3300013101_17 - 5 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00023_3300013.. (original name was: 3300013101.a:Ga0164313_10000987)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	NRPS,betalactone	1	24,412

c00051_3300013.. (original name was: 3300013101.a:Ga0164313_10000693)

Region	Type	From	To	Most similar known cluster		Similarity
Region 51.1	NRPS-like	5,876	28,010

c00126_3300013.. (original name was: 3300013101.a:Ga0164313_10000055)

Region	Type	From	To	Most similar known cluster		Similarity
Region 126.1	NRPS	41,120	65,364

c00174_3300013.. (original name was: 3300013101.a:Ga0164313_10000223)

Region	Type	From	To	Most similar known cluster		Similarity
Region 174.1	NRPS,T1PKS	1	42,356

c00189_3300013.. (original name was: 3300013101.a:Ga0164313_10002263)

Region	Type	From	To	Most similar known cluster		Similarity
Region 189.1	phosphonate	1	17,270

Region	Type	From	To	Similarity
Region 23.1	NRPS,betalactone	1	24,412
Region 51.1	NRPS-like	5,876	28,010
Region 126.1	NRPS	41,120	65,364
Region 174.1	NRPS,T1PKS	1	42,356
Region 189.1	phosphonate	1	17,270

No secondary metabolite regions were found in these records:: c00001_3300013.. (original name was: 3300013101.a:Ga0164313_10020744); c00002_3300013.. (original name was: 3300013101.a:Ga0164313_10000714); c00003_3300013.. (original name was: 3300013101.a:Ga0164313_10064949); c00004_3300013.. (original name was: 3300013101.a:Ga0164313_10052619); c00005_3300013.. (original name was: 3300013101.a:Ga0164313_10018386); c00006_3300013.. (original name was: 3300013101.a:Ga0164313_10004803); c00007_3300013.. (original name was: 3300013101.a:Ga0164313_10051932); c00008_3300013.. (original name was: 3300013101.a:Ga0164313_10001798); c00009_3300013.. (original name was: 3300013101.a:Ga0164313_10000025); c00010_3300013.. (original name was: 3300013101.a:Ga0164313_10019147); c00011_3300013.. (original name was: 3300013101.a:Ga0164313_10000396); c00012_3300013.. (original name was: 3300013101.a:Ga0164313_10006705); c00013_3300013.. (original name was: 3300013101.a:Ga0164313_10006572); c00014_3300013.. (original name was: 3300013101.a:Ga0164313_10036366); c00015_3300013.. (original name was: 3300013101.a:Ga0164313_10041292); c00016_3300013.. (original name was: 3300013101.a:Ga0164313_10003284); c00017_3300013.. (original name was: 3300013101.a:Ga0164313_10001772); c00018_3300013.. (original name was: 3300013101.a:Ga0164313_10000385); c00019_3300013.. (original name was: 3300013101.a:Ga0164313_10007941); c00020_3300013.. (original name was: 3300013101.a:Ga0164313_10003157); c00021_3300013.. (original name was: 3300013101.a:Ga0164313_10002464); c00022_3300013.. (original name was: 3300013101.a:Ga0164313_10001217); c00024_3300013.. (original name was: 3300013101.a:Ga0164313_10060926); c00025_3300013.. (original name was: 3300013101.a:Ga0164313_10005500); c00026_3300013.. (original name was: 3300013101.a:Ga0164313_10003799); c00027_3300013.. (original name was: 3300013101.a:Ga0164313_10013200); c00028_3300013.. (original name was: 3300013101.a:Ga0164313_10004316); c00029_3300013.. (original name was: 3300013101.a:Ga0164313_10023638); c00030_3300013.. (original name was: 3300013101.a:Ga0164313_10000906); c00031_3300013.. (original name was: 3300013101.a:Ga0164313_10007558); c00032_3300013.. (original name was: 3300013101.a:Ga0164313_10000537); c00033_3300013.. (original name was: 3300013101.a:Ga0164313_10000069); c00034_3300013.. (original name was: 3300013101.a:Ga0164313_10000026); c00035_3300013.. (original name was: 3300013101.a:Ga0164313_10003538); c00036_3300013.. (original name was: 3300013101.a:Ga0164313_10001612); c00037_3300013.. (original name was: 3300013101.a:Ga0164313_10052325); c00038_3300013.. (original name was: 