3300012497_1 - 9 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00008_3300012.. (original name was: 3300012497.a:Ga0157319_1000015)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	arylpolyene	16,957	60,549

c00011_3300012.. (original name was: 3300012497.a:Ga0157319_1000009)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	terpene	84,974	106,745

c00012_3300012.. (original name was: 3300012497.a:Ga0157319_1000056)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	NRPS	1	9,385

c00020_3300012.. (original name was: 3300012497.a:Ga0157319_1000016)

Region	Type	From	To	Most similar known cluster		Similarity
Region 20.1	acyl_amino_acids	47,171	107,926

c00026_3300012.. (original name was: 3300012497.a:Ga0157319_1000006)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	bacteriocin	144,588	155,529

c00028_3300012.. (original name was: 3300012497.a:Ga0157319_1000004)

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	bacteriocin	261,014	271,862

c00041_3300012.. (original name was: 3300012497.a:Ga0157319_1000012)

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	acyl_amino_acids	1	58,847

c00047_3300012.. (original name was: 3300012497.a:Ga0157319_1000046)

Region	Type	From	To	Most similar known cluster		Similarity
Region 47.1	NRPS	1	19,426

c00053_3300012.. (original name was: 3300012497.a:Ga0157319_1000034)

Region	Type	From	To	Most similar known cluster		Similarity
Region 53.1	NRPS	1	37,904

Region	Type	From	To	Similarity
Region 8.1	arylpolyene	16,957	60,549
Region 11.1	terpene	84,974	106,745
Region 12.1	NRPS	1	9,385
Region 20.1	acyl_amino_acids	47,171	107,926
Region 26.1	bacteriocin	144,588	155,529
Region 28.1	bacteriocin	261,014	271,862
Region 41.1	acyl_amino_acids	1	58,847
Region 47.1	NRPS	1	19,426
Region 53.1	NRPS	1	37,904

No secondary metabolite regions were found in these records:: c00001_3300012.. (original name was: 3300012497.a:Ga0157319_1000028); c00002_3300012.. (original name was: 3300012497.a:Ga0157319_1000021); c00003_3300012.. (original name was: 3300012497.a:Ga0157319_1000079); c00004_3300012.. (original name was: 3300012497.a:Ga0157319_1000050); c00005_3300012.. (original name was: 3300012497.a:Ga0157319_1000036); c00006_3300012.. (original name was: 3300012497.a:Ga0157319_1000041); c00007_3300012.. (original name was: 3300012497.a:Ga0157319_1000011); c00009_3300012.. (original name was: 3300012497.a:Ga0157319_1000013); c00010_3300012.. (original name was: 3300012497.a:Ga0157319_1000017); c00013_3300012.. (original name was: 3300012497.a:Ga0157319_1000008); c00014_3300012.. (original name was: 3300012497.a:Ga0157319_1000003); c00015_3300012.. (original name was: 3300012497.a:Ga0157319_1000005); c00016_3300012.. (original name was: 3300012497.a:Ga0157319_1000052); c00017_3300012.. (original name was: 3300012497.a:Ga0157319_1000022); c00018_3300012.. (original name was: 3300012497.a:Ga0157319_1000045); c00019_3300012.. (original name was: 3300012497.a:Ga0157319_1000023); c00021_3300012.. (original name was: 3300012497.a:Ga0157319_1000039); c00022_3300012.. (original name was: 3300012497.a:Ga0157319_1000014); c00023_3300012.. (original name was: 3300012497.a:Ga0157319_1000037); c00024_3300012.. (original name was: 3300012497.a:Ga0157319_1000018); c00025_3300012.. (original name was: 3300012497.a:Ga0157319_1000053); c00027_3300012.. (original name was: 3300012497.a:Ga0157319_1000007); c00029_3300012.. (original name was: 3300012497.a:Ga0157319_1000051); c00030_3300012.. (original name was: 3300012497.a:Ga0157319_1000027); c00031_3300012.. (original name was: 3300012497.a:Ga0157319_1000020); c00032_3300012.. (original name was: 3300012497.a:Ga0157319_1000002); c00033_3300012.. (original name was: 3300012497.a:Ga0157319_1000049); c00034_3300012.. (original name was: 3300012497.a:Ga0157319_1000029); c00035_3300012.. (original name was: 3300012497.a:Ga0157319_1000126); c00036_3300012.. (original name was: 3300012497.a:Ga0157319_1000032); c00037_3300012.. (original name was: 3300012497.a:Ga0157319_1000043); c00038_3300012.. (original name was: 3300012497.a:Ga0157319_1000019); c00039_3300012.. (original name was: 3300012497.a:Ga0157319_1000038); c00040_3300012.. (original name was: 3300012497.a:Ga0157319_1000035); c00042_3300012.. (original name was: 3300012497.a:Ga0157319_1000048); c00043_3300012.. (original name was: 3300012497.a:Ga0157319_1000025); c00044_3300012.. (original name was: 3300012497.a:Ga0157319_1000031); c00045_3300012.. (original name was: 3300012497.a:Ga0157319_1000030); c00046_3300012.. (original name was: 3300012497.a:Ga0157319_1000024); c00048_3300012.. (original name was: 3300012497.a:Ga0157319_1000010); c00049_3300012.. (original name was: 3300012497.a:Ga0157319_1000033); c00050_3300012.. (original name was: 3300012497.a:Ga0157319_1000044); c00051_3300012.. (original name was: 3300012497.a:Ga0157319_1000026); c00052_3300012.. (original name was: 3300012497.a:Ga0157319_1000040); c00054_3300012.. (original name was: 3300012497.a:Ga0157319_1000042)

