3300011493_1 - 8 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00007_3300011.. (original name was: 3300011493.a:Ga0120857_100068)

Region	Type	From	To	Most similar known cluster		Similarity
Region 7.1	NRPS	1	38,052

c00021_3300011.. (original name was: 3300011493.a:Ga0120857_100043)

Region	Type	From	To	Most similar known cluster		Similarity
Region 21.1	NRPS	29,560	51,543

c00027_3300011.. (original name was: 3300011493.a:Ga0120857_100040)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	NRPS	29,958	59,566

c00042_3300011.. (original name was: 3300011493.a:Ga0120857_100026)

Region	Type	From	To	Most similar known cluster		Similarity
Region 42.1	bacteriocin	68,484	79,320

c00049_3300011.. (original name was: 3300011493.a:Ga0120857_100012)

Region	Type	From	To	Most similar known cluster		Similarity
Region 49.1	NAGGN	49,626	64,280

c00051_3300011.. (original name was: 3300011493.a:Ga0120857_100016)

Region	Type	From	To	Most similar known cluster		Similarity
Region 51.1	bacteriocin	118,886	129,635

c00069_3300011.. (original name was: 3300011493.a:Ga0120857_100020)

Region	Type	From	To	Most similar known cluster		Similarity
Region 69.1	NRPS	30,444	83,406

c00070_3300011.. (original name was: 3300011493.a:Ga0120857_100056)

Region	Type	From	To	Most similar known cluster		Similarity
Region 70.1	LAP	9,590	39,953

Region	Type	From	To	Similarity
Region 7.1	NRPS	1	38,052
Region 21.1	NRPS	29,560	51,543
Region 27.1	NRPS	29,958	59,566
Region 42.1	bacteriocin	68,484	79,320
Region 49.1	NAGGN	49,626	64,280
Region 51.1	bacteriocin	118,886	129,635
Region 69.1	NRPS	30,444	83,406
Region 70.1	LAP	9,590	39,953

No secondary metabolite regions were found in these records:: c00001_3300011.. (original name was: 3300011493.a:Ga0120857_100134); c00002_3300011.. (original name was: 3300011493.a:Ga0120857_100062); c00003_3300011.. (original name was: 3300011493.a:Ga0120857_100156); c00004_3300011.. (original name was: 3300011493.a:Ga0120857_100254); c00005_3300011.. (original name was: 3300011493.a:Ga0120857_100224); c00006_3300011.. (original name was: 3300011493.a:Ga0120857_100086); c00008_3300011.. (original name was: 3300011493.a:Ga0120857_100003); c00009_3300011.. (original name was: 3300011493.a:Ga0120857_100185); c00010_3300011.. (original name was: 3300011493.a:Ga0120857_100004); c00011_3300011.. (original name was: 3300011493.a:Ga0120857_100074); c00012_3300011.. (original name was: 3300011493.a:Ga0120857_100028); c00013_3300011.. (original name was: 3300011493.a:Ga0120857_100153); c00014_3300011.. (original name was: 3300011493.a:Ga0120857_100002); c00015_3300011.. (original name was: 3300011493.a:Ga0120857_100117); c00016_3300011.. (original name was: 3300011493.a:Ga0120857_100049); c00017_3300011.. (original name was: 3300011493.a:Ga0120857_100121); c00018_3300011.. (original name was: 3300011493.a:Ga0120857_100060); c00019_3300011.. (original name was: 3300011493.a:Ga0120857_100027); c00020_3300011.. (original name was: 3300011493.a:Ga0120857_100115); c00022_3300011.. (original name was: 3300011493.a:Ga0120857_100046); c00023_3300011.. (original name was: 3300011493.a:Ga0120857_100057); c00024_3300011.. (original name was: 3300011493.a:Ga0120857_100050); c00025_3300011.. (original name was: 3300011493.a:Ga0120857_100030); c00026_3300011.. (original name was: 3300011493.a:Ga0120857_100017); c00028_3300011.. (original name was: 3300011493.a:Ga0120857_100009); c00029_3300011.. (original name was: 3300011493.a:Ga0120857_100039); c00030_3300011.. (original name was: 3300011493.a:Ga0120857_100025); c00031_3300011.. (original name was: 3300011493.a:Ga0120857_100219); c00032_3300011.. (original name was: 3300011493.a:Ga0120857_100061); c00033_3300011.. (original name was: 3300011493.a:Ga0120857_100015); c00034_3300011.. (original name was: 3300011493.a:Ga0120857_100071); c00035_3300011.. (original name was: 3300011493.a:Ga0120857_100005); c00036_3300011.. (original name was: 3300011493.a:Ga0120857_100288); c00037_3300011.. (original name was: 3300011493.a:Ga0120857_100047); c00038_3300011.. (original name was: 3300011493.a:Ga0120857_100054); c00039_3300011.. (original name was: 3300011493.a:Ga0120857_100033); c00040_3300011.. (original name was: 3300011493.a:Ga0120857_100008); c00041_3300011.. (original name was: 3300011493.a:Ga0120857_100035); c00043_3300011.. (original name was: 3300011493.a:Ga0120857_100022); c00044_3300011.. (original name was: 3300011493.a:Ga0120857_100195); c00045_3300011.. (original name was: 3300011493.a:Ga0120857_100024); c00046_3300011.. (original name was: 3300011493.a:Ga0120857_100011); c00047_3300011.. (original name was: 3300011493.a:Ga0120857_100010); c00048_3300011.. (original name was: 3300011493.a:Ga0120857_100023); c00050_3300011.. (original name was: 3300011493.a:Ga0120857_100055); c00052_3300011.. (original name was: 3300011493.a:Ga0120857_100070); c00053_3300011.. (original name was: 3300011493.a:Ga0120857_100001); c00054_3300011.. (original name was: 3300011493.a:Ga0120857_100014); c00055_3300011.. (original name was: 3300011493.a:Ga0120857_100032); c00056_3300011.. (original name was: 3300011493.a:Ga0120857_100018); c00057_3300011.. (original name was: 3300011493.a:Ga0120857_100097); c00058_3300011.. (original name was: 3300011493.a:Ga0120857_100118); c00059_3300011.. (original name was: 3300011493.a:Ga0120857_100007); c00060_3300011.. (original name was: 3300011493.a:Ga0120857_100013); c00061_3300011.. (original name was: 3300011493.a:Ga0120857_100034); c00062_3300011.. (original name was: 3300011493.a:Ga0120857_100098); c00063_3300011.. (original name was: 3300011493.a:Ga0120857_100150); c00064_3300011.. (original name was: 3300011493.a:Ga0120857_100109); c00065_3300011.. (original name was: 3300011493.a:Ga0120857_100006); c00066_3300011.. (original name was: 3300011493.a:Ga0120857_100128); c00067_3300011.. (original name was: 3300011493.a:Ga0120857_100029); c00068_3300011.. (original name was: 3300011493.a:Ga0120857_100106); c00071_3300011.. (original name was: 3300011493.a:Ga0120857_100172); c00072_3300011.. (original name was: 3300011493.a:Ga0120857_100037)

