3300014623_1 - 13 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00001_3300014.. (original name was: 3300014623.a:Ga0121352_10235)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	NRPS	1	4,019

c00003_3300014.. (original name was: 3300014623.a:Ga0121352_10168)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	NRPS	1	11,709

c00022_3300014.. (original name was: 3300014623.a:Ga0121352_10008)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	bacteriocin	63,850	74,695

c00025_3300014.. (original name was: 3300014623.a:Ga0121352_10006)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	NRPS	1	24,785

c00026_3300014.. (original name was: 3300014623.a:Ga0121352_10005)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	bacteriocin	118,822	129,697

c00029_3300014.. (original name was: 3300014623.a:Ga0121352_10002)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	NRPS	142,160	192,227

c00030_3300014.. (original name was: 3300014623.a:Ga0121352_10001)

Region	Type	From	To	Most similar known cluster		Similarity
Region 30.1	NRPS	316,845	369,361

c00034_3300014.. (original name was: 3300014623.a:Ga0121352_10012)

Region	Type	From	To	Most similar known cluster		Similarity
Region 34.1	NAGGN	44,976	59,783
Region 34.2	NRPS	92,918	145,814

c00035_3300014.. (original name was: 3300014623.a:Ga0121352_10060)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	NRPS-like	23,410	49,796

c00040_3300014.. (original name was: 3300014623.a:Ga0121352_10018)

Region	Type	From	To	Most similar known cluster		Similarity
Region 40.1	arylpolyene	80,722	124,297

c00042_3300014.. (original name was: 3300014623.a:Ga0121352_10114)

Region	Type	From	To	Most similar known cluster		Similarity
Region 42.1	NRPS	1	25,249

c00043_3300014.. (original name was: 3300014623.a:Ga0121352_10020)

Region	Type	From	To	Most similar known cluster		Similarity
Region 43.1	betalactone	1,903	30,251

Region	Type	From	To	Similarity
Region 1.1	NRPS	1	4,019
Region 3.1	NRPS	1	11,709
Region 22.1	bacteriocin	63,850	74,695
Region 25.1	NRPS	1	24,785
Region 26.1	bacteriocin	118,822	129,697
Region 29.1	NRPS	142,160	192,227
Region 30.1	NRPS	316,845	369,361
Region 34.1	NAGGN	44,976	59,783
Region 34.2	NRPS	92,918	145,814
Region 35.1	NRPS-like	23,410	49,796
Region 40.1	arylpolyene	80,722	124,297
Region 42.1	NRPS	1	25,249
Region 43.1	betalactone	1,903	30,251

No secondary metabolite regions were found in these records:: c00002_3300014.. (original name was: 3300014623.a:Ga0121352_10213); c00004_3300014.. (original name was: 3300014623.a:Ga0121352_10133); c00005_3300014.. (original name was: 3300014623.a:Ga0121352_10086); c00006_3300014.. (original name was: 3300014623.a:Ga0121352_10044); c00007_3300014.. (original name was: 3300014623.a:Ga0121352_10043); c00008_3300014.. (original name was: 3300014623.a:Ga0121352_10034); c00009_3300014.. (original name was: 3300014623.a:Ga0121352_10032); c00010_3300014.. (original name was: 3300014623.a:Ga0121352_10031); c00011_3300014.. (original name was: 3300014623.a:Ga0121352_10030); c00012_3300014.. (original name was: 3300014623.a:Ga0121352_10076); c00013_3300014.. (original name was: 3300014623.a:Ga0121352_10029); c00014_3300014.. (original name was: 3300014623.a:Ga0121352_10169); c00015_3300014.. (original name was: 3300014623.a:Ga0121352_10028); c00016_3300014.. (original name was: 3300014623.a:Ga0121352_10026); c00017_3300014.. (original name was: 3300014623.a:Ga0121352_10198); c00018_3300014.. (original name was: 3300014623.a:Ga0121352_10010); c00019_3300014.. (original name was: 3300014623.a:Ga0121352_10197); c00020_3300014.. (original name was: 3300014623.a:Ga0121352_10056); c00021_3300014.. (original name was: 3300014623.a:Ga0121352_10009); c00023_3300014.. (original name was: 3300014623.a:Ga0121352_10101); c00024_3300014.. (original name was: 3300014623.a:Ga0121352_10007); c00027_3300014.. (original name was: 3300014623.a:Ga0121352_10004); c00028_3300014.. (original name was: 3300014623.a:Ga0121352_10003); c00031_3300014.. (original name was: 3300014623.a:Ga0121352_10024); c00032_3300014.. (original name was: 3300014623.a:Ga0121352_10058); c00033_3300014.. (original name was: 3300014623.a:Ga0121352_10011); c00036_3300014.. (original name was: 3300014623.a:Ga0121352_10013); c00037_3300014.. (original name was: 3300014623.a:Ga0121352_10014); c00038_3300014.. (original name was: 3300014623.a:Ga0121352_10016); c00039_3300014.. (original name was: 3300014623.a:Ga0121352_10017); c00041_3300014.. (original name was: 3300014623.a:Ga0121352_10019); c00044_3300014.. (original name was: 3300014623.a:Ga0121352_10021); c00045_3300014.. (original name was: 3300014623.a:Ga0121352_10022)

Compact view

c00001_3300014.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 4,019 nt. (total: 4,019 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00003_3300014.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 11,709 nt. (total: 11,709 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 11709:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser) + (gly - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg3_1

Search NORINE for peptide: strict or relaxed

AMP-binding (502..894): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

AMP-binding (1548..1952): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DGedhGtVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 60% (weak)

ctg3_2

Search NORINE for peptide: strict or relaxed

AMP-binding (508..904): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHVSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

c00022_3300014.. - Region 1 - bacteriocin

Download region GenBank file

Location: 63,850 - 74,695 nt. (total: 10,846 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00025_3300014.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 24,785 nt. (total: 24,785 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 24785:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg25_2

Search NORINE for peptide: strict or relaxed

AMP-binding (510..906): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHVSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

c00026_3300014.. - Region 1 - bacteriocin

Download region GenBank file

Location: 118,822 - 129,697 nt. (total: 10,876 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00029_3300014.. - Region 1 - NRPS

Download region GenBank file

Location: 142,160 - 192,227 nt. (total: 50,068 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 142159 - 192227:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (tyr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg29_150

Search NORINE for peptide: strict or relaxed

AMP-binding (3..376): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAATiAAVAK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 90% (moderate)

ctg29_152

Search NORINE for peptide: strict or relaxed

AMP-binding (8..405): X

NRPSPredictor2: phe, trp, phg, tyr, bht

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiWqVtAddK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 50% (weak)

c00030_3300014.. - Region 1 - NRPS

Download region GenBank file

Location: 316,845 - 369,361 nt. (total: 52,517 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 316844 - 369361:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (cys) + (cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg30_313

Search NORINE for peptide: strict or relaxed

AMP-binding (42..447): dhb

NRPSPredictor2: dhb

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: dhb, sal
Small clusters prediction:: dhb, sal
Single AA prediction:: dhb

Stachelhaus prediction details:

Stachelhaus sequence:: tLPAQGVLCK
Nearest Stachelhaus code:: dhb
Stachelhaus code match:: 90% (moderate)

ctg30_315

Search NORINE for peptide: strict or relaxed

AMP-binding (559..949): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

ctg30_316

Search NORINE for peptide: strict or relaxed

AMP-binding (521..919): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYNLSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 100% (strong)

c00034_3300014.. - Region 1 - NAGGN

Download region GenBank file

Location: 44,976 - 59,783 nt. (total: 14,808 nt) Show pHMM detection rules used

NAGGN: ((TIGR03104 or cds(GATase_7 and Asn_synthase)) and TIGR03103 and (TIGR03106 or Peptidase_M42))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00034_3300014.. - Region 2 - NRPS

Download region GenBank file

Location: 92,918 - 145,814 nt. (total: 52,897 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 92917 - 145814:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - D-X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg34_94

Search NORINE for peptide: strict or relaxed

CAL_domain (41..477): pk

minowa: NH2

Prediction, score:

NH2: 156.1
AHBA: 18.5
fatty_acid: 13.2
Acetyl-CoA: 1.4
shikimic_acid: -2.0

AMP-binding (1128..1521): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFGRINK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (2174..2578): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAegiGAVMK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 70% (weak)

AMP-binding (3696..4095): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiWeLtadDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 50% (weak)

c00035_3300014.. - Region 1 - NRPS-like

Download region GenBank file

Location: 23,410 - 49,796 nt. (total: 26,387 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 23409 - 49796:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg35_39

Search NORINE for peptide: strict or relaxed

AMP-binding (177..561): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DsiFlGLVlK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 60% (weak)

c00040_3300014.. - Region 1 - arylpolyene

Download region GenBank file

Location: 80,722 - 124,297 nt. (total: 43,576 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00042_3300014.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 25,249 nt. (total: 25,249 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 25249:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-ser - X - D-X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg42_1

Search NORINE for peptide: strict or relaxed

AMP-binding (528..925): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHVSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (2001..2407): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DGedhGtVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 60% (weak)

AMP-binding (3058..3460): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgeVcGgVtK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 50% (weak)

c00043_3300014.. - Region 1 - betalactone

Download region GenBank file

Location: 1,903 - 30,251 nt. (total: 28,349 nt) Show pHMM detection rules used

betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it