3300025298_10 - 15 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00003_3300025.. (original name was: 3300025298.a:Ga0209050_1000028)

Region	Type	From	To	Most similar known cluster		Similarity
Region 3.1	arylpolyene	265,867	309,478

c00011_3300025.. (original name was: 3300025298.a:Ga0209050_1000187)

Region	Type	From	To	Most similar known cluster		Similarity
Region 11.1	bacteriocin	30,241	41,110

c00015_3300025.. (original name was: 3300025298.a:Ga0209050_1000009)

Region	Type	From	To
Region 15.1	NAGGN	300,350	315,240
Region 15.2	NRPS	440,996	493,982
Region 15.3	betalactone	712,268	735,502
Region 15.4	bacteriocin	749,052	759,768

c00017_3300025.. (original name was: 3300025298.a:Ga0209050_1000037)

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	T3PKS	66,947	107,996

c00018_3300025.. (original name was: 3300025298.a:Ga0209050_1000013)

Region	Type	From	To
Region 18.1	NRPS	256,880	322,938
Region 18.2	butyrolactone	729,037	742,456
Region 18.3	NRPS	753,711	811,408

c00021_3300025.. (original name was: 3300025298.a:Ga0209050_1000407)

Region	Type	From	To	Most similar known cluster		Similarity
Region 21.1	NRPS-like	1	36,633

c00026_3300025.. (original name was: 3300025298.a:Ga0209050_1000080)

Region	Type	From	To	Most similar known cluster		Similarity
Region 26.1	terpene	230,248	261,957

c00027_3300025.. (original name was: 3300025298.a:Ga0209050_1000043)

Region	Type	From	To	Most similar known cluster		Similarity
Region 27.1	bacteriocin	123,789	134,634

c00028_3300025.. (original name was: 3300025298.a:Ga0209050_1000701)

Region	Type	From	To	Most similar known cluster		Similarity
Region 28.1	lanthipeptide	2,858	25,932

c00031_3300025.. (original name was: 3300025298.a:Ga0209050_1000079)

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	NRPS	207,060	277,803

Region	Type	From	To	Similarity
Region 3.1	arylpolyene	265,867	309,478
Region 11.1	bacteriocin	30,241	41,110
Region 15.1	NAGGN	300,350	315,240
Region 15.2	NRPS	440,996	493,982
Region 15.3	betalactone	712,268	735,502
Region 15.4	bacteriocin	749,052	759,768
Region 17.1	T3PKS	66,947	107,996
Region 18.1	NRPS	256,880	322,938
Region 18.2	butyrolactone	729,037	742,456
Region 18.3	NRPS	753,711	811,408
Region 21.1	NRPS-like	1	36,633
Region 26.1	terpene	230,248	261,957
Region 27.1	bacteriocin	123,789	134,634
Region 28.1	lanthipeptide	2,858	25,932
Region 31.1	NRPS	207,060	277,803

No secondary metabolite regions were found in these records:: c00001_3300025.. (original name was: 3300025298.a:Ga0209050_1003634); c00002_3300025.. (original name was: 3300025298.a:Ga0209050_1001194); c00004_3300025.. (original name was: 3300025298.a:Ga0209050_1000399); c00005_3300025.. (original name was: 3300025298.a:Ga0209050_1001272); c00006_3300025.. (original name was: 3300025298.a:Ga0209050_1003951); c00007_3300025.. (original name was: 3300025298.a:Ga0209050_1001191); c00008_3300025.. (original name was: 3300025298.a:Ga0209050_1000468); c00009_3300025.. (original name was: 3300025298.a:Ga0209050_1000024); c00010_3300025.. (original name was: 3300025298.a:Ga0209050_1000588); c00012_3300025.. (original name was: 3300025298.a:Ga0209050_1000422); c00013_3300025.. (original name was: 3300025298.a:Ga0209050_1000657); c00014_3300025.. (original name was: 3300025298.a:Ga0209050_1001681); c00016_3300025.. (original name was: 3300025298.a:Ga0209050_1001353); c00019_3300025.. (original name was: 3300025298.a:Ga0209050_1000060); c00020_3300025.. (original name was: 3300025298.a:Ga0209050_1008733); c00022_3300025.. (original name was: 3300025298.a:Ga0209050_1000227); c00023_3300025.. (original name was: 3300025298.a:Ga0209050_1000679); c00024_3300025.. (original name was: 3300025298.a:Ga0209050_1000061); c00025_3300025.. (original name was: 3300025298.a:Ga0209050_1000287); c00029_3300025.. (original name was: 3300025298.a:Ga0209050_1000027); c00030_3300025.. (original name was: 3300025298.a:Ga0209050_1000235); c00032_3300025.. (original name was: 3300025298.a:Ga0209050_1000960)

