3300010263_6 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00027_3300010.. (original name was: 3300010263.a:Ga0134105_1000122)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	T1PKS	35,890	84,154

c00052_3300010.. (original name was: 3300010263.a:Ga0134105_1001315)

Region	Type	From	To	Most similar known cluster		Similarity
Region 52.1	bacteriocin	2,174	12,986

c00059_3300010.. (original name was: 3300010263.a:Ga0134105_1000031)

Region	Type	From	To	Most similar known cluster		Similarity
Region 59.1	bacteriocin	50,166	62,349

c00070_3300010.. (original name was: 3300010263.a:Ga0134105_1000567)

Region	Type	From	To	Most similar known cluster		Similarity
Region 70.1	NRPS	1	36,783

Region	Type	From	To	Similarity
Region 27.1	T1PKS	35,890	84,154
Region 52.1	bacteriocin	2,174	12,986
Region 59.1	bacteriocin	50,166	62,349
Region 70.1	NRPS	1	36,783

No secondary metabolite regions were found in these records:: c00001_3300010.. (original name was: 3300010263.a:Ga0134105_1006375); c00002_3300010.. (original name was: 3300010263.a:Ga0134105_1006680); c00003_3300010.. (original name was: 3300010263.a:Ga0134105_1003766); c00004_3300010.. (original name was: 3300010263.a:Ga0134105_1000954); c00005_3300010.. (original name was: 3300010263.a:Ga0134105_1000423); c00006_3300010.. (original name was: 3300010263.a:Ga0134105_1000547); c00007_3300010.. (original name was: 3300010263.a:Ga0134105_1000114); c00008_3300010.. (original name was: 3300010263.a:Ga0134105_1001141); c00009_3300010.. (original name was: 3300010263.a:Ga0134105_1000711); c00010_3300010.. (original name was: 3300010263.a:Ga0134105_1000032); c00011_3300010.. (original name was: 3300010263.a:Ga0134105_1008301); c00012_3300010.. (original name was: 3300010263.a:Ga0134105_1001031); c00013_3300010.. (original name was: 3300010263.a:Ga0134105_1002902); c00014_3300010.. (original name was: 3300010263.a:Ga0134105_1006963); c00015_3300010.. (original name was: 3300010263.a:Ga0134105_1000485); c00016_3300010.. (original name was: 3300010263.a:Ga0134105_1004545); c00017_3300010.. (original name was: 3300010263.a:Ga0134105_1002970); c00018_3300010.. (original name was: 3300010263.a:Ga0134105_1002657); c00019_3300010.. (original name was: 3300010263.a:Ga0134105_1004900); c00020_3300010.. (original name was: 3300010263.a:Ga0134105_1002572); c00021_3300010.. (original name was: 3300010263.a:Ga0134105_1000043); c00022_3300010.. (original name was: 3300010263.a:Ga0134105_1000560); c00023_3300010.. (original name was: 3300010263.a:Ga0134105_1000754); c00024_3300010.. (original name was: 3300010263.a:Ga0134105_1000639); c00025_3300010.. (original name was: 3300010263.a:Ga0134105_1000457); c00026_3300010.. (original name was: 3300010263.a:Ga0134105_1000263); c00028_3300010.. (original name was: 3300010263.a:Ga0134105_1000228); c00029_3300010.. (original name was: 3300010263.a:Ga0134105_1001262); c00030_3300010.. (original name was: 3300010263.a:Ga0134105_1000240); c00031_3300010.. (original name was: 3300010263.a:Ga0134105_1001779); c00032_3300010.. (original name was: 3300010263.a:Ga0134105_1000033); c00033_3300010.. (original name was: 3300010263.a:Ga0134105_1000691); c00034_3300010.. (original name was: 3300010263.a:Ga0134105_1000818); c00035_3300010.. (original name was: 3300010263.a:Ga0134105_1000236); c00036_3300010.. (original name was: 3300010263.a:Ga0134105_1000330); c00037_3300010.. (original name was: 3300010263.a:Ga0134105_1000455); c00038_3300010.. (original name was: 3300010263.a:Ga0134105_1001619); c00039_3300010.. (original name was: 3300010263.a:Ga0134105_1001035); c00040_3300010.. (original name was: 3300010263.a:Ga0134105_1000841); c00041_3300010.. (original