3300009701_11 - 19 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00017_3300009.. (original name was: 3300009701.a:Ga0116228_10000048)

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	bacteriocin	1	9,946

c00020_3300009.. (original name was: 3300009701.a:Ga0116228_10000021)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	NRPS,T1PKS	1	34,304

c00029_3300009.. (original name was: 3300009701.a:Ga0116228_10000396)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	NRPS-like	1	32,535

c00056_3300009.. (original name was: 3300009701.a:Ga0116228_10000435)

Region	Type	From	To	Most similar known cluster		Similarity
Region 56.1	hglE-KS,T1PKS	1	31,594

c00071_3300009.. (original name was: 3300009701.a:Ga0116228_10001998)

Region	Type	From	To	Most similar known cluster		Similarity
Region 71.1	T1PKS,NRPS-like	1	17,349

c00099_3300009.. (original name was: 3300009701.a:Ga0116228_10018556)

Region	Type	From	To	Most similar known cluster		Similarity
Region 99.1	T1PKS,NRPS	1	6,084

c00100_3300009.. (original name was: 3300009701.a:Ga0116228_10017438)

Region	Type	From	To	Most similar known cluster		Similarity
Region 100.1	ladderane	1	6,302

c00110_3300009.. (original name was: 3300009701.a:Ga0116228_10000112)

Region	Type	From	To	Most similar known cluster		Similarity
Region 110.1	NRPS-like	30,459	52,158

c00116_3300009.. (original name was: 3300009701.a:Ga0116228_10002286)

Region	Type	From	To	Most similar known cluster		Similarity
Region 116.1	T1PKS,NRPS-like	1	16,549

c00136_3300009.. (original name was: 3300009701.a:Ga0116228_10000108)

Region	Type	From	To	Most similar known cluster		Similarity
Region 136.1	terpene	28,651	49,583

c00138_3300009.. (original name was: 3300009701.a:Ga0116228_10000133)

Region	Type	From	To	Most similar known cluster		Similarity
Region 138.1	terpene	20,006	40,836

c00154_3300009.. (original name was: 3300009701.a:Ga0116228_10047238)

Region	Type	From	To	Most similar known cluster		Similarity
Region 154.1	NRPS	1	3,464

c00163_3300009.. (original name was: 3300009701.a:Ga0116228_10000081)

Region	Type	From	To	Most similar known cluster		Similarity
Region 163.1	hglE-KS	1	35,886

c00169_3300009.. (original name was: 3300009701.a:Ga0116228_10042970)

Region	Type	From	To	Most similar known cluster		Similarity
Region 169.1	NRPS-like	1	3,678

c00176_3300009.. (original name was: 3300009701.a:Ga0116228_10001367)

Region	Type	From	To	Most similar known cluster		Similarity
Region 176.1	terpene	8,163	20,194

c00179_3300009.. (original name was: 3300009701.a:Ga0116228_10000066)

Region	Type	From	To	Most similar known cluster		Similarity
Region 179.1	NRPS	11,023	58,317

c00190_3300009.. (original name was: 3300009701.a:Ga0116228_10000012)

Region	Type	From	To	Most similar known cluster		Similarity
Region 190.1	NRPS	1	23,555

c00193_3300009.. (original name was: 3300009701.a:Ga0116228_10001108)

Region	Type	From	To	Most similar known cluster		Similarity
Region 193.1	T1PKS,NRPS	1	22,029

c00199_3300009.. (original name was: 3300009701.a:Ga0116228_10000513)

Region	Type	From	To	Most similar known cluster		Similarity
Region 199.1	NRPS,T1PKS	1	29,507

