3300007120_3 - 7 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00013_3300007.. (original name was: 3300007120.a:Ga0102643_102909)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	bacteriocin	1	5,453

c00089_3300007.. (original name was: 3300007120.a:Ga0102643_101143)

Region	Type	From	To	Most similar known cluster		Similarity
Region 89.1	NRPS	1	11,960

c00110_3300007.. (original name was: 3300007120.a:Ga0102643_100059)

Region	Type	From	To	Most similar known cluster		Similarity
Region 110.1	NRPS	10,823	65,639

c00126_3300007.. (original name was: 3300007120.a:Ga0102643_100450)

Region	Type	From	To	Most similar known cluster		Similarity
Region 126.1	LAP	2,488	21,405

c00202_3300007.. (original name was: 3300007120.a:Ga0102643_100768)

Region	Type	From	To	Most similar known cluster		Similarity
Region 202.1	lanthipeptide	1	15,529

c00225_3300007.. (original name was: 3300007120.a:Ga0102643_100177)

Region	Type	From	To	Most similar known cluster		Similarity
Region 225.1	NRPS,T1PKS	1	37,228

c00226_3300007.. (original name was: 3300007120.a:Ga0102643_101902)

Region	Type	From	To	Most similar known cluster		Similarity
Region 226.1	LAP	1	7,932

Region	Type	From	To	Similarity
Region 13.1	bacteriocin	1	5,453
Region 89.1	NRPS	1	11,960
Region 110.1	NRPS	10,823	65,639
Region 126.1	LAP	2,488	21,405
Region 202.1	lanthipeptide	1	15,529
Region 225.1	NRPS,T1PKS	1	37,228
Region 226.1	LAP	1	7,932

