3300017473_7 - 10 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00004_3300017.. (original name was: 3300017473.a:Ga0185331_1001345)

Region	Type	From	To	Most similar known cluster		Similarity
Region 4.1	NRPS-like,T1PKS	1	13,896

c00009_3300017.. (original name was: 3300017473.a:Ga0185331_1000082)

Region	Type	From	To	Most similar known cluster		Similarity
Region 9.1	betalactone	36,377	65,399

c00010_3300017.. (original name was: 3300017473.a:Ga0185331_1007784)

Region	Type	From	To	Most similar known cluster		Similarity
Region 10.1	T1PKS	1	4,120

c00012_3300017.. (original name was: 3300017473.a:Ga0185331_1001699)

Region	Type	From	To	Most similar known cluster		Similarity
Region 12.1	T1PKS	1	11,881

c00015_3300017.. (original name was: 3300017473.a:Ga0185331_1002736)

Region	Type	From	To	Most similar known cluster		Similarity
Region 15.1	NRPS	1	8,591

c00058_3300017.. (original name was: 3300017473.a:Ga0185331_1001721)

Region	Type	From	To	Most similar known cluster		Similarity
Region 58.1	NRPS	1	11,775

c00074_3300017.. (original name was: 3300017473.a:Ga0185331_1005125)

Region	Type	From	To	Most similar known cluster		Similarity
Region 74.1	bacteriocin	1	5,538

c00126_3300017.. (original name was: 3300017473.a:Ga0185331_1000665)

Region	Type	From	To	Most similar known cluster		Similarity
Region 126.1	terpene	3,685	21,442

c00147_3300017.. (original name was: 3300017473.a:Ga0185331_1003286)

Region	Type	From	To	Most similar known cluster		Similarity
Region 147.1	NRPS-like	1	7,553

c00173_3300017.. (original name was: 3300017473.a:Ga0185331_1002719)

Region	Type	From	To	Most similar known cluster		Similarity
Region 173.1	T1PKS	1	8,634

Region	Type	From	To	Similarity
Region 4.1	NRPS-like,T1PKS	1	13,896
Region 9.1	betalactone	36,377	65,399
Region 10.1	T1PKS	1	4,120
Region 12.1	T1PKS	1	11,881
Region 15.1	NRPS	1	8,591
Region 58.1	NRPS	1	11,775
Region 74.1	bacteriocin	1	5,538
Region 126.1	terpene	3,685	21,442
Region 147.1	NRPS-like	1	7,553
Region 173.1	T1PKS	1	8,634

