Select genomic region:
Overview
13.1
89.1
110.1
126.1
202.1
225.1
226.1

### Identified secondary metabolite regions using strictness 'relaxed'

c00013_3300007.. (original name was: 3300007120.a:Ga0102643_102909)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 13.1 | bacteriocin | 1 | 5,453 |

c00089_3300007.. (original name was: 3300007120.a:Ga0102643_101143)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 89.1 | NRPS | 1 | 11,960 |

c00110_3300007.. (original name was: 3300007120.a:Ga0102643_100059)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 110.1 | NRPS | 10,823 | 65,639 |

c00126_3300007.. (original name was: 3300007120.a:Ga0102643_100450)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 126.1 | LAP | 2,488 | 21,405 |

c00202_3300007.. (original name was: 3300007120.a:Ga0102643_100768)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 202.1 | lanthipeptide | 1 | 15,529 |

c00225_3300007.. (original name was: 3300007120.a:Ga0102643_100177)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 225.1 | NRPS,T1PKS | 1 | 37,228 |

c00226_3300007.. (original name was: 3300007120.a:Ga0102643_101902)

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 226.1 | LAP | 1 | 7,932 |

Region | Type | From | To | Most similar known cluster | Similarity
--- | --- | --- | --- | --- | ---
Region 13.1 | bacteriocin | 1 | 5,453 |
Region 89.1 | NRPS | 1 | 11,960 |
Region 110.1 | NRPS | 10,823 | 65,639 |
Region 126.1 | LAP | 2,488 | 21,405 |
Region 202.1 | lanthipeptide | 1 | 15,529 |
Region 225.1 | NRPS,T1PKS | 1 | 37,228 |
Region 226.1 | LAP | 1 | 7,932 |

