3300025302_15 - 8 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00001_3300025.. (original name was: 3300025302.a:Ga0207426_1004340)

Region	Type	From	To	Most similar known cluster		Similarity
Region 1.1	NRPS	1	6,976

c00013_3300025.. (original name was: 3300025302.a:Ga0207426_1000235)

Region	Type	From	To	Most similar known cluster		Similarity
Region 13.1	NRPS	1	29,256

c00014_3300025.. (original name was: 3300025302.a:Ga0207426_1000098)

Region	Type	From	To	Most similar known cluster		Similarity
Region 14.1	NRPS-like,T1PKS,betalactone	34,242	81,633

c00017_3300025.. (original name was: 3300025302.a:Ga0207426_1000179)

Region	Type	From	To	Most similar known cluster		Similarity
Region 17.1	NRPS	135,307	158,635

c00039_3300025.. (original name was: 3300025302.a:Ga0207426_1001453)

Region	Type	From	To	Most similar known cluster		Similarity
Region 39.1	NRPS	1	19,599

c00047_3300025.. (original name was: 3300025302.a:Ga0207426_1000361)

Region	Type	From	To	Most similar known cluster		Similarity
Region 47.1	siderophore	1	10,303

c00052_3300025.. (original name was: 3300025302.a:Ga0207426_1000548)

Region	Type	From	To	Most similar known cluster		Similarity
Region 52.1	terpene,phosphonate	1	26,074

c00073_3300025.. (original name was: 3300025302.a:Ga0207426_1000961)

Region	Type	From	To	Most similar known cluster		Similarity
Region 73.1	T1PKS	492	28,391

Region	Type	From	To	Similarity
Region 1.1	NRPS	1	6,976
Region 13.1	NRPS	1	29,256
Region 14.1	NRPS-like,T1PKS,betalactone	34,242	81,633
Region 17.1	NRPS	135,307	158,635
Region 39.1	NRPS	1	19,599
Region 47.1	siderophore	1	10,303
Region 52.1	terpene,phosphonate	1	26,074
Region 73.1	T1PKS	492	28,391

