3300025304_14 - 8 region(s) - antiSMASH results

Identified secondary metabolite regions using strictness 'relaxed'

c00023_3300025.. (original name was: 3300025304.a:Ga0209257_1001057)

Region	Type	From	To	Most similar known cluster		Similarity
Region 23.1	terpene	13,371	35,196

c00025_3300025.. (original name was: 3300025304.a:Ga0209257_1000333)

Region	Type	From	To	Most similar known cluster		Similarity
Region 25.1	resorcinol	37,219	79,138

c00029_3300025.. (original name was: 3300025304.a:Ga0209257_1000449)

Region	Type	From	To	Most similar known cluster		Similarity
Region 29.1	resorcinol,arylpolyene	1	32,206

c00031_3300025.. (original name was: 3300025304.a:Ga0209257_1001377)

Region	Type	From	To	Most similar known cluster		Similarity
Region 31.1	arylpolyene	1	22,298

c00037_3300025.. (original name was: 3300025304.a:Ga0209257_1000116)

Region	Type	From	To	Most similar known cluster		Similarity
Region 37.1	NRPS,T1PKS	79,863	132,173

c00086_3300025.. (original name was: 3300025304.a:Ga0209257_1001022)

Region	Type	From	To	Most similar known cluster		Similarity
Region 86.1	NRPS,T1PKS	1	35,437

c00087_3300025.. (original name was: 3300025304.a:Ga0209257_1000149)

Region	Type	From	To	Most similar known cluster		Similarity
Region 87.1	bacteriocin	105,614	116,408

c00099_3300025.. (original name was: 3300025304.a:Ga0209257_1000410)

Region	Type	From	To	Most similar known cluster		Similarity
Region 99.1	NRPS	1	33,964

Region	Type	From	To	Similarity
Region 23.1	terpene	13,371	35,196
Region 25.1	resorcinol	37,219	79,138
Region 29.1	resorcinol,arylpolyene	1	32,206
Region 31.1	arylpolyene	1	22,298
Region 37.1	NRPS,T1PKS	79,863	132,173
Region 86.1	NRPS,T1PKS	1	35,437
Region 87.1	bacteriocin	105,614	116,408
Region 99.1	NRPS	1	33,964