No secondary metabolite regions were found in these records:: c00001_3300017.. (original name was: 3300017473.a:Ga0185331_1011065); c00002_3300017.. (original name was: 3300017473.a:Ga0185331_1009488); c00003_3300017.. (original name was: 3300017473.a:Ga0185331_1005328); c00005_3300017.. (original name was: 3300017473.a:Ga0185331_1000796); c00006_3300017.. (original name was: 3300017473.a:Ga0185331_1000727); c00007_3300017.. (original name was: 3300017473.a:Ga0185331_1000671); c00008_3300017.. (original name was: 3300017473.a:Ga0185331_1000383); c00011_3300017.. (original name was: 3300017473.a:Ga0185331_1006812); c00013_3300017.. (original name was: 3300017473.a:Ga0185331_1011753); c00014_3300017.. (original name was: 3300017473.a:Ga0185331_1008054); c00016_3300017.. (original name was: 3300017473.a:Ga0185331_1008610); c00017_3300017.. (original name was: 3300017473.a:Ga0185331_1005267); c00018_3300017.. (original name was: 3300017473.a:Ga0185331_1003056); c00019_3300017.. (original name was: 3300017473.a:Ga0185331_1000379); c00020_3300017.. (original name was: 3300017473.a:Ga0185331_1011465); c00021_3300017.. (original name was: 3300017473.a:Ga0185331_1004554); c00022_3300017.. (original name was: 3300017473.a:Ga0185331_1010524); c00023_3300017.. (original name was: 3300017473.a:Ga0185331_1003538); c00024_3300017.. (original name was: 3300017473.a:Ga0185331_1008513); c00025_3300017.. (original name was: 3300017473.a:Ga0185331_1008501); c00026_3300017.. (original name was: 3300017473.a:Ga0185331_1007673); c00027_3300017.. (original name was: 3300017473.a:Ga0185331_1011831); c00028_3300017.. (original name was: 3300017473.a:Ga0185331_1006259); c00029_3300017.. (original name was: 3300017473.a:Ga0185331_1008280); c00030_3300017.. (original name was: 3300017473.a:Ga0185331_1005295); c00031_3300017.. (original name was: 3300017473.a:Ga0185331_1005293); c00032_3300017.. (original name was: 3300017473.a:Ga0185331_1004932); c00033_3300017.. (original name was: 3300017473.a:Ga0185331_1004547); c00034_3300017.. (original name was: 3300017473.a:Ga0185331_1011444); c00035_3300017.. (original name was: 3300017473.a:Ga0185331_1004280); c00036_3300017.. (original name was: 3300017473.a:Ga0185331_1008125); c00037_3300017.. (original name was: 3300017473.a:Ga0185331_1004145); c00038_3300017.. (original name was: 3300017473.a:Ga0185331_1003660); c00039_3300017.. (original name was: 3300017473.a:Ga0185331_1008730); c00040_3300017.. (original name was: 3300017473.a:Ga0185331_1003158); c00041_3300017.. (original name was: 3300017473.a:Ga0185331_1003023); c00042_3300017.. (original name was: 3300017473.a:Ga0185331_1002503); c00043_3300017.. (original name was: 3300017473.a:Ga0185331_1002262); c00044_3300017.. (original name was: 3300017473.a:Ga0185331_1001737); c00045_3300017.. (original name was: 3300017473.a:Ga0185331_1008489); c00046_3300017.. (original name was: 3300017473.a:Ga0185331_1004310); c00047_3300017.. (original name was: 3300017473.a:Ga0185331_1003116); c00048_3300017.. (original name was: 3300017473.a:Ga0185331_1000728); c00049_3300017.. (original name was: 3300017473.a:Ga0185331_1001129); c00050_3300017.. (original name was: 3300017473.a:Ga0185331_1000923); c00051_3300017.. (original name was: 3300017473.a:Ga0185331_1006495); c00052_3300017.. (original name was: 3300017473.a:Ga0185331_1000724); c00053_3300017.. (original name was: 3300017473.a:Ga0185331_1001640); c00054_3300017.. (original name was: 3300017473.a:Ga0185331_1001360); c00055_3300017.. (original name was: 3300017473.a:Ga0185331_1005405); c00056_3300017.. (original name was: 3300017473.a:Ga0185331_1006905); c00057_3300017.. (original name was: 3300017473.a:Ga0185331_1001532); c00059_3300017.. (original name was: 3300017473.a:Ga0185331_1000129); c00060_3300017.. (original name was: 3300017473.a:Ga0185331_1002218); c00061_3300017.. (original name was: 3300017473.a:Ga0185331_1001820); c00062_3300017.. (original name was: 3300017473.a:Ga0185331_1001716); c00063_3300017.. (original name was: 3300017473.a:Ga0185331_1000172); c00064_3300017.. (original name was: 3300017473.a:Ga0185331_1000244); c00065_3300017.. (original name was: 3300017473.a:Ga0185331_1001233); c00066_3300017.. (original name was: 3300017473.a:Ga0185331_1003820); c00067_3300017.. (original