No secondary metabolite regions were found in these records:: c00002_3300025.. (original name was: 3300025302.a:Ga0207426_1003079); c00003_3300025.. (original name was: 3300025302.a:Ga0207426_1000672); c00004_3300025.. (original name was: 3300025302.a:Ga0207426_1001221); c00005_3300025.. (original name was: 3300025302.a:Ga0207426_1001431); c00006_3300025.. (original name was: 3300025302.a:Ga0207426_1001086); c00007_3300025.. (original name was: 3300025302.a:Ga0207426_1003400); c00008_3300025.. (original name was: 3300025302.a:Ga0207426_1000484); c00009_3300025.. (original name was: 3300025302.a:Ga0207426_1001192); c00010_3300025.. (original name was: 3300025302.a:Ga0207426_1001198); c00011_3300025.. (original name was: 3300025302.a:Ga0207426_1000141); c00012_3300025.. (original name was: 3300025302.a:Ga0207426_1001302); c00015_3300025.. (original name was: 3300025302.a:Ga0207426_1000333); c00016_3300025.. (original name was: 3300025302.a:Ga0207426_1000641); c00018_3300025.. (original name was: 3300025302.a:Ga0207426_1000366); c00019_3300025.. (original name was: 3300025302.a:Ga0207426_1000311); c00020_3300025.. (original name was: 3300025302.a:Ga0207426_1000545); c00021_3300025.. (original name was: 3300025302.a:Ga0207426_1001903); c00022_3300025.. (original name was: 3300025302.a:Ga0207426_1000358); c00023_3300025.. (original name was: 3300025302.a:Ga0207426_1000314); c00024_3300025.. (original name was: 3300025302.a:Ga0207426_1000426); c00025_3300025.. (original name was: 3300025302.a:Ga0207426_1000576); c00026_3300025.. (original name was: 3300025302.a:Ga0207426_1000181); c00027_3300025.. (original name was: 3300025302.a:Ga0207426_1000860); c00028_3300025.. (original name was: 3300025302.a:Ga0207426_1005118); c00029_3300025.. (original name was: 3300025302.a:Ga0207426_1000512); c00030_3300025.. (original name was: 3300025302.a:Ga0207426_1002743); c00031_3300025.. (original name was: 3300025302.a:Ga0207426_1000487); c00032_3300025.. (original name was: 3300025302.a:Ga0207426_1012775); c00033_3300025.. (original name was: 3300025302.a:Ga0207426_1000967); c00034_3300025.. (original name was: 3300025302.a:Ga0207426_1000191); c00035_3300025.. (original name was: 3300025302.a:Ga0207426_1004362); c00036_3300025.. (original name was: 3300025302.a:Ga0207426_1000436); c00037_3300025.. (original name was: 3300025302.a:Ga0207426_1007226); c00038_3300025.. (original name was: 3300025302.a:Ga0207426_1000317); c00040_3300025.. (original name was: 3300025302.a:Ga0207426_1012856); c00041_3300025.. (original name was: 3300025302.a:Ga0207426_1000473); c00042_3300025.. (original name was: 3300025302.a:Ga0207426_1000182); c00043_3300025.. (original name was: 3300025302.a:Ga0207426_1000085); c00044_3300025.. (original name was: 3300025302.a:Ga0207426_1000376); c00045_3300025.. (original name was: 3300025302.a:Ga0207426_1003547); c00046_3300025.. (original name was: 3300025302.a:Ga0207426_1007621); c00048_3300025.. (original name was: 3300025302.a:Ga0207426_1001536); c00049_3300025.. (original name was: 3300025302.a:Ga0207426_1000304); c00050_3300025.. (original name was: 3300025302.a:Ga0207426_1000257); c00051_3300025.. (original name was: 3300025302.a:Ga0207426_1000451); c00053_3300025.. (original name was: 3300025302.a:Ga0207426_1000092); c00054_3300025.. (original name was: 3300025302.a:Ga0207426_1000750); c00055_3300025.. (original name was: 3300025302.a:Ga0207426_1000362); c00056_3300025.. (original name was: 3300025302.a:Ga0207426_1000274); c00057_3300025.. (original name was: 3300025302.a:Ga0207426_1000080); c00058_3300025.. (original name was: 3300025302.a:Ga0207426_1000301); c00059_3300025.. (original name was: 3300025302.a:Ga0207426_1000287); c00060_3300025.. (original name was: 3300025302.a:Ga0207426_1006733); c00061_3300025.. (original name was: 3300025302.a:Ga0207426_1001301); c00062_3300025.. (original name was: 3300025302.a:Ga0207426_1000331); c00063_3300025.. (original name was: 3300025302.a:Ga0207426_1000151); c00064_3300025.. (original name was: 3300025302.a:Ga0207426_1000198); c00065_3300025.. (original name was: 3300025302.a:Ga0207426_1000356); c00066_3300025.. (original name was: 3300025302.a:Ga0207426_1000453); c00067_3300025.. (original name was: 3300025302.a:Ga0207426_1001132); c00068_3300025.. (original name was: 3300025302.a:Ga0207426_1000336); c00069_3300025.. (original name was: 3300025302.a:Ga0207426_1000239); c00070_3300025.. (original name was: 3300025302.a:Ga0207426_1002803); c00071_3300025.. (original name was: 3300025302.a:Ga0207426_1000475); c00072_3300025.. (original name was: 3300025302.a:Ga0207426_1012503); c00074_3300025.. (original name was: 3300025302.a:Ga0207426_1000256); c00075_3300025.. (original name was: 3300025302.a:Ga0207426_1000046)

Compact view

c00001_3300025.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 6,976 nt. (total: 6,976 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 6976:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (ser - X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg1_1

Search NORINE for peptide: strict or relaxed

AMP-binding (514..911): ser

NRPSPredictor2: ser

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: ser
Single AA prediction:: ser

Stachelhaus prediction details:

Stachelhaus sequence:: DVWHISLIDK
Nearest Stachelhaus code:: ser
Stachelhaus code match:: 100% (strong)

AMP-binding (1578..1972): X

NRPSPredictor2: (unknown)

SVM prediction details:

NOTE: outside applicability domain

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DgegSGgVtK
Nearest Stachelhaus code:: glu
Stachelhaus code match:: 50% (weak)

c00013_3300025.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 29,256 nt. (total: 29,256 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 29256:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg13_2