No secondary metabolite regions were found in these records:: c00001_3300007.. (original name was: 3300007120.a:Ga0102643_104261); c00002_3300007.. (original name was: 3300007120.a:Ga0102643_100751); c00003_3300007.. (original name was: 3300007120.a:Ga0102643_101528); c00004_3300007.. (original name was: 3300007120.a:Ga0102643_102794); c00005_3300007.. (original name was: 3300007120.a:Ga0102643_103249); c00006_3300007.. (original name was: 3300007120.a:Ga0102643_100568); c00007_3300007.. (original name was: 3300007120.a:Ga0102643_103894); c00008_3300007.. (original name was: 3300007120.a:Ga0102643_105567); c00009_3300007.. (original name was: 3300007120.a:Ga0102643_102133); c00010_3300007.. (original name was: 3300007120.a:Ga0102643_101209); c00011_3300007.. (original name was: 3300007120.a:Ga0102643_104952); c00012_3300007.. (original name was: 3300007120.a:Ga0102643_100654); c00014_3300007.. (original name was: 3300007120.a:Ga0102643_101164); c00015_3300007.. (original name was: 3300007120.a:Ga0102643_101852); c00016_3300007.. (original name was: 3300007120.a:Ga0102643_104858); c00017_3300007.. (original name was: 3300007120.a:Ga0102643_102931); c00018_3300007.. (original name was: 3300007120.a:Ga0102643_100964); c00019_3300007.. (original name was: 3300007120.a:Ga0102643_105337); c00020_3300007.. (original name was: 3300007120.a:Ga0102643_103082); c00021_3300007.. (original name was: 3300007120.a:Ga0102643_101458); c00022_3300007.. (original name was: 3300007120.a:Ga0102643_101082); c00023_3300007.. (original name was: 3300007120.a:Ga0102643_101597); c00024_3300007.. (original name was: 3300007120.a:Ga0102643_101809); c00025_3300007.. (original name was: 3300007120.a:Ga0102643_100265); c00026_3300007.. (original name was: 3300007120.a:Ga0102643_100534); c00027_3300007.. (original name was: 3300007120.a:Ga0102643_102437); c00028_3300007.. (original name was: 3300007120.a:Ga0102643_101222); c00029_3300007.. (original name was: 3300007120.a:Ga0102643_103904); c00030_3300007.. (original name was: 3300007120.a:Ga0102643_104309); c00031_3300007.. (original name was: 3300007120.a:Ga0102643_100506); c00032_3300007.. (original name was: 3300007120.a:Ga0102643_100740); c00033_3300007.. (original name was: 3300007120.a:Ga0102643_101863); c00034_3300007.. (original name was: 3300007120.a:Ga0102643_100486); c00035_3300007.. (original name was: 3300007120.a:Ga0102643_100661); c00036_3300007.. (original name was: 3300007120.a:Ga0102643_101627); c00037_3300007.. (original name was: 3300007120.a:Ga0102643_100352); c00038_3300007.. (original name was: 3300007120.a:Ga0102643_100629); c00039_3300007.. (original name was: 3300007120.a:Ga0102643_100115); c00040_3300007.. (original name was: 3300007120.a:Ga0102643_103373); c00041_3300007.. (original name was: 3300007120.a:Ga0102643_102701); c00042_3300007.. (original name was: 3300007120.a:Ga0102643_100390); c00043_3300007.. (original name was: 3300007120.a:Ga0102643_102251); c00044_3300007.. (original name was: 3300007120.a:Ga0102643_101061); c00045_3300007.. (original name was: 3300007120.a:Ga0102643_102139); c00046_3300007.. (original name was: 3300007120.a:Ga0102643_100656); c00047_3300007.. (original name was: 3300007120.a:Ga0102643_101553); c00048_3300007.. (original name was: 3300007120.a:Ga0102643_101942); c00049_3300007.. (original name was: 3300007120.a:Ga0102643_100194); c00050_3300007.. (original name was: 3300007120.a:Ga0102643_101919); c00051_3300007.. (original name was: 3300007120.a:Ga0102643_101718); c00052_3300007.. (original name was: 3300007120.a:Ga0102643_100515); c00053_3300007.. (original name was: 3300007120.a:Ga0102643_102930); c00054_3300007.. (original name was: 3300007120.a:Ga0102643_100346); c00055_3300007.. (original name was: 3300007120.a:Ga0102643_100336); c00056_3300007.. (original