3300017505_2 - 9 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00014_3300017.. (original name was: 3300017505.a:Ga0185315_1000097)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	NRPS,T1PKS	15,613	66,736

c00022_3300017.. (original name was: 3300017505.a:Ga0185315_1000024)

Region	Type	From	To	Most similar known cluster		Similarity
Region 22.1	terpene	50,167	71,057

c00029_3300017.. (original name was: 3300017505.a:Ga0185315_1000069)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	NRPS	27,603	76,514

c00030_3300017.. (original name was: 3300017505.a:Ga0185315_1003850)

Region	Type	From	To	Most similar known cluster		Similarity
Region 30.1	cyanobactin	1	6,802

c00040_3300017.. (original name was: 3300017505.a:Ga0185315_1000030)

Region	Type	From	To	Most similar known cluster		Similarity
Region 40.1	NRPS	1	42,274

c00052_3300017.. (original name was: 3300017505.a:Ga0185315_1000047)

Region	Type	From	To	Most similar known cluster		Similarity
Region 52.1	NRPS-like,T1PKS	1	37,961

c00073_3300017.. (original name was: 3300017505.a:Ga0185315_1000071)

Region	Type	From	To	Most similar known cluster		Similarity
Region 73.1	NRPS-like	31,305	74,646

c00085_3300017.. (original name was: 3300017505.a:Ga0185315_1000152)

Region	Type	From	To	Most similar known cluster		Similarity
Region 85.1	T1PKS	27,809	52,735

c00090_3300017.. (original name was: 3300017505.a:Ga0185315_1000205)

Region	Type	From	To	Most similar known cluster		Similarity
Region 90.1	cyanobactin,bacteriocin	1	18,671

Region	Type	From	To	Similarity
Region 14.1	NRPS,T1PKS	15,613	66,736
Region 22.1	terpene	50,167	71,057
Region 29.1	NRPS	27,603	76,514
Region 30.1	cyanobactin	1	6,802
Region 40.1	NRPS	1	42,274
Region 52.1	NRPS-like,T1PKS	1	37,961
Region 73.1	NRPS-like	31,305	74,646
Region 85.1	T1PKS	27,809	52,735
Region 90.1	cyanobactin,bacteriocin	1	18,671