Search NORINE for peptide: strict or relaxed

AMP-binding (454..843): X

NRPSPredictor2: (unknown)

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKIGhVGK
Nearest Stachelhaus code:: asn
Stachelhaus code match:: 90% (moderate)

ctg13_3

CAL_domain (59..496): pk

minowa: NH2

Prediction, score:

NH2: 167.9
Acetyl-CoA: 30.1
AHBA: 22.7
fatty_acid: 21.6
shikimic_acid: 2.2

c00014_3300025.. - Region 1 - NRPS-like,T1PKS,betalactone

Download region GenBank file

Location: 34,242 - 81,633 nt. (total: 47,392 nt) Show pHMM detection rules used

NRPS-like: cds((PP-binding or NAD_binding_4) and (AMP-binding or A-OX))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))
betalactone: (HMGL-like and AMP-binding)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 34241 - 81633:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pk)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 2, location 34241 - 76353:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pk)

Direct lookup in NORINE database: strict or relaxed

For candidate cluster 3, location 37772 - 81633:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pk)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg14_48

CAL_domain (43..485): pk

minowa: NH2

Prediction, score:

NH2: 131.1
Acetyl-CoA: 42.9
AHBA: 24.4
shikimic_acid: 6.7
fatty_acid: -2.2

ctg14_50

PKS_AT (536..817): pk

ATSignature: Ethylmalonyl-CoA

Top 3 matches:: Ethylmalonyl-CoA: 66.7%; Methoxymalonyl-CoA: 62.5%; Methylmalonyl-CoA: 62.5%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 101.8
Methylmalonyl-CoA: 74.7
Methoxymalonyl-CoA: 65.9
Ethylmalonyl-CoA: 58.5
inactive: 52.7
Propionyl-CoA: 36.2
Isobutyryl-CoA: 35.5
trans-1,2-CPDA: 27.6
Acetyl-CoA: 25.7
CHC-CoA: 21.3
Benzoyl-CoA: 18.7
2-Methylbutyryl-CoA: 18.0
3-Methylbutyryl-CoA: 11.4
fatty_acid: 0.0

c00017_3300025.. - Region 1 - NRPS

Download region GenBank file

Location: 135,307 - 158,635 nt. (total: 23,329 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 135306 - 158635:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pro)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg17_139

Search NORINE for peptide: strict or relaxed

AMP-binding (249..655): pro

NRPSPredictor2: pro

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: pro, pip
Small clusters prediction:: pro
Single AA prediction:: pro

Stachelhaus prediction details:

Stachelhaus sequence:: DahFIAdVVK
Nearest Stachelhaus code:: pro
Stachelhaus code match:: 70% (weak)

c00039_3300025.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 19,599 nt. (total: 19,599 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

c00047_3300025.. - Region 1 - siderophore

Download region GenBank file

Location: 1 - 10,303 nt. (total: 10,303 nt) Show pHMM detection rules used

Region on contig edge.

siderophore: IucA_IucC

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

c00052_3300025.. - Region 1 - phosphonate,terpene

Download region GenBank file

Location: 1 - 26,074 nt. (total: 26,074 nt) Show pHMM detection rules used

Region on contig edge.

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)
phosphonate: phosphonates

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

c00073_3300025.. - Region 1 - T1PKS

Download region GenBank file

Location: 492 - 28,391 nt. (total: 27,900 nt) Show pHMM detection rules used

Region on contig edge.

T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 491 - 28391:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (pk)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg73_25

PKS_AT (516..811): pk

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 66.7%; CE-Malonyl-CoA: 58.3%; Methylmalonyl-CoA: 54.2%

minowa: Methylmalonyl-CoA

Prediction, score:

Methylmalonyl-CoA: 91.5
Methoxymalonyl-CoA: 82.4
Malonyl-CoA: 75.1
Ethylmalonyl-CoA: 62.7
Propionyl-CoA: 55.5
Isobutyryl-CoA: 51.5
2-Methylbutyryl-CoA: 48.4
trans-1,2-CPDA: 41.6
Benzoyl-CoA: 34.1
Acetyl-CoA: 34.0
inactive: 30.0
fatty_acid: 25.2
3-Methylbutyryl-CoA: 20.5
CHC-CoA: 8.8