3300005290_3 - 34 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00002_3300005.. (original name was: 3300005290.a:Ga0065712_10007460)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	NRPS	1	5,636

c00005_3300005.. (original name was: 3300005290.a:Ga0065712_10069123)

Region	Type	From	To	Most similar known cluster		Similarity
Region 5.1	NRPS	1	7,973

c00006_3300005.. (original name was: 3300005290.a:Ga0065712_10068230)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	NRPS	1	12,625

c00008_3300005.. (original name was: 3300005290.a:Ga0065712_10071610)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	NRPS	1	5,160

c00010_3300005.. (original name was: 3300005290.a:Ga0065712_10000118)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	T3PKS	1	27,520

c00011_3300005.. (original name was: 3300005290.a:Ga0065712_10000117)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	NRPS-like	1	41,165

c00012_3300005.. (original name was: 3300005290.a:Ga0065712_10067732)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	NRPS	61,164	106,287

c00016_3300005.. (original name was: 3300005290.a:Ga0065712_10071192)

Region	Type	From	To	Most similar known cluster		Similarity
Region 16.1	NRPS	1	5,412

c00018_3300005.. (original name was: 3300005290.a:Ga0065712_10067872)

Region	Type	From	To	Most similar known cluster		Similarity
Region 18.1	NRPS,bacteriocin	1	24,008

c00020_3300005.. (original name was: 3300005290.a:Ga0065712_10067733)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	T1PKS	1	34,487
Region 20.2	phosphonate,linaridin,bacteriocin	48,869	105,684

c00023_3300005.. (original name was: 3300005290.a:Ga0065712_10000120)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	lassopeptide	72,526	95,279

c00030_3300005.. (original name was: 3300005290.a:Ga0065712_10000187)

Region	Type	From	To	Most similar known cluster		Similarity
Region 30.1	NRPS	1	26,615

c00037_3300005.. (original name was: 3300005290.a:Ga0065712_10000116)

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	NRPS	1	30,315
Region 37.2	NRPS,T1PKS	43,633	140,894

c00041_3300005.. (original name was: 3300005290.a:Ga0065712_10067731)

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	NRPS	3,420	65,730

c00043_3300005.. (original name was: 3300005290.a:Ga0065712_10001218)

Region	Type	From	To	Most similar known cluster		Similarity
Region 43.1	NRPS	1	6,852

c00049_3300005.. (original name was: 3300005290.a:Ga0065712_10000119)

Region	Type	From	To	Most similar known cluster		Similarity
Region 49.1	linaridin	121,883	137,052

c00057_3300005.. (original name was: 3300005290.a:Ga0065712_10068431)

Region	Type	From	To	Most similar known cluster		Similarity
Region 57.1	NRPS	1	10,705

c00058_3300005.. (original name was: 3300005290.a:Ga0065712_10000126)

Region	Type	From	To	Most similar known cluster		Similarity
Region 58.1	NRPS-like	49,780	75,495

c00059_3300005.. (original name was: 3300005290.a:Ga0065712_10000125)

Region	Type	From	To	Most similar known cluster		Similarity
Region 59.1	NRPS-like	37,639	81,248

c00070_3300005.. (original name was: 3300005290.a:Ga0065712_10000134)

Region	Type	From	To	Most similar known cluster		Similarity
Region 70.1	NRPS,T1PKS	1	66,523

c00075_3300005.. (original name was: 3300005290.a:Ga0065712_10067901)

Region	Type	From	To	Most similar known cluster		Similarity
Region 75.1	NRPS-like	1	21,191

c00079_3300005.. (original name was: 3300005290.a:Ga0065712_10000131)

Region	Type	From	To	Most similar known cluster		Similarity
Region 79.1	NRPS	1	60,977

c00083_3300005.. (original name was: 3300005290.a:Ga0065712_10000245)

Region	Type	From	To	Most similar known cluster		Similarity
Region 83.1	NRPS	1	18,467

c00094_3300005.. (original name was: 3300005290.a:Ga0065712_10067830)