No secondary metabolite regions were found in these records:
  c00001_3300007.. (original name was: 3300007120.a:Ga0102643_104261)
  c00002_3300007.. (original name was: 3300007120.a:Ga0102643_100751)
  c00003_3300007.. (original name was: 3300007120.a:Ga0102643_101528)
  c00004_3300007.. (original name was: 3300007120.a:Ga0102643_102794)
  c00005_3300007.. (original name was: 3300007120.a:Ga0102643_103249)
  c00006_3300007.. (original name was: 3300007120.a:Ga0102643_100568)
  c00007_3300007.. (original name was: 3300007120.a:Ga0102643_103894)
  c00008_3300007.. (original name was: 3300007120.a:Ga0102643_105567)
  c00009_3300007.. (original name was: 3300007120.a:Ga0102643_102133)
  c00010_3300007.. (original name was: 3300007120.a:Ga0102643_101209)
  c00011_3300007.. (original name was: 3300007120.a:Ga0102643_104952)
  c00012_3300007.. (original name was: 3300007120.a:Ga0102643_100654)
  c00014_3300007.. (original name was: 3300007120.a:Ga0102643_101164)
  c00015_3300007.. (original name was: 3300007120.a:Ga0102643_101852)
  c00016_3300007.. (original name was: 3300007120.a:Ga0102643_104858)
  c00017_3300007.. (original name was: 3300007120.a:Ga0102643_102931)
  c00018_3300007.. (original name was: 3300007120.a:Ga0102643_100964)
  c00019_3300007.. (original name was: 3300007120.a:Ga0102643_105337)
  c00020_3300007.. (original name was: 3300007120.a:Ga0102643_103082)
  c00021_3300007.. (original name was: 3300007120.a:Ga0102643_101458)
  c00022_3300007.. (original name was: 3300007120.a:Ga0102643_101082)
  c00023_3300007.. (original name was: 3300007120.a:Ga0102643_101597)
  c00024_3300007.. (original name was: 3300007120.a:Ga0102643_101809)
  c00025_3300007.. (original name was: 3300007120.a:Ga0102643_100265)
  c00026_3300007.. (original name was: 3300007120.a:Ga0102643_100534)
  c00027_3300007.. (original name was: 3300007120.a:Ga0102643_102437)
  c00028_3300007.. (original name was: 3300007120.a:Ga0102643_101222)
  c00029_3300007.. (original name was: 3300007120.a:Ga0102643_103904)
  c00030_3300007.. (original name was: 3300007120.a:Ga0102643_104309)
  c00031_3300007.. (original name was: 3300007120.a:Ga0102643_100506)
  c00032_3300007.. (original name was: 3300007120.a:Ga0102643_100740)
  c00033_3300007.. (original name was: 3300007120.a:Ga0102643_101863)
  c00034_3300007.. (original name was: 3300007120.a:Ga0102643_100486)
  c00035_3300007.. (original name was: 3300007120.a:Ga0102643_100661)
  c00036_3300007.. (original name was: 3300007120.a:Ga0102643_101627)
  c00037_3300007.. (original name was: 3300007120.a:Ga0102643_100352)
  c00038_3300007.. (original name was: 3300007120.a:Ga0102643_100629)
  c00039_3300007.. (original name was: 3300007120.a:Ga0102643_100115)
  c00040_3300007.. (original name was: 3300007120.a:Ga0102643_103373)
  c00041_3300007.. (original name was: 3300007120.a:Ga0102643_102701)
  c00042_3300007.. (original name was: 3300007120.a:Ga0102643_100390)
  c00043_3300007.. (original name was: 3300007120.a:Ga0102643_102251)
  c00044_3300007.. (original name was: 3300007120.a:Ga0102643_101061)
  c00045_3300007.. (original name was: 3300007120.a:Ga0102643_102139)
  c00046_3300007.. (original name was: 3300007120.a:Ga0102643_100656)
  c00047_3300007.. (original name was: 3300007120.a:Ga0102643_101553)
  c00048_3300007.. (original name was: 3300007120.a:Ga0102643_101942)
  c00049_3300007.. (original name was: 3300007120.a:Ga0102643_100194)
  c00050_3300007.. (original name was: 3300007120.a:Ga0102643_101919)
  c00051_3300007.. (original name was: 3300007120.a:Ga0102643_101718)
  c00052_3300007.. (original name was: 3300007120.a:Ga0102643_100515)
  c00053_3300007.. (original name was: 3300007120.a:Ga0102643_102930)
  c00054_3300007.. (original name was: 3300007120.a:Ga0102643_100346)
  c00055_3300007.. (original name was: 3300007120.a:Ga0102643_100336)
  c00056_3300007.. (original name was: 3300007120.a:Ga0102643_101355)
  c00057_3300007.. (original name was: 3300007120.a:Ga0102643_104672)
  c00058_3300007.. (original name was: 3300007120.a:Ga0102643_100886)
  c00059_3300007.. (original name was: 3300007120.a:Ga0102643_103525)
  c00060_3300007.. (original name was: 3300007120.a:Ga0102643_100982)
  c00061_3300007.. (original name was: 3300007120.a:Ga0102643_104067)
  c00062_3300007.. (original name was: 3300007120.a:Ga0102643_102541)
  c00063_3300007.. (original name was: 3300007120.a:Ga0102643_101940)
  c00064_3300007.. (original name was: 3300007120.a:Ga0102643_102778)
  c00065_3300007.. (original name was: 3300007120.a:Ga0102643_101258)
  c00066_3300007.. (original name was: 3300007120.a:Ga0102643_102718)
  c00067_3300007.. (original name was: 3300007120.a:Ga0102643_102807)
  c00068_3300007.. (original name was: 3300007120.a:Ga0102643_100408)
  c00069_3300007.. (original name was: 3300007120.a:Ga0102643_101201)
  c00070_3300007.. (original name was: 3300007120.a:Ga0102643_100285)
  c00071_3300007.. (original name was: 3300007120.a:Ga0102643_103176)
  c00072_3300007.. (original name was: 3300007120.a:Ga0102643_101706)
  c00073_3300007.. (original name was: 3300007120.a:Ga0102643_102913)