name was: 3300017473.a:Ga0185331_1005116); c00068_3300017.. (original name was: 3300017473.a:Ga0185331_1000738); c00069_3300017.. (original name was: 3300017473.a:Ga0185331_1000340); c00070_3300017.. (original name was: 3300017473.a:Ga0185331_1003723); c00071_3300017.. (original name was: 3300017473.a:Ga0185331_1000910); c00072_3300017.. (original name was: 3300017473.a:Ga0185331_1006376); c00073_3300017.. (original name was: 3300017473.a:Ga0185331_1000207); c00075_3300017.. (original name was: 3300017473.a:Ga0185331_1001543); c00076_3300017.. (original name was: 3300017473.a:Ga0185331_1000747); c00077_3300017.. (original name was: 3300017473.a:Ga0185331_1002123); c00078_3300017.. (original name was: 3300017473.a:Ga0185331_1006536); c00079_3300017.. (original name was: 3300017473.a:Ga0185331_1000765); c00080_3300017.. (original name was: 3300017473.a:Ga0185331_1001381); c00081_3300017.. (original name was: 3300017473.a:Ga0185331_1000600); c00082_3300017.. (original name was: 3300017473.a:Ga0185331_1000799); c00083_3300017.. (original name was: 3300017473.a:Ga0185331_1011932); c00084_3300017.. (original name was: 3300017473.a:Ga0185331_1001186); c00085_3300017.. (original name was: 3300017473.a:Ga0185331_1001593); c00086_3300017.. (original name was: 3300017473.a:Ga0185331_1000598); c00087_3300017.. (original name was: 3300017473.a:Ga0185331_1006321); c00088_3300017.. (original name was: 3300017473.a:Ga0185331_1000695); c00089_3300017.. (original name was: 3300017473.a:Ga0185331_1000501); c00090_3300017.. (original name was: 3300017473.a:Ga0185331_1000504); c00091_3300017.. (original name was: 3300017473.a:Ga0185331_1006332); c00092_3300017.. (original name was: 3300017473.a:Ga0185331_1002153); c00093_3300017.. (original name was: 3300017473.a:Ga0185331_1001613); c00094_3300017.. (original name was: 3300017473.a:Ga0185331_1001484); c00095_3300017.. (original name was: 3300017473.a:Ga0185331_1000360); c00096_3300017.. (original name was: 3300017473.a:Ga0185331_1001118); c00097_3300017.. (original name was: 3300017473.a:Ga0185331_1003956); c00098_3300017.. (original name was: 3300017473.a:Ga0185331_1008334); c00099_3300017.. (original name was: 3300017473.a:Ga0185331_1003669); c00100_3300017.. (original name was: 3300017473.a:Ga0185331_1001612); c00101_3300017.. (original name was: 3300017473.a:Ga0185331_1009420); c00102_3300017.. (original name was: 3300017473.a:Ga0185331_1003649); c00103_3300017.. (original name was: 3300017473.a:Ga0185331_1003560); c00104_3300017.. (original name was: 3300017473.a:Ga0185331_1000973); c00105_3300017.. (original name was: 3300017473.a:Ga0185331_1005047); c00106_3300017.. (original name was: 3300017473.a:Ga0185331_1008155); c00107_3300017.. (original name was: 3300017473.a:Ga0185331_1002583); c00108_3300017.. (original name was: 3300017473.a:Ga0185331_1005767); c00109_3300017.. (original name was: 3300017473.a:Ga0185331_1001557); c00110_3300017.. (original name was: 3300017473.a:Ga0185331_1000960); c00111_3300017.. (original name was: 3300017473.a:Ga0185331_1002239); c00112_3300017.. (original name was: 3300017473.a:Ga0185331_1011791); c00113_3300017.. (original name was: 3300017473.a:Ga0185331_1012189); c00114_3300017.. (original name was: 3300017473.a:Ga0185331_1000201); c00115_3300017.. (original name was: 3300017473.a:Ga0185331_1001196); c00116_3300017.. (original name was: 3300017473.a:Ga0185331_1007306); c00117_3300017.. (original name was: 3300017473.a:Ga0185331_1001854); c00118_3300017.. (original name was: 3300017473.a:Ga0185331_1006554); c00119_3300017.. (original name was: 3300017473.a:Ga0185331_1001809); c00120_3300017.. (original name was: 3300017473.a:Ga0185331_1001013); c00121_3300017.. (original name was: 3300017473.a:Ga0185331_1000181); c00122_3300017.. (original name was: 3300017473.a:Ga0185331_1001375); c00123_3300017.. (original name was: 3300017473.a:Ga0185331_1000778); c00124_3300017.. (original name was: 3300017473.a:Ga0185331_1001211); c00125_3300017.. (original name was: 3300017473.a:Ga0185331_1005788); c00127_3300017.. (original name was: 3300017473.a:Ga0185331_1000188); c00128_3300017.. (original name was: 3300017473.a:Ga0185331_1001800); c00129_3300017.. (original name was: 3300017473.a:Ga0185331_1004088); c00130_3300017.. (original name was: 