Region	Type	From	To	Similarity
Region 17.1	bacteriocin	1	9,946
Region 20.1	NRPS,T1PKS	1	34,304
Region 29.1	NRPS-like	1	32,535
Region 56.1	hglE-KS,T1PKS	1	31,594
Region 71.1	T1PKS,NRPS-like	1	17,349
Region 99.1	T1PKS,NRPS	1	6,084
Region 100.1	ladderane	1	6,302
Region 110.1	NRPS-like	30,459	52,158
Region 116.1	T1PKS,NRPS-like	1	16,549
Region 136.1	terpene	28,651	49,583
Region 138.1	terpene	20,006	40,836
Region 154.1	NRPS	1	3,464
Region 163.1	hglE-KS	1	35,886
Region 169.1	NRPS-like	1	3,678
Region 176.1	terpene	8,163	20,194
Region 179.1	NRPS	11,023	58,317
Region 190.1	NRPS	1	23,555
Region 193.1	T1PKS,NRPS	1	22,029
Region 199.1	NRPS,T1PKS	1	29,507

No secondary metabolite regions were found in these records:: c00001_3300009.. (original name was: 3300009701.a:Ga0116228_10017836); c00002_3300009.. (original name was: 3300009701.a:Ga0116228_10003911); c00003_3300009.. (original name was: 3300009701.a:Ga0116228_10000007); c00004_3300009.. (original name was: 3300009701.a:Ga0116228_10000688); c00005_3300009.. (original name was: 3300009701.a:Ga0116228_10009170); c00006_3300009.. (original name was: 3300009701.a:Ga0116228_10003599); c00007_3300009.. (original name was: 3300009701.a:Ga0116228_10052560); c00008_3300009.. (original name was: 3300009701.a:Ga0116228_10021389); c00009_3300009.. (original name was: 3300009701.a:Ga0116228_10022732); c00010_3300009.. (original name was: 3300009701.a:Ga0116228_10019421); c00011_3300009.. (original name was: 3300009701.a:Ga0116228_10057223); c00012_3300009.. (original name was: 3300009701.a:Ga0116228_10000258); c00013_3300009.. (original name was: 3300009701.a:Ga0116228_10016894); c00014_3300009.. (original name was: 3300009701.a:Ga0116228_10001034); c00015_3300009.. (original name was: 3300009701.a:Ga0116228_10050459); c00016_3300009.. (original name was: 3300009701.a:Ga0116228_10000070); c00018_3300009.. (original name was: 3300009701.a:Ga0116228_10004568); c00019_3300009.. (original name was: 3300009701.a:Ga0116228_10019246); c00021_3300009.. (original name was: 3300009701.a:Ga0116228_10004933); c00022_3300009.. (original name was: 3300009701.a:Ga0116228_10015323); c00023_3300009.. (original name was: 3300009701.a:Ga0116228_10001591); c00024_3300009.. (original name was: 3300009701.a:Ga0116228_10001839); c00025_3300009.. (original name was: 3300009701.a:Ga0116228_10001075); c00026_3300009.. (original name was: 3300009701.a:Ga0116228_10001054); c00027_3300009.. (original name was: 3300009701.a:Ga0116228_10014722); c00028_3300009.. (original name was: 3300009701.a:Ga0116228_10006267); c00030_3300009.. (original name was: 3300009701.a:Ga0116228_10000025); c00031_3300009.. (original name was: 3300009701.a:Ga0116228_10000038); c00032_3300009.. (original name was: 3300009701.a:Ga0116228_10000538); c00033_3300009.. (original name was: 3300009701.a:Ga0116228_10000558); c00034_3300009.. (original name was: 3300009701.a:Ga0116228_10002690); c00035_3300009.. (original name was: 3300009701.a:Ga0116228_10000791); c00036_3300009.. (original name was: 3300009701.a:Ga0116228_10026130); c00037_3300009.. (original name was: 3300009701.a:Ga0116228_10000590); c00038_3300009.. (original name was: 3300009701.a:Ga0116228_10000039); c00039_3300009.. (original name was: 3300009701.a:Ga0116228_10001907); c00040_3300009.. (original name was: 3300009701.a:Ga0116228_10042191); c00041_3300009.. (original name was: 3300009701.a:Ga0116228_10001559); c00042_3300009.. (original name