name was: 3300010263.a:Ga0134105_1000996); c00042_3300010.. (original name was: 3300010263.a:Ga0134105_1000459); c00043_3300010.. (original name was: 3300010263.a:Ga0134105_1000653); c00044_3300010.. (original name was: 3300010263.a:Ga0134105_1000168); c00045_3300010.. (original name was: 3300010263.a:Ga0134105_1000991); c00046_3300010.. (original name was: 3300010263.a:Ga0134105_1000049); c00047_3300010.. (original name was: 3300010263.a:Ga0134105_1000922); c00048_3300010.. (original name was: 3300010263.a:Ga0134105_1000311); c00049_3300010.. (original name was: 3300010263.a:Ga0134105_1001254); c00050_3300010.. (original name was: 3300010263.a:Ga0134105_1000187); c00051_3300010.. (original name was: 3300010263.a:Ga0134105_1000539); c00053_3300010.. (original name was: 3300010263.a:Ga0134105_1002188); c00054_3300010.. (original name was: 3300010263.a:Ga0134105_1000210); c00055_3300010.. (original name was: 3300010263.a:Ga0134105_1002150); c00056_3300010.. (original name was: 3300010263.a:Ga0134105_1007459); c00057_3300010.. (original name was: 3300010263.a:Ga0134105_1001445); c00058_3300010.. (original name was: 3300010263.a:Ga0134105_1001292); c00060_3300010.. (original name was: 3300010263.a:Ga0134105_1000182); c00061_3300010.. (original name was: 3300010263.a:Ga0134105_1000884); c00062_3300010.. (original name was: 3300010263.a:Ga0134105_1002743); c00063_3300010.. (original name was: 3300010263.a:Ga0134105_1000997); c00064_3300010.. (original name was: 3300010263.a:Ga0134105_1000320); c00065_3300010.. (original name was: 3300010263.a:Ga0134105_1000126); c00066_3300010.. (original name was: 3300010263.a:Ga0134105_1004394); c00067_3300010.. (original name was: 3300010263.a:Ga0134105_1000207); c00068_3300010.. (original name was: 3300010263.a:Ga0134105_1001993); c00069_3300010.. (original name was: 3300010263.a:Ga0134105_1001052); c00071_3300010.. (original name was: 3300010263.a:Ga0134105_1001366); c00072_3300010.. (original name was: 3300010263.a:Ga0134105_1000294); c00073_3300010.. (original name was: 3300010263.a:Ga0134105_1001377); c00074_3300010.. (original name was: 3300010263.a:Ga0134105_1004916); c00075_3300010.. (original name was: 3300010263.a:Ga0134105_1002879); c00076_3300010.. (original name was: 3300010263.a:Ga0134105_1000163); c00077_3300010.. (original name was: 3300010263.a:Ga0134105_1000260)

Compact view

c00027_3300010.. - Region 1 - T1PKS

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Location: 35,890 - 84,154 nt. (total: 48,265 nt) Show pHMM detection rules used

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00052_3300010.. - Region 1 - bacteriocin

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Location: 2,174 - 12,986 nt. (total: 10,813 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00059_3300010.. - Region 1 - bacteriocin

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Location: 50,166 - 62,349 nt. (total: 12,184 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00070_3300010.. - Region 1 - NRPS

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Location: 1 - 36,783 nt. (total: 36,783 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 36783:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (asp)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg70_9

Search NORINE for peptide: strict or relaxed

AMP-binding (29..424): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DmFqLGMVyK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 70% (weak)

ctg70_12

Search NORINE for peptide: strict or relaxed

AMP-binding (516..921): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVaHVsK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 80% (moderate)