3300002037_7 - 10 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00002_3300002.. (original name was: 3300002037.a:BIB12012_10005501)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	NRPS	1	5,108

c00019_3300002.. (original name was: 3300002037.a:BIB12012_10000608)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	NRPS	1	26,629

c00029_3300002.. (original name was: 3300002037.a:BIB12012_10000294)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	arylpolyene	1	28,479

c00040_3300002.. (original name was: 3300002037.a:BIB12012_10000134)

Region	Type	From	To	Most similar known cluster		Similarity
Region 40.1	NRPS	1	54,727

c00050_3300002.. (original name was: 3300002037.a:BIB12012_10000944)

Region	Type	From	To	Most similar known cluster		Similarity
Region 50.1	LAP	1	13,802

c00072_3300002.. (original name was: 3300002037.a:BIB12012_10000058)

Region	Type	From	To	Most similar known cluster		Similarity
Region 72.1	NRPS	1	40,091

c00126_3300002.. (original name was: 3300002037.a:BIB12012_10000410)

Region	Type	From	To	Most similar known cluster		Similarity
Region 126.1	T1PKS,hglE-KS	1	33,476

c00143_3300002.. (original name was: 3300002037.a:BIB12012_10000474)

Region	Type	From	To	Most similar known cluster		Similarity
Region 143.1	bacteriocin	19,701	30,433

c00147_3300002.. (original name was: 3300002037.a:BIB12012_10003633)

Region	Type	From	To	Most similar known cluster		Similarity
Region 147.1	NRPS	1	7,050

c00150_3300002.. (original name was: 3300002037.a:BIB12012_10000167)

Region	Type	From	To	Most similar known cluster		Similarity
Region 150.1	bacteriocin	19,028	29,990

Region	Type	From	To	Similarity
Region 2.1	NRPS	1	5,108
Region 19.1	NRPS	1	26,629
Region 29.1	arylpolyene	1	28,479
Region 40.1	NRPS	1	54,727
Region 50.1	LAP	1	13,802
Region 72.1	NRPS	1	40,091
Region 126.1	T1PKS,hglE-KS	1	33,476
Region 143.1	bacteriocin	19,701	30,433
Region 147.1	NRPS	1	7,050
Region 150.1	bacteriocin	19,028	29,990