was: 3300009701.a:Ga0116228_10058229); c00043_3300009.. (original name was: 3300009701.a:Ga0116228_10043922); c00044_3300009.. (original name was: 3300009701.a:Ga0116228_10000780); c00045_3300009.. (original name was: 3300009701.a:Ga0116228_10014926); c00046_3300009.. (original name was: 3300009701.a:Ga0116228_10000515); c00047_3300009.. (original name was: 3300009701.a:Ga0116228_10000010); c00048_3300009.. (original name was: 3300009701.a:Ga0116228_10014241); c00049_3300009.. (original name was: 3300009701.a:Ga0116228_10004257); c00050_3300009.. (original name was: 3300009701.a:Ga0116228_10000003); c00051_3300009.. (original name was: 3300009701.a:Ga0116228_10047357); c00052_3300009.. (original name was: 3300009701.a:Ga0116228_10001269); c00053_3300009.. (original name was: 3300009701.a:Ga0116228_10001290); c00054_3300009.. (original name was: 3300009701.a:Ga0116228_10000136); c00055_3300009.. (original name was: 3300009701.a:Ga0116228_10017290); c00057_3300009.. (original name was: 3300009701.a:Ga0116228_10011058); c00058_3300009.. (original name was: 3300009701.a:Ga0116228_10024792); c00059_3300009.. (original name was: 3300009701.a:Ga0116228_10026444); c00060_3300009.. (original name was: 3300009701.a:Ga0116228_10000006); c00061_3300009.. (original name was: 3300009701.a:Ga0116228_10000329); c00062_3300009.. (original name was: 3300009701.a:Ga0116228_10048097); c00063_3300009.. (original name was: 3300009701.a:Ga0116228_10007710); c00064_3300009.. (original name was: 3300009701.a:Ga0116228_10007170); c00065_3300009.. (original name was: 3300009701.a:Ga0116228_10003198); c00066_3300009.. (original name was: 3300009701.a:Ga0116228_10024834); c00067_3300009.. (original name was: 3300009701.a:Ga0116228_10002772); c00068_3300009.. (original name was: 3300009701.a:Ga0116228_10001667); c00069_3300009.. (original name was: 3300009701.a:Ga0116228_10022614); c00070_3300009.. (original name was: 3300009701.a:Ga0116228_10000275); c00072_3300009.. (original name was: 3300009701.a:Ga0116228_10000389); c00073_3300009.. (original name was: 3300009701.a:Ga0116228_10057899); c00074_3300009.. (original name was: 3300009701.a:Ga0116228_10000676); c00075_3300009.. (original name was: 3300009701.a:Ga0116228_10029180); c00076_3300009.. (original name was: 3300009701.a:Ga0116228_10018195); c00077_3300009.. (original name was: 3300009701.a:Ga0116228_10000818); c00078_3300009.. (original name was: 3300009701.a:Ga0116228_10002670); c00079_3300009.. (original name was: 3300009701.a:Ga0116228_10000532); c00080_3300009.. (original name was: 3300009701.a:Ga0116228_10005031); c00081_3300009.. (original name was: 3300009701.a:Ga0116228_10015606); c00082_3300009.. (original name was: 3300009701.a:Ga0116228_10003519); c00083_3300009.. (original name was: 3300009701.a:Ga0116228_10000046); c00084_3300009.. (original name was: 3300009701.a:Ga0116228_10000997); c00085_3300009.. (original name was: 3300009701.a:Ga0116228_10040546); c00086_3300009.. (original name was: 3300009701.a:Ga0116228_10018270); c00087_3300009.. (original name was: 3300009701.a:Ga0116228_10000349); c00088_3300009.. (original name was: 3300009701.a:Ga0116228_10000054); c00089_3300009.. (original name was: 3300009701.a:Ga0116228_10000049); c00090_3300009.. (original name was: 3300009701.a:Ga0116228_10006745); c00091_3300009.. (original name was: 3300009701.a:Ga0116228_10058115); c00092_3300009.. (original name was: 3300009701.a:Ga0116228_10048650); c00093_3300009.. (original