name was: 3300007120.a:Ga0102643_101355); c00057_3300007.. (original name was: 3300007120.a:Ga0102643_104672); c00058_3300007.. (original name was: 3300007120.a:Ga0102643_100886); c00059_3300007.. (original name was: 3300007120.a:Ga0102643_103525); c00060_3300007.. (original name was: 3300007120.a:Ga0102643_100982); c00061_3300007.. (original name was: 3300007120.a:Ga0102643_104067); c00062_3300007.. (original name was: 3300007120.a:Ga0102643_102541); c00063_3300007.. (original name was: 3300007120.a:Ga0102643_101940); c00064_3300007.. (original name was: 3300007120.a:Ga0102643_102778); c00065_3300007.. (original name was: 3300007120.a:Ga0102643_101258); c00066_3300007.. (original name was: 3300007120.a:Ga0102643_102718); c00067_3300007.. (original name was: 3300007120.a:Ga0102643_102807); c00068_3300007.. (original name was: 3300007120.a:Ga0102643_100408); c00069_3300007.. (original name was: 3300007120.a:Ga0102643_101201); c00070_3300007.. (original name was: 3300007120.a:Ga0102643_100285); c00071_3300007.. (original name was: 3300007120.a:Ga0102643_103176); c00072_3300007.. (original name was: 3300007120.a:Ga0102643_101706); c00073_3300007.. (original name was: 3300007120.a:Ga0102643_102913); c00074_3300007.. (original name was: 3300007120.a:Ga0102643_100589); c00075_3300007.. (original name was: 3300007120.a:Ga0102643_103570); c00076_3300007.. (original name was: 3300007120.a:Ga0102643_102537); c00077_3300007.. (original name was: 3300007120.a:Ga0102643_101592); c00078_3300007.. (original name was: 3300007120.a:Ga0102643_100160); c00079_3300007.. (original name was: 3300007120.a:Ga0102643_100689); c00080_3300007.. (original name was: 3300007120.a:Ga0102643_102388); c00081_3300007.. (original name was: 3300007120.a:Ga0102643_100348); c00082_3300007.. (original name was: 3300007120.a:Ga0102643_102107); c00083_3300007.. (original name was: 3300007120.a:Ga0102643_101200); c00084_3300007.. (original name was: 3300007120.a:Ga0102643_100161); c00085_3300007.. (original name was: 3300007120.a:Ga0102643_100908); c00086_3300007.. (original name was: 3300007120.a:Ga0102643_100234); c00087_3300007.. (original name was: 3300007120.a:Ga0102643_101518); c00088_3300007.. (original name was: 3300007120.a:Ga0102643_103454); c00090_3300007.. (original name was: 3300007120.a:Ga0102643_100748); c00091_3300007.. (original name was: 3300007120.a:Ga0102643_100402); c00092_3300007.. (original name was: 3300007120.a:Ga0102643_102837); c00093_3300007.. (original name was: 3300007120.a:Ga0102643_102018); c00094_3300007.. (original name was: 3300007120.a:Ga0102643_100288); c00095_3300007.. (original name was: 3300007120.a:Ga0102643_102113); c00096_3300007.. (original name was: 3300007120.a:Ga0102643_102344); c00097_3300007.. (original name was: 3300007120.a:Ga0102643_100763); c00098_3300007.. (original name was: 3300007120.a:Ga0102643_101638); c00099_3300007.. (original name was: 3300007120.a:Ga0102643_102745); c00100_3300007.. (original name was: 3300007120.a:Ga0102643_104696); c00101_3300007.. (original name was: 3300007120.a:Ga0102643_104734); c00102_3300007.. (original name was: 3300007120.a:Ga0102643_100627); c00103_3300007.. (original name was: 3300007120.a:Ga0102643_101167); c00104_3300007.. (original name was: 3300007120.a:Ga0102643_102413); c00105_3300007.. (original name was: 3300007120.a:Ga0102643_100130); c00106_3300007.. (original name was: 3300007120.a:Ga0102643_104011); c00107_3300007.. (original name was: 3300007120.a:Ga0102643_103425); c00108_3300007.. (original name was: 3300007120.a:Ga0102643_100416); c00109_3300007.. (original name was: 3300007120.a:Ga0102643_100990); c00111_3300007.. (original name was: 3300007120.a:Ga0102643_100617); c00112_3300007.. (original name was: 3300007120.a:Ga0102643_103361); c00113_3300007.. (original