3300019861_4 - 9 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00025_3300019.. (original name was: 3300019861.a:Ga0206388_1181283)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	hserlactone	58,283	78,876

c00027_3300019.. (original name was: 3300019861.a:Ga0206388_1029920)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	NRPS	1	46,336

c00038_3300019.. (original name was: 3300019861.a:Ga0206388_1126925)

Region	Type	From	To	Most similar known cluster		Similarity
Region 38.1	NRPS	1	40,251

c00091_3300019.. (original name was: 3300019861.a:Ga0206388_1052204)

Region	Type	From	To	Most similar known cluster		Similarity
Region 91.1	T1PKS,NRPS	1	57,679

c00107_3300019.. (original name was: 3300019861.a:Ga0206388_1058080)

Region	Type	From	To	Most similar known cluster		Similarity
Region 107.1	NRPS	1	47,674

c00126_3300019.. (original name was: 3300019861.a:Ga0206388_1179437)

Region	Type	From	To	Most similar known cluster		Similarity
Region 126.1	hglE-KS,T1PKS	1	40,074

c00127_3300019.. (original name was: 3300019861.a:Ga0206388_1151450)

Region	Type	From	To	Most similar known cluster		Similarity
Region 127.1	hglE-KS	1	40,084
Region 127.2	bacteriocin	105,296	116,105

c00129_3300019.. (original name was: 3300019861.a:Ga0206388_1029702)

Region	Type	From	To	Most similar known cluster		Similarity
Region 129.1	NRPS-like	11,070	43,766

Region	Type	From	To	Similarity
Region 25.1	hserlactone	58,283	78,876
Region 27.1	NRPS	1	46,336
Region 38.1	NRPS	1	40,251
Region 91.1	T1PKS,NRPS	1	57,679
Region 107.1	NRPS	1	47,674
Region 126.1	hglE-KS,T1PKS	1	40,074
Region 127.1	hglE-KS	1	40,084
Region 127.2	bacteriocin	105,296	116,105
Region 129.1	NRPS-like	11,070	43,766