name was: 3300009701.a:Ga0116228_10000619); c00094_3300009.. (original name was: 3300009701.a:Ga0116228_10003072); c00095_3300009.. (original name was: 3300009701.a:Ga0116228_10004296); c00096_3300009.. (original name was: 3300009701.a:Ga0116228_10042377); c00097_3300009.. (original name was: 3300009701.a:Ga0116228_10031268); c00098_3300009.. (original name was: 3300009701.a:Ga0116228_10000004); c00101_3300009.. (original name was: 3300009701.a:Ga0116228_10007324); c00102_3300009.. (original name was: 3300009701.a:Ga0116228_10014820); c00103_3300009.. (original name was: 3300009701.a:Ga0116228_10000151); c00104_3300009.. (original name was: 3300009701.a:Ga0116228_10030910); c00105_3300009.. (original name was: 3300009701.a:Ga0116228_10000089); c00106_3300009.. (original name was: 3300009701.a:Ga0116228_10000857); c00107_3300009.. (original name was: 3300009701.a:Ga0116228_10000056); c00108_3300009.. (original name was: 3300009701.a:Ga0116228_10012300); c00109_3300009.. (original name was: 3300009701.a:Ga0116228_10000129); c00111_3300009.. (original name was: 3300009701.a:Ga0116228_10025081); c00112_3300009.. (original name was: 3300009701.a:Ga0116228_10000009); c00113_3300009.. (original name was: 3300009701.a:Ga0116228_10029110); c00114_3300009.. (original name was: 3300009701.a:Ga0116228_10002340); c00115_3300009.. (original name was: 3300009701.a:Ga0116228_10011378); c00117_3300009.. (original name was: 3300009701.a:Ga0116228_10003622); c00118_3300009.. (original name was: 3300009701.a:Ga0116228_10006842); c00119_3300009.. (original name was: 3300009701.a:Ga0116228_10000480); c00120_3300009.. (original name was: 3300009701.a:Ga0116228_10002186); c00121_3300009.. (original name was: 3300009701.a:Ga0116228_10000131); c00122_3300009.. (original name was: 3300009701.a:Ga0116228_10014095); c00123_3300009.. (original name was: 3300009701.a:Ga0116228_10011069); c00124_3300009.. (original name was: 3300009701.a:Ga0116228_10002228); c00125_3300009.. (original name was: 3300009701.a:Ga0116228_10002170); c00126_3300009.. (original name was: 3300009701.a:Ga0116228_10000194); c00127_3300009.. (original name was: 3300009701.a:Ga0116228_10014224); c00128_3300009.. (original name was: 3300009701.a:Ga0116228_10000045); c00129_3300009.. (original name was: 3300009701.a:Ga0116228_10000367); c00130_3300009.. (original name was: 3300009701.a:Ga0116228_10005023); c00131_3300009.. (original name was: 3300009701.a:Ga0116228_10049291); c00132_3300009.. (original name was: 3300009701.a:Ga0116228_10000077); c00133_3300009.. (original name was: 3300009701.a:Ga0116228_10015328); c00134_3300009.. (original name was: 3300009701.a:Ga0116228_10000014); c00135_3300009.. (original name was: 3300009701.a:Ga0116228_10006113); c00137_3300009.. (original name was: 3300009701.a:Ga0116228_10008497); c00139_3300009.. (original name was: 3300009701.a:Ga0116228_10055688); c00140_3300009.. (original name was: 3300009701.a:Ga0116228_10029579); c00141_3300009.. (original name was: 3300009701.a:Ga0116228_10002219); c00142_3300009.. (original name was: 3300009701.a:Ga0116228_10000079); c00143_3300009.. (original name was: 3300009701.a:Ga0116228_10018884); c00144_3300009.. (original name was: 3300009701.a:Ga0116228_10000659); c00145_3300009.. (original name was: 3300009701.a:Ga0116228_10000008); c00146_3300009.. (original name was: 3300009701.a:Ga0116228_10018609); c00147_3300009.. (original name