Region	Type	From	To	Most similar known cluster		Similarity
Region 94.1	NRPS	745	27,610

c00095_3300005.. (original name was: 3300005290.a:Ga0065712_10068419)

Region	Type	From	To	Most similar known cluster		Similarity
Region 95.1	NRPS	1	10,775

c00097_3300005.. (original name was: 3300005290.a:Ga0065712_10072485)

Region	Type	From	To	Most similar known cluster		Similarity
Region 97.1	NRPS	1	4,737

c00099_3300005.. (original name was: 3300005290.a:Ga0065712_10067729)

Region	Type	From	To	Most similar known cluster		Similarity
Region 99.1	NRPS-like	1	25,360

c00100_3300005.. (original name was: 3300005290.a:Ga0065712_10000007)

Region	Type	From	To	Most similar known cluster		Similarity
Region 100.1	ladderane	49,631	90,857

c00106_3300005.. (original name was: 3300005290.a:Ga0065712_10000030)

Region	Type	From	To	Most similar known cluster		Similarity
Region 106.1	NRPS	1	42,830
Region 106.2	NRPS	60,832	115,474

c00107_3300005.. (original name was: 3300005290.a:Ga0065712_10000128)

Region	Type	From	To	Most similar known cluster		Similarity
Region 107.1	NRPS,T1PKS	16,073	121,732

c00113_3300005.. (original name was: 3300005290.a:Ga0065712_10000115)

Region	Type	From	To	Most similar known cluster		Similarity
Region 113.1	NRPS	1	22,018

Region	Type	From	To	Similarity
Region 2.1	NRPS	1	5,636
Region 5.1	NRPS	1	7,973
Region 6.1	NRPS	1	12,625
Region 8.1	NRPS	1	5,160
Region 10.1	T3PKS	1	27,520
Region 11.1	NRPS-like	1	41,165
Region 12.1	NRPS	61,164	106,287
Region 16.1	NRPS	1	5,412
Region 18.1	NRPS,bacteriocin	1	24,008
Region 20.1	T1PKS	1	34,487
Region 20.2	phosphonate,linaridin,bacteriocin	48,869	105,684
Region 23.1	lassopeptide	72,526	95,279
Region 30.1	NRPS	1	26,615
Region 37.1	NRPS	1	30,315
Region 37.2	NRPS,T1PKS	43,633	140,894
Region 41.1	NRPS	3,420	65,730
Region 43.1	NRPS	1	6,852
Region 49.1	linaridin	121,883	137,052
Region 57.1	NRPS	1	10,705
Region 58.1	NRPS-like	49,780	75,495
Region 59.1	NRPS-like	37,639	81,248
Region 70.1	NRPS,T1PKS	1	66,523
Region 75.1	NRPS-like	1	21,191
Region 79.1	NRPS	1	60,977
Region 83.1	NRPS	1	18,467
Region 94.1	NRPS	745	27,610
Region 95.1	NRPS	1	10,775
Region 97.1	NRPS	1	4,737
Region 99.1	NRPS-like	1	25,360
Region 100.1	ladderane	49,631	90,857
Region 106.1	NRPS	1	42,830
Region 106.2	NRPS	60,832	115,474
Region 107.1	NRPS,T1PKS	16,073	121,732
Region 113.1	NRPS	1	22,018