No secondary metabolite regions were found in these records:: c00001_3300025.. (original name was: 3300025304.a:Ga0209257_1010575); c00002_3300025.. (original name was: 3300025304.a:Ga0209257_1012374); c00003_3300025.. (original name was: 3300025304.a:Ga0209257_1011970); c00004_3300025.. (original name was: 3300025304.a:Ga0209257_1000172); c00005_3300025.. (original name was: 3300025304.a:Ga0209257_1000516); c00006_3300025.. (original name was: 3300025304.a:Ga0209257_1000290); c00007_3300025.. (original name was: 3300025304.a:Ga0209257_1003430); c00008_3300025.. (original name was: 3300025304.a:Ga0209257_1002425); c00009_3300025.. (original name was: 3300025304.a:Ga0209257_1003121); c00010_3300025.. (original name was: 3300025304.a:Ga0209257_1000719); c00011_3300025.. (original name was: 3300025304.a:Ga0209257_1004793); c00012_3300025.. (original name was: 3300025304.a:Ga0209257_1009837); c00013_3300025.. (original name was: 3300025304.a:Ga0209257_1004330); c00014_3300025.. (original name was: 3300025304.a:Ga0209257_1010593); c00015_3300025.. (original name was: 3300025304.a:Ga0209257_1001281); c00016_3300025.. (original name was: 3300025304.a:Ga0209257_1001010); c00017_3300025.. (original name was: 3300025304.a:Ga0209257_1000214); c00018_3300025.. (original name was: 3300025304.a:Ga0209257_1004456); c00019_3300025.. (original name was: 3300025304.a:Ga0209257_1000663); c00020_3300025.. (original name was: 3300025304.a:Ga0209257_1001061); c00021_3300025.. (original name was: 3300025304.a:Ga0209257_1015320); c00022_3300025.. (original name was: 3300025304.a:Ga0209257_1005730); c00024_3300025.. (original name was: 3300025304.a:Ga0209257_1000804); c00026_3300025.. (original name was: 3300025304.a:Ga0209257_1000139); c00027_3300025.. (original name was: 3300025304.a:Ga0209257_1007821); c00028_3300025.. (original name was: 3300025304.a:Ga0209257_1002001); c00030_3300025.. (original name was: 3300025304.a:Ga0209257_1004869); c00032_3300025.. (original name was: 3300025304.a:Ga0209257_1000565); c00033_3300025.. (original name was: 3300025304.a:Ga0209257_1005746); c00034_3300025.. (original name was: 3300025304.a:Ga0209257_1000411); c00035_3300025.. (original name was: 3300025304.a:Ga0209257_1000669); c00036_3300025.. (original name was: 3300025304.a:Ga0209257_1000072); c00038_3300025.. (original name was: 3300025304.a:Ga0209257_1000713); c00039_3300025.. (original name was: 3300025304.a:Ga0209257_1009055); c00040_3300025.. (original name was: 3300025304.a:Ga0209257_1000205); c00041_3300025.. (original name was: 3300025304.a:Ga0209257_1001367); c00042_3300025.. (original name was: 3300025304.a:Ga0209257_1015547); c00043_3300025.. (original name was: 3300025304.a:Ga0209257_1000821); c00044_3300025.. (original name was: 3300025304.a:Ga0209257_1000724); c00045_3300025.. (original name was: 3300025304.a:Ga0209257_1007245); c00046_3300025.. (original name was: 3300025304.a:Ga0209257_1000943); c00047_3300025.. (original name was: 3300025304.a:Ga0209257_1000361); c00048_3300025.. (original name was: 3300025304.a:Ga0209257_1003011); c00049_3300025.. (original name was: 3300025304.a:Ga0209257_1006488); c00050_3300025.. (original name was: 3300025304.a:Ga0209257_1005662); c00051_3300025.. (original name was: 3300025304.a:Ga0209257_1002876); c00052_3300025.. (original name was: 3300025304.a:Ga0209257_1013612); c00053_3300025.. (original name was: 3300025304.a:Ga0209257_1006448); c00054_3300025.. (original name was: 3300025304.a:Ga0209257_1004217); c00055_3300025.. (original name was: 3300025304.a:Ga0209257_1000763); c00056_3300025.. (original name was: 3300025304.a:Ga0209257_1000508); c00057_3300025.. (original name was: 3300025304.a:Ga0209257_1003692); c00058_3300025.. (original name was: 3300025304.a:Ga0209257_1005660); c00059_3300025.. (original name was: 3300025304.a:Ga0209257_1001282); c00060_3300025.. (original name was: 3300025304.a:Ga0209257_1003804); c00061_3300025.. (original name was: 3300025304.a:Ga0209257_1000215); c00062_3300025.. (original name was: 3300025304.a:Ga0209257_1000312); c00063_3300025.. (original name was: 3300025304.a:Ga0209257_1001376); c00064_3300025.. (original name was: 3300025304.a:Ga0209257_1000397); c00065_3300025.. (original name was: 3300025304.a:Ga0209257_1003780); c00066_3300025.. (original name was: 3300025304.a:Ga0209257_1003183); c00067_3300025.. (original name was: 3300025304.a:Ga0209257_1000095); c00068_3300025.. (original name was: 3300025304.a:Ga0209257_1001351); c00069_3300025.. (original name was: 3300025304.a:Ga0209257_1003162); c00070_3300025.. (original name was: 3300025304.a:Ga0209257_1000575); c00071_3300025.. (original name was: 3300025304.a:Ga0209257_1002597); c00072_3300025.. (original name was: 3300025304.a:Ga0209257_1000607); c00073_3300025.. (original name was: 3300025304.a:Ga0209257_1003972); c00074_3300025.. (original name was: 3300025304.a:Ga0209257_1000502); c00075_3300025.. (original name was: 3300025304.a:Ga0209257_1000412); c00076_3300025.. (original name was: 3300025304.a:Ga0209257_1008770); c00077_3300025.. (original name was: 3300025304.a:Ga0209257_1004591); c00078_3300025.. (original name was: 3300025304.a:Ga0209257_1005239); c00079_3300025.. (original name was: 3300025304.a:Ga0209257_1000475); c00080_3300025.. (original name was: 3300025304.a:Ga0209257_1009032); c00081_3300025.. (original name was: 3300025304.a:Ga0209257_1000873); c00082_3300025.. (original name was: 3300025304.a:Ga0209257_1001106); c00083_3300025.. (original name was: 3300025304.a:Ga0209257_1000495); c00084_3300025.. (original name was: 3300025304.a:Ga0209257_1003012); c00085_3300025.. (original name was: 3300025304.a:Ga0209257_1000226); c00088_3300025.. (original name was: 3300025304.a:Ga0209257_1004288); c00089_3300025.. (original name was: 3300025304.a:Ga0209257_1000109); c00090_3300025.. (original name was: 3300025304.a:Ga0209257_1011054); c00091_3300025.. (original name was: 3300025304.a:Ga0209257_1003691); c00092_3300025.. (original name was: 3300025304.a:Ga0209257_1000977); c00093_3300025.. (original name was: 3300025304.a:Ga0209257_1004758); c00094_3300025.. (original name was: 3300025304.a:Ga0209257_1001138); c00095_3300025.. (original name was: 3300025304.a:Ga0209257_1007446); c00096_3300025.. (original name was: 3300025304.a:Ga0209257_1001238); c00097_3300025.. (original name was: 3300025304.a:Ga0209257_1001166); c00098_3300025.. (original name was: 3300025304.a:Ga0209257_1013345); c00100_3300025.. (original name was: 3300025304.a:Ga0209257_1000249); c00101_3300025.. (original name was: 3300025304.a:Ga0209257_1003587); c00102_3300025.. (original name was: 3300025304.a:Ga0209257_1004781); c00103_3300025.. (original name was: 3300025304.a:Ga0209257_1001995); c00104_3300025.. (original name was: 3300025304.a:Ga0209257_1014925); c00105_3300025.. (original name was: 3300025304.a:Ga0209257_1008756); c00106_3300025.. (original name was: 3300025304.a:Ga0209257_1000432); c00107_3300025.. (original name was: 3300025304.a:Ga0209257_1000275); c00108_3300025.. (original name was: 3300025304.a:Ga0209257_1000258); c00109_3300025.. (original name was: 3300025304.a:Ga0209257_1000057); c00110_3300025.. (original name was: 3300025304.a:Ga0209257_1000417); c00111_3300025.. (original name was: 3300025304.a:Ga0209257_1001684)

Compact view

c00023_3300025.. - Region 1 - terpene

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Location: 13,371 - 35,196 nt. (total: 21,826 nt) Show pHMM detection rules used

terpene: (Terpene_synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth or TRI5)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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c00025_3300025.. - Region 1 - resorcinol

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Location: 37,219 - 79,138 nt. (total: 41,920 nt) Show pHMM detection rules used

resorcinol: DarB

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

TTA codons

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Gene details

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c00029_3300025.. - Region 1 - arylpolyene,resorcinol

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Location: 1 - 32,206 nt. (total: 32,206 nt) Show pHMM detection rules used

Region on contig edge.

resorcinol: DarB
arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

TTA codons

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c00031_3300025.. - Region 1 - arylpolyene

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Location: 1 - 22,298 nt. (total: 22,298 nt) Show pHMM detection rules used

Region on contig edge.

arylpolyene: (APE_KS1 or APE_KS2)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

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resistance

TTA codons

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c00037_3300025.. - Region 1 - NRPS,T1PKS

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Location: 79,863 - 132,173 nt. (total: 52,311 nt) Show pHMM detection rules used

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 79862 - 132173:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (val - mal) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg37_97

Search NORINE for peptide: strict or relaxed

AMP-binding (225..620): val

NRPSPredictor2: val

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: val

Stachelhaus prediction details:

Stachelhaus sequence:: DALWfGGTFK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 90% (moderate)

PKS_AT (1355..1635): mal

ATSignature: Malonyl-CoA, inactive

Top 3 matches:: Malonyl-CoA: 87.5%; inactive: 87.5%; Propionyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 133.3
Methoxymalonyl-CoA: 67.9
inactive: 67.2
Methylmalonyl-CoA: 61.7
Propionyl-CoA: 45.2
Isobutyryl-CoA: 40.0
Ethylmalonyl-CoA: 30.9
2-Methylbutyryl-CoA: 25.7
CHC-CoA: 23.5
fatty_acid: 18.4
Acetyl-CoA: 17.4
Benzoyl-CoA: 15.1
trans-1,2-CPDA: 7.2
3-Methylbutyryl-CoA: 0.0

ctg37_98

Search NORINE for peptide: strict or relaxed

AMP-binding (482..883): X

NRPSPredictor2: val, leu, ile, abu, iva

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: val, leu, ile, abu, iva
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DMpqwGGVyK
Nearest Stachelhaus code:: val
Stachelhaus code match:: 60% (weak)

c00086_3300025.. - Region 1 - NRPS,T1PKS

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Location: 1 - 35,437 nt. (total: 35,437 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))
T1PKS: cds(PKS_AT and (PKS_KS or ene_KS or mod_KS or hyb_KS or itr_KS or tra_KS))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 35437:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (X) + (ohmal) + (X)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg86_1