Compact view

c00007_3300011.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 38,052 nt. (total: 38,052 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 38052:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (thr) + (D-ser - ala) + (asp) + (ser - lys) + (thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg7_1

Search NORINE for peptide: strict or relaxed

AMP-binding (1247..1652): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg7_2

Search NORINE for peptide: strict or relaxed

AMP-binding (513..907): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHVSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (1584..1984): lys

NRPSPredictor2: lys

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: glu, gln
Single AA prediction:: lys

Stachelhaus prediction details:

Stachelhaus sequence:: DgeccGGVtK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 50% (weak)

ctg7_9

Search NORINE for peptide: strict or relaxed

AMP-binding (457..850): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

ctg7_10

Search NORINE for peptide: strict or relaxed

AMP-binding (516..910): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (2014..2404): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLwNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 90% (moderate)

ctg7_11

Search NORINE for peptide: strict or relaxed

AMP-binding (603..1005): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

c00021_3300011.. - Region 1 - NRPS

Download region GenBank file

Location: 29,560 - 51,543 nt. (total: 21,984 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00027_3300011.. - Region 1 - NRPS

Download region GenBank file

Location: 29,958 - 59,566 nt. (total: 29,609 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 29957 - 59566:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-gln - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg27_59

Search NORINE for peptide: strict or relaxed

AMP-binding (503..902): gln

NRPSPredictor2: gln

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAWQlGLIDK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 90% (moderate)

AMP-binding (2025..2431): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiWeLtadDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 50% (weak)

c00042_3300011.. - Region 1 - bacteriocin

Download region GenBank file

Location: 68,484 - 79,320 nt. (total: 10,837 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00049_3300011.. - Region 1 - NAGGN

Download region GenBank file

Location: 49,626 - 64,280 nt. (total: 14,655 nt) Show pHMM detection rules used

NAGGN: ((TIGR03104 or cds(GATase_7 and Asn_synthase)) and TIGR03103 and (TIGR03106 or Peptidase_M42))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00051_3300011.. - Region 1 - bacteriocin

Download region GenBank file

Location: 118,886 - 129,635 nt. (total: 10,750 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00069_3300011.. - Region 1 - NRPS

Download region GenBank file

Location: 30,444 - 83,406 nt. (total: 52,963 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 30443 - 83406:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - D-X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg69_52

Search NORINE for peptide: strict or relaxed

CAL_domain (42..482): pk

minowa: NH2

Prediction, score:

NH2: 155.4
Acetyl-CoA: 55.4
fatty_acid: 26.4
AHBA: 12.4
shikimic_acid: 2.2

AMP-binding (1133..1530): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFGRINK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (2184..2588): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAegiGAVMK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 70% (weak)

AMP-binding (3711..4117): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiWeLtadDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 50% (weak)

c00070_3300011.. - Region 1 - LAP

Download region GenBank file

Location: 9,590 - 39,953 nt. (total: 30,364 nt) Show pHMM detection rules used

LAP: ((goadsporin_like or PF00881 or TIGR03605) and (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it