3300013101.a:Ga0164313_10000155); c00039_3300013.. (original name was: 3300013101.a:Ga0164313_10011165); c00040_3300013.. (original name was: 3300013101.a:Ga0164313_10050729); c00041_3300013.. (original name was: 3300013101.a:Ga0164313_10000970); c00042_3300013.. (original name was: 3300013101.a:Ga0164313_10002163); c00043_3300013.. (original name was: 3300013101.a:Ga0164313_10000609); c00044_3300013.. (original name was: 3300013101.a:Ga0164313_10018439); c00045_3300013.. (original name was: 3300013101.a:Ga0164313_10001996); c00046_3300013.. (original name was: 3300013101.a:Ga0164313_10022264); c00047_3300013.. (original name was: 3300013101.a:Ga0164313_10001000); c00048_3300013.. (original name was: 3300013101.a:Ga0164313_10001494); c00049_3300013.. (original name was: 3300013101.a:Ga0164313_10003914); c00050_3300013.. (original name was: 3300013101.a:Ga0164313_10015334); c00052_3300013.. (original name was: 3300013101.a:Ga0164313_10031798); c00053_3300013.. (original name was: 3300013101.a:Ga0164313_10000559); c00054_3300013.. (original name was: 3300013101.a:Ga0164313_10005405); c00055_3300013.. (original name was: 3300013101.a:Ga0164313_10002957); c00056_3300013.. (original name was: 3300013101.a:Ga0164313_10001916); c00057_3300013.. (original name was: 3300013101.a:Ga0164313_10013182); c00058_3300013.. (original name was: 3300013101.a:Ga0164313_10013932); c00059_3300013.. (original name was: 3300013101.a:Ga0164313_10004235); c00060_3300013.. (original name was: 3300013101.a:Ga0164313_10013374); c00061_3300013.. (original name was: 3300013101.a:Ga0164313_10004234); c00062_3300013.. (original name was: 3300013101.a:Ga0164313_10018559); c00063_3300013.. (original name was: 3300013101.a:Ga0164313_10053360); c00064_3300013.. (original name was: 3300013101.a:Ga0164313_10001210); c00065_3300013.. (original name was: 3300013101.a:Ga0164313_10009703); c00066_3300013.. (original name was: 3300013101.a:Ga0164313_10001765); c00067_3300013.. (original name was: 3300013101.a:Ga0164313_10000900); c00068_3300013.. (original name was: 3300013101.a:Ga0164313_10000450); c00069_3300013.. (original name was: 3300013101.a:Ga0164313_10010861); c00070_3300013.. (original name was: 3300013101.a:Ga0164313_10002776); c00071_3300013.. (original name was: 3300013101.a:Ga0164313_10019739); c00072_3300013.. (original name was: 3300013101.a:Ga0164313_10017541); c00073_3300013.. (original name was: 3300013101.a:Ga0164313_10007695); c00074_3300013.. (original name was: 3300013101.a:Ga0164313_10000134); c00075_3300013.. (original name was: 3300013101.a:Ga0164313_10002179); c00076_3300013.. (original name was: 3300013101.a:Ga0164313_10010956); c00077_3300013.. (original name was: 3300013101.a:Ga0164313_10020695); c00078_3300013.. (original name was: 3300013101.a:Ga0164313_10019330); c00079_3300013.. (original name was: 3300013101.a:Ga0164313_10027114); c00080_3300013.. (original name was: 3300013101.a:Ga0164313_10000090); c00081_3300013.. (original name was: 3300013101.a:Ga0164313_10003670); c00082_3300013.. (original name was: 3300013101.a:Ga0164313_10000039); c00083_3300013.. (original name was: 3300013101.a:Ga0164313_10000682); c00084_3300013.. (original name was: 3300013101.a:Ga0164313_10060239); c00085_3300013.. (original name was: 3300013101.a:Ga0164313_10000320); c00086_3300013.. (original name was: 3300013101.a:Ga0164313_10012605); c00087_3300013.. (original name was: 3300013101.a:Ga0164313_10012145); c00088_3300013.. (original name was: 3300013101.a:Ga0164313_10002305); c00089_3300013.. (original name was: 3300013101.a:Ga0164313_10015626); c00090_3300013.. (original name was: 3300013101.a:Ga0164313_10002023); c00091_3300013.. (original name was: 3300013101.a:Ga0164313_10000736); c00092_3300013.. (original name was: 3300013101.a:Ga0164313_10000409); c00093_3300013.. (original name was: 3300013101.a:Ga0164313_10001204); c00094_3300013.. (original name was: 3300013101.a:Ga0164313_10012068); c00095_3300013.. (original name was: 3300013101.a:Ga0164313_10067569); c00096_3300013.. (original name was: 3300013101.a:Ga0164313_10000757); c00097_3300013.. (original name was: 3300013101.a:Ga0164313_10003179); c00098_3300013.. (original name was: 3300013101.a:Ga0164313_10029548); c00099_3300013.. (original name was: 3300013101.a:Ga0164313_10044325); c00100_3300013.. (original name was: 3300013101.a:Ga0164313_10024137); c00101_3300013.. (original name was: 3300013101.a:Ga0164313_10040929); c00102_3300013.. (original name was: 3300013101.a:Ga0164313_10031316); c00103_3300013.. (original name was: 3300013101.a:Ga0164313_10008423); c00104_3300013.. (original name was: 3300013101.a:Ga0164313_10003760); c00105_3300013.. (original name was: 3300013101.a:Ga0164313_10006071); c00106_3300013.. (original name was: 3300013101.a:Ga0164313_10013160); c00107_3300013.. (original name was: 3300013101.a:Ga0164313_10024182); c00108_3300013.. (original name was: 3300013101.a:Ga0164313_10000028); c00109_3300013.. (original name was: 3300013101.a:Ga0164313_10000260); c00110_3300013.. (original name was: 3300013101.a:Ga0164313_10004068); c00111_3300013.. (original name was: 3300013101.a:Ga0164313_10013014); c00112_3300013.. (original name was: 3300013101.a:Ga0164313_10011301); c00113_3300013.. (original name was: 3300013101.a:Ga0164313_10001641); c00114_3300013.. (original name was: 3300013101.a:Ga0164313_10000105); c00115_3300013.. (original name was: 3300013101.a:Ga0164313_10006866); c00116_3300013.. (original name was: 3300013101.a:Ga0164313_10010702); c00117_3300013.. (original name was: 3300013101.a:Ga0164313_10061242); c00118_3300013.. (original name was: 3300013101.a:Ga0164313_10001987); c00119_3300013.. (original name was: 3300013101.a:Ga0164313_10005954); c00120_3300013.. (original name was: 3300013101.a:Ga0164313_10052564); c00121_3300013.. (original name was: 3300013101.a:Ga0164313_10004566); c00122_3300013.. (original name was: 3300013101.a:Ga0164313_10023548); c00123_3300013.. (original name was: 3300013101.a:Ga0164313_10012380); c00124_3300013.. (original name was: 3300013101.a:Ga0164313_10007731); c00125_3300013.. (original name was: 3300013101.a:Ga0164313_10026938); c00127_3300013.. (original name was: 3300013101.a:Ga0164313_10021460); c00128_3300013.. (original name was: 3300013101.a:Ga0164313_10002635); c00129_3300013.. (original name was: 3300013101.a:Ga0164313_10009099); c00130_3300013.. (original name was: 3300013101.a:Ga0164313_10011681); c00131_3300013.. (original name was: 3300013101.a:Ga0164313_10005666); c00132_3300013.. (original name was: 3300013101.a:Ga0164313_10007395); c00133_3300013.. (original name was: 3300013101.a:Ga0164313_10000037); c00134_3300013.. (original name was: 3300013101.a:Ga0164313_10002371); c00135_3300013.. (original name was: 3300013101.a:Ga0164313_10000087); c00136_3300013.. (original name was: 3300013101.a:Ga0164313_10013641); c00137_3300013.. (original name was: 3300013101.a:Ga0164313_10026935); c00138_3300013.. (original name was: 3300013101.a:Ga0164313_10000743); c00139_3300013.. (original name was: 3300013101.a:Ga0164313_10001356); c00140_3300013.. (original name was: 3300013101.a:Ga0164313_10016553); c00141_3300013.. (original name was: 3300013101.a:Ga0164313_10022885); c00142_3300013.. (original name was: 3300013101.a:Ga0164313_10007230); c00143_3300013.. (original name was: 3300013101.a:Ga0164313_10007287); c00144_3300013.. (original name was: 3300013101.a:Ga0164313_10004611); c00145_3300013.. (original name was: 