3300009824_17 - 9 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00004_3300009.. (original name was: 3300009824.a:Ga0116219_10000331)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	hserlactone	18,263	38,832

c00012_3300009.. (original name was: 3300009824.a:Ga0116219_10000008)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	bacteriocin	195,788	206,672

c00013_3300009.. (original name was: 3300009824.a:Ga0116219_10000024)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	arylpolyene,NRPS-like	71,109	127,010

c00015_3300009.. (original name was: 3300009824.a:Ga0116219_10014331)

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	NRPS	1	5,031

c00025_3300009.. (original name was: 3300009824.a:Ga0116219_10000039)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	terpene	59,214	82,311
Region 25.2	bacteriocin	89,484	100,308

c00042_3300009.. (original name was: 3300009824.a:Ga0116219_10000741)

Region	Type	From	To	Most similar known cluster		Similarity
Region 42.1	T3PKS	1	29,844

c00062_3300009.. (original name was: 3300009824.a:Ga0116219_10001677)

Region	Type	From	To	Most similar known cluster		Similarity
Region 62.1	NRPS-like	1	20,023

c00069_3300009.. (original name was: 3300009824.a:Ga0116219_10000102)

Region	Type	From	To	Most similar known cluster		Similarity
Region 69.1	NRPS	50,962	79,023

Region	Type	From	To	Similarity
Region 4.1	hserlactone	18,263	38,832
Region 12.1	bacteriocin	195,788	206,672
Region 13.1	arylpolyene,NRPS-like	71,109	127,010
Region 15.1	NRPS	1	5,031
Region 25.1	terpene	59,214	82,311
Region 25.2	bacteriocin	89,484	100,308
Region 42.1	T3PKS	1	29,844
Region 62.1	NRPS-like	1	20,023
Region 69.1	NRPS	50,962	79,023

No secondary metabolite regions were found in these records:: c00001_3300009.. (original name was: 3300009824.a:Ga0116219_10032832); c00002_3300009.. (original name was: 3300009824.a:Ga0116219_10026047); c00003_3300009.. (original name was: 3300009824.a:Ga0116219_10020269); c00005_3300009.. (original name was: 3300009824.a:Ga0116219_10000534); c00006_3300009.. (original name was: 3300009824.a:Ga0116219_10004785); c00007_3300009.. (original name was: 3300009824.a:Ga0116219_10000745); c00008_3300009.. (original name was: 3300009824.a:Ga0116219_10000035); c00009_3300009.. (original name was: 3300009824.a:Ga0116219_10001632); c00010_3300009.. (original name was: 3300009824.a:Ga0116219_10000316); c00011_3300009.. (original name was: 3300009824.a:Ga0116219_10009045); c00014_3300009.. (original name was: 3300009824.a:Ga0116219_10026958); c00016_3300009.. (original name was: 3300009824.a:Ga0116219_10000095); c00017_3300009.. (original name was: 3300009824.a:Ga0116219_10000020); c00018_3300009.. (original name was: 3300009824.a:Ga0116219_10000023); c00019_3300009.. (original name was: 3300009824.a:Ga0116219_10004756); c00020_3300009.. (original name was: 3300009824.a:Ga0116219_10003206); c00021_3300009.. (original name was: 3300009824.a:Ga0116219_10001842); c00022_3300009.. (original name was: 3300009824.a:Ga0116219_10014521); c00023_3300009.. (original name was: 3300009824.a:Ga0116219_10003927); c00024_3300009.. (original name was: 3300009824.a:Ga0116219_10002597); c00026_3300009.. (original name was: 3300009824.a:Ga0116219_10003679); c00027_3300009.. (original name was: 3300009824.a:Ga0116219_10000619); c00028_3300009.. (original name was: 3300009824.a:Ga0116219_10002652); c00029_3300009.. (original name was: 3300009824.a:Ga0116219_10000148); c00030_3300009.. (original name was: 3300009824.a:Ga0116219_10005944); c00031_3300009.. (original name was: 3300009824.a:Ga0116219_10016670); c00032_3300009.. (original name was: 3300009824.a:Ga0116219_10017002); c00033_3300009.. (original name was: 3300009824.a:Ga0116219_10000068); c00034_3300009.. (original name was: 3300009824.a:Ga0116219_10001305); c00035_3300009.. (original name was: 3300009824.a:Ga0116219_10002982); c00036_3300009.. (original name was: 3300009824.a:Ga0116219_10003248); c00037_3300009.. (original name was: 3300009824.a:Ga0116219_10020240); c00038_3300009.. (original name was: 3300009824.a:Ga0116219_10000851); c00039_3300009.. (original name was: 3300009824.a:Ga0116219_10000391); c00040_3300009.. (original name was: 3300009824.a:Ga0116219_10000773); c00041_3300009.. (original name was: 3300009824.a:Ga0116219_10011227); c00043_3300009.. (original name was: 3300009824.a:Ga0116219_10002132); c00044_3300009.. (original name was: 3300009824.a:Ga0116219_10002837); c00045_3300009.. (original name was: 3300009824.a:Ga0116219_10001413); c00046_3300009.. (original name was: 3300009824.a:Ga0116219_10017949); c00047_3300009.. (original name was: 3300009824.a:Ga0116219_10015422); c00048_3300009.. (original name was: 3300009824.a:Ga0116219_10001893); c00049_3300009.. (original name was: 3300009824.a:Ga0116219_10029868); c00050_3300009.. (original name was: 3300009824.a:Ga0116219_10003098); c00051_3300009.. (original name was: 3300009824.a:Ga0116219_10000006); c00052_3300009.. (original name was: 3300009824.a:Ga0116219_10000456); c00053_3300009.. (original name was: 3300009824.a:Ga0116219_10000099); c00054_3300009.. (original name was: 3300009824.a:Ga0116219_10002242); c00055_3300009.. (original name was: 3300009824.a:Ga0116219_10000314); c00056_3300009.. (original name was: 3300009824.a:Ga0116219_10000238); c00057_3300009.. (original name was: 3300009824.a:Ga0116219_10000026); c00058_3300009.. (original name was: 3300009824.a:Ga0116219_10000177); c00059_3300009.. (original name was: 3300009824.a:Ga0116219_10005965); c00060_3300009.. (original name was: 3300009824.a:Ga0116219_10000883); c00061_3300009.. (original name was: 3300009824.a:Ga0116219_10000724); c00063_3300009.. (original name was: 3300009824.a:Ga0116219_10034782); c00064_3300009.. (original name was: 3300009824.a:Ga0116219_10003774); c00065_3300009.. (original name was: 3300009824.a:Ga0116219_10000927); c00066_3300009.. (original name was: 3300009824.a:Ga0116219_10013270); c00067_3300009.. (original name was: 3300009824.a:Ga0116219_10001017); c00068_3300009.. (original name was: 3300009824.a:Ga0116219_10002178); c00070_3300009.. (original name was: 3300009824.a:Ga0116219_10000017); c00071_3300009.. (original name was: 3300009824.a:Ga0116219_10000012)

Compact view

c00004_3300009.. - Region 1 - hserlactone

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Location: 18,263 - 38,832 nt. (total: 20,570 nt) Show pHMM detection rules used

hserlactone: Autoind_synth

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core biosynthetic genes

additional biosynthetic genes

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c00012_3300009.. - Region 1 - bacteriocin

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Location: 195,788 - 206,672 nt. (total: 10,885 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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c00013_3300009.. - Region 1 - NRPS-like,arylpolyene

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Location: 71,109 - 127,010 nt. (total: 55,902 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)
NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00015_3300009.. - Region 1 - NRPS

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Location: 1 - 5,031 nt. (total: 5,031 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 5031:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg15_2

Search NORINE for peptide: strict or relaxed

AMP-binding (8..416): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DprHLSLmmK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 60% (weak)

c00025_3300009.. - Region 1 - terpene

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Location: 59,214 - 82,311 nt. (total: 23,098 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00025_3300009.. - Region 2 - bacteriocin

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Location: 89,484 - 100,308 nt. (total: 10,825 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00042_3300009.. - Region 1 - T3PKS

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Location: 1 - 29,844 nt. (total: 29,844 nt) Show pHMM detection rules used

Region on contig edge.

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00062_3300009.. - Region 1 - NRPS-like

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Location: 1 - 20,023 nt. (total: 20,023 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 20023:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg62_2

Search NORINE for peptide: strict or relaxed

AMP-binding (21..418): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DdWctGGiAK
Nearest Stachelhaus code:: N-(1,1-dimethyl-1-allyl)Trp
Stachelhaus code match:: 60% (weak)

c00069_3300009.. - Region 1 - NRPS

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Location: 50,962 - 79,023 nt. (total: 28,062 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 50961 - 79023:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ile)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg69_64

Search NORINE for peptide: strict or relaxed

AMP-binding (36..439): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFfvGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 80% (moderate)