No secondary metabolite regions were found in these records:: c00001_3300019.. (original name was: 3300019861.a:Ga0206388_1177841); c00002_3300019.. (original name was: 3300019861.a:Ga0206388_1173089); c00003_3300019.. (original name was: 3300019861.a:Ga0206388_1172217); c00004_3300019.. (original name was: 3300019861.a:Ga0206388_1168043); c00005_3300019.. (original name was: 3300019861.a:Ga0206388_1163134); c00006_3300019.. (original name was: 3300019861.a:Ga0206388_1143019); c00007_3300019.. (original name was: 3300019861.a:Ga0206388_1121415); c00008_3300019.. (original name was: 3300019861.a:Ga0206388_1091268); c00009_3300019.. (original name was: 3300019861.a:Ga0206388_1089603); c00010_3300019.. (original name was: 3300019861.a:Ga0206388_1062873); c00011_3300019.. (original name was: 3300019861.a:Ga0206388_1056999); c00012_3300019.. (original name was: 3300019861.a:Ga0206388_1054076); c00013_3300019.. (original name was: 3300019861.a:Ga0206388_1052782); c00014_3300019.. (original name was: 3300019861.a:Ga0206388_1051503); c00015_3300019.. (original name was: 3300019861.a:Ga0206388_1034805); c00016_3300019.. (original name was: 3300019861.a:Ga0206388_1032975); c00017_3300019.. (original name was: 3300019861.a:Ga0206388_1027676); c00018_3300019.. (original name was: 3300019861.a:Ga0206388_1025979); c00019_3300019.. (original name was: 3300019861.a:Ga0206388_1012845); c00020_3300019.. (original name was: 3300019861.a:Ga0206388_1011969); c00021_3300019.. (original name was: 3300019861.a:Ga0206388_1011518); c00022_3300019.. (original name was: 3300019861.a:Ga0206388_1001940); c00023_3300019.. (original name was: 3300019861.a:Ga0206388_1190829); c00024_3300019.. (original name was: 3300019861.a:Ga0206388_1183270); c00026_3300019.. (original name was: 3300019861.a:Ga0206388_1177639); c00028_3300019.. (original name was: 3300019861.a:Ga0206388_1172230); c00029_3300019.. (original name was: 3300019861.a:Ga0206388_1164251); c00030_3300019.. (original name was: 3300019861.a:Ga0206388_1163959); c00031_3300019.. (original name was: 3300019861.a:Ga0206388_1160310); c00032_3300019.. (original name was: 3300019861.a:Ga0206388_1146123); c00033_3300019.. (original name was: 3300019861.a:Ga0206388_1140143); c00034_3300019.. (original name was: 3300019861.a:Ga0206388_1020075); c00035_3300019.. (original name was: 3300019861.a:Ga0206388_1138984); c00036_3300019.. (original name was: 3300019861.a:Ga0206388_1127595); c00037_3300019.. (original name was: 3300019861.a:Ga0206388_1016214); c00039_3300019.. (original name was: 3300019861.a:Ga0206388_1151533); c00040_3300019.. (original name was: 3300019861.a:Ga0206388_1108855); c00041_3300019.. (original name was: 3300019861.a:Ga0206388_1169998); c00042_3300019.. (original name was: 3300019861.a:Ga0206388_1107098); c00043_3300019.. (original name was: 3300019861.a:Ga0206388_1086452); c00044_3300019.. (original name was: 3300019861.a:Ga0206388_1137045); c00045_3300019.. (original name was: 3300019861.a:Ga0206388_1062432); c00046_3300019.. (original name was: 3300019861.a:Ga0206388_1054996); c00047_3300019.. (original name was: 3300019861.a:Ga0206388_1028742); c00048_3300019.. (original name was: 3300019861.a:Ga0206388_1012947); c00049_3300019.. (original name was: 3300019861.a:Ga0206388_1011886); c00050_3300019.. (original name was: 3300019861.a:Ga0206388_1091090); c00051_3300019.. (original name was: 3300019861.a:Ga0206388_1011482); c00052_3300019.. (original name was: 3300019861.a:Ga0206388_1179477); c00053_3300019.. (original name was: 3300019861.a:Ga0206388_1061793); c00054_3300019.. (original name was: 3300019861.a:Ga0206388_1092317); c00055_3300019.. (original name was: 3300019861.a:Ga0206388_1179459); c00056_3300019.. (original name was: 3300019861.a:Ga0206388_1080712); c00057_3300019.. (original name was: 3300019861.a:Ga0206388_1083155); c00058_3300019.. (original name was: 3300019861.a:Ga0206388_1161151); c00059_3300019.. (original name was: 3300019861.a:Ga0206388_1030754); c00060_3300019.. (original name was: 3300019861.a:Ga0206388_1157575); c00061_3300019.. (original name was: 3300019861.a:Ga0206388_1186433); c00062_3300019.. (original name was: 3300019861.a:Ga0206388_1076064); c00063_3300019.. (original name was: 3300019861.a:Ga0206388_1028400); c00064_3300019.. (original name was: 3300019861.a:Ga0206388_1120679); c00065_3300019.. (original name was: 3300019861.a:Ga0206388_1060862); c00066_3300019.. (original name was: 3300019861.a:Ga0206388_1128711); c00067_3300019.. (original name was: 3300019861.a:Ga0206388_1006776); c00068_3300019.. (original name was: 3300019861.a:Ga0206388_1036005); c00069_3300019.. (original name was: 3300019861.a:Ga0206388_1181793); c00070_3300019.. (original name was: 3300019861.a:Ga0206388_1051017); c00071_3300019.. (original name was: 3300019861.a:Ga0206388_1092572); c00072_3300019.. (original name was: 3300019861.a:Ga0206388_1114618); c00073_3300019.. (original name was: 3300019861.a:Ga0206388_1036357); c00074_3300019.. (original name was: 3300019861.a:Ga0206388_1018739); c00075_3300019.. (original name was: 3300019861.a:Ga0206388_1049965); c00076_3300019.. (original name was: 3300019861.a:Ga0206388_1074707); c00077_3300019.. (original name was: 3300019861.a:Ga0206388_1108842); c00078_3300019.. (original name was: 3300019861.a:Ga0206388_1049891); c00079_3300019.. (original name was: 3300019861.a:Ga0206388_1037801); c00080_3300019.. (original name was: 3300019861.a:Ga0206388_1179738); c00081_3300019.. (original name was: 3300019861.a:Ga0206388_1054800); c00082_3300019.. (original name was: 3300019861.a:Ga0206388_1001708); c00083_3300019.. (original name was: 3300019861.a:Ga0206388_1017993); c00084_3300019.. (original name was: 3300019861.a:Ga0206388_1138509); c00085_3300019.. (original name was: 3300019861.a:Ga0206388_1063758); c00086_3300019.. (original name was: 3300019861.a:Ga0206388_1025926); c00087_3300019.. (original name was: 3300019861.a:Ga0206388_1043796); c00088_3300019.. (original name was: 3300019861.a:Ga0206388_1031736); c00089_3300019.. (original name was: 3300019861.a:Ga0206388_1040460); c00090_3300019.. (original name was: 3300019861.a:Ga0206388_1021557); c00092_3300019.. (original name was: 3300019861.a:Ga0206388_1044732); c00093_3300019.. (original name was: 3300019861.a:Ga0206388_1190188); c00094_3300019.. (original name was: 3300019861.a:Ga0206388_1001350); c00095_3300019.. (original name was: 3300019861.a:Ga0206388_1116360); c00096_3300019.. (original name was: 3300019861.a:Ga0206388_1025462); c00097_3300019.. (original name was: 3300019861.a:Ga0206388_1156330); c00098_3300019.. (original name was: 3300019861.a:Ga0206388_1176093); c00099_3300019.. (original name was: 3300019861.a:Ga0206388_1181165); c00100_3300019.. (original name was: 3300019861.a:Ga0206388_1043932); c00101_3300019.. (original name was: 3300019861.a:Ga0206388_1167216); c00102_3300019.. (original name was: 3300019861.a:Ga0206388_1025374); c00103_3300019.. (original name was: 3300019861.a:Ga0206388_1170540); c00104_3300019.. (original name was: 3300019861.a:Ga0206388_1103610); c00105_3300019.. (original name was: 3300019861.a:Ga0206388_1101512); c00106_3300019.. (original name was: 3300019861.a:Ga0206388_1058160); c00108_3300019.. (original name was: 3300019861.a:Ga0206388_1187295); c00109_3300019.. (original name was: 3300019861.a:Ga0206388_1068726); c00110_3300019.. (original name was: 3300019861.a:Ga0206388_1015115); c00111_3300019.. (original name was: 3300019861.a:Ga0206388_1019695); c00112_3300019.. (original name was: 3300019861.a:Ga0206388_1150615); c00113_3300019.. (original name was: 3300019861.a:Ga0206388_1168536); c00114_3300019.. (original name was: 3300019861.a:Ga0206388_1155353); c00115_3300019.. (original name was: 3300019861.a:Ga0206388_1031257); c00116_3300019.. (original name was: 3300019861.a:Ga0206388_1042699); c00117_3300019.. (original name was: 3300019861.a:Ga0206388_1122725); c00118_3300019.. (original name was: 3300019861.a:Ga0206388_1003973); c00119_3300019.. (original name was: 3300019861.a:Ga0206388_1078897); c00120_3300019.. (original name was: 3300019861.a:Ga0206388_1135873); c00121_3300019.. (original name was: 3300019861.a:Ga0206388_1145183); c00122_3300019.. (original name was: 3300019861.a:Ga0206388_1155795); c00123_3300019.. (original name was: 3300019861.a:Ga0206388_1104596); c00124_3300019.. (original name was: 3300019861.a:Ga0206388_1011840); c00125_3300019.. (original name was: 3300019861.a:Ga0206388_1185519); c00128_3300019.. (original name was: 3300019861.a:Ga0206388_1105157); c00130_3300019.. (original name was: 3300019861.a:Ga0206388_1047809); c00131_3300019.. (original name was: 3300019861.a:Ga0206388_1034571); c00132_3300019.. (original name was: 3300019861.a:Ga0206388_1098746); c00133_3300019.. (original name was: 3300019861.a:Ga0206388_1182124); c00134_3300019.. (original name was: 3300019861.a:Ga0206388_1184471); c00135_3300019.. (original name was: 3300019861.a:Ga0206388_1048420); c00136_3300019.. (original name was: 3300019861.a:Ga0206388_1190724); c00137_3300019.. (original name was: 3300019861.a:Ga0206388_1065254); c00138_3300019.. (original name was: 3300019861.a:Ga0206388_1047861); c00139_3300019.. (original name was: 3300019861.a:Ga0206388_1067964); c00140_3300019.. (original name was: 3300019861.a:Ga0206388_1070388); c00141_3300019.. (original name was: 3300019861.a:Ga0206388_1119228); c00142_3300019.. (original name was: 3300019861.a:Ga0206388_1073718); c00143_3300019.. (original name was: 3300019861.a:Ga0206388_1022853); c00144_3300019.. (original name was: 3300019861.a:Ga0206388_1075994); c00145_3300019.. (original name was: 3300019861.a:Ga0206388_1078308); c00146_3300019.. (original name was: 3300019861.a:Ga0206388_1088732); c00147_3300019.. (original name was: 3300019861.a:Ga0206388_1096795); c00148_3300019.. (original name was: 3300019861.a:Ga0206388_1146038); c00149_3300019.. (original name was: 3300019861.a:Ga0206388_1057537); c00150_3300019.. (original name was: 3300019861.a:Ga0206388_1147486); c00151_3300019.. (original name was: 3300019861.a:Ga0206388_1114303); c00152_3300019.. (original name was: 3300019861.a:Ga0206388_1122414); c00153_3300019.. (original name was: 3300019861.a:Ga0206388_1123312); c00154_3300019.. (original name was: 3300019861.a:Ga0206388_1150169); c00155_3300019.. (original name was: 3300019861.a:Ga0206388_1124841); c00156_3300019.. (original name was: 3300019861.a:Ga0206388_1132093); c00157_3300019.. (original name was: 3300019861.a:Ga0206388_1079496); c00158_3300019.. (original name was: 3300019861.a:Ga0206388_1064931); c00159_3300019.. (original name was: 3300019861.a:Ga0206388_1133773); c00160_3300019.. (original name was: 3300019861.a:Ga0206388_1140748); c00161_3300019.. (original name was: 3300019861.a:Ga0206388_1062439); c00162_3300019.. (original name was: 3300019861.a:Ga0206388_1150633); c00163_3300019.. (original name was: 3300019861.a:Ga0206388_1131134); c00164_3300019.. (original name was: 3300019861.a:Ga0206388_1068807); c00165_3300019.. (original name was: 3300019861.a:Ga0206388_1151920); c00166_3300019.. (original name was: 3300019861.a:Ga0206388_1069741); c00167_3300019.. (original name was: 3300019861.a:Ga0206388_1160911); c00168_3300019.. (original name was: 3300019861.a:Ga0206388_1038022); c00169_3300019.. (original name was: 3300019861.a:Ga0206388_1015644); c00170_3300019.. (original name was: 3300019861.a:Ga0206388_1173773); c00171_3300019.. (original name was: 3300019861.a:Ga0206388_1113266); c00172_3300019.. (original name was: 3300019861.a:Ga0206388_1176754); c00173_3300019.. (original name was: 3300019861.a:Ga0206388_1181826); c00174_3300019.. (original name was: 3300019861.a:Ga0206388_1190941); c00175_3300019.. (original name was: 3300019861.a:Ga0206388_1008043)

Compact view

c00025_3300019.. - Region 1 - hserlactone

Download region GenBank file

Location: 58,283 - 78,876 nt. (total: 20,594 nt) Show pHMM detection rules used

hserlactone: Autoind_synth

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

c00027_3300019.. - Region 1 - NRPS

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Location: 1 - 46,336 nt. (total: 46,336 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 46336:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ala - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg27_12

Search NORINE for peptide: strict or relaxed

AMP-binding (464..848): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: pro
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DVmFdAGVLK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 80% (moderate)

AMP-binding (1490..1874): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAahVGEVaK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 70% (weak)

c00038_3300019.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 40,251 nt. (total: 40,251 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 40251:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - tyr) + (asn - D-tyr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg38_7

Search NORINE for peptide: strict or relaxed

AMP-binding (536..941): asn

NRPSPredictor2: asn

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKfGEVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

AMP-binding (1585..1992): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DASdIAAVCK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 90% (moderate)

ctg38_8

Search NORINE for peptide: strict or relaxed

AMP-binding (468..877): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAtiiGAICK
Nearest Stachelhaus code:: bht
Stachelhaus code match:: 70% (weak)

AMP-binding (1521..1928): tyr

NRPSPredictor2: tyr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aromatic
Large clusters prediction:: phe, trp, phg, tyr, bht
Small clusters prediction:: tyr, bht
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DASdIAAVCK
Nearest Stachelhaus code:: tyr
Stachelhaus code match:: 90% (moderate)

c00091_3300019.. - Region 1 - NRPS,T1PKS

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Location: 1 - 57,679 nt. (total: 57,679 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 57679:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ccmal) + (mal - ser - D-ser - ser - pro - thr - ser)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg91_6

Search NORINE for peptide: strict or relaxed

PKS_AT (609..931): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 198.5
inactive: 145.0
Methoxymalonyl-CoA: 73.5
Methylmalonyl-CoA: 64.4
Propionyl-CoA: 48.1
Isobutyryl-CoA: 44.3
Benzoyl-CoA: 30.5
Ethylmalonyl-CoA: 29.4
2-Methylbutyryl-CoA: 25.3
Acetyl-CoA: 18.0
CHC-CoA: 15.4
fatty_acid: 14.0
3-Methylbutyryl-CoA: 10.6
trans-1,2-CPDA: 9.5