was: 3300009701.a:Ga0116228_10000437); c00148_3300009.. (original name was: 3300009701.a:Ga0116228_10001926); c00149_3300009.. (original name was: 3300009701.a:Ga0116228_10058451); c00150_3300009.. (original name was: 3300009701.a:Ga0116228_10000240); c00151_3300009.. (original name was: 3300009701.a:Ga0116228_10054776); c00152_3300009.. (original name was: 3300009701.a:Ga0116228_10002263); c00153_3300009.. (original name was: 3300009701.a:Ga0116228_10000625); c00155_3300009.. (original name was: 3300009701.a:Ga0116228_10000055); c00156_3300009.. (original name was: 3300009701.a:Ga0116228_10002946); c00157_3300009.. (original name was: 3300009701.a:Ga0116228_10000051); c00158_3300009.. (original name was: 3300009701.a:Ga0116228_10000443); c00159_3300009.. (original name was: 3300009701.a:Ga0116228_10026009); c00160_3300009.. (original name was: 3300009701.a:Ga0116228_10020126); c00161_3300009.. (original name was: 3300009701.a:Ga0116228_10001025); c00162_3300009.. (original name was: 3300009701.a:Ga0116228_10018005); c00164_3300009.. (original name was: 3300009701.a:Ga0116228_10000694); c00165_3300009.. (original name was: 3300009701.a:Ga0116228_10006823); c00166_3300009.. (original name was: 3300009701.a:Ga0116228_10054604); c00167_3300009.. (original name was: 3300009701.a:Ga0116228_10011841); c00168_3300009.. (original name was: 3300009701.a:Ga0116228_10001229); c00170_3300009.. (original name was: 3300009701.a:Ga0116228_10000080); c00171_3300009.. (original name was: 3300009701.a:Ga0116228_10000001); c00172_3300009.. (original name was: 3300009701.a:Ga0116228_10004757); c00173_3300009.. (original name was: 3300009701.a:Ga0116228_10001462); c00174_3300009.. (original name was: 3300009701.a:Ga0116228_10000219); c00175_3300009.. (original name was: 3300009701.a:Ga0116228_10001562); c00177_3300009.. (original name was: 3300009701.a:Ga0116228_10003576); c00178_3300009.. (original name was: 3300009701.a:Ga0116228_10001038); c00180_3300009.. (original name was: 3300009701.a:Ga0116228_10001653); c00181_3300009.. (original name was: 3300009701.a:Ga0116228_10015455); c00182_3300009.. (original name was: 3300009701.a:Ga0116228_10004989); c00183_3300009.. (original name was: 3300009701.a:Ga0116228_10052766); c00184_3300009.. (original name was: 3300009701.a:Ga0116228_10039241); c00185_3300009.. (original name was: 3300009701.a:Ga0116228_10031506); c00186_3300009.. (original name was: 3300009701.a:Ga0116228_10027975); c00187_3300009.. (original name was: 3300009701.a:Ga0116228_10001052); c00188_3300009.. (original name was: 3300009701.a:Ga0116228_10035319); c00189_3300009.. (original name was: 3300009701.a:Ga0116228_10003250); c00191_3300009.. (original name was: 3300009701.a:Ga0116228_10027934); c00192_3300009.. (original name was: 3300009701.a:Ga0116228_10040056); c00194_3300009.. (original name was: 3300009701.a:Ga0116228_10004095); c00195_3300009.. (original name was: 3300009701.a:Ga0116228_10036689); c00196_3300009.. (original name was: 3300009701.a:Ga0116228_10000598); c00197_3300009.. (original name was: 3300009701.a:Ga0116228_10028115); c00198_3300009.. (original name was: 3300009701.a:Ga0116228_10025210); c00200_3300009.. (original name was: 3300009701.a:Ga0116228_10032165); c00201_3300009.. (original name was: 3300009701.a:Ga0116228_10000350); c00202_3300009.. (original name was: 3300009701.a:Ga0116228_10057619); c00203_3300009.. (original name was: 3300009701.a:Ga0116228_10048348)

