,18900000,19000000,19100000,19200000,19300000,19400000,19500000,19600000,19700000,19800000,19900000,20000000,20100000,20200000,20300000,20400000,20500000,20600000,20700000,20800000,20900000,21000000,21100000,21200000,21300000,21400000,21500000,21600000,21700000,21800000,21900000,22000000,22100000,22200000,22300000,22400000,22500000,22600000,22700000,22800000,22900000,23000000,23100000,23200000,23300000,23400000,23500000,23600000,23700000,23800000,23900000,24000000,24100000,24200000,24300000,24400000,24500000,24600000,24700000,24800000,24900000,25000000,25100000,25200000,25300000,25400000,25500000,25600000,25700000,25800000,25900000,26000000,26100000,26200000,26300000,26400000,26500000,26600000,26700000,26800000,26900000,27000000,27100000,27200000,27300000,27400000,27500000
12,Count,18,28,17,25,18,13,16,39,35,20,27,20,33,9,18,20,18,14,28,11,24,48,47,274,32,16,14,23,4,18,23,16,43,43,29,11,362,137,65,32,14,250,83,80,19,48,38,32,85,74,34,54,97,105,43,51,119,268,373,1005,1146,1374,1111,393,190,656,634,560,1000,801,867,967,87,55,33,35,35,61,92,120,72,36,338,40,131,254,53,60,96,75,167,114,65,78,98,100,112,131,197,105,89,152,60,87,31,48,74,48,22,80,60,38,16,151,68,90,149,59,110,554,917,53,39,51,74,66,37,25,113,64,120,33,51,105,44,152,52,202,70,127,49,45,57,95,73,53,132,89,99,56,41,79,77,99,120,66,89,119,26,131,38,51,83,45,57,22,21,49,61,46,82,155,112,26,56,41,42,14,60,79,10,89,260,621,971,1597,1403,860,712,556,667,545,49,54,367,91,31,47,90,35,39,117,99,82,90,74,79,118,15,42,27,42,36,84,19,68,41,43,22,178,15,18,55,62,21,48,38,9,93,195,34,40,58,62,111,748,284,48,25,46,34,6,27,28,16,68,85,28,48,50,31,63,52,134,53,65,188,107,132,105,94,47,40,24,34,68,43,88,138,775,2449,856,251,44,51,2

		

		Sy, Position,0,10000,20000,30000,40000,50000,60000,70000,80000,90000,100000,110000,120000,130000,140000,150000,160000,170000,180000,190000,200000,210000,220000,230000,240000,250000,260000,270000,280000,290000,300000,310000,320000,330000,340000,350000,360000,370000,380000,390000,400000,410000,420000,430000,440000,450000,460000,470000,480000,490000,500000,510000,520000,530000,540000,550000,560000,570000,580000,590000
Sy,Count,21,5,1,5,13,5,82,8,110,47,23,50,25,140,34,19,21,19,7,48,25,50,32,4,42,47,0,15,99,9,1,16,23,27,2,31,14,93,57,84,81,24,16,38,76,0,58,18,2,66,49,9,61,12,12,1,1,28,58,6

		

		Un, Position,0,10000,20000,30000,40000,50000,60000,70000,80000,90000,100000,110000,120000,130000,140000,150000,160000,170000,180000,190000,200000,210000,220000,230000,240000,250000,260000,270000,280000,290000,300000,310000,320000,330000,340000,350000,360000,370000,380000,390000,400000,410000,420000,430000,440000,450000,460000,470000,480000,490000,500000,510000,520000,530000,540000,550000,560000,570000,580000,590000,600000,610000,620000,630000
Un,Count,9,28,83,22,70,165,202,192,155,25,49,52,0,31,4,55,48,4,51,250,141,4,37,37,2,211,20,113,125,83,156,250,181,48,69,88,4,0,0,50,14,209,33,88,34,13,28,22,42,47,45,2,7,2,12,4,15,110,79,102,49,26,21,0

Details by gene

Here you can find a tab-separated table.