3300017473.a:Ga0185331_1000506); c00131_3300017.. (original name was: 3300017473.a:Ga0185331_1004192); c00132_3300017.. (original name was: 3300017473.a:Ga0185331_1001563); c00133_3300017.. (original name was: 3300017473.a:Ga0185331_1001961); c00134_3300017.. (original name was: 3300017473.a:Ga0185331_1001282); c00135_3300017.. (original name was: 3300017473.a:Ga0185331_1003700); c00136_3300017.. (original name was: 3300017473.a:Ga0185331_1001591); c00137_3300017.. (original name was: 3300017473.a:Ga0185331_1007362); c00138_3300017.. (original name was: 3300017473.a:Ga0185331_1000795); c00139_3300017.. (original name was: 3300017473.a:Ga0185331_1002188); c00140_3300017.. (original name was: 3300017473.a:Ga0185331_1000596); c00141_3300017.. (original name was: 3300017473.a:Ga0185331_1000086); c00142_3300017.. (original name was: 3300017473.a:Ga0185331_1001280); c00143_3300017.. (original name was: 3300017473.a:Ga0185331_1003270); c00144_3300017.. (original name was: 3300017473.a:Ga0185331_1000285); c00145_3300017.. (original name was: 3300017473.a:Ga0185331_1001081); c00146_3300017.. (original name was: 3300017473.a:Ga0185331_1000490); c00148_3300017.. (original name was: 3300017473.a:Ga0185331_1000102); c00149_3300017.. (original name was: 3300017473.a:Ga0185331_1010458); c00150_3300017.. (original name was: 3300017473.a:Ga0185331_1009264); c00151_3300017.. (original name was: 3300017473.a:Ga0185331_1000508); c00152_3300017.. (original name was: 3300017473.a:Ga0185331_1006279); c00153_3300017.. (original name was: 3300017473.a:Ga0185331_1001105); c00154_3300017.. (original name was: 3300017473.a:Ga0185331_1007216); c00155_3300017.. (original name was: 3300017473.a:Ga0185331_1002911); c00156_3300017.. (original name was: 3300017473.a:Ga0185331_1000523); c00157_3300017.. (original name was: 3300017473.a:Ga0185331_1004341); c00158_3300017.. (original name was: 3300017473.a:Ga0185331_1010232); c00159_3300017.. (original name was: 3300017473.a:Ga0185331_1000276); c00160_3300017.. (original name was: 3300017473.a:Ga0185331_1003440); c00161_3300017.. (original name was: 3300017473.a:Ga0185331_1003042); c00162_3300017.. (original name was: 3300017473.a:Ga0185331_1000256); c00163_3300017.. (original name was: 3300017473.a:Ga0185331_1000455); c00164_3300017.. (original name was: 3300017473.a:Ga0185331_1003792); c00165_3300017.. (original name was: 3300017473.a:Ga0185331_1004382); c00166_3300017.. (original name was: 3300017473.a:Ga0185331_1006571); c00167_3300017.. (original name was: 3300017473.a:Ga0185331_1000601); c00168_3300017.. (original name was: 3300017473.a:Ga0185331_1000203); c00169_3300017.. (original name was: 3300017473.a:Ga0185331_1001283); c00170_3300017.. (original name was: 3300017473.a:Ga0185331_1004467); c00171_3300017.. (original name was: 3300017473.a:Ga0185331_1006059); c00172_3300017.. (original name was: 3300017473.a:Ga0185331_1001622); c00174_3300017.. (original name was: 3300017473.a:Ga0185331_1000132); c00175_3300017.. (original name was: 3300017473.a:Ga0185331_1001026); c00176_3300017.. (original name was: 3300017473.a:Ga0185331_1007856); c00177_3300017.. (original name was: 3300017473.a:Ga0185331_1000493); c00178_3300017.. (original name was: 3300017473.a:Ga0185331_1000791); c00179_3300017.. (original name was: 3300017473.a:Ga0185331_1002335); c00180_3300017.. (original name was: 3300017473.a:Ga0185331_1002932); c00181_3300017.. (original name was: 3300017473.a:Ga0185331_1002733); c00182_3300017.. (original name was: 3300017473.a:Ga0185331_1000146); c00183_3300017.. (original name was: 3300017473.a:Ga0185331_1003004); c00184_3300017.. (original name was: 3300017473.a:Ga0185331_1004487); c00185_3300017.. (original name was: 3300017473.a:Ga0185331_1004089); c00186_3300017.. (original name was: 3300017473.a:Ga0185331_1001303); c00187_3300017.. (original name was: 3300017473.a:Ga0185331_1000624); c00188_3300017.. (original name was: 3300017473.a:Ga0185331_1001730); c00189_3300017.. (original name was: 3300017473.a:Ga0185331_1001133); c00190_3300017.. (original name was: 3300017473.a:Ga0185331_1000900); c00191_3300017.. (original name was: 3300017473.a:Ga0185331_1008970); c00192_3300017.. (original name was: 3300017473.a:Ga0185331_1000214); c00193_3300017.. (original name was: 3300017473.a:Ga0185331_1001853)