Compact view

c00003_3300025.. - Region 1 - arylpolyene

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Location: 265,867 - 309,478 nt. (total: 43,612 nt) Show pHMM detection rules used

arylpolyene: (APE_KS1 or APE_KS2)

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c00011_3300025.. - Region 1 - bacteriocin

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Location: 30,241 - 41,110 nt. (total: 10,870 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

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c00015_3300025.. - Region 1 - NAGGN

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Location: 300,350 - 315,240 nt. (total: 14,891 nt) Show pHMM detection rules used

NAGGN: ((TIGR03104 or cds(GATase_7 and Asn_synthase)) and TIGR03103 and (TIGR03106 or Peptidase_M42))

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c00015_3300025.. - Region 2 - NRPS

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Location: 440,996 - 493,982 nt. (total: 52,987 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 2, location 440995 - 493982:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (glu - D-X - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg15_407

Search NORINE for peptide: strict or relaxed

CAL_domain (41..477): pk

minowa: NH2

Prediction, score:

NH2: 163.9
AHBA: 18.0
fatty_acid: 16.9
Acetyl-CoA: 1.6
shikimic_acid: 0.1

AMP-binding (1131..1528): glu

NRPSPredictor2: glu

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: glu

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFGRINK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 100% (strong)

AMP-binding (2190..2594): X

NRPSPredictor2: hydrophilic

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAegiGAVMK
Nearest Stachelhaus code:: phe
Stachelhaus code match:: 70% (weak)

AMP-binding (3719..4125): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiWeLtadDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 50% (weak)

c00015_3300025.. - Region 3 - betalactone

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Location: 712,268 - 735,502 nt. (total: 23,235 nt) Show pHMM detection rules used

betalactone: (HMGL-like and AMP-binding)

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c00015_3300025.. - Region 4 - bacteriocin

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Location: 749,052 - 759,768 nt. (total: 10,717 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

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c00017_3300025.. - Region 1 - T3PKS

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Location: 66,947 - 107,996 nt. (total: 41,050 nt) Show pHMM detection rules used

T3PKS: (Chal_sti_synt_C or Chal_sti_synt_N)

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c00018_3300025.. - Region 1 - NRPS

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Location: 256,880 - 322,938 nt. (total: 66,059 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 256879 - 322938:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - ala - gln) + (ala - val - ala - pro - thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg18_241

Search NORINE for peptide: strict or relaxed

AMP-binding (540..941): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

AMP-binding (1598..1997): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DALWmGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

AMP-binding (2670..3059): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALvYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 90% (moderate)

AMP-binding (3715..4119): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DVQFIAHVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 100% (strong)

AMP-binding (4774..5182): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

ctg18_242

Search NORINE for peptide: strict or relaxed

AMP-binding (477..871): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DALWmGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

AMP-binding (1536..1936): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLFNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 100% (strong)

AMP-binding (2616..3021): gln

NRPSPredictor2: gln

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DAQDLGVVDK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 100% (strong)

c00018_3300025.. - Region 2 - butyrolactone

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Location: 729,037 - 742,456 nt. (total: 13,420 nt) Show pHMM detection rules used

butyrolactone: AfsA

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c00018_3300025.. - Region 3 - NRPS

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Location: 753,711 - 811,408 nt. (total: 57,698 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 3, location 753710 - 811408:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (X - X - ser - D-ser) + (D-asp - X) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg18_648

CAL_domain (37..478): pk

minowa: NH2

Prediction, score:

NH2: 112.9
fatty_acid: 33.5
AHBA: 7.7
Acetyl-CoA: 3.4
shikimic_acid: 0.0

ctg18_650

Search NORINE for peptide: strict or relaxed

AMP-binding (420..810): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DSaLiAEVwK
Nearest Stachelhaus code:: his
Stachelhaus code match:: 70% (weak)

ctg18_651

Search NORINE for peptide: strict or relaxed

AMP-binding (477..881): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiWeLtadDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 50% (weak)

AMP-binding (1551..1952): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DSaeLGtVDK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 70% (weak)

AMP-binding (2611..3000): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (3643..4032): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHFSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

ctg18_652

Search NORINE for peptide: strict or relaxed

AMP-binding (475..870): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

AMP-binding (1970..2375): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: N/A
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DiWeLtadDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 50% (weak)

ctg18_653

Search NORINE for peptide: strict or relaxed

AMP-binding (423..819): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

c00021_3300025.. - Region 1 - NRPS-like

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Location: 1 - 36,633 nt. (total: 36,633 nt) Show pHMM detection rules used

Region on contig edge.