Compact view

c00017_3300009.. - Region 1 - bacteriocin

Download region GenBank file

Location: 1 - 9,946 nt. (total: 9,946 nt) Show pHMM detection rules used

Region on contig edge.

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00020_3300009.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 1 - 34,304 nt. (total: 34,304 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 34304:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg20_2

PKS_AT (534..756): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 82.7
inactive: 62.5
Methylmalonyl-CoA: 27.2
Propionyl-CoA: 25.5
Methoxymalonyl-CoA: 21.5
Benzoyl-CoA: 19.6
2-Methylbutyryl-CoA: 18.4
CHC-CoA: 15.5
Ethylmalonyl-CoA: 12.9
Acetyl-CoA: 12.7
Isobutyryl-CoA: 10.7
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
3-Methylbutyryl-CoA: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 75.0%; inactive: 66.7%

ctg20_3

Search NORINE for peptide: strict or relaxed

AMP-binding (539..940): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DmYNigvIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 60% (weak)

ctg20_6

Search NORINE for peptide: strict or relaxed

AMP-binding (23..414): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: aynfVAGhIK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 50% (weak)

c00029_3300009.. - Region 1 - NRPS-like

Download region GenBank file

Location: 1 - 32,535 nt. (total: 32,535 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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NRPS/PKS domains

Detailed domain annotation

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 32535:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg29_10

Search NORINE for peptide: strict or relaxed

AMP-binding (235..620): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: asLngGGTvK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 50% (weak)

c00056_3300009.. - Region 1 - T1PKS,hglE-KS

Download region GenBank file

Location: 1 - 31,594 nt. (total: 31,594 nt) Show pHMM detection rules used

Region on contig edge.

hglE-KS: (hglE or hglD)
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

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Predicted core structure(s)

For candidate cluster 1, location 0 - 31594:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 3357 - 31594:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg56_11

PKS_AT (626..923): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 100.5
Methoxymalonyl-CoA: 40.0
inactive: 32.5
Methylmalonyl-CoA: 23.6
Propionyl-CoA: 15.0
fatty_acid: 12.5
Isobutyryl-CoA: 11.2
CHC-CoA: 11.0
trans-1,2-CPDA: 0.0
Ethylmalonyl-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 79.2%; inactive: 70.8%; 2-Rhyd-Malonyl-CoA: 58.3%

ctg56_14

PKS_AT (674..909): pk

minowa: trans-1,2-CPDA

Prediction, score:

trans-1,2-CPDA: 0.0
inactive: 0.0
fatty_acid: 0.0
Propionyl-CoA: 0.0
Methylmalonyl-CoA: 0.0
Methoxymalonyl-CoA: 0.0
Malonyl-CoA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ATSignature: (unknown)

No matches above 50%

c00071_3300009.. - Region 1 - NRPS-like,T1PKS

Download region GenBank file

Location: 1 - 17,349 nt. (total: 17,349 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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Predicted core structure(s)

For candidate cluster 1, location 0 - 17349:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg71_10

CAL_domain (34..482): pk

minowa: NH2

Prediction, score:

NH2: 147.0
fatty_acid: 25.8
shikimic_acid: 0.0
Acetyl-CoA: -1.0
AHBA: -3.7

c00099_3300009.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 1 - 6,084 nt. (total: 6,084 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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Predicted core structure(s)

For candidate cluster 1, location 0 - 6084:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg99_2