  c00074_3300007.. (original name was: 3300007120.a:Ga0102643_100589)
  c00075_3300007.. (original name was: 3300007120.a:Ga0102643_103570)
  c00076_3300007.. (original name was: 3300007120.a:Ga0102643_102537)
  c00077_3300007.. (original name was: 3300007120.a:Ga0102643_101592)
  c00078_3300007.. (original name was: 3300007120.a:Ga0102643_100160)
  c00079_3300007.. (original name was: 3300007120.a:Ga0102643_100689)
  c00080_3300007.. (original name was: 3300007120.a:Ga0102643_102388)
  c00081_3300007.. (original name was: 3300007120.a:Ga0102643_100348)
  c00082_3300007.. (original name was: 3300007120.a:Ga0102643_102107)
  c00083_3300007.. (original name was: 3300007120.a:Ga0102643_101200)
  c00084_3300007.. (original name was: 3300007120.a:Ga0102643_100161)
  c00085_3300007.. (original name was: 3300007120.a:Ga0102643_100908)
  c00086_3300007.. (original name was: 3300007120.a:Ga0102643_100234)
  c00087_3300007.. (original name was: 3300007120.a:Ga0102643_101518)
  c00088_3300007.. (original name was: 3300007120.a:Ga0102643_103454)
  c00090_3300007.. (original name was: 3300007120.a:Ga0102643_100748)
  c00091_3300007.. (original name was: 3300007120.a:Ga0102643_100402)
  c00092_3300007.. (original name was: 3300007120.a:Ga0102643_102837)
  c00093_3300007.. (original name was: 3300007120.a:Ga0102643_102018)
  c00094_3300007.. (original name was: 3300007120.a:Ga0102643_100288)
  c00095_3300007.. (original name was: 3300007120.a:Ga0102643_102113)
  c00096_3300007.. (original name was: 3300007120.a:Ga0102643_102344)
  c00097_3300007.. (original name was: 3300007120.a:Ga0102643_100763)
  c00098_3300007.. (original name was: 3300007120.a:Ga0102643_101638)
  c00099_3300007.. (original name was: 3300007120.a:Ga0102643_102745)
  c00100_3300007.. (original name was: 3300007120.a:Ga0102643_104696)
  c00101_3300007.. (original name was: 3300007120.a:Ga0102643_104734)
  c00102_3300007.. (original name was: 3300007120.a:Ga0102643_100627)
  c00103_3300007.. (original name was: 3300007120.a:Ga0102643_101167)
  c00104_3300007.. (original name was: 3300007120.a:Ga0102643_102413)
  c00105_3300007.. (original name was: 3300007120.a:Ga0102643_100130)
  c00106_3300007.. (original name was: 3300007120.a:Ga0102643_104011)
  c00107_3300007.. (original name was: 3300007120.a:Ga0102643_103425)
  c00108_3300007.. (original name was: 3300007120.a:Ga0102643_100416)
  c00109_3300007.. (original name was: 3300007120.a:Ga0102643_100990)
  c00111_3300007.. (original name was: 3300007120.a:Ga0102643_100617)
  c00112_3300007.. (original name was: 3300007120.a:Ga0102643_103361)
  c00113_3300007.. (original name was: 3300007120.a:Ga0102643_104033)
  c00114_3300007.. (original name was: 3300007120.a:Ga0102643_102091)
  c00115_3300007.. (original name was: 3300007120.a:Ga0102643_100293)
  c00116_3300007.. (original name was: 3300007120.a:Ga0102643_102016)
  c00117_3300007.. (original name was: 3300007120.a:Ga0102643_102324)
  c00118_3300007.. (original name was: 3300007120.a:Ga0102643_102006)
  c00119_3300007.. (original name was: 3300007120.a:Ga0102643_102573)
  c00120_3300007.. (original name was: 3300007120.a:Ga0102643_105173)
  c00121_3300007.. (original name was: 3300007120.a:Ga0102643_100439)
  c00122_3300007.. (original name was: 3300007120.a:Ga0102643_101293)
  c00123_3300007.. (original name was: 3300007120.a:Ga0102643_102261)
  c00124_3300007.. (original name was: 3300007120.a:Ga0102643_104563)
  c00125_3300007.. (original name was: 3300007120.a:Ga0102643_101780)
  c00127_3300007.. (original name was: 3300007120.a:Ga0102643_101583)
  c00128_3300007.. (original name was: 3300007120.a:Ga0102643_104158)
  c00129_3300007.. (original name was: 3300007120.a:Ga0102643_103718)
  c00130_3300007.. (original name was: 3300007120.a:Ga0102643_101522)
  c00131_3300007.. (original name was: 3300007120.a:Ga0102643_100652)
  c00132_3300007.. (original name was: 3300007120.a:Ga0102643_103524)
  c00133_3300007.. (original name was: 3300007120.a:Ga0102643_100250)
  c00134_3300007.. (original name was: 3300007120.a:Ga0102643_101223)
  c00135_3300007.. (original name was: 3300007120.a:Ga0102643_101914)
  c00136_3300007.. (original name was: 3300007120.a:Ga0102643_101177)
  c00137_3300007.. (original name was: 3300007120.a:Ga0102643_103884)
  c00138_3300007.. (original name was: 3300007120.a:Ga0102643_100744)
  c00139_3300007.. (original name was: 3300007120.a:Ga0102643_101684)
  c00140_3300007.. (original name was: 3300007120.a:Ga0102643_101290)
  c00141_3300007.. (original name was: 3300007120.a:Ga0102643_100742)
  c00142_3300007.. (original name was: 3300007120.a:Ga0102643_100279)
  c00143_3300007.. (original name was: 3300007120.a:Ga0102643_100493)
  c00144_3300007.. (original name was: 3300007120.a:Ga0102643_100191)
  c00145_3300007.. (original name was: 3300007120.a:Ga0102643_101348)
  c00146_3300007.. (original name was: 3300007120.a:Ga0102643_102232)
  c00147_3300007.. (original name was: 3300007120.a:Ga0102643_100595)
  c00148_3300007.. (original name was: 3300007120.a:Ga0102643_101782)
  c00149_3300007.. (original name was: 3300007120.a:Ga0102643_101400)
  c00150_3300007.. (original name was: 3300007120.a:Ga0102643_100895)