Genome	osativa7.0
Date	2020-01-10 09:59
SnpEff version	SnpEff 4.0e (build 2014-09-13), by Pablo Cingolani
Command line arguments	SnpEff -classic -no-upstream -no-downstream -s ron.osativ.FN36.nip.011020.multisample.samtools_mpileup.flt.3X.anno.vcf.snpEff_summary.html osativa7.0 ron.osativ.FN36.nip.011020.multisample.samtools_mpileup.flt.3X.vcf.gz
Warnings	7,195
Errors	0
Number of lines (input file)	522,557
Number of variants (before filter)	530,052
Number of not variants (i.e. reference equals alternative)	0
Number of variants processed (i.e. after filter and non-variants)	530,052
Number of known variants (i.e. non-empty ID)	0 ( 0% )
Number of multi-allelic VCF entries (i.e. more than two alleles)	7,324
Number of effects	1,472,394
Genome total length	374,471,240
Genome effective length	374,471,240
Variant rate	1 variant every 706 bases

Min	0
Max	46
Mean	2.235
Median	1
Standard deviation	4.161
Values	0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46
Count	17610,59384,4608,4687,1605,2577,935,1507,820,911,501,879,337,500,290,373,158,376,139,252,181,227,112,161,91,108,77,80,70,81,35,63,30,39,19,34,27,15,13,16,10,6,6,11,7,1,3

	-	AAA	AAC	AAG	AAT	ACA	ACC	ACG	ACT	AGA	AGC	AGG	AGT	ATA	ATC	ATG	ATT	CAA	CAC	CAG	CAT	CCA	CCC	CCG	CCT	CGA	CGC	CGG	CGT	CNC	CTA	CTC	CTG	CTT	GAA	GAC	GAG	GAT	GCA	GCC	GCG	GCT	GGA	GGC	GGG	GGT	GNC	GTA	GTC	GTG	GTT	TAA	TAC	TAG	TAT	TCA	TCC	TCG	TCT	TGA	TGC	TGG	TGT	TTA	TTC	TTG	TTT
-		34	48	171	30	39	50	78	22	38	52	86	23	18	27	53	16	62	68	79	31	51	131	177	54	14	89	103	35		17	92	63	32	48	124	174	68	47	239	275	61	70	245	209	86		12	72	63	20	14	24	11	29	24	52	60	47	18	53	29	15	26	70	32	42
AAA	89	36	61	591	78	56				176		2		30				76																	380																	29
AAC	97	88	23	97	713		120	1			253	2			43	1			67																	363			1														46
AAG	209	782	102	55	133		2	138		5	3	349				107				104																1	477												1			3		45
AAT	56	79	718	150	4		1		70			1	205				58				50																	324																	46
ACA	58	83	2			9	152	425	93	46	1	1		258								46													1				333						1											43
ACC	79		64			147	25	91	565		54		1		218							1	167																	453																	71
ACG	86	2	3	55		488	74	25	62			49			1	493								90																	320																	38
ACT	49		2		70	113	494	81	12				63				209								62																	340																	38
AGA	49	188		2	2	50	1	1		13	61	305	40	67	1											56																	264																	26
AGC	90	2	337	4		2	55	1		68	20	44	400		65	1					2						82																	337		1								1		2					53
AGG	143			336				32		323	39	33	64			90	1						1					133																1	238																	62
AGT	47		1	4	185	2			45	42	331	51	9				35												40																	219																	48
ATA	50	40			4	252				48			4	6	90	182	90														33																	214																43
ATC	61		70	1	1		187			1	48			110	10	51	575														1	80																	432	1															50
ATG	138	1		134	6			466	3	1		138	1	332	52	29	75				1												152					1				1								425					1											84
ATT	68		1		38				158				58	89	521	55	10																	94				1													329																48
CAA	92	107																10	83	715	73	80	6			306	2	2	1		47	1		3	74																	201
CAC	78		66															57	20	64	532	1	145	1		1	410	3				47				42																	163
CAG	142			91														779	70	21	131	5	1	111	1			429				2	85	1			95		1															622								1
CAT	53				54													59	459	106	10			1	86				390		2	1		54				40																	193
CCA	92					52												75		1		10	197	836	137	26					354		1	1					45																	201
CCC	133						48												64			139	57	94	500		31	3				185		2						64				1													149
CCG	182							41											1	85		879	110	54	117		1	40				4	479							1	64																	251
CCT	79								54									1			88	158	517	194	27		1		28			1		186								48																	222
CGA	46									55								345				21				6	52	321	73		31		2										32															1		294
CGC	117										56							1	500				55	6		62	36	101	562			55												52																	463
CGG	107											106						1	2	477				43		316	84	19	92			1	77	1										1	27																	433
CGN																								1
CGT	54												33					1			416		2	2	38	95	494	89	7					44												27																	318	1
CNC																														1
CTA	45													43				32			1	265	1		3	28					5	74	546	88														42																200
CTC	120														76	1		1	69	1	1		149	2	7		72		3		105	37	116	541								1							52		1						1								155
CTG	98															93		1		92				430	1		2	93			607	114	15	108																86										1						597
CTT	59																50				43		1		172				44		78	515	148	17																	51																167
GAA	130	459								2								82																	20	143	667	119	78	2	1	5	226		1			39		2		81
GAC	171	1	481																59																118	35	155	1,170		125	3	1	3	368	1				55	2			60							1	1
GAG	280			564			2													112															866	118	76	156	2	3	111	1	7	7	232	1				166	2			94		1
GAT	133				430																61														132	1,014	197	20	3			53	3	2		220		2	1		72				128
GCA	118					416																36													73		3		12	189	757	166	44	2	5			343	1							73
GCC	236						585				1												134		1											109	2		186	75	173	923	1	129	8	1		1	394	1							127
GCG	261					1		397																66												4	117		933	172	73	137		17	140	1			3	701	1							66
GCT	103								402															1	57											2		67	162	838	158	17	1	5		63			2		375								100
GGA	130									358																53									272	1	1	3	47				23	154	424	128		56												33
GGC	296										412																44									346	5			118	5	1	156	70	178	733			78									1			67
GGG	241											285																56							1	1	269			3	58	1	382	123	76	95				66												73
GGT	124						2						270																31									221	1	3	5	56	126	661	213	27			3	1	61												74
GNC
GTA	40													190																	33				28				234			3	42		2	1		1	63	306	68													35
GTC	103														506							1							1			60				65				362		4	1	77		2		88	18	100	564														50
GTG	96															402																	66			1	102	1		3	619			3	243	5		436	140	27	113				1											84
GTT	58																420																	47			1	57		1		309	1			57		72	519	123	14																59
TAA	11	6																26																	9													1				6	9	7	75	2				18				4
TAC	52		24																128																	56																28	12	24	559		41	2			174			1	44
TAG	3			8																46																	10															5	1		3	1		1				18		3		5
TAT	68				32									2							179																	94														25	475	21	9				69		1	1	112	3			40
TCA	49					35																160																	66													21			1	13	78	514	80	18				180	2
TCC	129						89																144	4																129													56	1		77	50	72	509	2	30	2	1		178
TCG	86							48																193								1									76											1	2	15	3	489	134	24	113			37			1	286
TCT	88								48																192																	88			1	1									77	105	451	85	13		2		43		4		180
TGA	9									4																41																	9									24				3		3		10	5	12	6
TGC	41										59																340																	80									134			1	25			24	19	40	366		43	3
TGG	64											49																366																	141					1				239		2		29		117	47	16	41			52
TGT	44												39																218																	48									167		1		43	12	278	39	1			3	35
TNC																																															1
TTA	43													43																	221																	31				16			1	133			1	13				6	41	323	32
TTC	83														40																	161																	152				77	1			170	2	2		56	1	2	51	27	59	707
TTG	66															93																	598																	83		1	1	21				256				49		445	70	19	92
TTT	74																68																	109																	42				42				131		1	1	41	36	615	69	23

