3300010281_8 - 4 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00028_3300010.. (original name was: 3300010281.a:Ga0134090_1000117)

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	bacteriocin	24,446	36,629

c00036_3300010.. (original name was: 3300010281.a:Ga0134090_1001106)

Region	Type	From	To	Most similar known cluster		Similarity
Region 36.1	bacteriocin	2,176	12,988

c00041_3300010.. (original name was: 3300010281.a:Ga0134090_1000253)

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	NRPS	9,805	50,829

c00062_3300010.. (original name was: 3300010281.a:Ga0134090_1000102)

Region	Type	From	To	Most similar known cluster		Similarity
Region 62.1	T1PKS	7,846	56,110

Region	Type	From	To	Similarity
Region 28.1	bacteriocin	24,446	36,629
Region 36.1	bacteriocin	2,176	12,988
Region 41.1	NRPS	9,805	50,829
Region 62.1	T1PKS	7,846	56,110

No secondary metabolite regions were found in these records:: c00001_3300010.. (original name was: 3300010281.a:Ga0134090_1003363); c00002_3300010.. (original name was: 3300010281.a:Ga0134090_1010803); c00003_3300010.. (original name was: 3300010281.a:Ga0134090_1002053); c00004_3300010.. (original name was: 3300010281.a:Ga0134090_1001447); c00005_3300010.. (original name was: 3300010281.a:Ga0134090_1000458); c00006_3300010.. (original name was: 3300010281.a:Ga0134090_1000190); c00007_3300010.. (original name was: 3300010281.a:Ga0134090_1001063); c00008_3300010.. (original name was: 3300010281.a:Ga0134090_1000038); c00009_3300010.. (original name was: 3300010281.a:Ga0134090_1000419); c00010_3300010.. (original name was: 3300010281.a:Ga0134090_1000218); c00011_3300010.. (original name was: 3300010281.a:Ga0134090_1000151); c00012_3300010.. (original name was: 3300010281.a:Ga0134090_1000155); c00013_3300010.. (original name was: 3300010281.a:Ga0134090_1009234); c00014_3300010.. (original name was: 3300010281.a:Ga0134090_1000075); c00015_3300010.. (original name was: 3300010281.a:Ga0134090_1000097); c00016_3300010.. (original name was: 3300010281.a:Ga0134090_1007275); c00017_3300010.. (original name was: 3300010281.a:Ga0134090_1001635); c00018_3300010.. (original name was: 3300010281.a:Ga0134090_1000041); c00019_3300010.. (original name was: 3300010281.a:Ga0134090_1000854); c00020_3300010.. (original name was: 3300010281.a:Ga0134090_1000078); c00021_3300010.. (original name was: 3300010281.a:Ga0134090_1000369); c00022_3300010.. (original name was: 3300010281.a:Ga0134090_1001055); c00023_3300010.. (original name was: 3300010281.a:Ga0134090_1000503); c00024_3300010.. (original name was: 3300010281.a:Ga0134090_1008026); c00025_3300010.. (original name was: 3300010281.a:Ga0134090_1000808); c00026_3300010.. (original name was: 3300010281.a:Ga0134090_1000226); c00027_3300010.. (original name was: 3300010281.a:Ga0134090_1000699); c00029_3300010.. (original name was: 3300010281.a:Ga0134090_1003515); c00030_3300010.. (original name was: 3300010281.a:Ga0134090_1004582); c00031_3300010.. (original name was: 3300010281.a:Ga0134090_1000339); c00032_3300010.. (original name was: 3300010281.a:Ga0134090_1000436); c00033_3300010.. (original name was: 3300010281.a:Ga0134090_1000804); c00034_3300010.. (original name was: 3300010281.a:Ga0134090_1001439); c00035_3300010.. (original name was: 3300010281.a:Ga0134090_1000734); c00037_3300010.. (original name was: 3300010281.a:Ga0134090_1000136); c00038_3300010.. (original name was: 3300010281.a:Ga0134090_1000142); c00039_3300010.. (original name was: 3300010281.a:Ga0134090_1000856); c00040_3300010.. (original name was: 3300010281.a:Ga0134090_1000641); c00042_3300010.. (original name was: 3300010281.a:Ga0134090_1000112); c00043_3300010.. (original name was: 3300010281.a:Ga0134090_1000206); c00044_3300010.. (original name was: 3300010281.a:Ga0134090_1000153); c00045_3300010.. (original name was: 3300010281.a:Ga0134090_1000541); c00046_3300010.. (original name was: 3300010281.a:Ga0134090_1000223); c00047_3300010.. (original name was: 3300010281.a:Ga0134090_1002432); c00048_3300010.. (original name was: 3300010281.a:Ga0134090_1000961); c00049_3300010.. (original name was: 3300010281.a:Ga0134090_1001155); c00050_3300010.. (original name was: 3300010281.a:Ga0134090_1001825); c00051_3300010.. (original name was: 3300010281.a:Ga0134090_1000585); c00052_3300010.. (original name was: 3300010281.a:Ga0134090_1000003); c00053_3300010.. (original name was: 3300010281.a:Ga0134090_1001167); c00054_3300010.. (original name was: 3300010281.a:Ga0134090_1000359); c00055_3300010.. (original name was: 3300010281.a:Ga0134090_1000158); c00056_3300010.. (original name was: 3300010281.a:Ga0134090_1002038); c00057_3300010.. (original name was: 3300010281.a:Ga0134090_1000030); c00058_3300010.. (original name was: 3300010281.a:Ga0134090_1002164); c00059_3300010.. (original name was: 3300010281.a:Ga0134090_1000160); c00060_3300010.. (original name was: 3300010281.a:Ga0134090_1000271); c00061_3300010.. (original name was: 3300010281.a:Ga0134090_1001241); c00063_3300010.. (original name was: 3300010281.a:Ga0134090_1003854); c00064_3300010.. (original name was: 3300010281.a:Ga0134090_1000094)

Compact view

c00028_3300010.. - Region 1 - bacteriocin

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Location: 24,446 - 36,629 nt. (total: 12,184 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00036_3300010.. - Region 1 - bacteriocin

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Location: 2,176 - 12,988 nt. (total: 10,813 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00041_3300010.. - Region 1 - NRPS

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Location: 9,805 - 50,829 nt. (total: 41,025 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 9804 - 50829:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (asp)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg41_20

Search NORINE for peptide: strict or relaxed

AMP-binding (29..424): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DmFqLGMVyK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 70% (weak)

ctg41_24

Search NORINE for peptide: strict or relaxed

AMP-binding (518..923): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVaHVsK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 80% (moderate)

c00062_3300010.. - Region 1 - T1PKS

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Location: 7,846 - 56,110 nt. (total: 48,265 nt) Show pHMM detection rules used

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains