3300015069_4 - 8 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00004_3300015.. (original name was: 3300015069.a:Ga0167633_100008)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	terpene	60,496	82,547

c00006_3300015.. (original name was: 3300015069.a:Ga0167633_100084)

Region	Type	From	To	Most similar known cluster		Similarity
Region 6.1	NRPS	14,974	47,489

c00008_3300015.. (original name was: 3300015069.a:Ga0167633_100003)

Region	Type	From	To	Most similar known cluster		Similarity
Region 8.1	terpene	88,920	109,756
Region 8.2	bacteriocin	215,701	226,549

c00009_3300015.. (original name was: 3300015069.a:Ga0167633_100010)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	NRPS	66,241	116,591

c00011_3300015.. (original name was: 3300015069.a:Ga0167633_100002)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	terpene	121,215	142,243

c00023_3300015.. (original name was: 3300015069.a:Ga0167633_100006)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	lanthipeptide	205,474	228,734

c00033_3300015.. (original name was: 3300015069.a:Ga0167633_100007)

Region	Type	From	To	Most similar known cluster		Similarity
Region 33.1	ladderane	19,244	60,473

Region	Type	From	To	Similarity
Region 4.1	terpene	60,496	82,547
Region 6.1	NRPS	14,974	47,489
Region 8.1	terpene	88,920	109,756
Region 8.2	bacteriocin	215,701	226,549
Region 9.1	NRPS	66,241	116,591
Region 11.1	terpene	121,215	142,243
Region 23.1	lanthipeptide	205,474	228,734
Region 33.1	ladderane	19,244	60,473

No secondary metabolite regions were found in these records:: c00001_3300015.. (original name was: 3300015069.a:Ga0167633_102980); c00002_3300015.. (original name was: 3300015069.a:Ga0167633_101812); c00003_3300015.. (original name was: 3300015069.a:Ga0167633_101109); c00005_3300015.. (original name was: 3300015069.a:Ga0167633_100031); c00007_3300015.. (original name was: 3300015069.a:Ga0167633_100015); c00010_3300015.. (original name was: 3300015069.a:Ga0167633_100136); c00012_3300015.. (original name was: 3300015069.a:Ga0167633_100096); c00013_3300015.. (original name was: 3300015069.a:Ga0167633_100095); c00014_3300015.. (original name was: 3300015069.a:Ga0167633_100377); c00015_3300015.. (original name was: 3300015069.a:Ga0167633_101090); c00016_3300015.. (original name was: 3300015069.a:Ga0167633_100009); c00017_3300015.. (original name was: 3300015069.a:Ga0167633_100133); c00018_3300015.. (original name was: 3300015069.a:Ga0167633_100012); c00019_3300015.. (original name was: 3300015069.a:Ga0167633_100623); c00020_3300015.. (original name was: 3300015069.a:Ga0167633_100004); c00021_3300015.. (original name was: 3300015069.a:Ga0167633_100051); c00022_3300015.. (original name was: 3300015069.a:Ga0167633_100005); c00024_3300015.. (original name was: 3300015069.a:Ga0167633_100016); c00025_3300015.. (original name was: 3300015069.a:Ga0167633_102649); c00026_3300015.. (original name was: 3300015069.a:Ga0167633_100064); c00027_3300015.. (original name was: 3300015069.a:Ga0167633_100017); c00028_3300015.. (original name was: 3300015069.a:Ga0167633_100011); c00029_3300015.. (original name was: 3300015069.a:Ga0167633_100058); c00030_3300015.. (original name was: 3300015069.a:Ga0167633_100105); c00031_3300015.. (original name was: 3300015069.a:Ga0167633_100013); c00032_3300015.. (original name was: 3300015069.a:Ga0167633_102451); c00034_3300015.. (original name was: 3300015069.a:Ga0167633_100076)

Compact view

c00004_3300015.. - Region 1 - terpene

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Location: 60,496 - 82,547 nt. (total: 22,052 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

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c00006_3300015.. - Region 1 - NRPS

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Location: 14,974 - 47,489 nt. (total: 32,516 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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core biosynthetic genes

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 14973 - 47489:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ala) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg6_41

Search NORINE for peptide: strict or relaxed

AMP-binding (604..1009): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgeDIsViiK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 50% (weak)

ctg6_45

Search NORINE for peptide: strict or relaxed

AMP-binding (0..349): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNsALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 90% (moderate)

c00008_3300015.. - Region 1 - terpene

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Location: 88,920 - 109,756 nt. (total: 20,837 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

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c00008_3300015.. - Region 2 - bacteriocin

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Location: 215,701 - 226,549 nt. (total: 10,849 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

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other genes

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Gene details

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c00009_3300015.. - Region 1 - NRPS

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Location: 66,241 - 116,591 nt. (total: 50,351 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 66240 - 116591:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu) + (val)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg9_89

Search NORINE for peptide: strict or relaxed

AMP-binding (507..905): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DAFWlGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

ctg9_91

Search NORINE for peptide: strict or relaxed

AMP-binding (40..434): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DAWFLGNVVK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 100% (strong)

c00011_3300015.. - Region 1 - terpene

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Location: 121,215 - 142,243 nt. (total: 21,029 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00023_3300015.. - Region 1 - lanthipeptide

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Location: 205,474 - 228,734 nt. (total: 23,261 nt) Show pHMM detection rules used

lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

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Lanthipeptides

Lanthipeptide predictions

Lanthipeptides - No core peptides found.

Lanthipeptides

Core peptide predictions

No core peptides found.

c00033_3300015.. - Region 1 - ladderane

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Location: 19,244 - 60,473 nt. (total: 41,230 nt) Show pHMM detection rules used

ladderane: ladderane

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it