No secondary metabolite regions were found in these records:: c00001_3300002.. (original name was: 3300002037.a:BIB12012_10000472); c00003_3300002.. (original name was: 3300002037.a:BIB12012_10001773); c00004_3300002.. (original name was: 3300002037.a:BIB12012_10000281); c00005_3300002.. (original name was: 3300002037.a:BIB12012_10000329); c00006_3300002.. (original name was: 3300002037.a:BIB12012_10001383); c00007_3300002.. (original name was: 3300002037.a:BIB12012_10001073); c00008_3300002.. (original name was: 3300002037.a:BIB12012_10003119); c00009_3300002.. (original name was: 3300002037.a:BIB12012_10001296); c00010_3300002.. (original name was: 3300002037.a:BIB12012_10001311); c00011_3300002.. (original name was: 3300002037.a:BIB12012_10001107); c00012_3300002.. (original name was: 3300002037.a:BIB12012_10000713); c00013_3300002.. (original name was: 3300002037.a:BIB12012_10001158); c00014_3300002.. (original name was: 3300002037.a:BIB12012_10000192); c00015_3300002.. (original name was: 3300002037.a:BIB12012_10001437); c00016_3300002.. (original name was: 3300002037.a:BIB12012_10001290); c00017_3300002.. (original name was: 3300002037.a:BIB12012_10000124); c00018_3300002.. (original name was: 3300002037.a:BIB12012_10000651); c00020_3300002.. (original name was: 3300002037.a:BIB12012_10001565); c00021_3300002.. (original name was: 3300002037.a:BIB12012_10000125); c00022_3300002.. (original name was: 3300002037.a:BIB12012_10000839); c00023_3300002.. (original name was: 3300002037.a:BIB12012_10002412); c00024_3300002.. (original name was: 3300002037.a:BIB12012_10000676); c00025_3300002.. (original name was: 3300002037.a:BIB12012_10003801); c00026_3300002.. (original name was: 3300002037.a:BIB12012_10002065); c00027_3300002.. (original name was: 3300002037.a:BIB12012_10002256); c00028_3300002.. (original name was: 3300002037.a:BIB12012_10001048); c00030_3300002.. (original name was: 3300002037.a:BIB12012_10000298); c00031_3300002.. (original name was: 3300002037.a:BIB12012_10008274); c00032_3300002.. (original name was: 3300002037.a:BIB12012_10000236); c00033_3300002.. (original name was: 3300002037.a:BIB12012_10001632); c00034_3300002.. (original name was: 3300002037.a:BIB12012_10000338); c00035_3300002.. (original name was: 3300002037.a:BIB12012_10003700); c00036_3300002.. (original name was: 3300002037.a:BIB12012_10000392); c00037_3300002.. (original name was: 3300002037.a:BIB12012_10000623); c00038_3300002.. (original name was: 3300002037.a:BIB12012_10000199); c00039_3300002.. (original name was: 3300002037.a:BIB12012_10003487); c00041_3300002.. (original name was: 3300002037.a:BIB12012_10005440); c00042_3300002.. (original name was: 3300002037.a:BIB12012_10000128); c00043_3300002.. (original name was: 3300002037.a:BIB12012_10000723); c00044_3300002.. (original name was: 3300002037.a:BIB12012_10000837); c00045_3300002.. (original name was: 3300002037.a:BIB12012_10000516); c00046_3300002.. (original name was: 3300002037.a:BIB12012_10001869); c00047_3300002.. (original name was: 3300002037.a:BIB12012_10000219); c00048_3300002.. (original name was: 3300002037.a:BIB12012_10001369); c00049_3300002.. (original name was: 3300002037.a:BIB12012_10002518); c00051_3300002.. (original name was: 3300002037.a:BIB12012_10001551); c00052_3300002.. (original name was: 3300002037.a:BIB12012_10004744); c00053_3300002.. (original name was: 3300002037.a:BIB12012_10000579); c00054_3300002.. (original name was: 3300002037.a:BIB12012_10000528); c00055_3300002.. (original name was: 3300002037.a:BIB12012_12264031); c00056_3300002.. (original name was: 3300002037.a:BIB12012_10000377); c00057_3300002.. (original name was: 3300002037.a:BIB12012_10000502); c00058_3300002.. (original name was: 3300002037.a:BIB12012_12244379); c00059_3300002.. (original name was: 3300002037.a:BIB12012_12245642); c00060_3300002.. (original name was: 3300002037.a:BIB12012_10000251); c00061_3300002.. (original name was: 3300002037.a:BIB12012_10000143); c00062_3300002.. (original name was: 3300002037.a:BIB12012_10000262); c00063_3300002.. (original name was: 3300002037.a:BIB12012_10000060); c00064_3300002.. (original name was: 3300002037.a:BIB12012_10000331); c00065_3300002.. (original name was: 3300002037.a:BIB12012_10001577); c00066_3300002.. (original name was: 3300002037.a:BIB12012_10003160); c00067_3300002.. (original name was: 3300002037.a:BIB12012_10000079); c00068_3300002.. (original name was: 3300002037.a:BIB12012_10000017); c00069_3300002.. (original name was: 3300002037.a:BIB12012_10000860); c00070_3300002.. (original name was: 3300002037.a:BIB12012_10002959); c00071_3300002.. (original name was: 3300002037.a:BIB12012_10000177); c00073_3300002.. (original name was: 3300002037.a:BIB12012_12246351); c00074_3300002.. (original name was: 3300002037.a:BIB12012_10000209); c00075_3300002.. (original name was: 3300002037.a:BIB12012_10001921); c00076_3300002.. (original name was: 3300002037.a:BIB12012_10000776); c00077_3300002.. (original name was: 3300002037.a:BIB12012_10000983); c00078_3300002.. (original name was: 3300002037.a:BIB12012_10011118); c00079_3300002.. (original name was: 3300002037.a:BIB12012_10004188); c00080_3300002.. (original name was: 3300002037.a:BIB12012_10001830); c00081_3300002.. (original name was: 3300002037.a:BIB12012_10005026); c00082_3300002.. (original name was: 3300002037.a:BIB12012_10003654); c00083_3300002.. (original name was: 3300002037.a:BIB12012_10000853); c00084_3300002.. (original name was: 3300002037.a:BIB12012_10001005); c00085_3300002.. (original name was: 3300002037.a:BIB12012_10000757); c00086_3300002.. (original name was: 3300002037.a:BIB12012_10002057); c00087_3300002.. (original name was: 3300002037.a:BIB12012_10000480); c00088_3300002.. (original name was: 3300002037.a:BIB12012_10000362); c00089_3300002.. (original name was: 3300002037.a:BIB12012_10001600); c00090_3300002.. (original name was: 3300002037.a:BIB12012_10000650); c00091_3300002.. (original name was: 3300002037.a:BIB12012_12281682); c00092_3300002.. (original name was: 3300002037.a:BIB12012_10003701); c00093_3300002.. (original name was: 3300002037.a:BIB12012_10004783); c00094_3300002.. (original name was: 3300002037.a:BIB12012_10000835); c00095_3300002.. (original name was: 3300002037.a:BIB12012_10001201); c00096_3300002.. (original name was: 3300002037.a:BIB12012_10001823); c00097_3300002.. (original name was: 3300002037.a:BIB12012_10000176); c00098_3300002.. (original name was: 3300002037.a:BIB12012_10004358); c00099_3300002.. (original name was: 3300002037.a:BIB12012_10002417); c00100_3300002.. (original name was: 3300002037.a:BIB12012_10000372); c00101_3300002.. (original name was: 3300002037.a:BIB12012_10000533); c00102_3300002.. (original name was: 3300002037.a:BIB12012_10003121); c00103_3300002.. (original name was: 3300002037.a:BIB12012_10000346); c00104_3300002.. (original name was: 3300002037.a:BIB12012_10000267); c00105_3300002.. (original name was: 3300002037.a:BIB12012_10001801); c00106_3300002.. (original name was: 3300002037.a:BIB12012_10000980); c00107_3300002.. (original name was: 3300002037.a:BIB12012_10005820); c00108_3300002.. (original name was: 3300002037.a:BIB12012_10000217); c00109_3300002.. (original name was: 3300002037.a:BIB12012_10005884); c00110_3300002.. (original name was: 3300002037.a:BIB12012_10002927); c00111_3300002.. (original name was: 3300002037.a:BIB12012_10003414); c00112_3300002.. (original name was: 3300002037.a:BIB12012_10001501); c00113_3300002.. (original name was: 3300002037.a:BIB12012_10001235); c00114_3300002.. (original name was: 3300002037.a:BIB12012_10000766); c00115_3300002.. (original name was: 3300002037.a:BIB12012_10000379); c00116_3300002.. (original name was: 3300002037.a:BIB12012_10004428); c00117_3300002.. (original name was: 3300002037.a:BIB12012_12257056); c00118_3300002.. (original name was: 3300002037.a:BIB12012_10002960); c00119_3300002.. (original name was: 3300002037.a:BIB12012_10005289); c00120_3300002.. (original name was: 3300002037.a:BIB12012_10001618); c00121_3300002.. (original name was: 3300002037.a:BIB12012_10000907); c00122_3300002.. (original name was: 3300002037.a:BIB12012_10001530); c00123_3300002.. (original name was: 3300002037.a:BIB12012_12270533); c00124_3300002.. (original name was: 3300002037.a:BIB12012_10000278); c00125_3300002.. (original name was: 3300002037.a:BIB12012_10005326); c00127_3300002.. (original name was: 3300002037.a:BIB12012_10000925); c00128_3300002.. (original name was: 3300002037.a:BIB12012_10001514); c00129_3300002.. (original name was: 3300002037.a:BIB12012_10000643); c00130_3300002.. (original name was: 3300002037.a:BIB12012_10008443); c00131_3300002.. (original name was: 3300002037.a:BIB12012_10006630); c00132_3300002.. (original name was: 3300002037.a:BIB12012_10000792); c00133_3300002.. (original name was: 3300002037.a:BIB12012_10002657); c00134_3300002.. (original name was: 3300002037.a:BIB12012_10001697); c00135_3300002.. (original name was: 3300002037.a:BIB12012_10000250); c00136_3300002.. (original name was: 3300002037.a:BIB12012_10000774); c00137_3300002.. (original name was: 3300002037.a:BIB12012_10001229); c00138_3300002.. (original name was: 3300002037.a:BIB12012_10003479); c00139_3300002.. (original name was: 3300002037.a:BIB12012_10003931); c00140_3300002.. (original name was: 3300002037.a:BIB12012_10001928); c00141_3300002.. (original name was: 3300002037.a:BIB12012_10009766); c00142_3300002.. (original name was: 3300002037.a:BIB12012_10000087); c00144_3300002.. (original name was: 3300002037.a:BIB12012_10000105); c00145_3300002.. (original name was: 3300002037.a:BIB12012_10011543); c00146_3300002.. (original name was: 3300002037.a:BIB12012_10000694); c00148_3300002.. (original name was: 3300002037.a:BIB12012_10000073); c00149_3300002.. (original name was: 3300002037.a:BIB12012_10000702); c00151_3300002.. (original name was: 3300002037.a:BIB12012_10009570); c00152_3300002.. (original name was: 3300002037.a:BIB12012_10000430); c00153_3300002.. (original name was: 3300002037.a:BIB12012_12262427); c00154_3300002.. (original name was: 3300002037.a:BIB12012_10001939); c00155_3300002.. (original name was: 3300002037.a:BIB12012_10001332); c00156_3300002.. (original name was: 3300002037.a:BIB12012_10000241); c00157_3300002.. (original name was: 3300002037.a:BIB12012_10001685); c00158_3300002.. (original name was: 3300002037.a:BIB12012_10010201); c00159_3300002.. (original name was: 3300002037.a:BIB12012_10000120); c00160_3300002.. (original name was: 3300002037.a:BIB12012_10000034); c00161_3300002.. (original name was: 3300002037.a:BIB12012_10001422); c00162_3300002.. (original name was: 3300002037.a:BIB12012_10000053); c00163_3300002.. (original name was: 3300002037.a:BIB12012_10001615); c00164_3300002.. (original name was: 3300002037.a:BIB12012_10004422); c00165_3300002.. (original name was: 3300002037.a:BIB12012_10001668); c00166_3300002.. (original name was: 3300002037.a:BIB12012_10004522); c00167_3300002.. (original name was: 3300002037.a:BIB12012_10003775); c00168_3300002.. (original name was: 3300002037.a:BIB12012_10002300); c00169_3300002.. (original name was: 3300002037.a:BIB12012_10000349); c00170_3300002.. (original name was: 3300002037.a:BIB12012_10000459); c00171_3300002.. (original name was: 3300002037.a:BIB12012_10001030)

Compact view

c00002_3300002.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 5,108 nt. (total: 5,108 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 5108:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (tyr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg2_3

Search NORINE for peptide: strict or relaxed

AMP-binding (3..230): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DASTVAAVCK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

c00019_3300002.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 26,629 nt. (total: 26,629 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 26629:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (thr) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg19_18

Search NORINE for peptide: strict or relaxed

AMP-binding (508..915): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: aVknIAnfnK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 40% (weak)

ctg19_20

Search NORINE for peptide: strict or relaxed

AMP-binding (601..1016): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

c00029_3300002.. - Region 1 - arylpolyene

Download region GenBank file

Location: 1 - 28,479 nt. (total: 28,479 nt) Show pHMM detection rules used

Region on contig edge.

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

c00040_3300002.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 54,727 nt. (total: 54,727 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 54727:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (asp) + (X - ser) + (asp - gly) + (asp)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg40_3

CAL_domain (154..460): pk

minowa: NH2

Prediction, score:

NH2: 61.0
fatty_acid: 41.8
Acetyl-CoA: 37.0
shikimic_acid: 0.0
AHBA: 0.0

ctg40_4

Search NORINE for peptide: strict or relaxed

AMP-binding (521..919): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKiGHIGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 90% (moderate)

ctg40_5

Search NORINE for peptide: strict or relaxed

AMP-binding (490..897): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiESIGtVtK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 70% (weak)

AMP-binding (2208..2611): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

ctg40_6

Search NORINE for peptide: strict or relaxed

AMP-binding (506..911): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKfGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 90% (moderate)

AMP-binding (1664..2062): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQVGVvWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 90% (moderate)

ctg40_7

Search NORINE for peptide: strict or relaxed

AMP-binding (452..843): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

ctg40_18

Search NORINE for peptide: strict or relaxed

AMP-binding (39..396): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DyypTtmrVK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 40% (weak)

c00050_3300002.. - Region 1 - LAP

Download region GenBank file

Location: 1 - 13,802 nt. (total: 13,802 nt) Show pHMM detection rules used

Region on contig edge.

LAP: ((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

c00072_3300002.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 40,091 nt. (total: 40,091 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 40091:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg72_13

Search NORINE for peptide: strict or relaxed

AMP-binding (480..876): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGVIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

ctg72_16

CAL_domain (164..484): pk

minowa: NH2

Prediction, score:

NH2: 135.8
Acetyl-CoA: 36.2
fatty_acid: 20.5
shikimic_acid: 0.0
AHBA: 0.0

c00126_3300002.. - Region 1 - T1PKS,hglE-KS

Download region GenBank file

Location: 1 - 33,476 nt. (total: 33,476 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
hglE-KS: (hglE or hglD)

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 33476:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg126_8

PKS_AT (1043..1300): mxmal

minowa: Methoxymalonyl-CoA

Prediction, score:

Methoxymalonyl-CoA: 9.5
trans-1,2-CPDA: 0.0
inactive: 0.0
fatty_acid: 0.0
Propionyl-CoA: 0.0
Methylmalonyl-CoA: 0.0
Malonyl-CoA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ATSignature: (unknown)

No matches above 50%

ctg126_9

PKS_AT (567..867): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 103.2
Methoxymalonyl-CoA: 33.3
inactive: 31.4
Methylmalonyl-CoA: 22.0
Propionyl-CoA: 16.7
CHC-CoA: 14.4
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 79.2%; inactive: 70.8%; 2-Rhyd-Malonyl-CoA: 54.2%

c00143_3300002.. - Region 1 - bacteriocin

Download region GenBank file

Location: 19,701 - 30,433 nt. (total: 10,733 nt) Show pHMM detection rules used

Region on contig edge.

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

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core biosynthetic genes

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Gene details

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c00147_3300002.. - Region 1 - NRPS

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Location: 1 - 7,050 nt. (total: 7,050 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 7050:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg147_2

Search NORINE for peptide: strict or relaxed

AMP-binding (548..966): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DvENiGaINK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 70% (weak)

AMP-binding (1656..2055): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DASTVAAVCK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

c00150_3300002.. - Region 1 - bacteriocin

Download region GenBank file

Location: 19,028 - 29,990 nt. (total: 10,963 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

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Gene details

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