name was: 3300007120.a:Ga0102643_104033); c00114_3300007.. (original name was: 3300007120.a:Ga0102643_102091); c00115_3300007.. (original name was: 3300007120.a:Ga0102643_100293); c00116_3300007.. (original name was: 3300007120.a:Ga0102643_102016); c00117_3300007.. (original name was: 3300007120.a:Ga0102643_102324); c00118_3300007.. (original name was: 3300007120.a:Ga0102643_102006); c00119_3300007.. (original name was: 3300007120.a:Ga0102643_102573); c00120_3300007.. (original name was: 3300007120.a:Ga0102643_105173); c00121_3300007.. (original name was: 3300007120.a:Ga0102643_100439); c00122_3300007.. (original name was: 3300007120.a:Ga0102643_101293); c00123_3300007.. (original name was: 3300007120.a:Ga0102643_102261); c00124_3300007.. (original name was: 3300007120.a:Ga0102643_104563); c00125_3300007.. (original name was: 3300007120.a:Ga0102643_101780); c00127_3300007.. (original name was: 3300007120.a:Ga0102643_101583); c00128_3300007.. (original name was: 3300007120.a:Ga0102643_104158); c00129_3300007.. (original name was: 3300007120.a:Ga0102643_103718); c00130_3300007.. (original name was: 3300007120.a:Ga0102643_101522); c00131_3300007.. (original name was: 3300007120.a:Ga0102643_100652); c00132_3300007.. (original name was: 3300007120.a:Ga0102643_103524); c00133_3300007.. (original name was: 3300007120.a:Ga0102643_100250); c00134_3300007.. (original name was: 3300007120.a:Ga0102643_101223); c00135_3300007.. (original name was: 3300007120.a:Ga0102643_101914); c00136_3300007.. (original name was: 3300007120.a:Ga0102643_101177); c00137_3300007.. (original name was: 3300007120.a:Ga0102643_103884); c00138_3300007.. (original name was: 3300007120.a:Ga0102643_100744); c00139_3300007.. (original name was: 3300007120.a:Ga0102643_101684); c00140_3300007.. (original name was: 3300007120.a:Ga0102643_101290); c00141_3300007.. (original name was: 3300007120.a:Ga0102643_100742); c00142_3300007.. (original name was: 3300007120.a:Ga0102643_100279); c00143_3300007.. (original name was: 3300007120.a:Ga0102643_100493); c00144_3300007.. (original name was: 3300007120.a:Ga0102643_100191); c00145_3300007.. (original name was: 3300007120.a:Ga0102643_101348); c00146_3300007.. (original name was: 3300007120.a:Ga0102643_102232); c00147_3300007.. (original name was: 3300007120.a:Ga0102643_100595); c00148_3300007.. (original name was: 3300007120.a:Ga0102643_101782); c00149_3300007.. (original name was: 3300007120.a:Ga0102643_101400); c00150_3300007.. (original name was: 3300007120.a:Ga0102643_100895); c00151_3300007.. (original name was: 3300007120.a:Ga0102643_100625); c00152_3300007.. (original name was: 3300007120.a:Ga0102643_100313); c00153_3300007.. (original name was: 3300007120.a:Ga0102643_103981); c00154_3300007.. (original name was: 3300007120.a:Ga0102643_101793); c00155_3300007.. (original name was: 3300007120.a:Ga0102643_100775); c00156_3300007.. (original name was: 3300007120.a:Ga0102643_101707); c00157_3300007.. (original name was: 3300007120.a:Ga0102643_101204); c00158_3300007.. (original name was: 3300007120.a:Ga0102643_100628); c00159_3300007.. (original name was: 3300007120.a:Ga0102643_100423); c00160_3300007.. (original name was: 3300007120.a:Ga0102643_100779); c00161_3300007.. (original name was: 3300007120.a:Ga0102643_100378); c00162_3300007.. (original name was: 3300007120.a:Ga0102643_103647); c00163_3300007.. (original name was: 3300007120.a:Ga0102643_102030); c00164_3300007.. (original name was: 3300007120.a:Ga0102643_100793); c00165_3300007.. (original name was: 3300007120.a:Ga0102643_101138); c00166_3300007.. (original name was: 3300007120.a:Ga0102643_102241); c00167_3300007.. (original name was: 3300007120.a:Ga0102643_102475); c00168_3300007.. (original name was: 3300007120.a:Ga0102643_100253); c00169_3300007.. (original