No secondary metabolite regions were found in these records:: c00001_3300005.. (original name was: 3300005290.a:Ga0065712_10003672); c00003_3300005.. (original name was: 3300005290.a:Ga0065712_10074811); c00004_3300005.. (original name was: 3300005290.a:Ga0065712_10000613); c00007_3300005.. (original name was: 3300005290.a:Ga0065712_10000002); c00009_3300005.. (original name was: 3300005290.a:Ga0065712_10067932); c00013_3300005.. (original name was: 3300005290.a:Ga0065712_10000158); c00014_3300005.. (original name was: 3300005290.a:Ga0065712_10068069); c00015_3300005.. (original name was: 3300005290.a:Ga0065712_10000127); c00017_3300005.. (original name was: 3300005290.a:Ga0065712_10068918); c00019_3300005.. (original name was: 3300005290.a:Ga0065712_10000133); c00021_3300005.. (original name was: 3300005290.a:Ga0065712_10067726); c00022_3300005.. (original name was: 3300005290.a:Ga0065712_10067817); c00024_3300005.. (original name was: 3300005290.a:Ga0065712_10000246); c00025_3300005.. (original name was: 3300005290.a:Ga0065712_10001357); c00026_3300005.. (original name was: 3300005290.a:Ga0065712_10067851); c00027_3300005.. (original name was: 3300005290.a:Ga0065712_10067923); c00028_3300005.. (original name was: 3300005290.a:Ga0065712_10067748); c00029_3300005.. (original name was: 3300005290.a:Ga0065712_10067766); c00031_3300005.. (original name was: 3300005290.a:Ga0065712_10067784); c00032_3300005.. (original name was: 3300005290.a:Ga0065712_10000137); c00033_3300005.. (original name was: 3300005290.a:Ga0065712_10067902); c00034_3300005.. (original name was: 3300005290.a:Ga0065712_10000136); c00035_3300005.. (original name was: 3300005290.a:Ga0065712_10000135); c00036_3300005.. (original name was: 3300005290.a:Ga0065712_10000165); c00038_3300005.. (original name was: 3300005290.a:Ga0065712_10000121); c00039_3300005.. (original name was: 3300005290.a:Ga0065712_10068668); c00040_3300005.. (original name was: 3300005290.a:Ga0065712_10067750); c00042_3300005.. (original name was: 3300005290.a:Ga0065712_10000129); c00044_3300005.. (original name was: 3300005290.a:Ga0065712_10000159); c00045_3300005.. (original name was: 3300005290.a:Ga0065712_10001045); c00046_3300005.. (original name was: 3300005290.a:Ga0065712_10068643); c00047_3300005.. (original name was: 3300005290.a:Ga0065712_10068192); c00048_3300005.. (original name was: 3300005290.a:Ga0065712_10000144); c00050_3300005.. (original name was: 3300005290.a:Ga0065712_10073277); c00051_3300005.. (original name was: 3300005290.a:Ga0065712_10000130); c00052_3300005.. (original name was: 3300005290.a:Ga0065712_10068266); c00053_3300005.. (original name was: 3300005290.a:Ga0065712_10000140); c00054_3300005.. (original name was: 3300005290.a:Ga0065712_10067741); c00055_3300005.. (original name was: 3300005290.a:Ga0065712_10067746); c00056_3300005.. (original name was: 3300005290.a:Ga0065712_10000143); c00060_3300005.. (original name was: 3300005290.a:Ga0065712_10067730); c00061_3300005.. (original name was: 3300005290.a:Ga0065712_10067937); c00062_3300005.. (original name was: 3300005290.a:Ga0065712_10000163); c00063_3300005.. (original name was: 3300005290.a:Ga0065712_10000964); c00064_3300005.. (original name was: 3300005290.a:Ga0065712_10000114); c00065_3300005.. (original name was: 3300005290.a:Ga0065712_10067734); c00066_3300005.. (original name was: 3300005290.a:Ga0065712_10068164); c00067_3300005.. (original name was: 3300005290.a:Ga0065712_10067861); c00068_3300005.. (original name was: 3300005290.a:Ga0065712_10067728); c00069_3300005.. (original name was: 3300005290.a:Ga0065712_10000150); c00071_3300005.. (original name was: 3300005290.a:Ga0065712_10000112); c00072_3300005.. (original name was: 3300005290.a:Ga0065712_10000141); c00073_3300005.. (original name was: 3300005290.a:Ga0065712_10000176); c00074_3300005.. (original name was: 3300005290.a:Ga0065712_10067792); c00076_3300005.. (original name was: 3300005290.a:Ga0065712_10070162); c00077_3300005.. (original name was: 3300005290.a:Ga0065712_10067739); c00078_3300005.. (original name was: 3300005290.a:Ga0065712_10067947); c00080_3300005.. (original name was: 3300005290.a:Ga0065712_10067821); c00081_3300005.. (original name was: 3300005290.a:Ga0065712_10067737); c00082_3300005.. (original name was: 3300005290.a:Ga0065712_10000175); c00084_3300005.. (original name was: 3300005290.a:Ga0065712_10068446); c00085_3300005.. (original name was: 3300005290.a:Ga0065712_10067727); c00086_3300005.. (original name was: 3300005290.a:Ga0065712_10070507); c00087_3300005.. (original name was: 3300005290.a:Ga0065712_10067742); c00088_3300005.. (original name was: 3300005290.a:Ga0065712_10000480); c00089_3300005.. (original name was: 3300005290.a:Ga0065712_10000172); c00090_3300005.. (original name was: 3300005290.a:Ga0065712_10000138); c00091_3300005.. (original name was: 3300005290.a:Ga0065712_10067738); c00092_3300005.. (original name was: 3300005290.a:Ga0065712_10067985); c00093_3300005.. (original name was: 3300005290.a:Ga0065712_10068047); c00096_3300005.. (original name was: 3300005290.a:Ga0065712_10068401); c00098_3300005.. (original name was: 3300005290.a:Ga0065712_10000113); c00101_3300005.. (original name was: 3300005290.a:Ga0065712_10067761); c00102_3300005.. (original name was: 3300005290.a:Ga0065712_10000190); c00103_3300005.. (original name was: 3300005290.a:Ga0065712_10000123); c00104_3300005.. (original name was: 3300005290.a:Ga0065712_10067736); c00105_3300005.. (original name was: 3300005290.a:Ga0065712_10067912); c00108_3300005.. (original name was: 3300005290.a:Ga0065712_10067799); c00109_3300005.. (original name was: 3300005290.a:Ga0065712_10068020); c00110_3300005.. (original name was: 3300005290.a:Ga0065712_10067735); c00111_3300005.. (original name was: 3300005290.a:Ga0065712_10067743); c00112_3300005.. (original name was: 3300005290.a:Ga0065712_10000122)

