3300021559_7 - 6 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00002_3300021.. (original name was: 3300021559.a:Ga0210409_10000001)

Region	Type	From	To
Region 2.1	NRPS	2,045,438	2,121,073
Region 2.2	bacteriocin	2,155,314	2,162,575
Region 2.3	indole	2,402,825	2,425,848
Region 2.4	bacteriocin	2,712,820	2,723,749
Region 2.5	acyl_amino_acids	2,826,694	2,887,440
Region 2.6	terpene	2,983,379	3,005,140

Region	Type	From	To	Similarity
Region 2.1	NRPS	2,045,438	2,121,073
Region 2.2	bacteriocin	2,155,314	2,162,575
Region 2.3	indole	2,402,825	2,425,848
Region 2.4	bacteriocin	2,712,820	2,723,749
Region 2.5	acyl_amino_acids	2,826,694	2,887,440
Region 2.6	terpene	2,983,379	3,005,140

No secondary metabolite regions were found in these records:: c00001_3300021.. (original name was: 3300021559.a:Ga0210409_10000009); c00003_3300021.. (original name was: 3300021559.a:Ga0210409_10000007)

Compact view

c00002_3300021.. - Region 1 - NRPS

Download region GenBank file

Location: 2,045,438 - 2,121,073 nt. (total: 75,636 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 2045437 - 2121073:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (asp - X) + (asp) + (X) + (D-ser - D-X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg2_1803

Search NORINE for peptide: strict or relaxed

AMP-binding (472..870): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

AMP-binding (1557..1958): X

NRPSPredictor2: glu, gln

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgeDhGtVtK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 50% (weak)

ctg2_1804

Search NORINE for peptide: strict or relaxed

AMP-binding (407..796): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHIGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

ctg2_1810

Search NORINE for peptide: strict or relaxed

AMP-binding (496..897): X

NRPSPredictor2: glu, gln

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgeDhGtVtK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 50% (weak)

ctg2_1811

Search NORINE for peptide: strict or relaxed

AMP-binding (514..910): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (2004..2408): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgegSGgVtK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 50% (weak)

AMP-binding (3506..3907): X

NRPSPredictor2: glu, gln

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgeDhGtVtK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 50% (weak)

c00002_3300021.. - Region 2 - bacteriocin

Download region GenBank file

Location: 2,155,314 - 2,162,575 nt. (total: 7,262 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00002_3300021.. - Region 3 - indole

Download region GenBank file

Location: 2,402,825 - 2,425,848 nt. (total: 23,024 nt) Show pHMM detection rules used

indole: (indsynth or dmat or indole_PTase)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00002_3300021.. - Region 4 - bacteriocin

Download region GenBank file

Location: 2,712,820 - 2,723,749 nt. (total: 10,930 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00002_3300021.. - Region 5 - acyl_amino_acids

Download region GenBank file

Location: 2,826,694 - 2,887,440 nt. (total: 60,747 nt) Show pHMM detection rules used

acyl_amino_acids: NasY

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00002_3300021.. - Region 6 - terpene

Download region GenBank file

Location: 2,983,379 - 3,005,140 nt. (total: 21,762 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

reset view

zoom to selection

Gene details

Select a gene to view the details available for it