PKS_AT (375..674): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 174.5
inactive: 119.4
Methoxymalonyl-CoA: 73.8
Methylmalonyl-CoA: 56.0
Propionyl-CoA: 44.6
2-Methylbutyryl-CoA: 26.2
CHC-CoA: 25.5
Ethylmalonyl-CoA: 24.1
Isobutyryl-CoA: 22.8
Acetyl-CoA: 18.1
Benzoyl-CoA: 17.8
trans-1,2-CPDA: 17.3
3-Methylbutyryl-CoA: 12.8
fatty_acid: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 91.7%; Methylmalonyl-CoA: 58.3%

c00100_3300009.. - Region 1 - ladderane

Download region GenBank file

Location: 1 - 6,302 nt. (total: 6,302 nt) Show pHMM detection rules used

Region on contig edge.

ladderane: ladderane

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c00110_3300009.. - Region 1 - NRPS-like

Download region GenBank file

Location: 30,459 - 52,158 nt. (total: 21,700 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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Detailed domain annotation

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c00116_3300009.. - Region 1 - NRPS-like,T1PKS

Download region GenBank file

Location: 1 - 16,549 nt. (total: 16,549 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 16549:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ccmal) + (ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg116_4

PKS_AT (566..865): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 220.6
inactive: 190.1
Methylmalonyl-CoA: 76.7
Methoxymalonyl-CoA: 75.8
Propionyl-CoA: 50.1
Isobutyryl-CoA: 43.5
Ethylmalonyl-CoA: 34.5
Benzoyl-CoA: 31.4
CHC-CoA: 22.7
2-Methylbutyryl-CoA: 22.3
Acetyl-CoA: 22.0
trans-1,2-CPDA: 17.0
3-Methylbutyryl-CoA: 10.9
fatty_acid: 8.8

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 95.8%; 2-Rhyd-Malonyl-CoA: 54.2%

ctg116_5

PKS_AT (568..869): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 194.2
inactive: 167.0
Methoxymalonyl-CoA: 63.2
Methylmalonyl-CoA: 57.0
Propionyl-CoA: 41.7
Isobutyryl-CoA: 29.5
Benzoyl-CoA: 26.1
Acetyl-CoA: 19.8
CHC-CoA: 17.2
Ethylmalonyl-CoA: 16.9
trans-1,2-CPDA: 16.6
2-Methylbutyryl-CoA: 15.6
3-Methylbutyryl-CoA: 13.6
fatty_acid: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 95.8%; 2-Rhyd-Malonyl-CoA: 54.2%

ctg116_6

Search NORINE for peptide: strict or relaxed

AMP-binding (2..221): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

c00136_3300009.. - Region 1 - terpene

Download region GenBank file

Location: 28,651 - 49,583 nt. (total: 20,933 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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c00138_3300009.. - Region 1 - terpene

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Location: 20,006 - 40,836 nt. (total: 20,831 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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c00154_3300009.. - Region 1 - NRPS

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Location: 1 - 3,464 nt. (total: 3,464 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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NRPS/PKS domains

Detailed domain annotation

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Predicted core structure(s)

For candidate cluster 1, location 0 - 3464:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg154_1

Search NORINE for peptide: strict or relaxed

AMP-binding (11..412): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: hiiSrsShqK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 30% (weak)

c00163_3300009.. - Region 1 - hglE-KS

Download region GenBank file

Location: 1 - 35,886 nt. (total: 35,886 nt) Show pHMM detection rules used

Region on contig edge.

hglE-KS: (hglE or hglD)

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c00169_3300009.. - Region 1 - NRPS-like

Download region GenBank file

Location: 1 - 3,678 nt. (total: 3,678 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

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Predicted core structure(s)

For candidate cluster 1, location 0 - 3678:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ile)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg169_1

Search NORINE for peptide: strict or relaxed

AMP-binding (13..280): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGVTFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

c00176_3300009.. - Region 1 - terpene

Download region GenBank file

Location: 8,163 - 20,194 nt. (total: 12,032 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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c00179_3300009.. - Region 1 - NRPS

Download region GenBank file

Location: 11,023 - 58,317 nt. (total: 47,295 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