No secondary metabolite regions were found in these records:: c00001_3300017.. (original name was: 3300017505.a:Ga0185315_1011866); c00002_3300017.. (original name was: 3300017505.a:Ga0185315_1001082); c00003_3300017.. (original name was: 3300017505.a:Ga0185315_1000386); c00004_3300017.. (original name was: 3300017505.a:Ga0185315_1000232); c00005_3300017.. (original name was: 3300017505.a:Ga0185315_1000273); c00006_3300017.. (original name was: 3300017505.a:Ga0185315_1000053); c00007_3300017.. (original name was: 3300017505.a:Ga0185315_1000133); c00008_3300017.. (original name was: 3300017505.a:Ga0185315_1002123); c00009_3300017.. (original name was: 3300017505.a:Ga0185315_1000304); c00010_3300017.. (original name was: 3300017505.a:Ga0185315_1000105); c00011_3300017.. (original name was: 3300017505.a:Ga0185315_1000414); c00012_3300017.. (original name was: 3300017505.a:Ga0185315_1000180); c00013_3300017.. (original name was: 3300017505.a:Ga0185315_1000122); c00015_3300017.. (original name was: 3300017505.a:Ga0185315_1000423); c00016_3300017.. (original name was: 3300017505.a:Ga0185315_1000111); c00017_3300017.. (original name was: 3300017505.a:Ga0185315_1000017); c00018_3300017.. (original name was: 3300017505.a:Ga0185315_1000057); c00019_3300017.. (original name was: 3300017505.a:Ga0185315_1000044); c00020_3300017.. (original name was: 3300017505.a:Ga0185315_1000091); c00021_3300017.. (original name was: 3300017505.a:Ga0185315_1002081); c00023_3300017.. (original name was: 3300017505.a:Ga0185315_1000094); c00024_3300017.. (original name was: 3300017505.a:Ga0185315_1000293); c00025_3300017.. (original name was: 3300017505.a:Ga0185315_1000284); c00026_3300017.. (original name was: 3300017505.a:Ga0185315_1000575); c00027_3300017.. (original name was: 3300017505.a:Ga0185315_1000241); c00028_3300017.. (original name was: 3300017505.a:Ga0185315_1000457); c00031_3300017.. (original name was: 3300017505.a:Ga0185315_1000225); c00032_3300017.. (original name was: 3300017505.a:Ga0185315_1002068); c00033_3300017.. (original name was: 3300017505.a:Ga0185315_1000904); c00034_3300017.. (original name was: 3300017505.a:Ga0185315_1000128); c00035_3300017.. (original name was: 3300017505.a:Ga0185315_1005492); c00036_3300017.. (original name was: 3300017505.a:Ga0185315_1000776); c00037_3300017.. (original name was: 3300017505.a:Ga0185315_1008182); c00038_3300017.. (original name was: 3300017505.a:Ga0185315_1001586); c00039_3300017.. (original name was: 3300017505.a:Ga0185315_1007596); c00041_3300017.. (original name was: 3300017505.a:Ga0185315_1004629); c00042_3300017.. (original name was: 3300017505.a:Ga0185315_1000361); c00043_3300017.. (original name was: 3300017505.a:Ga0185315_1002449); c00044_3300017.. (original name was: 3300017505.a:Ga0185315_1002364); c00045_3300017.. (original name was: 3300017505.a:Ga0185315_1000109); c00046_3300017.. (original name was: 3300017505.a:Ga0185315_1001738); c00047_3300017.. (original name was: 3300017505.a:Ga0185315_1000089); c00048_3300017.. (original name was: 3300017505.a:Ga0185315_1001438); c00049_3300017.. (original name was: 3300017505.a:Ga0185315_1000080); c00050_3300017.. (original name was: 3300017505.a:Ga0185315_1000213); c00051_3300017.. (original name was: 3300017505.a:Ga0185315_1000116); c00053_3300017.. (original name was: 3300017505.a:Ga0185315_1001440); c00054_3300017.. (original name was: 3300017505.a:Ga0185315_1005674); c00055_3300017.. (original name was: 3300017505.a:Ga0185315_1000500); c00056_3300017.. (original name was: 3300017505.a:Ga0185315_1000403); c00057_3300017.. (original name was: 3300017505.a:Ga0185315_1000079); c00058_3300017.. (original name was: 3300017505.a:Ga0185315_1003770); c00059_3300017.. (original name was: 3300017505.a:Ga0185315_1000181); c00060_3300017.. (original name was: 3300017505.a:Ga0185315_1000480); c00061_3300017.. (original name was: 3300017505.a:Ga0185315_1001159); c00062_3300017.. (original name was: 3300017505.a:Ga0185315_1000525); c00063_3300017.. (original name was: 3300017505.a:Ga0185315_1000173); c00064_3300017.. (original name was: 3300017505.a:Ga0185315_1000646); c00065_3300017.. (original name was: 3300017505.a:Ga0185315_1000064); c00066_3300017.. (original name was: 3300017505.a:Ga0185315_1000148); c00067_3300017.. (original name was: 3300017505.a:Ga0185315_1000253); c00068_3300017.. (original name was: 3300017505.a:Ga0185315_1000054); c00069_3300017.. (original name was: 3300017505.a:Ga0185315_1000039); c00070_3300017.. (original name was: 3300017505.a:Ga0185315_1000636); c00071_3300017.. (original name was: 3300017505.a:Ga0185315_1000490); c00072_3300017.. (original name was: 3300017505.a:Ga0185315_1000750); c00074_3300017.. (original name was: 3300017505.a:Ga0185315_1002201); c00075_3300017.. (original name was: 3300017505.a:Ga0185315_1000609); c00076_3300017.. (original name was: 3300017505.a:Ga0185315_1000027); c00077_3300017.. (original name was: 3300017505.a:Ga0185315_1000370); c00078_3300017.. (original name was: 3300017505.a:Ga0185315_1000967); c00079_3300017.. (original name was: 3300017505.a:Ga0185315_1000535); c00080_3300017.. (original name was: 3300017505.a:Ga0185315_1000336); c00081_3300017.. (original name was: 3300017505.a:Ga0185315_1000103); c00082_3300017.. (original name was: 3300017505.a:Ga0185315_1000319); c00083_3300017.. (original name was: 3300017505.a:Ga0185315_1000028); c00084_3300017.. (original name was: 3300017505.a:Ga0185315_1000610); c00086_3300017.. (original name was: 3300017505.a:Ga0185315_1000346); c00087_3300017.. (original name was: 3300017505.a:Ga0185315_1002137); c00088_3300017.. (original name was: 3300017505.a:Ga0185315_1000003); c00089_3300017.. (original name was: 3300017505.a:Ga0185315_1000011); c00091_3300017.. (original name was: 3300017505.a:Ga0185315_1000802); c00092_3300017.. (original name was: 3300017505.a:Ga0185315_1000199); c00093_3300017.. (original name was: 3300017505.a:Ga0185315_1000398); c00094_3300017.. (original name was: 3300017505.a:Ga0185315_1000060); c00095_3300017.. (original name was: 3300017505.a:Ga0185315_1000657); c00096_3300017.. (original name was: 3300017505.a:Ga0185315_1000075); c00097_3300017.. (original name was: 3300017505.a:Ga0185315_1000008); c00098_3300017.. (original name was: 3300017505.a:Ga0185315_1000032); c00099_3300017.. (original name was: 3300017505.a:Ga0185315_1000004); c00100_3300017.. (original name was: 3300017505.a:Ga0185315_1000265); c00101_3300017.. (original name was: 3300017505.a:Ga0185315_1000862); c00102_3300017.. (original name was: 3300017505.a:Ga0185315_1000183); c00103_3300017.. (original name was: 3300017505.a:Ga0185315_1000099); c00104_3300017.. (original name was: 3300017505.a:Ga0185315_1004021); c00105_3300017.. (original name was: 3300017505.a:Ga0185315_1000041); c00106_3300017.. (original name was: 3300017505.a:Ga0185315_1000357); c00107_3300017.. (original name was: 3300017505.a:Ga0185315_1000842); c00108_3300017.. (original name was: 3300017505.a:Ga0185315_1000046); c00109_3300017.. (original name was: 3300017505.a:Ga0185315_1000048); c00110_3300017.. (original name was: 3300017505.a:Ga0185315_1001640); c00111_3300017.. (original name was: 3300017505.a:Ga0185315_1000242); c00112_3300017.. (original name was: 3300017505.a:Ga0185315_1000043); c00113_3300017.. (original name was: 3300017505.a:Ga0185315_1000086); c00114_3300017.. (original name was: 3300017505.a:Ga0185315_1013817); c00115_3300017.. (original name was: 3300017505.a:Ga0185315_1001289); c00116_3300017.. (original name was: 3300017505.a:Ga0185315_1000493); c00117_3300017.. (original name was: 3300017505.a:Ga0185315_1004871); c00118_3300017.. (original name was: 3300017505.a:Ga0185315_1000095); c00119_3300017.. (original name was: 3300017505.a:Ga0185315_1000825); c00120_3300017.. (original name was: 3300017505.a:Ga0185315_1001927); c00121_3300017.. (original name was: 3300017505.a:Ga0185315_1000534); c00122_3300017.. (original name was: 3300017505.a:Ga0185315_1004713)