	*	-	?	A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y
*	70	22	1		11		19		9			14	12				72	45	10		1	30	88
-	43		1,365	622	68	192	222	112	610	99	61	205	262	53	78	413	141	365	258	189	167	29	53
?			2													1
A		718		4,971		182	195		417							295			367	1,801	1,822
C	36	85			664			78	128				6					558	168			79	301
D	1	304		185	1	2,239	602		597	120		1			911						132		188
E	175	410		203		536	1,629		474			1,023					194	2	1	2	209
F	1	157			100			1,372			108		485						305		194	2	119
G	33	791		298	141	572	548		3,569									827	683	2	265	73
H		131				82				1,021			104		120	234	286	804					356
I		179				1		98			1,501	41	251	288	114			49	110	597	976
K	77	298				1	857				30	1,464		107	374		180	532	3	196	1
L	52	431		1				557		114	212		5,523	187		1,031	127	242	391		346	49	2
M		138		1		1				1	459	135	236	29	6			139	1	469	425		1
N		153		1		687				117	101	414		1	1,458			3	458	192			92
P		486		222					1	153			1,213			4,026	162	130	823	195
Q	823	234		1			169			357		198	139			204	1,525	740				1
R	320	516			781				642	918	69	526	212	90	2	168	825	3,433	294	84		495
S	59	489		359	177			365	559	2	100	10	467	1	523	693		327	3,569	325		39	139
T		272		1,446			1		1		686	140		493	141	366		96	309	2,856
V		297		1,535		124	131	109	434		1,116		325	402		1		1			2,652		1
W	356	64			88				141				52					415	31		1	16
Y	98	120			287	150		84		307	2		4		56				112			1	1,055