Search NORINE for peptide: strict or relaxed

AMP-binding (517..911): X

NRPSPredictor2: glu, gln

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DvWNIGliHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 70% (weak)

AMP-binding (1569..1839): X

NRPSPredictor2: hydrophobic-aliphatic

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: N/A
Small clusters prediction:: N/A
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIG---K
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 70% (weak)

ctg86_2

PKS_AT (547..835): mal

ATSignature: Malonyl-CoA

Top 3 matches:: Malonyl-CoA: 70.8%; inactive: 62.5%; Methylmalonyl-CoA: 58.3%

minowa: Malonyl-CoA

Prediction, score:

Malonyl-CoA: 143.6
inactive: 87.2
Methoxymalonyl-CoA: 69.9
Methylmalonyl-CoA: 61.4
Propionyl-CoA: 49.4
Ethylmalonyl-CoA: 40.4
Acetyl-CoA: 27.4
Isobutyryl-CoA: 27.3
2-Methylbutyryl-CoA: 24.5
Benzoyl-CoA: 21.4
CHC-CoA: 21.2
fatty_acid: 17.3
trans-1,2-CPDA: 0.0
3-Methylbutyryl-CoA: 0.0

ctg86_3

Search NORINE for peptide: strict or relaxed

CAL_domain (45..482): pk

minowa: NH2

Prediction, score:

NH2: 178.5
Acetyl-CoA: 43.0
AHBA: 9.5
fatty_acid: 9.3
shikimic_acid: 0.0

AMP-binding (1156..1550): X

NRPSPredictor2: glu, gln

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: glu, gln
Single AA prediction:: N/A

Stachelhaus prediction details:

Stachelhaus sequence:: DvWNIGliHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 70% (weak)

c00087_3300025.. - Region 1 - bacteriocin

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Location: 105,614 - 116,408 nt. (total: 10,795 nt) Show pHMM detection rules used

bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692 or TIGR01193)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

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Gene details

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c00099_3300025.. - Region 1 - NRPS

Download region GenBank file

Location: 1 - 33,964 nt. (total: 33,964 nt) Show pHMM detection rules used

Region on contig edge.

NRPS: (cds(Condensation and (AMP-binding or A-OX)) or (Condensation and AMP-binding))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

TTA codons

reset view

zoom to selection

Gene details

Select a gene to view the details available for it

NRPS/PKS domains

Detailed domain annotation

Selected features only

Show module domains

NRPS/PKS products

NRPS/PKS monomers

Predicted core structure(s)

For candidate cluster 1, location 0 - 33964:

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

Polymer prediction:: (gly) + (asp) + (thr)

Direct lookup in NORINE database: strict or relaxed

Link to NORINE database query form

NRPS/PKS monomer predictions

ctg99_1

Search NORINE for peptide: strict or relaxed

AMP-binding (848..1236): gly

NRPSPredictor2: gly

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: gly, ala, val, leu, ile, abu, iva
Small clusters prediction:: gly, ala
Single AA prediction:: gly

Stachelhaus prediction details:

Stachelhaus sequence:: DILQLGMIWK
Nearest Stachelhaus code:: gly
Stachelhaus code match:: 100% (strong)

ctg99_2

Search NORINE for peptide: strict or relaxed

AMP-binding (465..856): asp

NRPSPredictor2: asp

SVM prediction details:

Predicted physicochemical class:: hydrophilic
Large clusters prediction:: asp, asn, glu, gln, aad
Small clusters prediction:: asp, asn
Single AA prediction:: asp

Stachelhaus prediction details:

Stachelhaus sequence:: DLTKVGHVGK
Nearest Stachelhaus code:: asp
Stachelhaus code match:: 100% (strong)

ctg99_3

Search NORINE for peptide: strict or relaxed

AMP-binding (500..897): thr

NRPSPredictor2: thr

SVM prediction details:

Predicted physicochemical class:: hydrophobic-aliphatic
Large clusters prediction:: ser, thr, dhpg, hpg
Small clusters prediction:: thr
Single AA prediction:: thr

Stachelhaus prediction details:

Stachelhaus sequence:: DFWNIGMVHK
Nearest Stachelhaus code:: thr
Stachelhaus code match:: 100% (strong)