3300002035_4 - 12 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00007_3300002.. (original name was: 3300002035.a:LBB22012_10000013)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	bacteriocin	32,116	43,078

c00008_3300002.. (original name was: 3300002035.a:LBB22012_10002720)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	NRPS	1	6,799

c00010_3300002.. (original name was: 3300002035.a:LBB22012_10000004)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	NRPS	312,775	352,505

c00014_3300002.. (original name was: 3300002035.a:LBB22012_10000012)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	NRPS	110,633	198,256

c00026_3300002.. (original name was: 3300002035.a:LBB22012_10000055)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	resorcinol	26,188	67,303

c00028_3300002.. (original name was: 3300002035.a:LBB22012_10000019)

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	bacteriocin	13,417	24,496
Region 28.2	NRPS	165,243	186,857

c00030_3300002.. (original name was: 3300002035.a:LBB22012_10004159)

Region	Type	From	To	Most similar known cluster		Similarity
Region 30.1	NRPS	1	5,060

c00032_3300002.. (original name was: 3300002035.a:LBB22012_10000018)

Region	Type	From	To	Most similar known cluster		Similarity
Region 32.1	hglE-KS	74,544	128,686

c00033_3300002.. (original name was: 3300002035.a:LBB22012_10000010)

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	LAP	84,365	106,524

c00034_3300002.. (original name was: 3300002035.a:LBB22012_10000034)

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	NRPS,arylpolyene	39,245	113,625

c00038_3300002.. (original name was: 3300002035.a:LBB22012_10000033)

Region	Type	From	To	Most similar known cluster		Similarity
Region 38.1	NRPS	1	29,971

Region	Type	From	To	Similarity
Region 7.1	bacteriocin	32,116	43,078
Region 8.1	NRPS	1	6,799
Region 10.1	NRPS	312,775	352,505
Region 14.1	NRPS	110,633	198,256
Region 26.1	resorcinol	26,188	67,303
Region 28.1	bacteriocin	13,417	24,496
Region 28.2	NRPS	165,243	186,857
Region 30.1	NRPS	1	5,060
Region 32.1	hglE-KS	74,544	128,686
Region 33.1	LAP	84,365	106,524
Region 34.1	NRPS,arylpolyene	39,245	113,625
Region 38.1	NRPS	1	29,971

No secondary metabolite regions were found in these records:: c00001_3300002.. (original name was: 3300002035.a:LBB22012_10000099); c00002_3300002.. (original name was: 3300002035.a:LBB22012_10000007); c00003_3300002.. (original name was: 3300002035.a:LBB22012_10000024); c00004_3300002.. (original name was: 3300002035.a:LBB22012_10000006); c00005_3300002.. (original name was: 3300002035.a:LBB22012_10000736); c00006_3300002.. (original name was: 3300002035.a:LBB22012_10000031); c00009_3300002.. (original name was: 3300002035.a:LBB22012_10000112); c00011_3300002.. (original name was: 3300002035.a:LBB22012_10000015); c00012_3300002.. (original name was: 3300002035.a:LBB22012_10000029); c00013_3300002.. (original name was: 3300002035.a:LBB22012_10000127); c00015_3300002.. (original name was: 3300002035.a:LBB22012_10000043); c00016_3300002.. (original name was: 3300002035.a:LBB22012_10000072); c00017_3300002.. (original name was: 3300002035.a:LBB22012_10000321); c00018_3300002.. (original name was: 3300002035.a:LBB22012_10000973); c00019_3300002.. (original name was: 3300002035.a:LBB22012_10000140); c00020_3300002.. (original name was: 3300002035.a:LBB22012_10000030); c00021_3300002.. (original name was: 3300002035.a:LBB22012_10000137); c00022_3300002.. (original name was: 3300002035.a:LBB22012_10000028); c00023_3300002.. (original name was: 3300002035.a:LBB22012_10000164); c00024_3300002.. (original name was: 3300002035.a:LBB22012_10001044); c00025_3300002.. (original name was: 3300002035.a:LBB22012_10001163); c00027_3300002.. (original name was: 3300002035.a:LBB22012_10001820); c00029_3300002.. (original name was: 3300002035.a:LBB22012_10000020); c00031_3300002.. (original name was: 3300002035.a:LBB22012_10000022); c00035_3300002.. (original name was: 3300002035.a:LBB22012_10000085); c00036_3300002.. (original name was: 3300002035.a:LBB22012_10000303); c00037_3300002.. (original name was: 3300002035.a:LBB22012_10000050); c00039_3300002.. (original name was: 3300002035.a:LBB22012_10000023)