Compact view

c00014_3300017.. - Region 1 - NRPS,T1PKS

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Location: 15,613 - 66,736 nt. (total: 51,124 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00022_3300017.. - Region 1 - terpene

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Location: 50,167 - 71,057 nt. (total: 20,891 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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c00029_3300017.. - Region 1 - NRPS

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Location: 27,603 - 76,514 nt. (total: 48,912 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 27602 - 76514:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (lys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg29_40

Search NORINE for peptide: strict or relaxed

AMP-binding (15..416): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: hiiSrsShqK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 30% (weak)

ctg29_41

Search NORINE for peptide: strict or relaxed

AMP-binding (1066..1469): lys

NRPSPredictor2: lys

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAESIGtVvK
Nearest Stachelhaus code:: lys
Stachelhaus code match:: 80% (moderate)

c00030_3300017.. - Region 1 - cyanobactin

Download region GenBank file

Location: 1 - 6,802 nt. (total: 6,802 nt) Show pHMM detection rules used

Region on contig edge.

cyanobactin: cyanobactin_synth

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00040_3300017.. - Region 1 - NRPS

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Location: 1 - 42,274 nt. (total: 42,274 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 42274:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - cys)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg40_15

Search NORINE for peptide: strict or relaxed

AMP-binding (13..407): X

NRPSPredictor2: gly, ala, val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DIaQwtLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 70% (weak)

AMP-binding (1460..1752): cys

NRPSPredictor2: cys

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: cys
Small clusters prediction:: cys
Single AA prediction:: cys

Stachelhaus prediction details:

Stachelhaus sequence:: DLYdfSLIWK
Nearest Stachelhaus code:: cys
Stachelhaus code match:: 80% (moderate)

c00052_3300017.. - Region 1 - NRPS-like,T1PKS

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Location: 1 - 37,961 nt. (total: 37,961 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 37961:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - redmal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg52_8

Search NORINE for peptide: strict or relaxed

AMP-binding (10..420): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DSaLiAEVwK
Nearest Stachelhaus code:: his
Stachelhaus code match:: 70% (weak)

PKS_AT (1557..1849): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 194.5
inactive: 184.6
Methoxymalonyl-CoA: 60.4
Methylmalonyl-CoA: 57.1
Propionyl-CoA: 37.7
Isobutyryl-CoA: 27.2
Acetyl-CoA: 24.6
Benzoyl-CoA: 20.7
Ethylmalonyl-CoA: 15.3
trans-1,2-CPDA: 13.7
2-Methylbutyryl-CoA: 13.5
CHC-CoA: 9.0
fatty_acid: 0.0
3-Methylbutyryl-CoA: 0.0

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 95.8%

c00073_3300017.. - Region 1 - NRPS-like

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Location: 31,305 - 74,646 nt. (total: 43,342 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 31304 - 74646:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg73_47

Search NORINE for peptide: strict or relaxed

AMP-binding (13..408): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DtcQwtLVWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 60% (weak)

c00085_3300017.. - Region 1 - T1PKS

Download region GenBank file

Location: 27,809 - 52,735 nt. (total: 24,927 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00090_3300017.. - Region 1 - bacteriocin,cyanobactin

Download region GenBank file

Location: 1 - 18,671 nt. (total: 18,671 nt) Show pHMM detection rules used

Region on contig edge.

cyanobactin: cyanobactin_synth
bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it