3300008096_10 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00019_3300008.. (original name was: 3300008096.a:Ga0114155_1000554)

Region	Type	From	To	Most similar known cluster		Similarity
Region 19.1	NRPS-like	26,071	48,666

c00041_3300008.. (original name was: 3300008096.a:Ga0114155_1003704)

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	NRPS	1	11,041

c00046_3300008.. (original name was: 3300008096.a:Ga0114155_1000203)

Region	Type	From	To	Most similar known cluster		Similarity
Region 46.1	sactipeptide	1	10,334

c00047_3300008.. (original name was: 3300008096.a:Ga0114155_1000036)

Region	Type	From	To	Most similar known cluster		Similarity
Region 47.1	NRPS	130,379	162,056

Region	Type	From	To	Similarity
Region 19.1	NRPS-like	26,071	48,666
Region 41.1	NRPS	1	11,041
Region 46.1	sactipeptide	1	10,334
Region 47.1	NRPS	130,379	162,056

No secondary metabolite regions were found in these records:: c00001_3300008.. (original name was: 3300008096.a:Ga0114155_1000211); c00002_3300008.. (original name was: 3300008096.a:Ga0114155_1004139); c00003_3300008.. (original name was: 3300008096.a:Ga0114155_1004821); c00004_3300008.. (original name was: 3300008096.a:Ga0114155_1002644); c00005_3300008.. (original name was: 3300008096.a:Ga0114155_1001073); c00006_3300008.. (original name was: 3300008096.a:Ga0114155_1000050); c00007_3300008.. (original name was: 3300008096.a:Ga0114155_1001805); c00008_3300008.. (original name was: 3300008096.a:Ga0114155_1002101); c00009_3300008.. (original name was: 3300008096.a:Ga0114155_1000499); c00010_3300008.. (original name was: 3300008096.a:Ga0114155_1000074); c00011_3300008.. (original name was: 3300008096.a:Ga0114155_1000666); c00012_3300008.. (original name was: 3300008096.a:Ga0114155_1005169); c00013_3300008.. (original name was: 3300008096.a:Ga0114155_1002758); c00014_3300008.. (original name was: 3300008096.a:Ga0114155_1000292); c00015_3300008.. (original name was: 3300008096.a:Ga0114155_1000123); c00016_3300008.. (original name was: 3300008096.a:Ga0114155_1008834); c00017_3300008.. (original name was: 3300008096.a:Ga0114155_1002291); c00018_3300008.. (original name was: 3300008096.a:Ga0114155_1000020); c00020_3300008.. (original name was: 3300008096.a:Ga0114155_1001568); c00021_3300008.. (original name was: 3300008096.a:Ga0114155_1002382); c00022_3300008.. (original name was: 3300008096.a:Ga0114155_1011338); c00023_3300008.. (original name was: 3300008096.a:Ga0114155_1001396); c00024_3300008.. (original name was: 3300008096.a:Ga0114155_1002598); c00025_3300008.. (original name was: 3300008096.a:Ga0114155_1000620); c00026_3300008.. (original name was: 3300008096.a:Ga0114155_1000672); c00027_3300008.. (original name was: 3300008096.a:Ga0114155_1002839); c00028_3300008.. (original name was: 3300008096.a:Ga0114155_1001922); c00029_3300008.. (original name was: 3300008096.a:Ga0114155_1000649); c00030_3300008.. (original name was: 3300008096.a:Ga0114155_1009271); c00031_3300008.. (original name was: 3300008096.a:Ga0114155_1003274); c00032_3300008.. (original name was: 3300008096.a:Ga0114155_1000392); c00033_3300008.. (original name was: 3300008096.a:Ga0114155_1002917); c00034_3300008.. (original name was: 3300008096.a:Ga0114155_1000655); c00035_3300008.. (original name was: 3300008096.a:Ga0114155_1001333); c00036_3300008.. (original name was: 3300008096.a:Ga0114155_1000165); c00037_3300008.. (original name was: 3300008096.a:Ga0114155_1000027); c00038_3300008.. (original name was: 3300008096.a:Ga0114155_1000732); c00039_3300008.. (original name was: 3300008096.a:Ga0114155_1000224); c00040_3300008.. (original name was: 3300008096.a:Ga0114155_1000068); c00042_3300008.. (original name was: 3300008096.a:Ga0114155_1005279); c00043_3300008.. (original name was: 3300008096.a:Ga0114155_1000196); c00044_3300008.. (original name was: 3300008096.a:Ga0114155_1000503); c00045_3300008.. (original name was: 3300008096.a:Ga0114155_1000031); c00048_3300008.. (original name was: 3300008096.a:Ga0114155_1000012); c00049_3300008.. (original name was: 3300008096.a:Ga0114155_1002416); c00050_3300008.. (original name was: 3300008096.a:Ga0114155_1000371); c00051_3300008.. (original name was: 3300008096.a:Ga0114155_1001864); c00052_3300008.. (original name was: 3300008096.a:Ga0114155_1000108); c00053_3300008.. (original name was: 3300008096.a:Ga0114155_1001393)

Compact view

c00019_3300008.. - Region 1 - NRPS-like

Download region GenBank file

Location: 26,071 - 48,666 nt. (total: 22,596 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 26070 - 48666:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg19_44

Search NORINE for peptide: strict or relaxed

AMP-binding (25..288): X

NRPSPredictor2: phe, trp, phg, tyr, bht

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAiTTGgVsK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 70% (weak)

c00041_3300008.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 11,041 nt. (total: 11,041 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 11041:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg41_2

Search NORINE for peptide: strict or relaxed

AMP-binding (20..419): X

NRPSPredictor2: gly, ala

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: gly, ala
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DVLtdgGIsK
Nearest Stachelhaus code:: aeo
Stachelhaus code match:: 60% (weak)

AMP-binding (1033..1421): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DamfSGVVlK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 60% (weak)

c00046_3300008.. - Region 1 - sactipeptide

Download region GenBank file

Location: 1 - 10,334 nt. (total: 10,334 nt) Show pHMM detection rules used

Region on contig edge.

sactipeptide: (subtilosin or thuricin or TIGR04404 or TIGR03973)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

Sactipeptides

Sactipeptide predictions

Sactipeptides - No core peptides found.

Sactipeptides

Core peptide predictions

No core peptides found.

c00047_3300008.. - Region 1 - NRPS

Download region GenBank file

Location: 130,379 - 162,056 nt. (total: 31,678 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 130378 - 162056:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg47_135

Search NORINE for peptide: strict or relaxed

AMP-binding (251..642): X

NRPSPredictor2: phe, trp, phg, tyr, bht

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAiTTGgVsK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 70% (weak)