Compact view

c00007_3300002.. - Region 1 - bacteriocin

Download region GenBank file

Location: 32,116 - 43,078 nt. (total: 10,963 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00008_3300002.. - Region 1 - NRPS

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Location: 1 - 6,799 nt. (total: 6,799 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 6799:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg8_2

Search NORINE for peptide: strict or relaxed

AMP-binding (548..958): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DvENiGaINK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 70% (weak)

AMP-binding (1645..1984): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DASTVAAVCK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

c00010_3300002.. - Region 1 - NRPS

Download region GenBank file

Location: 312,775 - 352,505 nt. (total: 39,731 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 312774 - 352505:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg10_300

Search NORINE for peptide: strict or relaxed

AMP-binding (682..1078): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DlpQVGavWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 60% (weak)

c00014_3300002.. - Region 1 - NRPS

Download region GenBank file

Location: 110,633 - 198,256 nt. (total: 87,624 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 110632 - 198256:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (asp) + (X - ser) + (asp - gly) + (asp)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg14_127

CAL_domain (154..460): pk

minowa: NH2

Prediction, score:

NH2: 59.8
fatty_acid: 39.7
Acetyl-CoA: 37.0
shikimic_acid: 0.0
AHBA: 0.0

ctg14_128

Search NORINE for peptide: strict or relaxed

AMP-binding (521..919): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKiGHIGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 90% (moderate)

ctg14_129

Search NORINE for peptide: strict or relaxed

AMP-binding (490..897): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiESIGtVtK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 70% (weak)

AMP-binding (2208..2611): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

ctg14_130

Search NORINE for peptide: strict or relaxed

AMP-binding (507..912): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKfGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 90% (moderate)

AMP-binding (1674..2072): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQVGVvWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 90% (moderate)

ctg14_131

Search NORINE for peptide: strict or relaxed

AMP-binding (455..843): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

ctg14_147

Search NORINE for peptide: strict or relaxed

AMP-binding (39..396): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DyypTtmrVK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 40% (weak)

c00026_3300002.. - Region 1 - resorcinol

Download region GenBank file

Location: 26,188 - 67,303 nt. (total: 41,116 nt) Show pHMM detection rules used

resorcinol: DarB

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00028_3300002.. - Region 1 - bacteriocin

Download region GenBank file

Location: 13,417 - 24,496 nt. (total: 11,080 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00028_3300002.. - Region 2 - NRPS

Download region GenBank file

Location: 165,243 - 186,857 nt. (total: 21,615 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00030_3300002.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 5,060 nt. (total: 5,060 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 5060:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (tyr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg30_2

Search NORINE for peptide: strict or relaxed

AMP-binding (487..892): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DASTVAAVCK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

c00032_3300002.. - Region 1 - hglE-KS

Download region GenBank file

Location: 74,544 - 128,686 nt. (total: 54,143 nt) Show pHMM detection rules used

hglE-KS: (hglE or hglD)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00033_3300002.. - Region 1 - LAP

Download region GenBank file

Location: 84,365 - 106,524 nt. (total: 22,160 nt) Show pHMM detection rules used

LAP: ((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00034_3300002.. - Region 1 - NRPS,arylpolyene

Download region GenBank file

Location: 39,245 - 113,625 nt. (total: 74,381 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 39244 - 113625:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 39244 - 87120:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg34_57

CAL_domain (164..484): pk

minowa: NH2

Prediction, score:

NH2: 135.9
Acetyl-CoA: 36.3
fatty_acid: 20.6
shikimic_acid: 0.0
AHBA: 0.0

ctg34_60

Search NORINE for peptide: strict or relaxed

AMP-binding (480..876): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGVIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

ctg34_88

Search NORINE for peptide: strict or relaxed

AMP-binding (119..297): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: glFFspnyYK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 40% (weak)

c00038_3300002.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 29,971 nt. (total: 29,971 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 29971:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (thr) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg38_1

Search NORINE for peptide: strict or relaxed

AMP-binding (563..978): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg38_3

Search NORINE for peptide: strict or relaxed

AMP-binding (508..915): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: aVknIAnfnK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 40% (weak)