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 36633:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (leu)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg21_9

Search NORINE for peptide: strict or relaxed

AMP-binding (268..612): leu

NRPSPredictor2: leu

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: leu

Stachelhaus prediction details:

Stachelhaus sequence:: DALFiGiVlK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 70% (weak)

c00026_3300025.. - Region 1 - terpene

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Location: 230,248 - 261,957 nt. (total: 31,710 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

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c00027_3300025.. - Region 1 - bacteriocin

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Location: 123,789 - 134,634 nt. (total: 10,846 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

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c00028_3300025.. - Region 1 - lanthipeptide

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Location: 2,858 - 25,932 nt. (total: 23,075 nt) Show pHMM detection rules used

lanthipeptide: ((LANC_like and (Lant_dehydr_N or Lant_dehydr_C) or cds(LANC_like and (Pkinase or DUF4135))) and not (YcaO or TIGR03882))

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Lanthipeptides

Lanthipeptide predictions

Lanthipeptide(s) for ctg28_10 - Putative Class II

ctg28_11 leader / core peptide: MSEKILNMSGDFHLEFDAYQAPANNIGGM - LADhbDhbMECNDhbFGDhbCDhbNLECDhaDhbIMC
ctg28_12 leader / core peptide: MSEQILAM - DhaGDFDDhaDFMDhaYRQVNDhaLGIEDhaAALDhbIVECGDhbIGCDhbALLC

Legend:

Dha: Didehydroalanine
Dhb: Didehydrobutyrine

Lanthipeptides

Core peptide predictions

ctg28_11 - Class II

Cleavage pHMM score: -5.90

RODEO score: 0

Monoisotopic mass: 2360.0 Da

Molecular weight: 2361.7 Da

Number of bridges: 4

Alternative weights: (assuming N unmodified Ser/Thr residues); 2379.8 Da N = 1; 2397.8 Da N = 2; 2415.8 Da N = 3

ctg28_12 - Class II

Cleavage pHMM score: -5.00

RODEO score: 0

Monoisotopic mass: 3941.9 Da

Molecular weight: 3944.4 Da

Number of bridges: 3

Alternative weights: (assuming N unmodified Ser/Thr residues); 3962.4 Da N = 1; 3980.5 Da N = 2; 3998.5 Da N = 3; 4016.5 Da N = 4; 4034.5 Da N = 5

c00031_3300025.. - Region 1 - NRPS

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Location: 207,060 - 277,803 nt. (total: 70,744 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 207059 - 277803:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (D-ala - D-X - gly) + (thr - D-thr - gln) + (gly - D-ser - D-X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg31_225

Search NORINE for peptide: strict or relaxed

AMP-binding (511..949): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

AMP-binding (1612..2041): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHVSLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (3152..3552): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: orn, lys, arg
Small clusters prediction:: N/A
Single AA prediction:: lys

Stachelhaus prediction details:

Stachelhaus sequence:: DGeccGgVtK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 50% (weak)

ctg31_226

Search NORINE for peptide: strict or relaxed

AMP-binding (508..910): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (1567..1969): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNVGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)

AMP-binding (3088..3490): gln

NRPSPredictor2: gln

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: gln

Stachelhaus prediction details:

Stachelhaus sequence:: DAWQlGLIDK
Nearest Stachelhaus code:: gln
Stachelhaus code match:: 90% (moderate)

ctg31_227

Search NORINE for peptide: strict or relaxed

AMP-binding (517..934): ala

NRPSPredictor2: ala

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: ala

Stachelhaus prediction details:

Stachelhaus sequence:: DLwNNALTYK
Nearest Stachelhaus code:: ala
Stachelhaus code match:: 90% (moderate)

AMP-binding (2044..2442): X

NRPSPredictor2: asp, asn, glu, gln, aad

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DGeacGgVtK
Nearest Stachelhaus code:: leu
Stachelhaus code match:: 50% (weak)

AMP-binding (3553..3952): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGLIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)