Compact view

c00008_3300012.. - Region 1 - arylpolyene

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Location: 16,957 - 60,549 nt. (total: 43,593 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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c00011_3300012.. - Region 1 - terpene

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Location: 84,974 - 106,745 nt. (total: 21,772 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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c00012_3300012.. - Region 1 - NRPS

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Location: 1 - 9,385 nt. (total: 9,385 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 9385:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg12_1

Search NORINE for peptide: strict or relaxed

AMP-binding (737..1137): X

NRPSPredictor2: glu, gln

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgEctgGITK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 60% (weak)

ctg12_2

Search NORINE for peptide: strict or relaxed

AMP-binding (555..956): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHVSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

c00020_3300012.. - Region 1 - acyl_amino_acids

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Location: 47,171 - 107,926 nt. (total: 60,756 nt) Show pHMM detection rules used

acyl_amino_acids: NasY

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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c00026_3300012.. - Region 1 - bacteriocin

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Location: 144,588 - 155,529 nt. (total: 10,942 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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c00028_3300012.. - Region 1 - bacteriocin

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Location: 261,014 - 271,862 nt. (total: 10,849 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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c00041_3300012.. - Region 1 - acyl_amino_acids

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Location: 1 - 58,847 nt. (total: 58,847 nt) Show pHMM detection rules used

Region on contig edge.

acyl_amino_acids: NasY

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

c00047_3300012.. - Region 1 - NRPS

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Location: 1 - 19,426 nt. (total: 19,426 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 19426:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser - D-X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg47_1

Search NORINE for peptide: strict or relaxed

AMP-binding (12..276): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHVSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (959..1364): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgEavgGITK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 60% (weak)

c00053_3300012.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 37,904 nt. (total: 37,904 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 37904:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (asp) + (asp - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg53_1

Search NORINE for peptide: strict or relaxed

AMP-binding (508..912): asp

NRPSPredictor2: asp

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

AMP-binding (1675..2078): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DashIGSItK
Nearest Stachelhaus code:: orn
Stachelhaus code match:: 60% (weak)

AMP-binding (2745..3146): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHVSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

ctg53_2

Search NORINE for peptide: strict or relaxed

AMP-binding (510..916): asp

NRPSPredictor2: asp

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

ctg53_3

CAL_domain (82..528): pk

minowa: NH2

Prediction, score:

NH2: 175.5
Acetyl-CoA: 13.2
AHBA: 5.6
shikimic_acid: -2.1
fatty_acid: -3.1