3300013296_33 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00002_3300013.. (original name was: 3300013296.a:Ga0157374_10000041)

Region	Type	From	To	Most similar known cluster		Similarity
Region 2.1	NRPS,transAT-PKS-like	50,927	105,627

c00024_3300013.. (original name was: 3300013296.a:Ga0157374_10000160)

Region	Type	From	To	Most similar known cluster		Similarity
Region 24.1	terpene	34,598	55,494

c00035_3300013.. (original name was: 3300013296.a:Ga0157374_10000252)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	terpene	37,890	49,560

c00037_3300013.. (original name was: 3300013296.a:Ga0157374_10000028)

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	ladderane	117,186	158,382

c00041_3300013.. (original name was: 3300013296.a:Ga0157374_10000030)

Region	Type	From	To	Most similar known cluster		Similarity
Region 41.1	terpene	1	19,844

c00049_3300013.. (original name was: 3300013296.a:Ga0157374_10000057)

Region	Type	From	To	Most similar known cluster		Similarity
Region 49.1	bacteriocin	97,938	108,801

Region	Type	From	To	Similarity
Region 2.1	NRPS,transAT-PKS-like	50,927	105,627
Region 24.1	terpene	34,598	55,494
Region 35.1	terpene	37,890	49,560
Region 37.1	ladderane	117,186	158,382
Region 41.1	terpene	1	19,844
Region 49.1	bacteriocin	97,938	108,801

No secondary metabolite regions were found in these records:: c00001_3300013.. (original name was: 3300013296.a:Ga0157374_10001989); c00003_3300013.. (original name was: 3300013296.a:Ga0157374_10034542); c00004_3300013.. (original name was: 3300013296.a:Ga0157374_10001669); c00005_3300013.. (original name was: 3300013296.a:Ga0157374_10001335); c00006_3300013.. (original name was: 3300013296.a:Ga0157374_10009926); c00007_3300013.. (original name was: 3300013296.a:Ga0157374_10000036); c00008_3300013.. (original name was: 3300013296.a:Ga0157374_10000499); c00009_3300013.. (original name was: 3300013296.a:Ga0157374_10000179); c00010_3300013.. (original name was: 3300013296.a:Ga0157374_10000273); c00011_3300013.. (original name was: 3300013296.a:Ga0157374_10007464); c00012_3300013.. (original name was: 3300013296.a:Ga0157374_10000124); c00013_3300013.. (original name was: 3300013296.a:Ga0157374_10000415); c00014_3300013.. (original name was: 3300013296.a:Ga0157374_10000803); c00015_3300013.. (original name was: 3300013296.a:Ga0157374_10062555); c00016_3300013.. (original name was: 3300013296.a:Ga0157374_10014783); c00017_3300013.. (original name was: 3300013296.a:Ga0157374_10002468); c00018_3300013.. (original name was: 3300013296.a:Ga0157374_10000043); c00019_3300013.. (original name was: 3300013296.a:Ga0157374_10000334); c00020_3300013.. (original name was: 3300013296.a:Ga0157374_10000209); c00021_3300013.. (original name was: 3300013296.a:Ga0157374_10048678); c00022_3300013.. (original name was: 3300013296.a:Ga0157374_10000510); c00023_3300013.. (original name was: 3300013296.a:Ga0157374_10062009); c00025_3300013.. (original name was: 3300013296.a:Ga0157374_10000066); c00026_3300013.. (original name was: 3300013296.a:Ga0157374_10021169); c00027_3300013.. (original name was: 3300013296.a:Ga0157374_10002750); c00028_3300013.. (original name was: 3300013296.a:Ga0157374_10034252); c00029_3300013.. (original name was: 3300013296.a:Ga0157374_10019632); c00030_3300013.. (original name was: 3300013296.a:Ga0157374_10000080); c00031_3300013.. (original name was: 3300013296.a:Ga0157374_10000045); c00032_3300013.. (original name was: 3300013296.a:Ga0157374_10000046); c00033_3300013.. (original name was: 3300013296.a:Ga0157374_10000093); c00034_3300013.. (original name was: 3300013296.a:Ga0157374_10000931); c00036_3300013.. (original name was: 3300013296.a:Ga0157374_10000060); c00038_3300013.. (original name was: 3300013296.a:Ga0157374_10000119); c00039_3300013.. (original name was: 3300013296.a:Ga0157374_10000216); c00040_3300013.. (original name was: 3300013296.a:Ga0157374_10000404); c00042_3300013.. (original name was: 3300013296.a:Ga0157374_10004213); c00043_3300013.. (original name was: 3300013296.a:Ga0157374_10001957); c00044_3300013.. (original name was: 3300013296.a:Ga0157374_10000071); c00045_3300013.. (original name was: 3300013296.a:Ga0157374_10045464); c00046_3300013.. (original name was: 3300013296.a:Ga0157374_10011626); c00047_3300013.. (original name was: 3300013296.a:Ga0157374_10010074); c00048_3300013.. (original name was: 3300013296.a:Ga0157374_10000047); c00050_3300013.. (original name was: 3300013296.a:Ga0157374_10000054); c00051_3300013.. (original name was: 3300013296.a:Ga0157374_10000151); c00052_3300013.. (original name was: 3300013296.a:Ga0157374_10000068); c00053_3300013.. (original name was: 3300013296.a:Ga0157374_10000165); c00054_3300013.. (original name was: 3300013296.a:Ga0157374_10005015); c00055_3300013.. (original name was: 3300013296.a:Ga0157374_10003463); c00056_3300013.. (original name was: 3300013296.a:Ga0157374_10000167); c00057_3300013.. (original name was: 3300013296.a:Ga0157374_10000023); c00058_3300013.. (original name was: 3300013296.a:Ga0157374_10000120); c00059_3300013.. (original name was: 3300013296.a:Ga0157374_10000026); c00060_3300013.. (original name was: 3300013296.a:Ga0157374_10000059)

Compact view

c00002_3300013.. - Region 1 - NRPS,transAT-PKS-like

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Location: 50,927 - 105,627 nt. (total: 54,701 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
transAT-PKS-like: cds(ATd and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS) and not PKS_AT)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 50926 - 105627:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pro) + (ser) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg2_66

Search NORINE for peptide: strict or relaxed

AMP-binding (16..411): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFfAHVIK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 90% (moderate)

ctg2_67

Search NORINE for peptide: strict or relaxed

AMP-binding (2053..2447): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLVDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

ctg2_68

Search NORINE for peptide: strict or relaxed

AMP-binding (485..855): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAFlLGaViK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 70% (weak)

c00024_3300013.. - Region 1 - terpene

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Location: 34,598 - 55,494 nt. (total: 20,897 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00035_3300013.. - Region 1 - terpene

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Location: 37,890 - 49,560 nt. (total: 11,671 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00037_3300013.. - Region 1 - ladderane

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Location: 117,186 - 158,382 nt. (total: 41,197 nt) Show pHMM detection rules used

ladderane: ladderane

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00041_3300013.. - Region 1 - terpene

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Location: 1 - 19,844 nt. (total: 19,844 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00049_3300013.. - Region 1 - bacteriocin

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Location: 97,938 - 108,801 nt. (total: 10,864 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

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Gene details

Select a gene to view the details available for it