3300011633_1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00020_3300011.. (original name was: 3300011633.a:Ga0120945_100031)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	NRPS	1	81,911

c00076_3300011.. (original name was: 3300011633.a:Ga0120945_100117)

Region	Type	From	To	Most similar known cluster		Similarity
Region 76.1	NAGGN	1	9,771

c00093_3300011.. (original name was: 3300011633.a:Ga0120945_100014)

Region	Type	From	To	Most similar known cluster		Similarity
Region 93.1	NRPS-like	150,010	192,778

Region	Type	From	To	Similarity
Region 20.1	NRPS	1	81,911
Region 76.1	NAGGN	1	9,771
Region 93.1	NRPS-like	150,010	192,778

No secondary metabolite regions were found in these records:: c00001_3300011.. (original name was: 3300011633.a:Ga0120945_100024); c00002_3300011.. (original name was: 3300011633.a:Ga0120945_100021); c00003_3300011.. (original name was: 3300011633.a:Ga0120945_100057); c00004_3300011.. (original name was: 3300011633.a:Ga0120945_100126); c00005_3300011.. (original name was: 3300011633.a:Ga0120945_100060); c00006_3300011.. (original name was: 3300011633.a:Ga0120945_100103); c00007_3300011.. (original name was: 3300011633.a:Ga0120945_100101); c00008_3300011.. (original name was: 3300011633.a:Ga0120945_100121); c00009_3300011.. (original name was: 3300011633.a:Ga0120945_100052); c00010_3300011.. (original name was: 3300011633.a:Ga0120945_100120); c00011_3300011.. (original name was: 3300011633.a:Ga0120945_100079); c00012_3300011.. (original name was: 3300011633.a:Ga0120945_100110); c00013_3300011.. (original name was: 3300011633.a:Ga0120945_100123); c00014_3300011.. (original name was: 3300011633.a:Ga0120945_100062); c00015_3300011.. (original name was: 3300011633.a:Ga0120945_100058); c00016_3300011.. (original name was: 3300011633.a:Ga0120945_100125); c00017_3300011.. (original name was: 3300011633.a:Ga0120945_100016); c00018_3300011.. (original name was: 3300011633.a:Ga0120945_100053); c00019_3300011.. (original name was: 3300011633.a:Ga0120945_100051); c00021_3300011.. (original name was: 3300011633.a:Ga0120945_100070); c00022_3300011.. (original name was: 3300011633.a:Ga0120945_100043); c00023_3300011.. (original name was: 3300011633.a:Ga0120945_100073); c00024_3300011.. (original name was: 3300011633.a:Ga0120945_100090); c00025_3300011.. (original name was: 3300011633.a:Ga0120945_100089); c00026_3300011.. (original name was: 3300011633.a:Ga0120945_100100); c00027_3300011.. (original name was: 3300011633.a:Ga0120945_100098); c00028_3300011.. (original name was: 3300011633.a:Ga0120945_100072); c00029_3300011.. (original name was: 3300011633.a:Ga0120945_100038); c00030_3300011.. (original name was: 3300011633.a:Ga0120945_100113); c00031_3300011.. (original name was: 3300011633.a:Ga0120945_100047); c00032_3300011.. (original name was: 3300011633.a:Ga0120945_100119); c00033_3300011.. (original name was: 3300011633.a:Ga0120945_100036); c00034_3300011.. (original name was: 3300011633.a:Ga0120945_100037); c00035_3300011.. (original name was: 3300011633.a:Ga0120945_100046); c00036_3300011.. (original name was: 3300011633.a:Ga0120945_100109); c00037_3300011.. (original name was: 3300011633.a:Ga0120945_100095); c00038_3300011.. (original name was: 3300011633.a:Ga0120945_100078); c00039_3300011.. (original name was: 3300011633.a:Ga0120945_100025); c00040_3300011.. (original name was: 3300011633.a:Ga0120945_100008); c00041_3300011.. (original name was: 3300011633.a:Ga0120945_100118); c00042_3300011.. (original name was: 3300011633.a:Ga0120945_100087); c00043_3300011.. (original name was: 3300011633.a:Ga0120945_100032); c00044_3300011.. (original name was: 3300011633.a:Ga0120945_100106); c00045_3300011.. (original name was: 3300011633.a:Ga0120945_100055); c00046_3300011.. (original name was: 3300011633.a:Ga0120945_100131); c00047_3300011.. (original name was: 3300011633.a:Ga0120945_100069); c00048_3300011.. (original name was: 3300011633.a:Ga0120945_100081); c00049_3300011.. (original name was: 3300011633.a:Ga0120945_100013); c00050_3300011.. (original name was: 3300011633.a:Ga0120945_100077); c00051_3300011.. (original name was: 3300011633.a:Ga0120945_100091); c00052_3300011.. (original name was: 3300011633.a:Ga0120945_100162); c00053_3300011.. (original name was: 3300011633.a:Ga0120945_100042); c00054_3300011.. (original name was: 3300011633.a:Ga0120945_100108); c00055_3300011.. (original name was: 3300011633.a:Ga0120945_100033); c00056_3300011.. (original name was: 3300011633.a:Ga0120945_100071); c00057_3300011.. (original name was: 3300011633.a:Ga0120945_100075); c00058_3300011.. (original name was: 3300011633.a:Ga0120945_100083); c00059_3300011.. (original name was: 3300011633.a:Ga0120945_100132); c00060_3300011.. (original name was: 3300011633.a:Ga0120945_100114); c00061_3300011.. (original name was: 3300011633.a:Ga0120945_100050); c00062_3300011.. (original name was: 3300011633.a:Ga0120945_100061); c00063_3300011.. (original name was: 3300011633.a:Ga0120945_100074); c00064_3300011.. (original name was: 3300011633.a:Ga0120945_100076); c00065_3300011.. (original name was: 3300011633.a:Ga0120945_100049); c00066_3300011.. (original name was: 3300011633.a:Ga0120945_100048); c00067_3300011.. (original name was: 3300011633.a:Ga0120945_100030); c00068_3300011.. (original name was: 3300011633.a:Ga0120945_100111); c00069_3300011.. (original name was: 3300011633.a:Ga0120945_100068); c00070_3300011.. (original name was: 3300011633.a:Ga0120945_100122); c00071_3300011.. (original name was: 3300011633.a:Ga0120945_100099); c00072_3300011.. (original name was: 3300011633.a:Ga0120945_100107); c00073_3300011.. (original name was: 3300011633.a:Ga0120945_100029); c00074_3300011.. (original name was: 3300011633.a:Ga0120945_100102); c00075_3300011.. (original name was: 3300011633.a:Ga0120945_100082); c00077_3300011.. (original name was: 3300011633.a:Ga0120945_100133); c00078_3300011.. (original name was: 3300011633.a:Ga0120945_100086); c00079_3300011.. (original name was: 3300011633.a:Ga0120945_100044); c00080_3300011.. (original name was: 3300011633.a:Ga0120945_100059); c00081_3300011.. (original name was: 3300011633.a:Ga0120945_100011); c00082_3300011.. (original name was: 3300011633.a:Ga0120945_100088); c00083_3300011.. (original name was: 3300011633.a:Ga0120945_100128); c00084_3300011.. (original name was: 3300011633.a:Ga0120945_100085); c00085_3300011.. (original name was: 3300011633.a:Ga0120945_100115); c00086_3300011.. (original name was: 3300011633.a:Ga0120945_100063); c00087_3300011.. (original name was: 3300011633.a:Ga0120945_100104); c00088_3300011.. (original name was: 3300011633.a:Ga0120945_100105); c00089_3300011.. (original name was: 3300011633.a:Ga0120945_100017); c00090_3300011.. (original name was: 3300011633.a:Ga0120945_100097); c00091_3300011.. (original name was: 3300011633.a:Ga0120945_100012); c00092_3300011.. (original name was: 3300011633.a:Ga0120945_100041); c00094_3300011.. (original name was: 3300011633.a:Ga0120945_100093); c00095_3300011.. (original name was: 3300011633.a:Ga0120945_100094); c00096_3300011.. (original name was: 3300011633.a:Ga0120945_100112); c00097_3300011.. (original name was: 3300011633.a:Ga0120945_100015); c00098_3300011.. (original name was: 3300011633.a:Ga0120945_100018)