name was: 3300007120.a:Ga0102643_103368); c00170_3300007.. (original name was: 3300007120.a:Ga0102643_100236); c00171_3300007.. (original name was: 3300007120.a:Ga0102643_102037); c00172_3300007.. (original name was: 3300007120.a:Ga0102643_103143); c00173_3300007.. (original name was: 3300007120.a:Ga0102643_102276); c00174_3300007.. (original name was: 3300007120.a:Ga0102643_102011); c00175_3300007.. (original name was: 3300007120.a:Ga0102643_104291); c00176_3300007.. (original name was: 3300007120.a:Ga0102643_101151); c00177_3300007.. (original name was: 3300007120.a:Ga0102643_103473); c00178_3300007.. (original name was: 3300007120.a:Ga0102643_100323); c00179_3300007.. (original name was: 3300007120.a:Ga0102643_101581); c00180_3300007.. (original name was: 3300007120.a:Ga0102643_101010); c00181_3300007.. (original name was: 3300007120.a:Ga0102643_101640); c00182_3300007.. (original name was: 3300007120.a:Ga0102643_101864); c00183_3300007.. (original name was: 3300007120.a:Ga0102643_100480); c00184_3300007.. (original name was: 3300007120.a:Ga0102643_103248); c00185_3300007.. (original name was: 3300007120.a:Ga0102643_102246); c00186_3300007.. (original name was: 3300007120.a:Ga0102643_100340); c00187_3300007.. (original name was: 3300007120.a:Ga0102643_101708); c00188_3300007.. (original name was: 3300007120.a:Ga0102643_100894); c00189_3300007.. (original name was: 3300007120.a:Ga0102643_104919); c00190_3300007.. (original name was: 3300007120.a:Ga0102643_105035); c00191_3300007.. (original name was: 3300007120.a:Ga0102643_105474); c00192_3300007.. (original name was: 3300007120.a:Ga0102643_100401); c00193_3300007.. (original name was: 3300007120.a:Ga0102643_102841); c00194_3300007.. (original name was: 3300007120.a:Ga0102643_101509); c00195_3300007.. (original name was: 3300007120.a:Ga0102643_103528); c00196_3300007.. (original name was: 3300007120.a:Ga0102643_102074); c00197_3300007.. (original name was: 3300007120.a:Ga0102643_100525); c00198_3300007.. (original name was: 3300007120.a:Ga0102643_100384); c00199_3300007.. (original name was: 3300007120.a:Ga0102643_103223); c00200_3300007.. (original name was: 3300007120.a:Ga0102643_100913); c00201_3300007.. (original name was: 3300007120.a:Ga0102643_101663); c00203_3300007.. (original name was: 3300007120.a:Ga0102643_101587); c00204_3300007.. (original name was: 3300007120.a:Ga0102643_101545); c00205_3300007.. (original name was: 3300007120.a:Ga0102643_101495); c00206_3300007.. (original name was: 3300007120.a:Ga0102643_100633); c00207_3300007.. (original name was: 3300007120.a:Ga0102643_100078); c00208_3300007.. (original name was: 3300007120.a:Ga0102643_101538); c00209_3300007.. (original name was: 3300007120.a:Ga0102643_101062); c00210_3300007.. (original name was: 3300007120.a:Ga0102643_100664); c00211_3300007.. (original name was: 3300007120.a:Ga0102643_100749); c00212_3300007.. (original name was: 3300007120.a:Ga0102643_100294); c00213_3300007.. (original name was: 3300007120.a:Ga0102643_101721); c00214_3300007.. (original name was: 3300007120.a:Ga0102643_100330); c00215_3300007.. (original name was: 3300007120.a:Ga0102643_100971); c00216_3300007.. (original name was: 3300007120.a:Ga0102643_100441); c00217_3300007.. (original name was: 3300007120.a:Ga0102643_101513); c00218_3300007.. (original name was: 3300007120.a:Ga0102643_104770); c00219_3300007.. (original name was: 3300007120.a:Ga0102643_104785); c00220_3300007.. (original name was: 3300007120.a:Ga0102643_100454); c00221_3300007.. (original name was: 3300007120.a:Ga0102643_101526); c00222_3300007.. (original name was: 3300007120.a:Ga0102643_100810); c00223_3300007.. (original name was: 3300007120.a:Ga0102643_100203); c00224_3300007.. (original name was: 3300007120.a:Ga0102643_101338)