Compact view

c00002_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 5,636 nt. (total: 5,636 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 5636:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg2_1

Search NORINE for peptide: strict or relaxed

AMP-binding (574..986): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiWeItAdDK
Nearest Stachelhaus code:: arg
Stachelhaus code match:: 60% (weak)

c00005_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 7,973 nt. (total: 7,973 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 7973:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg5_1

Search NORINE for peptide: strict or relaxed

AMP-binding (468..869): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLVDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (1533..1948): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

c00006_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 12,625 nt. (total: 12,625 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 12625:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg6_1

Search NORINE for peptide: strict or relaxed

AMP-binding (461..861): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAKDLGVVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (2098..2497): X

NRPSPredictor2: ile, val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWLGCTFK
Nearest Stachelhaus code:: val, ile
Stachelhaus code match:: 100% (strong)

AMP-binding (3160..3567): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

c00008_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 5,160 nt. (total: 5,160 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00010_3300005.. - Region 1 - T3PKS

Download region GenBank file

Location: 1 - 27,520 nt. (total: 27,520 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00011_3300005.. - Region 1 - NRPS-like

Download region GenBank file

Location: 1 - 41,165 nt. (total: 41,165 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 41165:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg11_17

Search NORINE for peptide: strict or relaxed

AMP-binding (33..470): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: ayvVVAGgaK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 50% (weak)

c00012_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 61,164 - 106,287 nt. (total: 45,124 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 61163 - 106287:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - asp)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg12_65

Search NORINE for peptide: strict or relaxed

AMP-binding (30..421): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: alinWGaLiK
Nearest Stachelhaus code:: phg
Stachelhaus code match:: 40% (weak)

AMP-binding (1101..1505): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

c00016_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 5,412 nt. (total: 5,412 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00018_3300005.. - Region 1 - NRPS,bacteriocin

Download region GenBank file

Location: 1 - 24,008 nt. (total: 24,008 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

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resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 24008:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg18_20

Search NORINE for peptide: strict or relaxed

AMP-binding (519..919): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DALWLGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 100% (strong)

c00020_3300005.. - Region 1 - T1PKS

Download region GenBank file

Location: 1 - 34,487 nt. (total: 34,487 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

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Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 34487:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg20_6

PKS_AT (607..850): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 75.0%; Methylmalonyl-CoA: 62.5%; Propionyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 89.6
Methoxymalonyl-CoA: 58.4
Methylmalonyl-CoA: 46.9
inactive: 42.6
Propionyl-CoA: 21.2
CHC-CoA: 16.6
fatty_acid: 13.7
Ethylmalonyl-CoA: 13.1
trans-1,2-CPDA: 11.3
Acetyl-CoA: 10.4
Benzoyl-CoA: 10.3
Isobutyryl-CoA: 7.9
2-Methylbutyryl-CoA: 7.4
3-Methylbutyryl-CoA: 0.0

c00020_3300005.. - Region 2 - bacteriocin,linaridin,phosphonate

Download region GenBank file

Location: 48,869 - 105,684 nt. (total: 56,816 nt) Show pHMM detection rules used

phosphonate: phosphonates
linaridin: (cypemycin or cypI)
bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

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c00023_3300005.. - Region 1 - lassopeptide

Download region GenBank file

Location: 72,526 - 95,279 nt. (total: 22,754 nt) Show pHMM detection rules used

lassopeptide: (PF13471 and Asn_synthase or micJ25 or mcjC)

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Lasso peptides

Lasso peptide predictions

Lassopeptides - No core peptides found.

Lasso peptides

Core peptide predictions

No core peptides found.

c00030_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 26,615 nt. (total: 26,615 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 26615:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val) + (ala)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg30_1

Search NORINE for peptide: strict or relaxed

AMP-binding (743..1135): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

ctg30_5

Search NORINE for peptide: strict or relaxed

AMP-binding (463..866): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWLGdTFK
Nearest Stachelhaus code:: val, ile
Stachelhaus code match:: 90% (moderate)

c00037_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 30,315 nt. (total: 30,315 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 30315:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ala) + (D-asn)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg37_1

Search NORINE for peptide: strict or relaxed

AMP-binding (66..457): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

ctg37_4

Search NORINE for peptide: strict or relaxed

AMP-binding (475..879): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 100% (strong)

c00037_3300005.. - Region 2 - NRPS,T1PKS

Download region GenBank file

Location: 43,633 - 140,894 nt. (total: 97,262 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 43632 - 140894:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (thr - val) + (asp) + (X - pro) + (ala - thr) + (glu) + (ccmal) + (ala - ala - ohmal) + (gly - cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg37_51

Search NORINE for peptide: strict or relaxed

AMP-binding (536..944): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (1612..2009): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAfWLGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

ctg37_52

Search NORINE for peptide: strict or relaxed

AMP-binding (513..918): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DsTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 80% (moderate)

ctg37_53

Search NORINE for peptide: strict or relaxed

AMP-binding (24..422): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: qqLLCgaIiK
Nearest Stachelhaus code:: aeo
Stachelhaus code match:: 50% (weak)

AMP-binding (1102..1510): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFvAqVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 80% (moderate)

ctg37_70

Search NORINE for peptide: strict or relaxed

CAL_domain (163..495): pk

minowa: NH2

Prediction, score:

NH2: 191.7
Acetyl-CoA: 37.6
fatty_acid: 12.3
shikimic_acid: 9.9
AHBA: 0.0

AMP-binding (1182..1574): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

AMP-binding (2237..2653): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg37_73

Search NORINE for peptide: strict or relaxed

AMP-binding (473..873): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAKDLGVVDK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

ctg37_74

PKS_AT (536..831): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 83.3%; Methylmalonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 181.6
inactive: 117.7
Methoxymalonyl-CoA: 60.9
Methylmalonyl-CoA: 50.7
Isobutyryl-CoA: 41.0
Propionyl-CoA: 39.6
Ethylmalonyl-CoA: 27.1
CHC-CoA: 27.1
2-Methylbutyryl-CoA: 24.1
Benzoyl-CoA: 22.7
trans-1,2-CPDA: 19.7
Acetyl-CoA: 16.1
fatty_acid: 11.8
3-Methylbutyryl-CoA: 10.4

ctg37_75

Search NORINE for peptide: strict or relaxed

AMP-binding (477..874): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

AMP-binding (1533..1925): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

PKS_AT (2656..2952): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 87.5%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 162.2
inactive: 119.7
Methoxymalonyl-CoA: 65.5
Methylmalonyl-CoA: 54.5
Propionyl-CoA: 33.1
Ethylmalonyl-CoA: 24.7
2-Methylbutyryl-CoA: 22.7
Benzoyl-CoA: 16.0
Isobutyryl-CoA: 14.5
CHC-CoA: 13.0
Acetyl-CoA: 12.5
fatty_acid: 11.9
trans-1,2-CPDA: 9.6
3-Methylbutyryl-CoA: 5.3

ctg37_76

Search NORINE for peptide: strict or relaxed

AMP-binding (486..880): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

AMP-binding (1551..1949): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNMSMIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

c00041_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 3,420 - 65,730 nt. (total: 62,311 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 3419 - 65730:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (X) + (X) + (pro)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg41_16

Search NORINE for peptide: strict or relaxed

AMP-binding (30..417): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: qqwgVfGtLK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 40% (weak)

ctg41_23

Search NORINE for peptide: strict or relaxed

AMP-binding (475..873): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFIgHVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 90% (moderate)

ctg41_24

Search NORINE for peptide: strict or relaxed

AMP-binding (495..901): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DLknFgTdiK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 50% (weak)

ctg41_25

Search NORINE for peptide: strict or relaxed

AMP-binding (515..908): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: saFFystPLK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 50% (weak)

ctg41_26

Search NORINE for peptide: strict or relaxed

AMP-binding (510..898): X

NRPSPredictor2: phe, trp, phg, tyr, bht

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAfTIAgIwK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 70% (weak)

c00043_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 6,852 nt. (total: 6,852 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 6852:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (asn)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg43_3

Search NORINE for peptide: strict or relaxed

AMP-binding (270..667): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 100% (strong)

c00049_3300005.. - Region 1 - linaridin

Download region GenBank file

Location: 121,883 - 137,052 nt. (total: 15,170 nt) Show pHMM detection rules used

Region on contig edge.

linaridin: (cypemycin or cypI)

Legend:

core biosynthetic genes

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c00057_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 10,705 nt. (total: 10,705 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 10705:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - tyr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg57_4

Search NORINE for peptide: strict or relaxed

AMP-binding (489..889): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DifQFGLIiK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 70% (weak)

AMP-binding (1553..1960): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DArsLsqMsK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 50% (weak)

c00058_3300005.. - Region 1 - NRPS-like

Download region GenBank file

Location: 49,780 - 75,495 nt. (total: 25,716 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 49779 - 75495:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg58_58

Search NORINE for peptide: strict or relaxed

AMP-binding (15..417): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: vfmvIGGslK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 40% (weak)

c00059_3300005.. - Region 1 - NRPS-like

Download region GenBank file

Location: 37,639 - 81,248 nt. (total: 43,610 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 37638 - 81248:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg59_55

Search NORINE for peptide: strict or relaxed

AMP-binding (569..1005): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: eFtviGGpVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 50% (weak)

c00070_3300005.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 1 - 66,523 nt. (total: 66,523 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

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Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 66523:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (X) + (D-thr) + (asn - ile - tyr) + (D-asn) + (D-asn) + (leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg70_2

Search NORINE for peptide: strict or relaxed

AMP-binding (325..726): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAqHvGGigK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 60% (weak)

ctg70_3

Search NORINE for peptide: strict or relaxed

AMP-binding (597..999): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNVGfVwK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 80% (moderate)

ctg70_4

Search NORINE for peptide: strict or relaxed

AMP-binding (440..842): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg70_9