Compact view

c00020_3300011.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 81,911 nt. (total: 81,911 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 81911:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - D-X - X) + (asp - X - thr) + (asp) + (thr - D-thr - lys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg20_1

Search NORINE for peptide: strict or relaxed

CAL_domain (41..482): pk

minowa: NH2

Prediction, score:

NH2: 161.0
Acetyl-CoA: 38.1
AHBA: 14.3
fatty_acid: 10.4
shikimic_acid: -2.8

AMP-binding (1131..1528): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFGRINK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (2182..2586): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAegiGAVMK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 70% (weak)

AMP-binding (3708..4114): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiWeLtadDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 50% (weak)

ctg20_17

Search NORINE for peptide: strict or relaxed

AMP-binding (509..893): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

AMP-binding (1552..1961): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DGedhGtVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 60% (weak)

AMP-binding (2623..3034): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg20_18

Search NORINE for peptide: strict or relaxed

AMP-binding (454..843): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

ctg20_20

Search NORINE for peptide: strict or relaxed

AMP-binding (496..906): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (1570..1980): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (3088..3488): lys

NRPSPredictor2: lys

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: glu, gln
Single AA prediction:: lys

Stachelhaus prediction details:

Stachelhaus sequence:: DgeccGGVtK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 50% (weak)

c00076_3300011.. - Region 1 - NAGGN

Download region GenBank file

Location: 1 - 9,771 nt. (total: 9,771 nt) Show pHMM detection rules used

Region on contig edge.

NAGGN: ((TIGR03104 or cds(GATase_7 and Asn_synthase)) and TIGR03103 and (TIGR03106 or Peptidase_M42))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00093_3300011.. - Region 1 - NRPS-like

Download region GenBank file

Location: 150,010 - 192,778 nt. (total: 42,769 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 150009 - 192778:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg93_172

Search NORINE for peptide: strict or relaxed

AMP-binding (23..426): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DPRHfGfqaK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 60% (weak)