  c00151_3300007.. (original name was: 3300007120.a:Ga0102643_100625)
  c00152_3300007.. (original name was: 3300007120.a:Ga0102643_100313)
  c00153_3300007.. (original name was: 3300007120.a:Ga0102643_103981)
  c00154_3300007.. (original name was: 3300007120.a:Ga0102643_101793)
  c00155_3300007.. (original name was: 3300007120.a:Ga0102643_100775)
  c00156_3300007.. (original name was: 3300007120.a:Ga0102643_101707)
  c00157_3300007.. (original name was: 3300007120.a:Ga0102643_101204)
  c00158_3300007.. (original name was: 3300007120.a:Ga0102643_100628)
  c00159_3300007.. (original name was: 3300007120.a:Ga0102643_100423)
  c00160_3300007.. (original name was: 3300007120.a:Ga0102643_100779)
  c00161_3300007.. (original name was: 3300007120.a:Ga0102643_100378)
  c00162_3300007.. (original name was: 3300007120.a:Ga0102643_103647)
  c00163_3300007.. (original name was: 3300007120.a:Ga0102643_102030)
  c00164_3300007.. (original name was: 3300007120.a:Ga0102643_100793)
  c00165_3300007.. (original name was: 3300007120.a:Ga0102643_101138)
  c00166_3300007.. (original name was: 3300007120.a:Ga0102643_102241)
  c00167_3300007.. (original name was: 3300007120.a:Ga0102643_102475)
  c00168_3300007.. (original name was: 3300007120.a:Ga0102643_100253)
  c00169_3300007.. (original name was: 3300007120.a:Ga0102643_103368)
  c00170_3300007.. (original name was: 3300007120.a:Ga0102643_100236)
  c00171_3300007.. (original name was: 3300007120.a:Ga0102643_102037)
  c00172_3300007.. (original name was: 3300007120.a:Ga0102643_103143)
  c00173_3300007.. (original name was: 3300007120.a:Ga0102643_102276)
  c00174_3300007.. (original name was: 3300007120.a:Ga0102643_102011)
  c00175_3300007.. (original name was: 3300007120.a:Ga0102643_104291)
  c00176_3300007.. (original name was: 3300007120.a:Ga0102643_101151)
  c00177_3300007.. (original name was: 3300007120.a:Ga0102643_103473)
  c00178_3300007.. (original name was: 3300007120.a:Ga0102643_100323)
  c00179_3300007.. (original name was: 3300007120.a:Ga0102643_101581)
  c00180_3300007.. (original name was: 3300007120.a:Ga0102643_101010)
  c00181_3300007.. (original name was: 3300007120.a:Ga0102643_101640)
  c00182_3300007.. (original name was: 3300007120.a:Ga0102643_101864)
  c00183_3300007.. (original name was: 3300007120.a:Ga0102643_100480)
  c00184_3300007.. (original name was: 3300007120.a:Ga0102643_103248)
  c00185_3300007.. (original name was: 3300007120.a:Ga0102643_102246)
  c00186_3300007.. (original name was: 3300007120.a:Ga0102643_100340)
  c00187_3300007.. (original name was: 3300007120.a:Ga0102643_101708)
  c00188_3300007.. (original name was: 3300007120.a:Ga0102643_100894)
  c00189_3300007.. (original name was: 3300007120.a:Ga0102643_104919)
  c00190_3300007.. (original name was: 3300007120.a:Ga0102643_105035)
  c00191_3300007.. (original name was: 3300007120.a:Ga0102643_105474)
  c00192_3300007.. (original name was: 3300007120.a:Ga0102643_100401)
  c00193_3300007.. (original name was: 3300007120.a:Ga0102643_102841)
  c00194_3300007.. (original name was: 3300007120.a:Ga0102643_101509)
  c00195_3300007.. (original name was: 3300007120.a:Ga0102643_103528)
  c00196_3300007.. (original name was: 3300007120.a:Ga0102643_102074)
  c00197_3300007.. (original name was: 3300007120.a:Ga0102643_100525)
  c00198_3300007.. (original name was: 3300007120.a:Ga0102643_100384)
  c00199_3300007.. (original name was: 3300007120.a:Ga0102643_103223)
  c00200_3300007.. (original name was: 3300007120.a:Ga0102643_100913)
  c00201_3300007.. (original name was: 3300007120.a:Ga0102643_101663)
  c00203_3300007.. (original name was: 3300007120.a:Ga0102643_101587)
  c00204_3300007.. (original name was: 3300007120.a:Ga0102643_101545)
  c00205_3300007.. (original name was: 3300007120.a:Ga0102643_101495)
  c00206_3300007.. (original name was: 3300007120.a:Ga0102643_100633)
  c00207_3300007.. (original name was: 3300007120.a:Ga0102643_100078)
  c00208_3300007.. (original name was: 3300007120.a:Ga0102643_101538)
  c00209_3300007.. (original name was: 3300007120.a:Ga0102643_101062)
  c00210_3300007.. (original name was: 3300007120.a:Ga0102643_100664)
  c00211_3300007.. (original name was: 3300007120.a:Ga0102643_100749)
  c00212_3300007.. (original name was: 3300007120.a:Ga0102643_100294)
  c00213_3300007.. (original name was: 3300007120.a:Ga0102643_101721)
  c00214_3300007.. (original name was: 3300007120.a:Ga0102643_100330)
  c00215_3300007.. (original name was: 3300007120.a:Ga0102643_100971)
  c00216_3300007.. (original name was: 3300007120.a:Ga0102643_100441)
  c00217_3300007.. (original name was: 3300007120.a:Ga0102643_101513)
  c00218_3300007.. (original name was: 3300007120.a:Ga0102643_104770)
  c00219_3300007.. (original name was: 3300007120.a:Ga0102643_104785)
  c00220_3300007.. (original name was: 3300007120.a:Ga0102643_100454)
  c00221_3300007.. (original name was: 3300007120.a:Ga0102643_101526)
  c00222_3300007.. (original name was: 3300007120.a:Ga0102643_100810)
  c00223_3300007.. (original name was: 3300007120.a:Ga0102643_100203)
  c00224_3300007.. (original name was: 3300007120.a:Ga0102643_101338)