3300013101.a:Ga0164313_10004211); c00146_3300013.. (original name was: 3300013101.a:Ga0164313_10002068); c00147_3300013.. (original name was: 3300013101.a:Ga0164313_10002090); c00148_3300013.. (original name was: 3300013101.a:Ga0164313_10000841); c00149_3300013.. (original name was: 3300013101.a:Ga0164313_10000073); c00150_3300013.. (original name was: 3300013101.a:Ga0164313_10004276); c00151_3300013.. (original name was: 3300013101.a:Ga0164313_10021629); c00152_3300013.. (original name was: 3300013101.a:Ga0164313_10045666); c00153_3300013.. (original name was: 3300013101.a:Ga0164313_10002160); c00154_3300013.. (original name was: 3300013101.a:Ga0164313_10007409); c00155_3300013.. (original name was: 3300013101.a:Ga0164313_10002640); c00156_3300013.. (original name was: 3300013101.a:Ga0164313_10000338); c00157_3300013.. (original name was: 3300013101.a:Ga0164313_10064875); c00158_3300013.. (original name was: 3300013101.a:Ga0164313_10002703); c00159_3300013.. (original name was: 3300013101.a:Ga0164313_10025138); c00160_3300013.. (original name was: 3300013101.a:Ga0164313_10004934); c00161_3300013.. (original name was: 3300013101.a:Ga0164313_10012557); c00162_3300013.. (original name was: 3300013101.a:Ga0164313_10053457); c00163_3300013.. (original name was: 3300013101.a:Ga0164313_10001381); c00164_3300013.. (original name was: 3300013101.a:Ga0164313_10000261); c00165_3300013.. (original name was: 3300013101.a:Ga0164313_10061164); c00166_3300013.. (original name was: 3300013101.a:Ga0164313_10000172); c00167_3300013.. (original name was: 3300013101.a:Ga0164313_10001278); c00168_3300013.. (original name was: 3300013101.a:Ga0164313_10001561); c00169_3300013.. (original name was: 3300013101.a:Ga0164313_10000417); c00170_3300013.. (original name was: 3300013101.a:Ga0164313_10000305); c00171_3300013.. (original name was: 3300013101.a:Ga0164313_10007628); c00172_3300013.. (original name was: 3300013101.a:Ga0164313_10001326); c00173_3300013.. (original name was: 3300013101.a:Ga0164313_10009122); c00175_3300013.. (original name was: 3300013101.a:Ga0164313_10015360); c00176_3300013.. (original name was: 3300013101.a:Ga0164313_10016719); c00177_3300013.. (original name was: 3300013101.a:Ga0164313_10000307); c00178_3300013.. (original name was: 3300013101.a:Ga0164313_10002558); c00179_3300013.. (original name was: 3300013101.a:Ga0164313_10010155); c00180_3300013.. (original name was: 3300013101.a:Ga0164313_10000168); c00181_3300013.. (original name was: 3300013101.a:Ga0164313_10030337); c00182_3300013.. (original name was: 3300013101.a:Ga0164313_10006324); c00183_3300013.. (original name was: 3300013101.a:Ga0164313_10006349); c00184_3300013.. (original name was: 3300013101.a:Ga0164313_10000252); c00185_3300013.. (original name was: 3300013101.a:Ga0164313_10000593); c00186_3300013.. (original name was: 3300013101.a:Ga0164313_10001478); c00187_3300013.. (original name was: 3300013101.a:Ga0164313_10007634); c00188_3300013.. (original name was: 3300013101.a:Ga0164313_10000099); c00190_3300013.. (original name was: 3300013101.a:Ga0164313_10001764); c00191_3300013.. (original name was: 3300013101.a:Ga0164313_10003650); c00192_3300013.. (original name was: 3300013101.a:Ga0164313_10000219); c00193_3300013.. (original name was: 3300013101.a:Ga0164313_10002523); c00194_3300013.. (original name was: 3300013101.a:Ga0164313_10015349); c00195_3300013.. (original name was: 3300013101.a:Ga0164313_10019986); c00196_3300013.. (original name was: 3300013101.a:Ga0164313_10000927); c00197_3300013.. (original name was: 3300013101.a:Ga0164313_10017158); c00198_3300013.. (original name was: 3300013101.a:Ga0164313_10027231); c00199_3300013.. (original name was: 3300013101.a:Ga0164313_10003812); c00200_3300013.. (original