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NRPS/PKS domains

Detailed domain annotation

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Predicted core structure(s)

For candidate cluster 1, location 11022 - 58317:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg179_34

Search NORINE for peptide: strict or relaxed

AMP-binding (512..944): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLydFSLVWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 80% (moderate)

ctg179_35

Search NORINE for peptide: strict or relaxed

AMP-binding (38..447): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: N/A
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DplvtGCVEK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 60% (weak)

c00190_3300009.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 23,555 nt. (total: 23,555 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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Predicted core structure(s)

For candidate cluster 1, location 0 - 23555:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg190_1

Search NORINE for peptide: strict or relaxed

AMP-binding (281..685): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAknFGidiK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 50% (weak)

c00193_3300009.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 1 - 22,029 nt. (total: 22,029 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

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NRPS/PKS domains

Detailed domain annotation

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NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 22029:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (X - X) + (D-ohmal) + (ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg193_1

Search NORINE for peptide: strict or relaxed

AMP-binding (0..331): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: VDWiISfAnK
Nearest Stachelhaus code:: ala-b
Stachelhaus code match:: 70% (weak)

ctg193_2

Search NORINE for peptide: strict or relaxed

AMP-binding (462..866): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

AMP-binding (1538..1938): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DSaLiAEVwK
Nearest Stachelhaus code:: his
Stachelhaus code match:: 70% (weak)

ctg193_3

PKS_AT (539..832): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 161.1
inactive: 122.6
Methoxymalonyl-CoA: 69.3
Methylmalonyl-CoA: 66.2
Isobutyryl-CoA: 45.9
Propionyl-CoA: 43.4
Benzoyl-CoA: 38.8
Ethylmalonyl-CoA: 32.1
Acetyl-CoA: 30.5
2-Methylbutyryl-CoA: 24.3
CHC-CoA: 20.2
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
3-Methylbutyryl-CoA: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 87.5%; Methylmalonyl-CoA: 58.3%

ctg193_4

Search NORINE for peptide: strict or relaxed

AMP-binding (474..874): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLIEK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

c00199_3300009.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 1 - 29,507 nt. (total: 29,507 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

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NRPS/PKS domains

Detailed domain annotation

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Predicted core structure(s)

For candidate cluster 1, location 0 - 29507:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ccmal) + (X) + (ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg199_2

PKS_AT (544..839): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 176.8
inactive: 116.5
Methoxymalonyl-CoA: 63.0
Methylmalonyl-CoA: 54.2
Propionyl-CoA: 43.2
2-Methylbutyryl-CoA: 31.5
Isobutyryl-CoA: 29.3
Benzoyl-CoA: 28.9
CHC-CoA: 28.4
Ethylmalonyl-CoA: 25.6
Acetyl-CoA: 25.1
trans-1,2-CPDA: 14.0
3-Methylbutyryl-CoA: 8.6
fatty_acid: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 87.5%; Methylmalonyl-CoA: 58.3%

ctg199_3

Search NORINE for peptide: strict or relaxed

AMP-binding (1608..2013): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

ctg199_4

PKS_AT (567..853): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 208.6
inactive: 194.5
Methoxymalonyl-CoA: 66.9
Methylmalonyl-CoA: 59.1
Isobutyryl-CoA: 38.0
Propionyl-CoA: 30.1
Benzoyl-CoA: 27.0
Ethylmalonyl-CoA: 16.7
Acetyl-CoA: 14.4
trans-1,2-CPDA: 13.7
3-Methylbutyryl-CoA: 13.4
2-Methylbutyryl-CoA: 7.7
fatty_acid: 0.0
CHC-CoA: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 100.0%; inactive: 95.8%; 2-Rhyd-Malonyl-CoA: 54.2%

ctg199_5

CAL_domain (1..293): pk

minowa: NH2

Prediction, score:

NH2: 153.5
Acetyl-CoA: 32.0
fatty_acid: 15.0
shikimic_acid: 0.0
AHBA: 0.0