Search NORINE for peptide: strict or relaxed

AMP-binding (254..650): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 100% (strong)

AMP-binding (1310..1710): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGVTFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

AMP-binding (2381..2778): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: tyr

Stachelhaus prediction details:

Stachelhaus sequence:: DASTVAAVCK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 100% (strong)

ctg70_10

PKS_AT (535..821): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 83.3%; inactive: 66.7%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 140.0
inactive: 97.3
Methoxymalonyl-CoA: 66.5
Methylmalonyl-CoA: 55.9
Propionyl-CoA: 41.5
Isobutyryl-CoA: 35.0
2-Methylbutyryl-CoA: 23.2
Acetyl-CoA: 18.4
Ethylmalonyl-CoA: 15.8
CHC-CoA: 15.5
fatty_acid: 11.5
trans-1,2-CPDA: 10.3
3-Methylbutyryl-CoA: 8.5
Benzoyl-CoA: 0.0

ctg70_11

Search NORINE for peptide: strict or relaxed

AMP-binding (1137..1539): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 100% (strong)

ctg70_22

Search NORINE for peptide: strict or relaxed

AMP-binding (466..869): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asn

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 100% (strong)

ctg70_23

Search NORINE for peptide: strict or relaxed

CAL_domain (175..501): pk

minowa: NH2

Prediction, score:

NH2: 174.9
Acetyl-CoA: 43.9
fatty_acid: 7.9
shikimic_acid: 0.0
AHBA: 0.0

AMP-binding (1174..1570): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGhVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 90% (moderate)

c00075_3300005.. - Region 1 - NRPS-like

Download region GenBank file

Location: 1 - 21,191 nt. (total: 21,191 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00079_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 60,977 nt. (total: 60,977 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 60977:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (thr - D-X) + (thr - X) + (X) + (X - asp) + (ile)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg79_8

Search NORINE for peptide: strict or relaxed

CAL_domain (52..483): pk

minowa: NH2

Prediction, score:

NH2: 211.6
fatty_acid: 30.5
AHBA: 11.8
Acetyl-CoA: 2.6
shikimic_acid: 2.2

AMP-binding (1180..1588): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (2259..2658): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DaddISLItK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 60% (weak)

ctg79_9

Search NORINE for peptide: strict or relaxed

AMP-binding (34..447): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (1111..1502): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DALaiGAVyK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 70% (weak)

ctg79_10

Search NORINE for peptide: strict or relaxed

AMP-binding (509..895): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DSaLiAEVwK
Nearest Stachelhaus code:: his
Stachelhaus code match:: 70% (weak)

ctg79_11

Search NORINE for peptide: strict or relaxed

AMP-binding (508..911): X

NRPSPredictor2: pro, pip

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DieHmGhVvK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 50% (weak)

AMP-binding (1621..2024): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgTKMGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 90% (moderate)

ctg79_12

Search NORINE for peptide: strict or relaxed

AMP-binding (487..887): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGVTFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

c00083_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 18,467 nt. (total: 18,467 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

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Show module domains

c00094_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 745 - 27,610 nt. (total: 26,866 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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NRPS/PKS domains

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c00095_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 10,775 nt. (total: 10,775 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

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Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 10775:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pro)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg95_6

Search NORINE for peptide: strict or relaxed

AMP-binding (355..758): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DahVItHVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 70% (weak)

c00097_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 4,737 nt. (total: 4,737 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

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c00099_3300005.. - Region 1 - NRPS-like

Download region GenBank file

Location: 1 - 25,360 nt. (total: 25,360 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

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c00100_3300005.. - Region 1 - ladderane

Download region GenBank file

Location: 49,631 - 90,857 nt. (total: 41,227 nt) Show pHMM detection rules used

ladderane: ladderane

Legend:

core biosynthetic genes

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c00106_3300005.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 42,830 nt. (total: 42,830 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

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Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 42830:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly) + (asp) + (D-asp - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg106_2