name was: 3300013101.a:Ga0164313_10003568); c00201_3300013.. (original name was: 3300013101.a:Ga0164313_10005233); c00202_3300013.. (original name was: 3300013101.a:Ga0164313_10002420); c00203_3300013.. (original name was: 3300013101.a:Ga0164313_10013419); c00204_3300013.. (original name was: 3300013101.a:Ga0164313_10000405); c00205_3300013.. (original name was: 3300013101.a:Ga0164313_10005133); c00206_3300013.. (original name was: 3300013101.a:Ga0164313_10013873); c00207_3300013.. (original name was: 3300013101.a:Ga0164313_10009819); c00208_3300013.. (original name was: 3300013101.a:Ga0164313_10001786); c00209_3300013.. (original name was: 3300013101.a:Ga0164313_10002288); c00210_3300013.. (original name was: 3300013101.a:Ga0164313_10036330); c00211_3300013.. (original name was: 3300013101.a:Ga0164313_10000110); c00212_3300013.. (original name was: 3300013101.a:Ga0164313_10000386); c00213_3300013.. (original name was: 3300013101.a:Ga0164313_10000274); c00214_3300013.. (original name was: 3300013101.a:Ga0164313_10000489); c00215_3300013.. (original name was: 3300013101.a:Ga0164313_10000281); c00216_3300013.. (original name was: 3300013101.a:Ga0164313_10001202); c00217_3300013.. (original name was: 3300013101.a:Ga0164313_10031190); c00218_3300013.. (original name was: 3300013101.a:Ga0164313_10000947); c00219_3300013.. (original name was: 3300013101.a:Ga0164313_10005816); c00220_3300013.. (original name was: 3300013101.a:Ga0164313_10000816); c00221_3300013.. (original name was: 3300013101.a:Ga0164313_10009224); c00222_3300013.. (original name was: 3300013101.a:Ga0164313_10054987); c00223_3300013.. (original name was: 3300013101.a:Ga0164313_10003087); c00224_3300013.. (original name was: 3300013101.a:Ga0164313_10004164); c00225_3300013.. (original name was: 3300013101.a:Ga0164313_10000562); c00226_3300013.. (original name was: 3300013101.a:Ga0164313_10001185); c00227_3300013.. (original name was: 3300013101.a:Ga0164313_10003272); c00228_3300013.. (original name was: 3300013101.a:Ga0164313_10042162); c00229_3300013.. (original name was: 3300013101.a:Ga0164313_10000564); c00230_3300013.. (original name was: 3300013101.a:Ga0164313_10049705); c00231_3300013.. (original name was: 3300013101.a:Ga0164313_10001298); c00232_3300013.. (original name was: 3300013101.a:Ga0164313_10000415); c00233_3300013.. (original name was: 3300013101.a:Ga0164313_10001585); c00234_3300013.. (original name was: 3300013101.a:Ga0164313_10053106); c00235_3300013.. (original name was: 3300013101.a:Ga0164313_10001592); c00236_3300013.. (original name was: 3300013101.a:Ga0164313_10002958); c00237_3300013.. (original name was: 3300013101.a:Ga0164313_10003742); c00238_3300013.. (original name was: 3300013101.a:Ga0164313_10012065); c00239_3300013.. (original name was: 3300013101.a:Ga0164313_10019152); c00240_3300013.. (original name was: 3300013101.a:Ga0164313_10027168); c00241_3300013.. (original name was: 3300013101.a:Ga0164313_10000879); c00242_3300013.. (original name was: 3300013101.a:Ga0164313_10003049); c00243_3300013.. (original name was: 3300013101.a:Ga0164313_10000501); c00244_3300013.. (original name was: 3300013101.a:Ga0164313_10066194); c00245_3300013.. (original name was: 3300013101.a:Ga0164313_10001762); c00246_3300013.. (original name was: 3300013101.a:Ga0164313_10006519); c00247_3300013.. (original name was: 3300013101.a:Ga0164313_10003824); c00248_3300013.. (original name was: 3300013101.a:Ga0164313_10020595); c00249_3300013.. (original name was: 3300013101.a:Ga0164313_10000630); c00250_3300013.. (original name was: 3300013101.a:Ga0164313_10001048); c00251_3300013.. (original name was: 3300013101.a:Ga0164313_10017712); c00252_3300013.. (original name was: 3300013101.a:Ga0164313_10030872)

Compact view

c00023_3300013.. - Region 1 - NRPS,betalactone

Download region GenBank file

Location: 1 - 24,412 nt. (total: 24,412 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 24412:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - val)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg23_7

Search NORINE for peptide: strict or relaxed

AMP-binding (0..350): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgLHvGLLaK
Nearest Stachelhaus code:: hpg
Stachelhaus code match:: 70% (weak)

AMP-binding (1356..1754): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWlGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

c00051_3300013.. - Region 1 - NRPS-like

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Location: 5,876 - 28,010 nt. (total: 22,135 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 5875 - 28010:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg51_24

Search NORINE for peptide: strict or relaxed

AMP-binding (71..489): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMvWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 90% (moderate)

c00126_3300013.. - Region 1 - NRPS

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Location: 41,120 - 65,364 nt. (total: 24,245 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 41119 - 65364:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg126_45

Search NORINE for peptide: strict or relaxed

AMP-binding (7..217): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: --RtqGstiK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 30% (weak)

c00174_3300013.. - Region 1 - NRPS,T1PKS

Download region GenBank file

Location: 1 - 42,356 nt. (total: 42,356 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 42356:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pro - thr) + (D-asp - ile - ohmal) + (gly)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg174_1

Search NORINE for peptide: strict or relaxed

AMP-binding (510..910): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMvWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 90% (moderate)

ctg174_2

Search NORINE for peptide: strict or relaxed

AMP-binding (534..942): asp

NRPSPredictor2: asp

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKaGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 90% (moderate)

AMP-binding (2066..2471): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGVTyK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 90% (moderate)

PKS_AT (3203..3502): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 79.2%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 172.9
inactive: 91.8
Methoxymalonyl-CoA: 71.2
Methylmalonyl-CoA: 54.1
Propionyl-CoA: 43.7
2-Methylbutyryl-CoA: 25.2
CHC-CoA: 24.7
Isobutyryl-CoA: 21.8
fatty_acid: 21.0
Ethylmalonyl-CoA: 17.6
Benzoyl-CoA: 12.2
Acetyl-CoA: 9.4
trans-1,2-CPDA: 0.0
3-Methylbutyryl-CoA: 0.0

ctg174_3

Search NORINE for peptide: strict or relaxed

AMP-binding (482..893): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFvAqVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 80% (moderate)

AMP-binding (1553..1961): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWSiGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 90% (moderate)