Compact view
c00013_3300007.. - Region 1 - bacteriocin
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Location: 1 - 5,453 nt. (total: 5,453 nt) Show pHMM detection rules used
Region on contig edge.
bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
c00089_3300007.. - Region 1 - NRPS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Location: 1 - 11,960 nt. (total: 11,960 nt) Show pHMM detection rules used
Region on contig edge.
NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
NRPS/PKS products
NRPS/PKS monomers
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 1, location 0 - 11960:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:
  (X) + (X)

Direct lookup in NORINE database: strict or relaxed
Link to NORINE database query form
NRPS/PKS monomer predictions
Shows the predicted monomers for each adynelation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).

ctg89_1: X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (502..897): X
  NRPSPredictor2: phe, trp, phg, tyr, bht
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aromatic
    Large clusters prediction:
      phe, trp, phg, tyr, bht
    Small clusters prediction:
      N/A
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DAllmGLIDK
    Nearest Stachelhaus code:
      gln
    Stachelhaus code match:
      70% (weak)
ctg89_2: X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (522..908): X
  NRPSPredictor2: asp, asn
  SVM prediction details:
    Predicted physicochemical class:
      hydrophilic
    Large clusters prediction:
      gly, ala, val, leu, ile, abu, iva
    Small clusters prediction:
      asp, asn
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DfpKVsngaK
    Nearest Stachelhaus code:
      bht
    Stachelhaus code match:
      40% (weak)