Search NORINE for peptide: strict or relaxed

AMP-binding (479..874): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

ctg106_4

Search NORINE for peptide: strict or relaxed

AMP-binding (458..861): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHIGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

ctg106_5

Search NORINE for peptide: strict or relaxed

AMP-binding (462..865): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

AMP-binding (2002..2320): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: eASqIAilwK
Nearest Stachelhaus code:: bht
Stachelhaus code match:: 50% (weak)

c00106_3300005.. - Region 2 - NRPS

Download region GenBank file

Location: 60,832 - 115,474 nt. (total: 54,643 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 60831 - 115474:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - asp) + (thr - ala)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg106_50

Search NORINE for peptide: strict or relaxed

AMP-binding (537..945): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (1614..2003): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

ctg106_51

Search NORINE for peptide: strict or relaxed

AMP-binding (31..420): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: sViDwGAliK
Nearest Stachelhaus code:: arg
Stachelhaus code match:: 50% (weak)

AMP-binding (1099..1503): asp

NRPSPredictor2: asp

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

ctg106_52

Search NORINE for peptide: strict or relaxed

AMP-binding (36..427): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: gIFVwgaVIK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 60% (weak)

c00107_3300005.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 16,073 - 121,732 nt. (total: 105,660 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 16072 - 121732:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (ala) + (X) + (ala-b) + (D-asn) + (ala) + (gly - ala) + (val) + (mal) + (X) + (X) + (thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg107_27

Search NORINE for peptide: strict or relaxed

AMP-binding (10..409): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: stGtrSSmiK
Nearest Stachelhaus code:: dab
Stachelhaus code match:: 40% (weak)

ctg107_28

Search NORINE for peptide: strict or relaxed

AMP-binding (472..862): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

ctg107_29

Search NORINE for peptide: strict or relaxed

AMP-binding (454..855): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

ctg107_30

Search NORINE for peptide: strict or relaxed

AMP-binding (506..907): ala-b

NRPSPredictor2: ala-b

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: VDWVtSLADK
Nearest Stachelhaus code:: ala-b
Stachelhaus code match:: 90% (moderate)

ctg107_32

Search NORINE for peptide: strict or relaxed

AMP-binding (432..825): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

ctg107_33

Search NORINE for peptide: strict or relaxed

AMP-binding (471..861): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

ctg107_34

Search NORINE for peptide: strict or relaxed

AMP-binding (476..870): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

AMP-binding (1527..1915): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

ctg107_35

Search NORINE for peptide: strict or relaxed

AMP-binding (496..894): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWIGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 100% (strong)

ctg107_58

CAL_domain (47..496): pk

minowa: NH2

Prediction, score:

NH2: 199.3
fatty_acid: 26.3
AHBA: 7.4
shikimic_acid: 0.0
Acetyl-CoA: -0.1

PKS_AT (1622..1917): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 95.8%; 2-Rhyd-Malonyl-CoA: 54.2%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 192.0
inactive: 159.4
Methoxymalonyl-CoA: 68.2
Methylmalonyl-CoA: 61.8
Propionyl-CoA: 45.2
Isobutyryl-CoA: 26.7
Acetyl-CoA: 25.6
Benzoyl-CoA: 25.4
2-Methylbutyryl-CoA: 24.6
trans-1,2-CPDA: 22.9
Ethylmalonyl-CoA: 22.2
CHC-CoA: 22.0
fatty_acid: 16.3
3-Methylbutyryl-CoA: 15.5

ctg107_60

Search NORINE for peptide: strict or relaxed

AMP-binding (430..842): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVenIGaItK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 60% (weak)

ctg107_61

Search NORINE for peptide: strict or relaxed

AMP-binding (434..831): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

ctg107_62

Search NORINE for peptide: strict or relaxed

AMP-binding (464..872): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

c00113_3300005.. - Region 1 - NRPS

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Location: 1 - 22,018 nt. (total: 22,018 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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core biosynthetic genes

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transport-related genes

regulatory genes

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NRPS/PKS domains

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