Compact view

c00013_3300007.. - Region 1 - bacteriocin

Download region GenBank file

Location: 1 - 5,453 nt. (total: 5,453 nt) Show pHMM detection rules used

Region on contig edge.

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00089_3300007.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 11,960 nt. (total: 11,960 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 11960:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg89_1

Search NORINE for peptide: strict or relaxed

AMP-binding (502..897): X

NRPSPredictor2: phe, trp, phg, tyr, bht

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAllmGLIDK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 70% (weak)

ctg89_2

Search NORINE for peptide: strict or relaxed

AMP-binding (522..908): X

NRPSPredictor2: asp, asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: asp, asn
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DfpKVsngaK
Nearest Stachelhaus code:: bht
Stachelhaus code match:: 40% (weak)

c00110_3300007.. - Region 1 - NRPS

Download region GenBank file

Location: 10,823 - 65,639 nt. (total: 54,817 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 10822 - 65639:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg110_33

Search NORINE for peptide: strict or relaxed

AMP-binding (450..838): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSmIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)

ctg110_39

Search NORINE for peptide: strict or relaxed

AMP-binding (537..932): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNiSMIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 90% (moderate)

c00126_3300007.. - Region 1 - LAP

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Location: 2,488 - 21,405 nt. (total: 18,918 nt) Show pHMM detection rules used

Region on contig edge.

LAP: ((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882))

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c00202_3300007.. - Region 1 - lanthipeptide

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Location: 1 - 15,529 nt. (total: 15,529 nt) Show pHMM detection rules used

Region on contig edge.

lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))

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Lanthipeptides

Lanthipeptide predictions

Lanthipeptide(s) for ctg202_5 - Putative Class II

ctg202_3 leader / core peptide: MKKSIIVATAMLAMNPLGYQAPQETTHNPDNSIAM - DhaDhbAKNEDhaQRILCDhbLFPCRWRWW
ctg202_4 leader / core peptide: MTNDRKKDLFSADIPLASELSESGINQTAGGKSVAYS - NRCDhbAGWVCDhbADhbKECQRICHWW
allorf_08454_08630 leader / core peptide: VAGIAGLRPTRPRGVGLLTARPGSRSLVRSTTRADSAACRRHGGRSLPGS - LDhbDhbAAGEC

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Lanthipeptides

Core peptide predictions

ctg202_3 - Class II

Cleavage pHMM score: -5.60

RODEO score: 0

Monoisotopic mass: 2708.4 Da

Molecular weight: 2710.1 Da

Number of bridges: 2

Alternative weights: (assuming N unmodified Ser/Thr residues); 2728.1 Da N = 1; 2746.2 Da N = 2

ctg202_4 - Class II

Cleavage pHMM score: -4.30

RODEO score: 0

Monoisotopic mass: 2597.2 Da

Molecular weight: 2599.0 Da

Number of bridges: 3

allorf_08454_08630 - Class II

Cleavage pHMM score: -4.40

RODEO score: 0

Monoisotopic mass: 728.3 Da

Molecular weight: 728.8 Da

Number of bridges: 1

Alternative weights: (assuming N unmodified Ser/Thr residues); 746.8 Da N = 1

c00225_3300007.. - Region 1 - NRPS,T1PKS

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Location: 1 - 37,228 nt. (total: 37,228 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 37228:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - mal - X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg225_5

Search NORINE for peptide: strict or relaxed

AMP-binding (461..862): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DItnfGVmWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 60% (weak)

PKS_AT (1568..1856): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 118.8
inactive: 61.2
Methoxymalonyl-CoA: 37.5
Methylmalonyl-CoA: 33.6
Propionyl-CoA: 32.0
Isobutyryl-CoA: 15.4
CHC-CoA: 10.1
2-Methylbutyryl-CoA: 9.2
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Ethylmalonyl-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 83.3%; inactive: 75.0%; 2-Rhyd-Malonyl-CoA: 62.5%

AMP-binding (2466..2856): X

NRPSPredictor2: phe, trp, phg, tyr, bht

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiFqvGMVtK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 60% (weak)

AMP-binding (4316..4699): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DpFLfGLivK
Nearest Stachelhaus code:: phg
Stachelhaus code match:: 60% (weak)

c00226_3300007.. - Region 1 - LAP

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Location: 1 - 7,932 nt. (total: 7,932 nt) Show pHMM detection rules used

Region on contig edge.

LAP: ((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882))

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core biosynthetic genes

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TTA codons

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Gene details

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