Compact view

c00004_3300017.. - Region 1 - NRPS-like,T1PKS

Download region GenBank file

Location: 1 - 13,896 nt. (total: 13,896 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 13896:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ccmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg4_2

CAL_domain (41..465): pk

minowa: NH2

Prediction, score:

NH2: 130.3
AHBA: 7.0
fatty_acid: 6.2
Acetyl-CoA: 2.0
shikimic_acid: 0.0

PKS_AT (1195..1488): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 168.7
inactive: 127.0
Methylmalonyl-CoA: 58.1
Methoxymalonyl-CoA: 47.2
Propionyl-CoA: 45.1
fatty_acid: 28.4
Isobutyryl-CoA: 22.0
CHC-CoA: 20.7
2-Methylbutyryl-CoA: 19.8
trans-1,2-CPDA: 15.3
Acetyl-CoA: 14.2
Benzoyl-CoA: 13.9
Ethylmalonyl-CoA: 13.2
3-Methylbutyryl-CoA: 4.3

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 83.3%; 2-Rhyd-Malonyl-CoA: 58.3%

c00009_3300017.. - Region 1 - betalactone

Download region GenBank file

Location: 36,377 - 65,399 nt. (total: 29,023 nt) Show pHMM detection rules used

Region on contig edge.

betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00010_3300017.. - Region 1 - T1PKS

Download region GenBank file

Location: 1 - 4,120 nt. (total: 4,120 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00012_3300017.. - Region 1 - T1PKS

Download region GenBank file

Location: 1 - 11,881 nt. (total: 11,881 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 11881:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ccmal) + (ccmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg12_1

PKS_AT (330..625): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 204.5
inactive: 133.6
Methylmalonyl-CoA: 60.4
Methoxymalonyl-CoA: 56.3
Propionyl-CoA: 43.8
Ethylmalonyl-CoA: 33.0
2-Methylbutyryl-CoA: 31.5
Isobutyryl-CoA: 31.2
Benzoyl-CoA: 25.1
Acetyl-CoA: 21.1
CHC-CoA: 15.8
fatty_acid: 14.3
trans-1,2-CPDA: 12.5
3-Methylbutyryl-CoA: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 87.5%; 2-Rhyd-Malonyl-CoA: 54.2%

ctg12_2

PKS_AT (571..871): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 182.3
inactive: 134.1
Methoxymalonyl-CoA: 84.0
Methylmalonyl-CoA: 83.5
Propionyl-CoA: 52.7
Ethylmalonyl-CoA: 48.9
Isobutyryl-CoA: 44.8
Benzoyl-CoA: 33.3
CHC-CoA: 30.4
Acetyl-CoA: 25.5
2-Methylbutyryl-CoA: 24.1
fatty_acid: 21.9
trans-1,2-CPDA: 16.3
3-Methylbutyryl-CoA: 13.2

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 83.3%; 2-Rhyd-Malonyl-CoA: 54.2%

c00015_3300017.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 8,591 nt. (total: 8,591 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00058_3300017.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 11,775 nt. (total: 11,775 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 11775:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (thr - gly)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg58_1

Search NORINE for peptide: strict or relaxed

AMP-binding (541..939): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWSVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (1935..2330): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGmVWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 90% (moderate)

c00074_3300017.. - Region 1 - bacteriocin

Download region GenBank file

Location: 1 - 5,538 nt. (total: 5,538 nt) Show pHMM detection rules used

Region on contig edge.

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

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c00126_3300017.. - Region 1 - terpene

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Location: 3,685 - 21,442 nt. (total: 17,758 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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core biosynthetic genes

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c00147_3300017.. - Region 1 - NRPS-like

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Location: 1 - 7,553 nt. (total: 7,553 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

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resistance

TTA codons

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00173_3300017.. - Region 1 - T1PKS

Download region GenBank file

Location: 1 - 8,634 nt. (total: 8,634 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 8634:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ohmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg173_3

PKS_AT (542..825): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 65.8
inactive: 52.7
Methoxymalonyl-CoA: 28.9
Methylmalonyl-CoA: 25.2
Isobutyryl-CoA: 19.9
Propionyl-CoA: 14.6
2-Methylbutyryl-CoA: 14.5
3-Methylbutyryl-CoA: 13.2
CHC-CoA: 11.8
Ethylmalonyl-CoA: 9.9
Acetyl-CoA: 9.5
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
Benzoyl-CoA: 0.0

ATSignature: (unknown)

No matches above 50%