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 91.7%; inactive: 87.5%; 2-Rhyd-Malonyl-CoA: 54.2%

AMP-binding (2111..2506): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLVDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (3181..3579): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLVDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (4706..5113): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: gly, ala
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVsdLAiiYK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 60% (weak)

AMP-binding (5774..6179): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQYIAHVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 100% (strong)

AMP-binding (6838..7245): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWSVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (8315..8714): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

ctg91_7

PKS_AT (16..311): mmal

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 52.2
Methoxymalonyl-CoA: 47.0
Malonyl-CoA: 20.0
Isobutyryl-CoA: 18.7
Propionyl-CoA: 15.6
fatty_acid: 14.8
CHC-CoA: 14.6
2-Methylbutyryl-CoA: 14.6
Benzoyl-CoA: 13.0
trans-1,2-CPDA: 5.3
inactive: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
Ethylmalonyl-CoA: -2.1

ATSignature: (unknown)

No matches above 50%

PKS_AT (917..1213): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 175.9
inactive: 123.8
Methylmalonyl-CoA: 53.5
Methoxymalonyl-CoA: 52.5
Isobutyryl-CoA: 30.7
Propionyl-CoA: 28.2
Benzoyl-CoA: 21.3
2-Methylbutyryl-CoA: 15.4
Ethylmalonyl-CoA: 14.8
Acetyl-CoA: 11.7
CHC-CoA: 10.5
trans-1,2-CPDA: 0.0
fatty_acid: 0.0
3-Methylbutyryl-CoA: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 95.8%; inactive: 91.7%; 2-Rhyd-Malonyl-CoA: 54.2%

c00107_3300019.. - Region 1 - NRPS

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Location: 1 - 47,674 nt. (total: 47,674 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 47674:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X - D-val - thr - ile - thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg107_3

Search NORINE for peptide: strict or relaxed

AMP-binding (516..926): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DItnLGMIiK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 70% (weak)

AMP-binding (1586..1988): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAlLIGAVaK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 80% (moderate)

AMP-binding (4172..4473): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWsIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 90% (moderate)

AMP-binding (5132..5547): ile

NRPSPredictor2: ile

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: ile

Stachelhaus prediction details:

Stachelhaus sequence:: DAFFLGVTFK
Nearest Stachelhaus code:: ile
Stachelhaus code match:: 100% (strong)

AMP-binding (6630..7035): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWSVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

c00126_3300019.. - Region 1 - T1PKS,hglE-KS

Download region GenBank file

Location: 1 - 40,074 nt. (total: 40,074 nt) Show pHMM detection rules used

Region on contig edge.

hglE-KS: (hglE or hglD)
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 40074:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (mal)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg126_1

PKS_AT (1061..1359): mxmal

minowa: Methoxymalonyl-CoA

Prediction, score:

Methoxymalonyl-CoA: 17.1
Methylmalonyl-CoA: 16.0
Propionyl-CoA: 15.6
Isobutyryl-CoA: 13.5
trans-1,2-CPDA: 0.0
inactive: 0.0
fatty_acid: 0.0
Malonyl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
CHC-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ATSignature: (unknown)

No matches above 50%

ctg126_6

PKS_AT (577..882): mal

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 61.9
Methoxymalonyl-CoA: 33.3
Methylmalonyl-CoA: 24.3
inactive: 21.8
Propionyl-CoA: 18.2
fatty_acid: 11.9
CHC-CoA: 10.3
trans-1,2-CPDA: 0.0
Isobutyryl-CoA: 0.0
Ethylmalonyl-CoA: 0.0
Benzoyl-CoA: 0.0
Acetyl-CoA: 0.0
3-Methylbutyryl-CoA: 0.0
2-Methylbutyryl-CoA: 0.0

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 70.8%; inactive: 62.5%

c00127_3300019.. - Region 1 - hglE-KS

Download region GenBank file

Location: 1 - 40,084 nt. (total: 40,084 nt) Show pHMM detection rules used

Region on contig edge.

hglE-KS: (hglE or hglD)

Legend:

core biosynthetic genes

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c00127_3300019.. - Region 2 - bacteriocin

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Location: 105,296 - 116,105 nt. (total: 10,810 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

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c00129_3300019.. - Region 1 - NRPS-like

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Location: 11,070 - 43,766 nt. (total: 32,697 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

Legend:

core biosynthetic genes

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regulatory genes

other genes

resistance

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains