3300011689_1 - 3 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00010_3300011.. (original name was: 3300011689.a:Ga0121180_10121)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	NAGGN	1	9,920

c00034_3300011.. (original name was: 3300011689.a:Ga0121180_10027)

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	NRPS	33,241	112,518

c00089_3300011.. (original name was: 3300011689.a:Ga0121180_10005)

Region	Type	From	To	Most similar known cluster		Similarity
Region 89.1	NRPS-like	27,481	70,249

Region	Type	From	To	Similarity
Region 10.1	NAGGN	1	9,920
Region 34.1	NRPS	33,241	112,518
Region 89.1	NRPS-like	27,481	70,249

No secondary metabolite regions were found in these records:: c00001_3300011.. (original name was: 3300011689.a:Ga0121180_10151); c00002_3300011.. (original name was: 3300011689.a:Ga0121180_10136); c00003_3300011.. (original name was: 3300011689.a:Ga0121180_10050); c00004_3300011.. (original name was: 3300011689.a:Ga0121180_10233); c00005_3300011.. (original name was: 3300011689.a:Ga0121180_10089); c00006_3300011.. (original name was: 3300011689.a:Ga0121180_10061); c00007_3300011.. (original name was: 3300011689.a:Ga0121180_10259); c00008_3300011.. (original name was: 3300011689.a:Ga0121180_10139); c00009_3300011.. (original name was: 3300011689.a:Ga0121180_10202); c00011_3300011.. (original name was: 3300011689.a:Ga0121180_10137); c00012_3300011.. (original name was: 3300011689.a:Ga0121180_10193); c00013_3300011.. (original name was: 3300011689.a:Ga0121180_10057); c00014_3300011.. (original name was: 3300011689.a:Ga0121180_10118); c00015_3300011.. (original name was: 3300011689.a:Ga0121180_10208); c00016_3300011.. (original name was: 3300011689.a:Ga0121180_10015); c00017_3300011.. (original name was: 3300011689.a:Ga0121180_10162); c00018_3300011.. (original name was: 3300011689.a:Ga0121180_10106); c00019_3300011.. (original name was: 3300011689.a:Ga0121180_10213); c00020_3300011.. (original name was: 3300011689.a:Ga0121180_10016); c00021_3300011.. (original name was: 3300011689.a:Ga0121180_10099); c00022_3300011.. (original name was: 3300011689.a:Ga0121180_10093); c00023_3300011.. (original name was: 3300011689.a:Ga0121180_10048); c00024_3300011.. (original name was: 3300011689.a:Ga0121180_10242); c00025_3300011.. (original name was: 3300011689.a:Ga0121180_10038); c00026_3300011.. (original name was: 3300011689.a:Ga0121180_10044); c00027_3300011.. (original name was: 3300011689.a:Ga0121180_10070); c00028_3300011.. (original name was: 3300011689.a:Ga0121180_10141); c00029_3300011.. (original name was: 3300011689.a:Ga0121180_10055); c00030_3300011.. (original name was: 3300011689.a:Ga0121180_10071); c00031_3300011.. (original name was: 3300011689.a:Ga0121180_10138); c00032_3300011.. (original name was: 3300011689.a:Ga0121180_10102); c00033_3300011.. (original name was: 3300011689.a:Ga0121180_10042); c00035_3300011.. (original name was: 3300011689.a:Ga0121180_10103); c00036_3300011.. (original name was: 3300011689.a:Ga0121180_10305); c00037_3300011.. (original name was: 3300011689.a:Ga0121180_10111); c00038_3300011.. (original name was: 3300011689.a:Ga0121180_10039); c00039_3300011.. (original name was: 3300011689.a:Ga0121180_10036); c00040_3300011.. (original name was: 3300011689.a:Ga0121180_10108); c00041_3300011.. (original name was: 3300011689.a:Ga0121180_10334); c00042_3300011.. (original name was: 3300011689.a:Ga0121180_10209); c00043_3300011.. (original name was: 3300011689.a:Ga0121180_10124); c00044_3300011.. (original name was: 3300011689.a:Ga0121180_10012); c00045_3300011.. (original name was: 3300011689.a:Ga0121180_10011); c00046_3300011.. (original name was: 3300011689.a:Ga0121180_10069); c00047_3300011.. (original name was: 3300011689.a:Ga0121180_10090); c00048_3300011.. (original name was: 3300011689.a:Ga0121180_10180); c00049_3300011.. (original name was: 3300011689.a:Ga0121180_10026); c00050_3300011.. (original name was: 3300011689.a:Ga0121180_10034); c00051_3300011.. (original name was: 3300011689.a:Ga0121180_10003); c00052_3300011.. (original name was: 3300011689.a:Ga0121180_10134); c00053_3300011.. (original name was: 3300011689.a:Ga0121180_10062); c00054_3300011.. (original name was: 3300011689.a:Ga0121180_10049); c00055_3300011.. (original name was: 3300011689.a:Ga0121180_10035); c00056_3300011.. (original name was: 3300011689.a:Ga0121180_10051); c00057_3300011.. (original name was: 3300011689.a:Ga0121180_10109); c00058_3300011.. (original name was: 3300011689.a:Ga0121180_10131); c00059_3300011.. (original name was: 3300011689.a:Ga0121180_10060); c00060_3300011.. (original name was: 3300011689.a:Ga0121180_10152); c00061_3300011.. (original name was: 3300011689.a:Ga0121180_10367); c00062_3300011.. (original name was: 3300011689.a:Ga0121180_10188); c00063_3300011.. (original name was: 3300011689.a:Ga0121180_10064); c00064_3300011.. (original name was: 3300011689.a:Ga0121180_10158); c00065_3300011.. (original name was: 3300011689.a:Ga0121180_10097); c00066_3300011.. (original name was: 3300011689.a:Ga0121180_10679); c00067_3300011.. (original name was: 3300011689.a:Ga0121180_10147); c00068_3300011.. (original name was: 3300011689.a:Ga0121180_10083); c00069_3300011.. (original name was: 3300011689.a:Ga0121180_10223); c00070_3300011.. (original name was: 3300011689.a:Ga0121180_10068); c00071_3300011.. (original name was: 3300011689.a:Ga0121180_10041); c00072_3300011.. (original name was: 3300011689.a:Ga0121180_10123); c00073_3300011.. (original name was: 3300011689.a:Ga0121180_10125); c00074_3300011.. (original name was: 3300011689.a:Ga0121180_10129); c00075_3300011.. (original name was: 3300011689.a:Ga0121180_10024); c00076_3300011.. (original name was: 3300011689.a:Ga0121180_10155); c00077_3300011.. (original name was: 3300011689.a:Ga0121180_10117); c00078_3300011.. (original name was: 3300011689.a:Ga0121180_10343); c00079_3300011.. (original name was: 3300011689.a:Ga0121180_10022); c00080_3300011.. (original name was: 3300011689.a:Ga0121180_10114); c00081_3300011.. (original name was: 3300011689.a:Ga0121180_10010); c00082_3300011.. (original name was: 3300011689.a:Ga0121180_10077); c00083_3300011.. (original name was: 3300011689.a:Ga0121180_10076); c00084_3300011.. (original name was: 3300011689.a:Ga0121180_10126); c00085_3300011.. (original name was: 3300011689.a:Ga0121180_10101); c00086_3300011.. (original name was: 3300011689.a:Ga0121180_10013); c00087_3300011.. (original name was: 3300011689.a:Ga0121180_10054); c00088_3300011.. (original name was: 3300011689.a:Ga0121180_10088); c00090_3300011.. (original name was: 3300011689.a:Ga0121180_10226); c00091_3300011.. (original name was: 3300011689.a:Ga0121180_10045); c00092_3300011.. (original name was: 3300011689.a:Ga0121180_10066); c00093_3300011.. (original name was: 3300011689.a:Ga0121180_10104); c00094_3300011.. (original name was: 3300011689.a:Ga0121180_10014); c00095_3300011.. (original name was: 3300011689.a:Ga0121180_10133); c00096_3300011.. (original name was: 3300011689.a:Ga0121180_10028); c00097_3300011.. (original name was: 3300011689.a:Ga0121180_10215); c00098_3300011.. (original name was: 3300011689.a:Ga0121180_10096); c00099_3300011.. (original name was: 3300011689.a:Ga0121180_10052); c00100_3300011.. (original name was: 3300011689.a:Ga0121180_10046); c00101_3300011.. (original name was: 3300011689.a:Ga0121180_10144); c00102_3300011.. (original name was: 3300011689.a:Ga0121180_10004); c00103_3300011.. (original name was: 3300011689.a:Ga0121180_10143); c00104_3300011.. (original name was: 3300011689.a:Ga0121180_10169); c00105_3300011.. (original name was: 3300011689.a:Ga0121180_10019); c00106_3300011.. (original name was: 3300011689.a:Ga0121180_10072)

Compact view

c00010_3300011.. - Region 1 - NAGGN

Download region GenBank file

Location: 1 - 9,920 nt. (total: 9,920 nt) Show pHMM detection rules used

Region on contig edge.

NAGGN: ((TIGR03104 or cds(GATase_7 and Asn_synthase)) and TIGR03103 and (TIGR03106 or Peptidase_M42))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00034_3300011.. - Region 1 - NRPS

Download region GenBank file

Location: 33,241 - 112,518 nt. (total: 79,278 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 33240 - 112518:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - D-X - X) + (asp - X - thr) + (asp) + (thr - D-thr - lys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg34_46

Search NORINE for peptide: strict or relaxed

AMP-binding (496..906): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (1570..1980): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (3088..3488): lys

NRPSPredictor2: lys

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: glu, gln
Single AA prediction:: lys

Stachelhaus prediction details:

Stachelhaus sequence:: DgeccGGVtK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 50% (weak)

ctg34_48

Search NORINE for peptide: strict or relaxed

AMP-binding (454..843): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

ctg34_49

Search NORINE for peptide: strict or relaxed

AMP-binding (509..893): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

AMP-binding (1552..1961): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DGedhGtVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 60% (weak)

AMP-binding (2623..3034): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg34_63

Search NORINE for peptide: strict or relaxed

CAL_domain (41..482): pk

minowa: NH2

Prediction, score:

NH2: 160.4
Acetyl-CoA: 38.0
AHBA: 14.3
fatty_acid: 10.5
shikimic_acid: -2.8

AMP-binding (1131..1528): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFGRINK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (2182..2586): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAegiGAVMK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 70% (weak)

AMP-binding (3708..4114): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiWeLtadDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 50% (weak)

c00089_3300011.. - Region 1 - NRPS-like

Download region GenBank file

Location: 27,481 - 70,249 nt. (total: 42,769 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 27480 - 70249:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg89_45

Search NORINE for peptide: strict or relaxed

AMP-binding (23..426): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DPRHfGfqaK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 60% (weak)