c00110_3300007.. - Region 1 - NRPS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Location: 10,823 - 65,639 nt. (total: 54,817 nt) Show pHMM detection rules used
NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
NRPS/PKS products
NRPS/PKS monomers
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 1, location 10822 - 65639:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:
  (cys)

Direct lookup in NORINE database: strict or relaxed
Link to NORINE database query form
NRPS/PKS monomer predictions
Shows the predicted monomers for each adynelation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).

ctg110_33: cys
  Search NORINE for peptide: strict or relaxed
  AMP-binding (450..838): cys
  NRPSPredictor2: cys
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aliphatic
    Large clusters prediction:
      cys
    Small clusters prediction:
      cys
    Single AA prediction:
      cys
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DLYNLSmIWK
    Nearest Stachelhaus code:
      cys
    Stachelhaus code match:
      90% (moderate)
ctg110_39: cys
  Search NORINE for peptide: strict or relaxed
  AMP-binding (537..932): cys
  NRPSPredictor2: cys
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aliphatic
    Large clusters prediction:
      cys
    Small clusters prediction:
      cys
    Single AA prediction:
      cys
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DLYNiSMIWK
    Nearest Stachelhaus code:
      cys
    Stachelhaus code match:
      90% (moderate)

c00126_3300007.. - Region 1 - LAP
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Location: 2,488 - 21,405 nt. (total: 18,918 nt) Show pHMM detection rules used
Region on contig edge.
LAP: ((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
c00202_3300007.. - Region 1 - lanthipeptide
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Location: 1 - 15,529 nt. (total: 15,529 nt) Show pHMM detection rules used
Region on contig edge.
lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
Lanthipeptides
Lanthipeptide predictions
Lists the possible core peptides for each biosynthetic enzyme, including the predicted class. Each core peptide shows the leader and core peptide sequences, separated by a dash.

#### Lanthipeptide(s) for ctg202_5 - Putative Class II

ctg202_3 leader / core peptide
  MKKSIIVATAMLAMNPLGYQAPQETTHNPDNSIAM - Dha DhbAKNEDhaQRILC DhbLFPCRWRWW
ctg202_4 leader / core peptide
  MTNDRKKDLFSADIPLASELSESGINQTAGGKSVAYS - NRC DhbAGWVC DhbADhbKECQRICHWW
allorf_08454_08630 leader / core peptide
  VAGIAGLRPTRPRGVGLLTARPGSRSLVRSTTRADSAACRRHGGRSLPGS - LDhb DhbAAGEC

#### Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine
Lanthipeptides
Core peptide predictions
Lists the possible core peptides in the region. Each core peptide lists the number of lanthionine bridges, possible molecular weights, and the scores for cleavage site prediction and RODEO.

ctg202_3 - Class II
  Cleavage pHMM score: -5.60
  RODEO score: 0
  Monoisotopic mass: 2708.4 Da
  Molecular weight: 2710.1 Da
  Number of bridges: 2
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    2728.1 Da N = 1
    2746.2 Da N = 2
ctg202_4 - Class II
  Cleavage pHMM score: -4.30
  RODEO score: 0
  Monoisotopic mass: 2597.2 Da
  Molecular weight: 2599.0 Da
  Number of bridges: 3
allorf_08454_08630 - Class II
  Cleavage pHMM score: -4.40
  RODEO score: 0
  Monoisotopic mass: 728.3 Da
  Molecular weight: 728.8 Da
  Number of bridges: 1
  Alternative weights
    (assuming N unmodified Ser/Thr residues)
    746.8 Da N = 1

c00225_3300007.. - Region 1 - NRPS,T1PKS
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Location: 1 - 37,228 nt. (total: 37,228 nt) Show pHMM detection rules used
Region on contig edge.
NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it
NRPS/PKS domains
Detailed domain annotation
Shows NRPS- and PKS-related domains for each feature that contains them. Click on each domain for more information about the domain's location, consensus monomer prediction, and other details.
A glossary is available here.
Selected features only
Show module domains
NRPS/PKS products
NRPS/PKS monomers
Predicted core structure(s)
Shows estimated product structure and polymer for each candidate cluster in the region. To show the product, click on the expander or the candidate cluster feature drawn in the overview.
For candidate cluster 1, location 0 - 37228:
Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:
  (X - mal - X - X)

Direct lookup in NORINE database: strict or relaxed
Link to NORINE database query form
NRPS/PKS monomer predictions
Shows the predicted monomers for each adynelation domain and acyltransferase within genes. Each gene prediction can be expanded to view detailed predictions of each domain. Each prediction can be expanded to view the predictions by tool (and, for some tools, further expanded for extra details).

ctg225_5: X - mal - X - X
  Search NORINE for peptide: strict or relaxed
  AMP-binding (461..862): X
  NRPSPredictor2: hydrophobic-aliphatic
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aliphatic
    Large clusters prediction:
      N/A
    Small clusters prediction:
      N/A
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DItnfGVmWK
    Nearest Stachelhaus code:
      gly
    Stachelhaus code match:
      60% (weak)
  PKS_AT (1568..1856): mal
  minowa: Malonyl-CoA
  Prediction, score:
    Malonyl-CoA: 118.8
    inactive: 61.2
    Methoxymalonyl-CoA: 37.5
    Methylmalonyl-CoA: 33.6
    Propionyl-CoA: 32.0
    Isobutyryl-CoA: 15.4
    CHC-CoA: 10.1
    2-Methylbutyryl-CoA: 9.2
    trans-1,2-CPDA: 0.0
    fatty_acid: 0.0
    Ethylmalonyl-CoA: 0.0
    Benzoyl-CoA: 0.0
    Acetyl-CoA: 0.0
    3-Methylbutyryl-CoA: 0.0
  ATSignature: Malonyl-CoA
  Top 3 matches:
    Malonyl-CoA: 83.3%
    inactive: 75.0%
    2-Rhyd-Malonyl-CoA: 62.5%
  AMP-binding (2466..2856): X
  NRPSPredictor2: phe, trp, phg, tyr, bht
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aromatic
    Large clusters prediction:
      phe, trp, phg, tyr, bht
    Small clusters prediction:
      N/A
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DiFqvGMVtK
    Nearest Stachelhaus code:
      leu
    Stachelhaus code match:
      60% (weak)
  AMP-binding (4316..4699): X
  NRPSPredictor2: val, leu, ile, abu, iva
  SVM prediction details:
    Predicted physicochemical class:
      hydrophobic-aliphatic
    Large clusters prediction:
      gly, ala, val, leu, ile, abu, iva
    Small clusters prediction:
      val, leu, ile, abu, iva
    Single AA prediction:
      N/A
  Stachelhaus prediction details:
    Stachelhaus sequence:
      DpFLfGLivK
    Nearest Stachelhaus code:
      phg
    Stachelhaus code match:
      60% (weak)

c00226_3300007.. - Region 1 - LAP
Shows the layout of the region, marking coding sequences and areas of interest. Clicking a gene will select it and show any relevant details. Clicking an area feature (e.g. a candidate cluster) will select all coding sequences within that area. Double clicking an area feature will zoom to that area. Multiple genes and area features can be selected by clicking them while holding the Ctrl key.
More detailed help is available here.
Download region GenBank file
Location: 1 - 7,932 nt. (total: 7,932 nt) Show pHMM detection rules used
Region on contig edge.
LAP: ((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882))

#### Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
other genes
resistance
TTA codons
reset view
zoom to selection
Gene details
Shows details of the most recently selected gene, including names, products, location, and other annotations.
Select a gene to view the details available for it